Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 227 of 325
Found at i:70729535 original size:46 final size:46
Alignment explanation
Indices: 70729362--70729537 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
70729352 TGTAACCCGC
* * *
70729362 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
70729408 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
70729458 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
70729501 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
70729538 TGCCCAAACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 59 0.54
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:70729556 original size:46 final size:45
Alignment explanation
Indices: 70729413--70729556 Score: 157
Period size: 46 Copynumber: 3.1 Consensus size: 45
70729403 CGCATCCATG
*
70729413 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATCT
* * * * *
70729460 CA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCT
*
70729506 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACAT-CT
70729552 AGTGA
1 AGTGA
70729557 CATGTCACTT
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
44 8 0.10
45 1 0.01
46 33 0.42
47 32 0.41
48 1 0.01
49 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCT
Found at i:70737548 original size:24 final size:24
Alignment explanation
Indices: 70737474--70737548 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
70737464 TATCCGGTGC
70737474 TTCCTGA-TAATAACTCTT-TCGAGT
1 TTCCTGATTAA-AACTCTTAT-GAGT
* * *
70737498 TACCT-ATT-AAGCT-TTATGAGC
1 TTCCTGATTAAAACTCTTATGAGT
*
70737519 TCCCTGATTAAAACTCTTATGAGT
1 TTCCTGATTAAAACTCTTATGAGT
70737543 TTCCTG
1 TTCCTG
70737549 TTTAGCCCGG
Statistics
Matches: 39, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
21 9 0.23
22 7 0.18
23 6 0.15
24 17 0.44
ACGTcount: A:0.25, C:0.21, G:0.13, T:0.40
Consensus pattern (24 bp):
TTCCTGATTAAAACTCTTATGAGT
Found at i:70737939 original size:12 final size:12
Alignment explanation
Indices: 70737924--70737950 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
70737914 TTCTTATACT
70737924 TATTTAAATGAA
1 TATTTAAATGAA
70737936 TATTTAAATGAA
1 TATTTAAATGAA
70737948 TAT
1 TAT
70737951 GATTGGTAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (12 bp):
TATTTAAATGAA
Found at i:70740702 original size:29 final size:28
Alignment explanation
Indices: 70740670--70740772 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
70740660 GTGACGAGAT
* *
70740670 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
70740699 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
70740728 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
70740757 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70740773 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:70748501 original size:29 final size:28
Alignment explanation
Indices: 70748469--70748571 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
70748459 GTGACGAGAT
* *
70748469 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
70748498 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
70748527 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
70748556 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70748572 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:70756299 original size:29 final size:28
Alignment explanation
Indices: 70756267--70756369 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
70756257 GTGACGAGAT
* *
70756267 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
70756296 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
70756325 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
70756354 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
70756370 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:70757977 original size:32 final size:34
Alignment explanation
Indices: 70757907--70757981 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 34
70757897 TATTTCTATG
*
70757907 TTTTTACTTTTATCTTTATTTGTTTTAAACTTAC
1 TTTTTACTTTTATCTTTATTTCTTTTAAACTTAC
70757941 TTTTTA-TTTTAT-TTTATTTCTCTTTAATAC-TA-
1 TTTTTACTTTTATCTTTATTTCT-TTTAA-ACTTAC
70757973 TTTTTACTT
1 TTTTTACTT
70757982 CATATTTAGG
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
32 14 0.38
33 15 0.41
34 8 0.22
ACGTcount: A:0.20, C:0.11, G:0.01, T:0.68
Consensus pattern (34 bp):
TTTTTACTTTTATCTTTATTTCTTTTAAACTTAC
Found at i:70766718 original size:43 final size:43
Alignment explanation
Indices: 70766671--70766777 Score: 119
Period size: 43 Copynumber: 2.5 Consensus size: 43
70766661 TCCCAGGCGT
*
70766671 GGTCTTACATGTAATTACATAT-CGATG-CAACTATCCCAAACAG
1 GGTCTTACATG-AATCACATATACGATGCCAA-TATCCCAAACAG
* * * * *
70766714 GGTCTTACACGAATCACATATACGATGCCGATGTCCCAGACAT
1 GGTCTTACATGAATCACATATACGATGCCAATATCCCAAACAG
70766757 GGTCTTACATGCAATCACATA
1 GGTCTTACATG-AATCACATA
70766778 CCGTAAATCC
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 9 0.17
43 34 0.63
44 11 0.20
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACATGAATCACATATACGATGCCAATATCCCAAACAG
Found at i:70769542 original size:18 final size:18
Alignment explanation
Indices: 70769519--70769553 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70769509 TAAAAATAGT
*
70769519 AAGCATCAAAATGGTTTC
1 AAGCATCAAAATAGTTTC
*
70769537 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
70769554 GACACATAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:70774109 original size:40 final size:40
Alignment explanation
Indices: 70774047--70774160 Score: 147
Period size: 40 Copynumber: 2.9 Consensus size: 40
70774037 TTATTTGTGA
* * * *
70774047 CACTTAGTGTGCGGTACAACATAGCTTTGGCTATATATGG
1 CACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATGG
* *
70774087 CACTGAGTGTGCGATTCGACATAGCTTCGACTATATATGG
1 CACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATGG
* * *
70774127 CACTTAGTGTGTGATTTGAGATAGCTTCGGCTAT
1 CACTTAGTGTGCGATTCGACATAGCTTCGGCTAT
70774161 GTACGACACT
Statistics
Matches: 63, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (40 bp):
CACTTAGTGTGCGATTCGACATAGCTTCGGCTATATATGG
Found at i:70774171 original size:40 final size:40
Alignment explanation
Indices: 70774047--70774179 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
70774037 TTATTTGTGA
* * * * *
70774047 CACTTAGTGTGCGGTACAACATAGCTTTGGCTATATATGG
1 CACTTAGTGTGTGATTCGACATAGCTTCGGCTATATATGG
* * *
70774087 CACTGAGTGTGCGATTCGACATAGCTTCGACTATATATGG
1 CACTTAGTGTGTGATTCGACATAGCTTCGGCTATATATGG
* * * * *
70774127 CACTTAGTGTGTGATTTGAGATAGCTTCGGCTATGTACGA
1 CACTTAGTGTGTGATTCGACATAGCTTCGGCTATATATGG
*
70774167 CACTTTGTGTGTG
1 CACTTAGTGTGTG
70774180 TGATATTGAG
Statistics
Matches: 78, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 78 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (40 bp):
CACTTAGTGTGTGATTCGACATAGCTTCGGCTATATATGG
Found at i:70797234 original size:25 final size:25
Alignment explanation
Indices: 70797200--70797265 Score: 132
Period size: 25 Copynumber: 2.6 Consensus size: 25
70797190 CCATTTTCAC
70797200 AGCTCGTGTGAGCATACTTATTTAT
1 AGCTCGTGTGAGCATACTTATTTAT
70797225 AGCTCGTGTGAGCATACTTATTTAT
1 AGCTCGTGTGAGCATACTTATTTAT
70797250 AGCTCGTGTGAGCATA
1 AGCTCGTGTGAGCATA
70797266 TATGTACAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (25 bp):
AGCTCGTGTGAGCATACTTATTTAT
Found at i:70801538 original size:27 final size:26
Alignment explanation
Indices: 70801517--70801581 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
70801507 ACCCTAGTTA
70801517 GGTAAAATAACCATAATACCCTTGTAG
1 GGTAAAATAACCATAATACCC-TGTAG
* ** *
70801544 GGTAAAATGACTGTAATACCCCTGTAT
1 GGTAAAATAACCATAATA-CCCTGTAG
70801571 GGTAAAATAAC
1 GGTAAAATAAC
70801582 GATTATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (26 bp):
GGTAAAATAACCATAATACCCTGTAG
Found at i:70801966 original size:28 final size:28
Alignment explanation
Indices: 70801934--70801990 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
70801924 ACATGGTACA
* * *
70801934 GATACTACATTGGGCTTAGGCCCACACT
1 GATACTACATAGGGCTAAGGCCCAAACT
**
70801962 GATACTGTATAGGGCTAAGGCCCAAACT
1 GATACTACATAGGGCTAAGGCCCAAACT
70801990 G
1 G
70801991 TATTGATACT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (28 bp):
GATACTACATAGGGCTAAGGCCCAAACT
Found at i:70806372 original size:26 final size:26
Alignment explanation
Indices: 70806343--70806483 Score: 129
Period size: 27 Copynumber: 5.3 Consensus size: 26
70806333 ATCCCTATTT
* *
70806343 AAAATACTTTGGTTTACAAAATTACC
1 AAAATACCTTGGTTTATAAAATTACC
* * * *
70806369 AAAATACCCTGCTTTGTAAAATTACT
1 AAAATACCTTGGTTTATAAAATTACC
70806395 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATA-CCTTGGTTTATAAAATTACC
*** * *
70806422 AAAATATCCCCAGTTTGTAAAATTATC
1 AAAATA-CCTTGGTTTATAAAATTACC
* * *
70806449 AAAATACCCCTAGTTTGTAAAATTACC
1 AAAATA-CCTTGGTTTATAAAATTACC
70806476 AAAATACC
1 AAAATACC
70806484 CCTAATTTGT
Statistics
Matches: 95, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
26 28 0.29
27 67 0.71
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.32
Consensus pattern (26 bp):
AAAATACCTTGGTTTATAAAATTACC
Found at i:70806568 original size:27 final size:27
Alignment explanation
Indices: 70806360--70806610 Score: 206
Period size: 27 Copynumber: 9.3 Consensus size: 27
70806350 TTTGGTTTAC
*
70806360 AAAATTACCAAAATACCCT-GCTTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* * * *
70806386 AAAATTACTAAAATACCCTTGGTTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
70806413 AAAATTACCAAAATATCCC-C-AGTTTGT
1 AAAATTACCAAAATA-CCCTCGA-TTTGT
* *
70806440 AAAATTATCAAAATACCC-CTAGTTTGT
1 AAAATTACCAAAATACCCTCGA-TTTGT
*
70806467 AAAATTACCAAAATACCC-CTAATTTGT
1 AAAATTACCAAAATACCCTC-GATTTGT
* ** **
70806494 GAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGATTTGT
*** * *
70806521 AAAATTATTGAAATACTCTCGACTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
* *
70806548 AAAATTACCAAAGTACCCTCGATTTAT
1 AAAATTACCAAAATACCCTCGATTTGT
* ****
70806575 AGAATTACCGTTTTACCCTCGATTTGT
1 AAAATTACCAAAATACCCTCGATTTGT
70806602 AAAATTACC
1 AAAATTACC
70806611 GTTTTACCCT
Statistics
Matches: 185, Mismatches: 34, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
26 22 0.12
27 158 0.85
28 5 0.03
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGATTTGT
Found at i:70806623 original size:81 final size:81
Alignment explanation
Indices: 70806561--70807229 Score: 859
Period size: 81 Copynumber: 8.3 Consensus size: 81
70806551 ATTACCAAAG
* * * *
70806561 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTGTAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
70806626 TACAGAATTACCGTTT
66 TACAGAATTACCGTTT
* * * *
70806642 TTCCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCCCAAT
1 TACCCTCGA-TTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAT
* *
70806706 TTACATAATTACCATTT
65 TTACAGAATTACCGTTT
* * * *
70806723 TACCC-CGATTTACATAATTATCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
*
70806787 TACAGAATTACTGTTT
66 TACAGAATTACCGTTT
* *
70806803 TACCCTC-AGTTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTTTACCCTC-AG
1 TACCCTCGA-TTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGA-
**
70806866 TTTACAGAATTATTGTTT
64 TTTACAGAATTACCGTTT
* *
70806884 TACCCTTGATTTACAGAATTACTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATG
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAT-
*
70806949 TGTA-A-AATTATCGTTT
65 T-TACAGAATTACCGTTT
* * **
70806965 TACCCTCGATTTACAGAATTACCGTTTTACCCTC-AGTTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGA-TTTATAGAATTACCGTTTTACCCTCGAT
*
70807029 TTATAGAATTACCGTTT
65 TTACAGAATTACCGTTT
* * * * * *
70807046 TACCC-CTAATTTACATAATTACCATTTTACCCCCGATTTACATAATTATCGTTTTACCCTCGAT
1 TACCCTC-GATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGAT
*
70807110 TTACAGAACTACCGTTT
65 TTACAGAATTACCGTTT
* * * *
70807127 TATCCTCAATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
*
70807192 TACAGAATTACTGTTT
66 TACAGAATTACCGTTT
*
70807208 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
70807230 TAAAATACCC
Statistics
Matches: 512, Mismatches: 61, Indels: 30
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.00
80 75 0.15
81 427 0.83
82 6 0.01
83 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATT
TACAGAATTACCGTTT
Found at i:70807240 original size:27 final size:27
Alignment explanation
Indices: 70806561--70807230 Score: 777
Period size: 27 Copynumber: 24.9 Consensus size: 27
70806551 ATTACCAAAG
* *
70806561 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
** * *
70806588 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70806615 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
70806642 TTCCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACTGTTT
* *
70806669 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * * **
70806696 TACCCCCAATTTACATAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70806723 TACCC-CGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
*
70806749 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
70806776 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70806803 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACTGTTT
*
70806830 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70806857 TACCCTC-AGTTTACAGAATTATTGTTT
1 TACCCTCGA-TTTACAGAATTACTGTTT
* *
70806884 TACCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
70806911 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
70806938 TACCCTCGATGTGTA-A-AATTA-TCGTTT
1 TACCCTCGAT-T-TACAGAATTACT-GTTT
*
70806965 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70806992 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTACAGAATTACTGTTT
* *
70807019 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
70807046 TACCC-CTAATTTACATAATTACCATTT
1 TACCCTC-GATTTACAGAATTACTGTTT
* *
70807073 TACCCCCGATTTACATAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-GTTT
* *
70807100 TACCCTCGATTTACAGAACTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
70807127 TATCCTCAATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70807154 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70807181 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70807208 TACCCTCGATTTACAAAATTACT
1 TACCCTCGATTTACAGAATTACT
70807231 AAAATACCCT
Statistics
Matches: 556, Mismatches: 66, Indels: 42
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.00
26 29 0.05
27 515 0.93
28 8 0.01
29 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:70808567 original size:9 final size:9
Alignment explanation
Indices: 70808555--70808631 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
70808545 TTTGATAAAC
70808555 ATGATATGT
1 ATGATATGT
*
70808564 ATGATATGCAC
1 ATGATATG--T
70808575 ATGATATGT
1 ATGATATGT
*
70808584 ATGATATGCAC
1 ATGATATG--T
*
70808595 ATGACATGT
1 ATGATATGT
*
70808604 ATGATATGCAC
1 ATGATATG--T
70808615 ATGATATGT
1 ATGATATGT
70808624 ATGATATG
1 ATGATATG
70808632 CACACGAGAT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:70808580 original size:11 final size:11
Alignment explanation
Indices: 70808564--70808635 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 11
70808554 CATGATATGT
70808564 ATGATATGCAC
1 ATGATATGCAC
*
70808575 ATGATATG--T
1 ATGATATGCAC
70808584 ATGATATGCAC
1 ATGATATGCAC
* *
70808595 ATGACATG--T
1 ATGATATGCAC
70808604 ATGATATGCAC
1 ATGATATGCAC
*
70808615 ATGATATG--T
1 ATGATATGCAC
70808624 ATGATATGCAC
1 ATGATATGCAC
70808635 A
1 A
70808636 CGAGATGTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
9 23 0.49
11 24 0.51
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:70808643 original size:20 final size:20
Alignment explanation
Indices: 70808553--70808635 Score: 157
Period size: 20 Copynumber: 4.2 Consensus size: 20
70808543 ATTTTGATAA
70808553 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70808573 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70808593 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
70808613 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
70808633 ACA
1 ACA
70808636 CGAGATGTTC
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70808744 original size:24 final size:23
Alignment explanation
Indices: 70808689--70808877 Score: 256
Period size: 24 Copynumber: 8.0 Consensus size: 23
70808679 GAGGAAGTGA
70808689 AAAAGGGCTTATG-CCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70808711 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70808734 CAAAAGGGCTTATGCCCCAATTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
70808758 GAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
70808781 CAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTAT
*
70808805 TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT
*
70808828 AAAAAGGGCTTTTGCCCCAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTA-T
*
70808853 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
70808877 A
1 A
70808878 TGATAAAGCA
Statistics
Matches: 149, Mismatches: 11, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
22 12 0.08
23 52 0.35
24 74 0.50
25 11 0.07
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGCTTATGCCCCAGTTAT
Found at i:70808774 original size:47 final size:47
Alignment explanation
Indices: 70808689--70808855 Score: 291
Period size: 47 Copynumber: 3.6 Consensus size: 47
70808679 GAGGAAGTGA
70808689 AAAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
* *
70808735 AAAAGGGCTTATGCCCCAATTATGAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
70808782 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
*
70808829 AAAAGGGCTTTTGCCCCAGTTATTAAA
1 AAAAGGGCTTATGCCCCAGTTATTAAA
70808856 AGAGGCTAGG
Statistics
Matches: 114, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
46 13 0.11
47 101 0.89
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTATC
Found at i:70817404 original size:35 final size:35
Alignment explanation
Indices: 70817365--70817434 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
70817355 TTCCATGGAG
70817365 ATACTTTCAAAAATACCTTATCACTGACTGAAAGT
1 ATACTTTCAAAAATACCTTATCACTGACTGAAAGT
70817400 ATACTTTCAAAAATACCTTATCACTGACTGAAAGT
1 ATACTTTCAAAAATACCTTATCACTGACTGAAAGT
70817435 CGATCTCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (35 bp):
ATACTTTCAAAAATACCTTATCACTGACTGAAAGT
Found at i:70823035 original size:14 final size:15
Alignment explanation
Indices: 70823018--70823046 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70823008 TCACGAAAAT
70823018 TTCACACAT-ATAAA
1 TTCACACATAATAAA
70823032 TTCACACATAATAAA
1 TTCACACATAATAAA
70823047 CACAAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:70826502 original size:46 final size:48
Alignment explanation
Indices: 70826360--70826618 Score: 218
Period size: 46 Copynumber: 5.5 Consensus size: 48
70826350 TTACAGACAC
* * * *
70826360 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCG-TGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-CGAGGCCGATG
* * * * * *
70826409 CCATGTCCTAGGCATGGCCTTACACT-G-AC-ACATCTTGTA-GCTGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCG-AGGCCGATG
*
70826455 CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCAATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAGGCCGATG
* * * * *
70826501 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCCCAATGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAGGCCGATG
* *
70826547 CCATGTCCCAGACATGGTCTTACACTGGCTCTA-ATAAT-GTGGCCGATG
1 -CATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGAGGCCGATG
70826595 CATGTCCCAGACAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
70826619 AGCACACAAA
Statistics
Matches: 170, Mismatches: 28, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
44 9 0.05
45 15 0.09
46 70 0.41
47 29 0.17
48 24 0.14
49 1 0.01
50 22 0.13
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAGGCCGATG
Found at i:70826567 original size:94 final size:92
Alignment explanation
Indices: 70826451--70826621 Score: 265
Period size: 94 Copynumber: 1.8 Consensus size: 92
70826441 TCTTGTAGCT
*
70826451 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACAT-CTCGAGGCCAATGCATGTCCCAGACA
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTA-ATAAT-GAGGCCAATGCATGTCCCAGACA
70826514 TGTCTTACACTAGCTCTCGTCCCAATGCC
64 TGTCTTACACTAGCTCTCGTCCCAATGCC
* *
70826543 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTAATAATGTGGCCGATGCATGTCCCAGACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTAATAATGAGGCCAATGCATGTCCCAGACA
70826608 TGTCTTACACTAGC
64 TGTCTTACACTAGC
70826622 ACACAAATAA
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
92 4 0.06
93 14 0.19
94 51 0.71
95 3 0.04
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTAATAATGAGGCCAATGCATGTCCCAGACATG
TCTTACACTAGCTCTCGTCCCAATGCC
Found at i:70826598 original size:140 final size:140
Alignment explanation
Indices: 70826360--70826618 Score: 344
Period size: 140 Copynumber: 1.8 Consensus size: 140
70826350 TTACAGACAC
* * * *
70826360 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCAATGCCATGTCCTAGGCATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCT-ACATACCCATGCCAATGCCATGTCCCAGACATG
** *
70826425 GCCTTACACTGACACATCTTGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
65 GCCTTACACTGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCT
70826490 CGAGGCCAATG
130 CGAGGCCAATG
* *
70826501 CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGT-CCCAATGCCGATGCCATGTCCCAGACATG
1 CATGTCCCAGACATGGTCTTACACTAGCTCTACATACCC-ATGCCAATGCCATGTCCCAGACATG
* * * *
70826563 GTCTTACACTGGCTCTAATAATGTGGCCGATGCATGTCCCAGACATGTCTTACACT
65 GCCTTACACTGACAC--ATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACT
70826619 AGCACACAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
137 2 0.02
138 35 0.34
140 51 0.50
141 14 0.14
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (140 bp):
CATGTCCCAGACATGGTCTTACACTAGCTCTACATACCCATGCCAATGCCATGTCCCAGACATGG
CCTTACACTGACACATAATGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC
GAGGCCAATG
Found at i:70833821 original size:49 final size:49
Alignment explanation
Indices: 70833700--70833875 Score: 150
Period size: 49 Copynumber: 3.6 Consensus size: 49
70833690 TAATACCGAT
* * * *
70833700 GCCATGTCCTAGACATGGTCTTACACTGGCTCATC-C--AT-CAAGTTGAT
1 GCCATGTCC-AGACATGGTCTTACACTGACT-ATCACATATCCAGGCTGAC
* *
70833747 GTCATGTCCCAGACATGGTCTTACACTGACTATCGA-A-ATCGAGGCTGAC
1 GCCATGT-CCAGACATGGTCTTACACTGACTATC-ACATATCCAGGCTGAC
* * * *
70833796 GCCATGTCTCAGAAATGGTCTTACACT-AGCTCTCACATATCCATGCTGAT
1 GCCATGTC-CAGACATGGTCTTACACTGA-CTATCACATATCCAGGCTGAC
70833846 GCCATGTCCTAGACATGGTCTTACACTGAC
1 GCCATGTCC-AGACATGGTCTTACACTGAC
70833876 AACTCTATAC
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
46 3 0.03
47 26 0.25
48 7 0.07
49 34 0.32
50 34 0.32
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (49 bp):
GCCATGTCCAGACATGGTCTTACACTGACTATCACATATCCAGGCTGAC
Found at i:70834064 original size:48 final size:48
Alignment explanation
Indices: 70833695--70834107 Score: 282
Period size: 46 Copynumber: 8.7 Consensus size: 48
70833685 GGGTATAATA
* *
70833695 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-CATCAA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCATATCAATG
** * * * * * *
70833742 TTGATGTCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATATCAATG
* * * * * *
70833791 CTGACGCCATGTCTCAGAAATGGTCTTACACTAGCTCTCACATATCCATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT--CATATCAATG
* * * * * *
70833841 CTGATGCCATGTCCTAGACATGGTCTTACACTGACAACTC-TAT-ACGTT
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATATCA-ATG
* *** * **
70833889 CCGATGCCATGTCCCAGACATGGTCTTACAAT-G-AAACATGT-TGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAAT-G
* * *
70833935 CCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCAAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATATCAATG
* * * *
70833981 ACGATG-CATGTTCCAGACAT-GTCTTACACTAGCTCTCATCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATG
*
70834027 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA--ATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCA-AT-G
*
70834075 CCGATGCC-TGTGCCAGACAT-GTCTTACACTGGC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
70834108 ACACAAATAA
Statistics
Matches: 291, Mismatches: 57, Indels: 37
0.76 0.15 0.10
Matches are distributed among these distances:
44 9 0.03
45 18 0.06
46 73 0.25
47 57 0.20
48 64 0.22
49 32 0.11
50 35 0.12
51 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCAATG
Found at i:70834080 original size:94 final size:97
Alignment explanation
Indices: 70833695--70834104 Score: 302
Period size: 94 Copynumber: 4.3 Consensus size: 97
70833685 GGGTATAATA
* * ** *
70833695 CCGATGCCATG-TCCTAGACATGGTCTTACACTGGCTCATC-CATCAA-GTTGATGTCATGTCCC
1 CCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTC-TCATATCAATGCCGATGCCATGTCCC
*
70833757 AGACATGGTCTTACACTGACTATCGA-AATCGAGG
64 AGACATGGTCTTACACTGACTCTC-ATAATCGAGG
* * * * *
70833791 CTGACGCCATG-TCTCAGAAATGGTCTTACACTAGCTCTCACATATCCATGCTGATGCCATGTCC
1 CCGATGCCATGTTC-CAGACATGGTCTTACACTAGCTCT--CATATCAATGCCGATGCCATGTCC
* * **
70833855 TAGACATGGTCTTACACTGACAACTC-T-ATACG-TT
63 CAGACATGGTCTTACACTGAC-TCTCATAAT-CGAGG
* * *** * **
70833889 CCGATGCCATGTCCCAGACATGGTCTTACAAT-G-AAACATGT-TGTAGCCGATG-CATGTCCCA
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATCAAT-GCCGATGCCATGTCCCA
* * * *
70833950 AACAT-GTCTTACACTGGCT-TACAT-CTCAAGG
65 GACATGGTCTTACACTGACTCT-CATAATCGAGG
* *
70833981 ACGATG-CATGTTCCAGACAT-GTCTTACACTAGCTCTCATCTCAATGCCGATGCCATGTCCCAG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTCCCAG
* *
70834044 ACATGGTCTTACACTGGCTCTCATAAT-GTGG
66 ACATGGTCTTACACTGACTCTCATAATCGAGG
*
70834075 CCGATGCC-TGTGCCAGACAT-GTCTTACACT
1 CCGATGCCATGTTCCAGACATGGTCTTACACT
70834105 GGCACACAAA
Statistics
Matches: 245, Mismatches: 48, Indels: 44
0.73 0.14 0.13
Matches are distributed among these distances:
90 10 0.04
91 16 0.07
92 30 0.12
93 27 0.11
94 55 0.22
95 4 0.02
96 31 0.13
97 3 0.01
98 31 0.13
99 36 0.15
100 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (97 bp):
CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCATATCAATGCCGATGCCATGTCCCAG
ACATGGTCTTACACTGACTCTCATAATCGAGG
Found at i:70839642 original size:40 final size:40
Alignment explanation
Indices: 70839540--70839723 Score: 174
Period size: 40 Copynumber: 4.6 Consensus size: 40
70839530 AAATTGAATG
* * * * *
70839540 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
70839580 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
70839620 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCCAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
70839660 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
70839700 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
70839724 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.03
40 114 0.95
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:70842776 original size:15 final size:14
Alignment explanation
Indices: 70842739--70842770 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
70842729 GAAAAATAAA
*
70842739 TTTTCAGTTTGTAT
1 TTTTCAGTTTCTAT
70842753 TTTTCAGTTTCTAT
1 TTTTCAGTTTCTAT
70842767 TTTT
1 TTTT
70842771 TTAGTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.69
Consensus pattern (14 bp):
TTTTCAGTTTCTAT
Found at i:70845725 original size:42 final size:42
Alignment explanation
Indices: 70845678--70845787 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
70845668 AATAAGATAC
*
70845678 CAATGCCATGTCCCAGACGTGGTCTTACATAGAATTTCACAT
1 CAATGCCATGTCCCAGACGTGGTCTTACATAGAATCTCACAT
* ** ** **
70845720 CAATGCCATATCCCAGATATGGTCTTATGTAGAATCTCATTT
1 CAATGCCATGTCCCAGACGTGGTCTTACATAGAATCTCACAT
*
70845762 CAATGCCATGTCCTAGACGTGGTCTT
1 CAATGCCATGTCCCAGACGTGGTCTT
70845788 TCACGAAATC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACGTGGTCTTACATAGAATCTCACAT
Found at i:70845798 original size:42 final size:42
Alignment explanation
Indices: 70845678--70845806 Score: 129
Period size: 42 Copynumber: 3.1 Consensus size: 42
70845668 AATAAGATAC
* * * *
70845678 CAATGCCATGTCCCAGACGTGGTCTTACATAGAATTTCACAT
1 CAATGCCATGTCCCAGACGTGGTCTTTCAGAGAATCTCATAT
* ** *
70845720 CAATGCCATATCCCAGATATGGTC-TT-ATGTAGAATCTCATTT
1 CAATGCCATGTCCCAGACGTGGTCTTTCA-G-AGAATCTCATAT
*
70845762 CAATGCCATGTCCTAGACGTGGTCTTTCACGA-AATCTCATAT
1 CAATGCCATGTCCCAGACGTGGTCTTTCA-GAGAATCTCATAT
70845804 CAA
1 CAA
70845807 CGCAATTTCC
Statistics
Matches: 69, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
40 1 0.01
41 1 0.01
42 62 0.90
43 3 0.04
44 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
CAATGCCATGTCCCAGACGTGGTCTTTCAGAGAATCTCATAT
Found at i:70845850 original size:84 final size:84
Alignment explanation
Indices: 70845674--70845851 Score: 189
Period size: 84 Copynumber: 2.1 Consensus size: 84
70845664 ACACAATAAG
* * * * *
70845674 ATACCAATGCCATGTCCCAGACGTGGTCTTACATAGAATTTCACATCAATGCCATATCCCAGATA
1 ATACCAATGCCATGTCCCAGACGTGGTCTTACAGAGAATCTCACATCAACGCAATATCCCAAATA
** *
70845739 TGGTCTTATGTAGAATCTC
66 TGGTCTTACATAGAATATC
** * * * *
70845758 ATTTCAATGCCATGTCCTAGACGTGGTCTTTCACGA-AATCTCATATCAACGCAATTTCCCAAAT
1 ATACCAATGCCATGTCCCAGACGTGGTCTTACA-GAGAATCTCACATCAACGCAATATCCCAAAT
*
70845822 ATGGTCTTACATGGTAATAT-
65 ATGGTCTTACATAG-AATATC
70845842 ATACCAATGC
1 ATACCAATGC
70845852 TGGTGCCATA
Statistics
Matches: 75, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
84 70 0.93
85 5 0.07
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (84 bp):
ATACCAATGCCATGTCCCAGACGTGGTCTTACAGAGAATCTCACATCAACGCAATATCCCAAATA
TGGTCTTACATAGAATATC
Found at i:70846231 original size:30 final size:30
Alignment explanation
Indices: 70846197--70846255 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
70846187 TCCATAAATC
*
70846197 ATCTTTGAAAAAATTACAATTTTGCCCCTA
1 ATCTTTCAAAAAATTACAATTTTGCCCCTA
* * * *
70846227 ATCTTTCACATACTTACACTTTTGCCCCT
1 ATCTTTCAAAAAATTACAATTTTGCCCCT
70846256 TAAGCTCGTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.05, T:0.39
Consensus pattern (30 bp):
ATCTTTCAAAAAATTACAATTTTGCCCCTA
Found at i:70848613 original size:28 final size:28
Alignment explanation
Indices: 70848581--70848649 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
70848571 GCGTAGATCA
70848581 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
70848609 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
70848637 CGATA-TACCCCTA
1 CGAAATTACCCCTA
70848650 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:70855274 original size:13 final size:14
Alignment explanation
Indices: 70855251--70855288 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
70855241 AGTGAAAATA
*
70855251 AATTTTTAGTTTCT
1 AATTTTCAGTTTCT
70855265 -ATTTTCAGTTTCT
1 AATTTTCAGTTTCT
70855278 AATTTGTCAGT
1 AATTT-TCAGT
70855289 CGATTTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 12 0.57
14 4 0.19
15 5 0.24
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.58
Consensus pattern (14 bp):
AATTTTCAGTTTCT
Found at i:70856396 original size:36 final size:37
Alignment explanation
Indices: 70856356--70856473 Score: 107
Period size: 36 Copynumber: 3.1 Consensus size: 37
70856346 AATAAATTTA
*
70856356 ATATTAAATT-ATATTTAATACTTATCTTGAAGTATT
1 ATATTAAATTAATATTTAATAATTATCTTGAAGTATT
* * *
70856392 ATATTAATTTAATATTAAAGTAATTTTCTT-AA-TATT
1 ATATTAAATTAATATTTAA-TAATTATCTTGAAGTATT
* * *
70856428 AAATTAAATTAAATACTATAATATTTATCTTGATAAGTATT
1 ATATTAAATT-AATA-TTTAATAATTATCTTG--AAGTATT
70856469 ATATT
1 ATATT
70856474 TATTTAGTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
36 21 0.33
37 21 0.33
38 11 0.17
40 2 0.03
41 8 0.13
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (37 bp):
ATATTAAATTAATATTTAATAATTATCTTGAAGTATT
Found at i:70857104 original size:25 final size:24
Alignment explanation
Indices: 70857071--70857129 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
70857061 ATAAAACAAC
* *
70857071 AAAAAGAAAATATATTCTAAAAAG
1 AAAAAGAAAACATAATCTAAAAAG
* *
70857095 AAAATAGAAAACCTAATCTAAAATG
1 AAAA-AGAAAACATAATCTAAAAAG
70857120 AAAAAAGAAA
1 -AAAAAGAAA
70857130 GAAAGAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 4 0.14
25 21 0.72
26 4 0.14
ACGTcount: A:0.68, C:0.07, G:0.08, T:0.17
Consensus pattern (24 bp):
AAAAAGAAAACATAATCTAAAAAG
Found at i:70858572 original size:37 final size:37
Alignment explanation
Indices: 70858522--70858606 Score: 161
Period size: 37 Copynumber: 2.3 Consensus size: 37
70858512 TTATTACGAA
70858522 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
70858559 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
70858596 GTCTCACCCGG
1 GTCTTACCCGG
70858607 AACATATTCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:70858844 original size:47 final size:47
Alignment explanation
Indices: 70858702--70858918 Score: 310
Period size: 47 Copynumber: 4.5 Consensus size: 47
70858692 TTTTACATTA
*
70858702 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCG
1 GCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCG
70858751 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATAT--ATACACTTTCACATTCATCACATCG
*
70858800 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTG
1 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
* * * *
70858847 GCCA-TACGGCCTTATCACACATATGCACTTTCGCATTCATCACATTG
1 GCCATTA-GGCCTTATCACATATATACACTTTCACATTCATCACATCG
* *
70858894 GCCATTCGGCCTTATCACACATATA
1 GCCATTAGGCCTTATCACATATATA
70858919 TGTATATCAT
Statistics
Matches: 157, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
46 2 0.01
47 90 0.57
48 1 0.01
49 64 0.41
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (47 bp):
GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
Found at i:70858910 original size:22 final size:22
Alignment explanation
Indices: 70858838--70858912 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
70858828 TTTCACATTC
*
70858838 ATCACATTGGCCATACGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
70858860 ATCACACATAT-GCACTTTC-GCATT
1 AT--CACAT-TGGC-CATTCGGCCTT
70858884 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70858907 ATCACA
1 ATCACA
70858913 CATATATGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
22 13 0.32
23 11 0.27
24 11 0.27
25 6 0.15
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.29
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70858919 original size:96 final size:97
Alignment explanation
Indices: 70858696--70858919 Score: 321
Period size: 96 Copynumber: 2.3 Consensus size: 97
70858686 CATATATTTT
* *
70858696 ACATTAGCCATTAGGCCTTATCACATATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
*
70858761 CTTATCACATATACATACACTTTCACATTCATC
66 CTTATCACACATA-ATACACTTTCACATTCATC
* * *
70858794 ACATCGGCCATTAGGCCTTAT--CACATATATACACTTTCACATTCATCACATTGGCCA-TACGG
1 ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTA-GG
* *
70858856 CCTTATCACACAT-ATGCACTTTCGCATTCATC
65 CCTTATCACACATAATACACTTTCACATTCATC
*
70858888 ACATTGGCCATTCGGCCTTATCACACATATAT
1 ACATTGGCCATTAGGCCTTATCACACATATAT
70858920 GTATATCATA
Statistics
Matches: 113, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
94 36 0.32
95 2 0.02
96 56 0.50
98 19 0.17
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (97 bp):
ACATTGGCCATTAGGCCTTATCACACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
CTTATCACACATAATACACTTTCACATTCATC
Found at i:70861267 original size:40 final size:39
Alignment explanation
Indices: 70861201--70861351 Score: 153
Period size: 40 Copynumber: 3.8 Consensus size: 39
70861191 AAATTGAATG
* * *
70861201 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
* * ***
70861240 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GGTAATT
*
70861280 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCG-GTAATT
* *
70861320 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
70861352 ACATGGTTAT
Statistics
Matches: 92, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
39 16 0.17
40 74 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGGTAATT
Found at i:70861365 original size:40 final size:39
Alignment explanation
Indices: 70861238--70861367 Score: 161
Period size: 40 Copynumber: 3.3 Consensus size: 39
70861228 ATGCTGGAAA
* *
70861238 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAA-TGG
* * * **
70861278 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-AATGG
*
70861318 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA-ATGG
70861358 TTATATCCGG
1 TTATATCCGG
70861368 TTATATTCCG
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.97
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCAATGG
Found at i:70868435 original size:30 final size:30
Alignment explanation
Indices: 70868380--70868510 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
70868370 ATAGTGAATC
*
70868380 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
70868409 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
70868439 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
70868467 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
70868497 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70868511 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:70868490 original size:58 final size:58
Alignment explanation
Indices: 70868379--70868510 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
70868369 TATAGTGAAT
* * * * *
70868379 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
70868438 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
70868496 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
70868511 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:70876384 original size:30 final size:30
Alignment explanation
Indices: 70876329--70876459 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
70876319 ATAGTGAATC
*
70876329 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
70876358 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
70876388 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
70876416 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
70876446 CGCACACTTAGTGC
1 CGCACACTTAGTGC
70876460 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:70876439 original size:58 final size:58
Alignment explanation
Indices: 70876328--70876459 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
70876318 TATAGTGAAT
* * * * *
70876328 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
70876387 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
70876445 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
70876460 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:70884496 original size:16 final size:16
Alignment explanation
Indices: 70884476--70884514 Score: 62
Period size: 15 Copynumber: 2.4 Consensus size: 16
70884466 TACTTAATCG
70884476 ATTTTTTGA-TTTCTT
1 ATTTTTTGATTTTCTT
70884491 ATTTTTTGATTTTCTT
1 ATTTTTTGATTTTCTT
70884507 ATTATTTT
1 ATT-TTTT
70884515 TAGTATAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 9 0.41
16 9 0.41
17 4 0.18
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.74
Consensus pattern (16 bp):
ATTTTTTGATTTTCTT
Found at i:70886583 original size:46 final size:46
Alignment explanation
Indices: 70886530--70886794 Score: 204
Period size: 46 Copynumber: 5.7 Consensus size: 46
70886520 TGGGCATCTG
* * *
70886530 AACTCGTTGATTTGAGTCCAAGTTCACTTATGGATGCGAACATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCA
* *
70886576 AACTCGTTGAGTTGAGTCCGAGTT--C-T-TGAGATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CATCCA
*
70886623 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCA
* * * * *
70886669 AACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CATCCA
* * ** * *
70886716 AGCTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGTGAAC-GCCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCC-A
* * *
70886762 AGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70886795 GCGGGTTACA
Statistics
Matches: 179, Mismatches: 23, Indels: 34
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.01
43 12 0.07
44 1 0.01
45 6 0.03
46 82 0.46
47 56 0.31
48 4 0.02
49 1 0.01
50 13 0.07
51 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACATCCA
Found at i:70886631 original size:47 final size:47
Alignment explanation
Indices: 70886570--70886740 Score: 208
Period size: 47 Copynumber: 3.7 Consensus size: 47
70886560 TGGATGCGAA
70886570 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCTTGAGATGTAACTAGG
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCTTGAGATGTAACTAGG
* *
70886617 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTT-ATGGATGCAA--A--
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTT--CTTGA--GATGTAACTAGG
* * *
70886663 CGTCCAAACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGG
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCTTGAGATGTAACTAGG
* *
70886710 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 CATCCAAACTCGTTGAGTTGAGTCCGAGTTC
70886741 ACTTAAGGAT
Statistics
Matches: 104, Mismatches: 11, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 27 0.26
47 56 0.54
48 2 0.02
49 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (47 bp):
CATCCAAACTCGTTGAGTTGAGTCCGAGTTCTTGAGATGTAACTAGG
Found at i:70886681 original size:93 final size:93
Alignment explanation
Indices: 70886522--70886787 Score: 399
Period size: 93 Copynumber: 2.9 Consensus size: 93
70886512 TGGATATTTG
* * * *
70886522 GGCATCTGAACTCGTTGATTTGAGTCCAAGTTCACTTATGGATGCGAACATCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAG
*
70886587 TTGAGTCCGAGTTCTTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
70886615 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAG
*
70886680 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * * *
70886708 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAAGGATGTGAACG-CCTGAGCTCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-AAACTCGTTGA
70886772 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
70886788 CTTATGGGCG
Statistics
Matches: 157, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 2 0.01
93 155 0.99
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:70891911 original size:98 final size:97
Alignment explanation
Indices: 70891772--70891949 Score: 234
Period size: 98 Copynumber: 1.8 Consensus size: 97
70891762 ACTTAAAGCT
* *
70891772 AGTGTAAGACATGTCTGGCACATGCATCGGCCTCGAGATATGCAAGCT-AGTGTAAAACCTATCT
1 AGTGTAAGACATATCTGGCACATGCATCGGCCTCGAGATATG-AAGCTCAATGTAAAACCTATCT
70891836 GGGACATAGCATCGACACCGATAGATGAGAGCC
65 GGGACATAGCATCGACACCGATAGATGAGAGCC
* * * * * *
70891869 AGTGTAAGACCTATCTGGGACATGGCATCGGCCT-GAATATATGAAGGTCAATGTAAGACCTGTC
1 AGTGTAAGACATATCTGGCACAT-GCATCGGCCTCG-AGATATGAAGCTCAATGTAAAACCTATC
*
70891933 TGGGACATGGCATCGAC
64 TGGGACATAGCATCGAC
70891950 TTAGATATGT
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
97 25 0.36
98 44 0.64
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (97 bp):
AGTGTAAGACATATCTGGCACATGCATCGGCCTCGAGATATGAAGCTCAATGTAAAACCTATCTG
GGACATAGCATCGACACCGATAGATGAGAGCC
Found at i:70891924 original size:49 final size:48
Alignment explanation
Indices: 70891772--70891947 Score: 169
Period size: 49 Copynumber: 3.6 Consensus size: 48
70891762 ACTTAAAGCT
* * * * *
70891772 AGTGTAAGACATGTCTGGCACAT-GCATCGGCCTCGAGATATGCAAGCT-
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCCT-GATATATG-AAGGTC
* * * * * *
70891820 AGTGTAAAACCTATCTGGGACATAGCATCGACACCGATAGATG-AGAGCC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGC-CTGATATATGAAG-GTC
70891869 AGTGTAAGACCTATCTGGGACATGGCATCGGCCTGAATATATGAAGGTC
1 AGTGTAAGACCTATCTGGGACATGGCATCGGCCTG-ATATATGAAGGTC
* *
70891918 AATGTAAGACCTGTCTGGGACATGGCATCG
1 AGTGTAAGACCTATCTGGGACATGGCATCG
70891948 ACTTAGATAT
Statistics
Matches: 104, Mismatches: 18, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
47 2 0.02
48 21 0.20
49 78 0.75
50 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCTATCTGGGACATGGCATCGGCCTGATATATGAAGGTC
Found at i:70901161 original size:40 final size:40
Alignment explanation
Indices: 70901108--70901183 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
70901098 CTAAAAAAAA
* * *
70901108 TGGCATTTAGTGTGCGGTTCGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTAGAAATAGCTTCGGCTAAATG
* *
70901148 TGGCACTTGGTGTGCGATTAGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTAGAAATAGCTTCGGCTA
70901184 TATATGTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.32
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTAGAAATAGCTTCGGCTAAATG
Found at i:70903298 original size:48 final size:48
Alignment explanation
Indices: 70903218--70903352 Score: 189
Period size: 48 Copynumber: 2.8 Consensus size: 48
70903208 TACTAGGGTT
* * * *
70903218 ATGAGAGCTAGTGTAAGACCATGTCTGCAACATGGCATCGGCCTTGAC
1 ATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGAC
* * * *
70903266 ATGTGAGCTGGTGTAAGACCATGTTTGGAACATGGCATCGACATTTAT
1 ATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGAC
*
70903314 ATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATC
1 ATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATC
70903353 AGCATCTTAC
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 76 1.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (48 bp):
ATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGAC
Found at i:70915349 original size:55 final size:55
Alignment explanation
Indices: 70915272--70915407 Score: 202
Period size: 55 Copynumber: 2.5 Consensus size: 55
70915262 GTAAGTCAGG
* * *
70915272 CTCGAACACAGCCAAGGAACACGGGCGTGTAACTAA-CTGTGTGGCCAAAGTCAAA
1 CTCGACCACGGCCAAGGCACACGGGCGTGTAACTAATC-GTGTGGCCAAAGTCAAA
* *
70915327 CTCGACCACGGCCAAGGCACACGGGCGTGTAGCTAATCGTGTGGCCAAAGTCAGA
1 CTCGACCACGGCCAAGGCACACGGGCGTGTAACTAATCGTGTGGCCAAAGTCAAA
*
70915382 CTCGACCACGGCCAAGGCACATGGGC
1 CTCGACCACGGCCAAGGCACACGGGC
70915408 ATGTTTTGTG
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
55 73 0.99
56 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.29, T:0.13
Consensus pattern (55 bp):
CTCGACCACGGCCAAGGCACACGGGCGTGTAACTAATCGTGTGGCCAAAGTCAAA
Found at i:70917621 original size:14 final size:15
Alignment explanation
Indices: 70917599--70917628 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
70917589 GAATATCAAA
70917599 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
70917614 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
70917628 A
1 A
70917629 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:70918003 original size:13 final size:13
Alignment explanation
Indices: 70917985--70918010 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70917975 GCTCGGTAGG
70917985 GACACGCCCGTGT
1 GACACGCCCGTGT
70917998 GACACGCCCGTGT
1 GACACGCCCGTGT
70918011 ACGATTACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:70940059 original size:48 final size:48
Alignment explanation
Indices: 70940007--70940195 Score: 288
Period size: 48 Copynumber: 3.9 Consensus size: 48
70939997 GAATTCGCAC
* **
70940007 ATCATCATCGATGCCATGTCCCAAACATGGTCTTACATTGGCACACAT
1 ATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCACACAT
* * *
70940055 ATCATCGCCGATGCCATGTCTCAGACATGGTCTTACACAGGCACACAT
1 ATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCACACAT
** *
70940103 ATCATTGCCGATGCCATGTCCCAAACATGGTCTTATACAGGCACACAT
1 ATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCACACAT
*
70940151 ATCATCACCGATGCCATGTCCCAGACATGGTCTTACACAGGCACA
1 ATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCACA
70940196 TTTAGCACGG
Statistics
Matches: 127, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 127 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (48 bp):
ATCATCACCGATGCCATGTCCCAAACATGGTCTTACACAGGCACACAT
Found at i:70940146 original size:96 final size:96
Alignment explanation
Indices: 70940015--70940195 Score: 317
Period size: 96 Copynumber: 1.9 Consensus size: 96
70940005 ACATCATCAT
** * *
70940015 CGATGCCATGTCCCAAACATGGTCTTACATTGGCACACATATCATCGCCGATGCCATGTCTCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGA
70940080 CATGGTCTTACACAGGCACACATATCATTGC
66 CATGGTCTTACACAGGCACACATATCATTGC
*
70940111 CGATGCCATGTCCCAAACATGGTCTTATACAGGCACACATATCATCACCGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGA
70940176 CATGGTCTTACACAGGCACA
66 CATGGTCTTACACAGGCACA
70940196 TTTAGCACGG
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
96 80 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (96 bp):
CGATGCCATGTCCCAAACATGGTCTTACACAGGCACACATATCATCACCGATGCCATGTCCCAGA
CATGGTCTTACACAGGCACACATATCATTGC
Found at i:70941356 original size:31 final size:31
Alignment explanation
Indices: 70941321--70941379 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
70941311 CCATAAAATG
* *
70941321 ATTATTTCTATCTCAGATTTTTGGTCTCAAA
1 ATTATTTCTATCTAAGACTTTTGGTCTCAAA
* *
70941352 ATTATTTTTATTTAAGACTTTTGGTCTC
1 ATTATTTCTATCTAAGACTTTTGGTCTC
70941380 GAAACCACTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.53
Consensus pattern (31 bp):
ATTATTTCTATCTAAGACTTTTGGTCTCAAA
Found at i:70941453 original size:24 final size:24
Alignment explanation
Indices: 70941395--70941455 Score: 104
Period size: 24 Copynumber: 2.5 Consensus size: 24
70941385 CACTGTTCTG
* *
70941395 ACTTAAGGATGTTACAATTTTCCC
1 ACTTAGGGATTTTACAATTTTCCC
70941419 ACTTAGGGATTTTACAATTTTCCC
1 ACTTAGGGATTTTACAATTTTCCC
70941443 ACTTAGGGATTTT
1 ACTTAGGGATTTT
70941456 GGTCCCAGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (24 bp):
ACTTAGGGATTTTACAATTTTCCC
Found at i:70952363 original size:48 final size:48
Alignment explanation
Indices: 70952289--70952423 Score: 175
Period size: 48 Copynumber: 2.8 Consensus size: 48
70952279 CAATTAAAGT
* *
70952289 ACCGATGCCATGTCCCCAACATGGTCTTACA-T-GAATCCACATATAATC
1 ACCGATGCCATGTCCCAAACATGGTCTTACACTGGCA--CACATATAATC
* *
70952337 ACTGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCATC
1 ACCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATAATC
* * *
70952385 ACCGATGCCATGTCCCAGACACGGTCTTACACAGGCACA
1 ACCGATGCCATGTCCCAAACATGGTCTTACACTGGCACA
70952424 TTTAGCATGG
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
48 74 0.96
49 1 0.01
50 2 0.03
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.22
Consensus pattern (48 bp):
ACCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATAATC
Found at i:70953826 original size:53 final size:55
Alignment explanation
Indices: 70953758--70953902 Score: 195
Period size: 53 Copynumber: 2.7 Consensus size: 55
70953748 TTCCTTTTTA
*
70953758 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
* * * *
70953811 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGT
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
** * *
70953866 AGTTTATCAATGCCATGTCTTGACATGGTCTTACATG
1 AACTTACCATTGCCATGTCTTGACATGGTCTTACATG
70953903 ATTTCTTACA
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 47 0.60
54 1 0.01
55 30 0.38
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.37
Consensus pattern (55 bp):
AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATCGT
Found at i:70953911 original size:12 final size:12
Alignment explanation
Indices: 70953894--70953919 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
70953884 CTTGACATGG
70953894 TCTTACATGATT
1 TCTTACATGATT
70953906 TCTTACATGATT
1 TCTTACATGATT
70953918 TC
1 TC
70953920 CTTGCCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.19, G:0.08, T:0.50
Consensus pattern (12 bp):
TCTTACATGATT
Found at i:70958572 original size:28 final size:28
Alignment explanation
Indices: 70958527--70958594 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
70958517 TTTAAAACCC
*
70958527 TAGGGGT-ATATCGGTAATTATGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
*
70958554 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTATGCTCTT
70958582 TA-GGGTAATTTCG
1 TAGGGGTAATTTCG
70958595 TGATCTACGC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 18 0.47
28 20 0.53
ACGTcount: A:0.21, C:0.10, G:0.26, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTATGCTCTT
Found at i:70960245 original size:20 final size:20
Alignment explanation
Indices: 70960220--70960257 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
70960210 CCACATCCAA
*
70960220 TACAAAATTTTAAAAATCTT
1 TACAAAATATTAAAAATCTT
*
70960240 TACAAAATATTGAAAATC
1 TACAAAATATTAAAAATC
70960258 GCGAATAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TACAAAATATTAAAAATCTT
Found at i:70963585 original size:46 final size:48
Alignment explanation
Indices: 70963463--70963592 Score: 171
Period size: 46 Copynumber: 2.8 Consensus size: 48
70963453 TGTAACCCGC
*
70963463 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAG-T-CAT
* * *
70963513 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG-CAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
70963556 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70963593 TGCCCAAATA
Statistics
Matches: 71, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
43 3 0.04
44 1 0.01
45 2 0.03
46 32 0.45
47 30 0.42
48 2 0.03
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCCTAGTCAT
Found at i:70963611 original size:46 final size:45
Alignment explanation
Indices: 70963468--70963611 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
70963458 CCCGCCCATA
* *
70963468 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * * *
70963516 A-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
70963561 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
70963607 AGTGA
1 AGTGA
70963612 CATGTCACTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 37 0.47
47 31 0.40
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:70968851 original size:40 final size:40
Alignment explanation
Indices: 70968725--70968852 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 40
70968715 CAATTGAATG
* * * * * ***
70968725 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
* *
70968765 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGCGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
* *
70968805 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-ACGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTA-GCGGTT
70968845 ATATCCGG
1 ATATCCGG
70968853 TTGTATTCCG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 4 0.06
40 67 0.94
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGCGGTT
Found at i:70973939 original size:40 final size:39
Alignment explanation
Indices: 70973812--70973941 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
70973802 ATGCTGGAAA
* *
70973812 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* * *
70973852 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTGG
*
70973892 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTGG
70973932 TTATATCCGG
1 TTATATCCGG
70973942 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:70977570 original size:28 final size:28
Alignment explanation
Indices: 70977519--70977587 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
70977509 TTTAAAACCC
* *
70977519 TAGGGGT-ATATCGGTAATTATGCTCTT
1 TAGGGGTAATTTCGATAATTATGCTCTT
*
70977546 TAGGGGTAATTTCGATAATTTTGCTCTT
1 TAGGGGTAATTTCGATAATTATGCTCTT
70977574 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
70977588 TGATCTACGC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.42
Consensus pattern (28 bp):
TAGGGGTAATTTCGATAATTATGCTCTT
Found at i:70980568 original size:21 final size:21
Alignment explanation
Indices: 70980542--70980585 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
70980532 GTGTACTGTA
* * *
70980542 TGGCAGCTTTACTGCAATTAC
1 TGGCAGCTCTACTACAACTAC
70980563 TGGCAGCTCTACTACAACTAC
1 TGGCAGCTCTACTACAACTAC
70980584 TG
1 TG
70980586 AACAGTGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (21 bp):
TGGCAGCTCTACTACAACTAC
Found at i:70981718 original size:37 final size:37
Alignment explanation
Indices: 70981664--70981760 Score: 158
Period size: 37 Copynumber: 2.6 Consensus size: 37
70981654 TAGTCCCCAT
* *
70981664 ACGTAGTTATCGGGTCTTACCCGGACAAAATCTCTAC
1 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAC
* *
70981701 ACGTAGTCATCGAGTCTTACCCGGACATAATCTCCAC
1 ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAC
70981738 ACGTAGTCATCGGGTCTTACCCG
1 ACGTAGTCATCGGGTCTTACCCG
70981761 TAATATCTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (37 bp):
ACGTAGTCATCGGGTCTTACCCGGACAAAATCTCCAC
Found at i:70981961 original size:48 final size:48
Alignment explanation
Indices: 70981903--70982821 Score: 1498
Period size: 48 Copynumber: 19.0 Consensus size: 48
70981893 ATATACACAC
* * * * *
70981903 ATCTCCTACATATTTCACATTAGCCATTCAGCTTTACTAAATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
70981951 ATCTCATACATATTTCACACTAGCCATTCTTCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70981999 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
70982047 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC----ATATACAT
* *
70982099 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70982147 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70982195 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
70982243 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70982291 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70982339 ATCTCATACATATTTCACACTAGCCATTCGG-TTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70982386 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
70982434 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70982482 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
70982530 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCAC--ATATACAT
* *
70982580 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
70982628 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
70982676 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70982724 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * * *
70982772 ATCTCATACAGATATCACACTAGCCATTTGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
70982820 AT
1 AT
70982822 ATTTATCTTG
Statistics
Matches: 819, Mismatches: 45, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
47 47 0.06
48 682 0.83
50 45 0.05
52 45 0.05
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:70989375 original size:26 final size:28
Alignment explanation
Indices: 70989345--70989413 Score: 97
Period size: 26 Copynumber: 2.5 Consensus size: 28
70989335 ATAATAAGTC
*
70989345 CGCACACTTAGTGCTATA-AATC-AGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
70989371 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
70989399 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70989414 GTACAAATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
26 17 0.46
27 4 0.11
28 16 0.43
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70989391 original size:28 final size:27
Alignment explanation
Indices: 70989345--70989413 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 27
70989335 ATAATAAGTC
*
70989345 CGCACACTTAGTGC-TATAAATC-AGCT
1 CGCACACTTAGTGCTTAT-AATCAAACT
* *
70989371 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCT-TATAATCAAACT
70989399 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70989414 GTACAAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 13 0.36
27 4 0.11
28 19 0.53
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTTATAATCAAACT
Found at i:70996047 original size:75 final size:75
Alignment explanation
Indices: 70995928--70996098 Score: 212
Period size: 75 Copynumber: 2.4 Consensus size: 75
70995918 CATGGCAAAG
** *
70995928 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
70995987 CCATACTGAGC
65 CCATACCGAGC
70995998 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
70996063 CATACCGAGT
66 CATACCGAGC
***
70996073 TAAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
70996099 TGAGGAAACC
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 5 0.06
75 60 0.69
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:70996066 original size:35 final size:35
Alignment explanation
Indices: 70995931--70996096 Score: 174
Period size: 35 Copynumber: 4.6 Consensus size: 35
70995921 GGCAAAGTGT
* **
70995931 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
70995966 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
70996001 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
70996041 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
*
70996076 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
70996097 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
35 85 0.73
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:71003503 original size:75 final size:75
Alignment explanation
Indices: 71003384--71003555 Score: 205
Period size: 75 Copynumber: 2.4 Consensus size: 75
71003374 CATGGCAAAG
** *
71003384 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
71003443 CCATACTGAGC
65 CCATACCGAGC
71003454 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
71003519 CATACCGAGT
66 CATACCGAGC
***
71003529 TAAAAAAATGTAGGTATGGTATT-TCAA
1 T-GTGAAATGTAGGTATGGTATTATCAA
71003556 TGAGGAAAAC
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
70 18 0.21
73 4 0.05
74 1 0.01
75 46 0.53
76 18 0.21
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:71003522 original size:35 final size:35
Alignment explanation
Indices: 71003387--71003553 Score: 167
Period size: 35 Copynumber: 4.6 Consensus size: 35
71003377 GGCAAAGTGT
* **
71003387 GAAATGTAGGTATGGTATCAT-CCATACTGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCCATACTGAGTTAA
* **
71003422 GAAATGTAGGTATGGTATTAT-CCATACTGAGCTGT
1 GAAATGTAGGTATGGTATT-TCCCATACTGAGTTAA
71003457 GAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TC----CCATACTGAGTTAA
* *
71003497 GAAATGTAGGTATGGCATTTCCCATACCGAGTTAAA
1 GAAATGTAGGTATGGTATTTCCCATACTGAGTT-AA
*
71003533 AAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
71003554 AATGAGGAAA
Statistics
Matches: 116, Mismatches: 9, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
35 64 0.55
36 21 0.18
39 2 0.02
40 29 0.25
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.33
Consensus pattern (35 bp):
GAAATGTAGGTATGGTATTTCCCATACTGAGTTAA
Found at i:71003545 original size:36 final size:35
Alignment explanation
Indices: 71003483--71003553 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 35
71003473 ATTATCAAAT
* *
71003483 CCATACTGAGTTAAGAAATGTAGGTATGGCATTTC
1 CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
*
71003518 CCATACCGAGTTAAAAAAATGTAGGTATGGTATTTC
1 CCATACCGAGTT-AAAAAATGTAGGTATGGCATTTC
71003554 AATGAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.34
36 21 0.66
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (35 bp):
CCATACCGAGTTAAAAAATGTAGGTATGGCATTTC
Found at i:71004774 original size:15 final size:16
Alignment explanation
Indices: 71004730--71004775 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
71004720 TGCTATGCAT
*
71004730 AGTAAATGGAATGGAA
1 AGTAAATGAAATGGAA
71004746 AGTAAATGAAATGGAA
1 AGTAAATGAAATGGAA
*
71004762 AGTAAGT-AAATGGA
1 AGTAAATGAAATGGA
71004776 GTGGTTCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.52, C:0.00, G:0.28, T:0.20
Consensus pattern (16 bp):
AGTAAATGAAATGGAA
Found at i:71009188 original size:16 final size:16
Alignment explanation
Indices: 71009167--71009205 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
71009157 TAGAAATTGA
71009167 AGAAGTTCAGAAAAAT
1 AGAAGTTCAGAAAAAT
*
71009183 AGAAGTTCAGAAGAAT
1 AGAAGTTCAGAAAAAT
*
71009199 AAAAGTT
1 AGAAGTT
71009206 GGGGTTAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.54, C:0.05, G:0.21, T:0.21
Consensus pattern (16 bp):
AGAAGTTCAGAAAAAT
Found at i:71019794 original size:5 final size:5
Alignment explanation
Indices: 71019786--71019822 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
71019776 CTTGTTTTTT
71019786 ATTTC ATTTC ATTTC ATTTC ATTTC ATTT- ATTT- ATTT
1 ATTTC ATTTC ATTTC ATTTC ATTTC ATTTC ATTTC ATTT
71019823 TCTTTTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.25
5 24 0.75
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.65
Consensus pattern (5 bp):
ATTTC
Found at i:71021482 original size:12 final size:12
Alignment explanation
Indices: 71021455--71021491 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
71021445 CCATTTATCA
71021455 TTTATTTTT-T-
1 TTTATTTTTATG
71021465 TTTATTTTTATG
1 TTTATTTTTATG
*
71021477 TTTATTGTTATG
1 TTTATTTTTATG
71021489 TTT
1 TTT
71021492 TTTGGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 9 0.38
11 1 0.04
12 14 0.58
ACGTcount: A:0.14, C:0.00, G:0.08, T:0.78
Consensus pattern (12 bp):
TTTATTTTTATG
Found at i:71021638 original size:22 final size:22
Alignment explanation
Indices: 71021613--71021672 Score: 120
Period size: 22 Copynumber: 2.7 Consensus size: 22
71021603 TGCTTATGAG
71021613 ATTTAGGGCAGTTTCATCCAAT
1 ATTTAGGGCAGTTTCATCCAAT
71021635 ATTTAGGGCAGTTTCATCCAAT
1 ATTTAGGGCAGTTTCATCCAAT
71021657 ATTTAGGGCAGTTTCA
1 ATTTAGGGCAGTTTCA
71021673 ATTCTCTCCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (22 bp):
ATTTAGGGCAGTTTCATCCAAT
Found at i:71021867 original size:21 final size:19
Alignment explanation
Indices: 71021843--71021891 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
71021833 GAATGAATTC
*
71021843 TTATAGATTTATGATTATCAT
1 TTATAGATTTA-GATTA-AAT
*
71021864 TTATATGTTTTAGATTAAAT
1 TTATA-GATTTAGATTAAAT
71021884 TTATAGAT
1 TTATAGAT
71021892 ATTTGTGCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 2 0.08
20 7 0.29
21 10 0.42
22 5 0.21
ACGTcount: A:0.35, C:0.02, G:0.10, T:0.53
Consensus pattern (19 bp):
TTATAGATTTAGATTAAAT
Found at i:71028617 original size:40 final size:39
Alignment explanation
Indices: 71028567--71028711 Score: 155
Period size: 40 Copynumber: 3.7 Consensus size: 39
71028557 ATGCTGGAAA
* * * * *
71028567 TTATAACCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCG
* *
71028607 CTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-AGTCG
* * *
71028647 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCAATCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCG
* * *
71028686 TTATATCCGGGTTAAGTCCCGTAGGC
1 TTATATCCGGGCTAAGACCCGAAGGC
71028712 CTTGGTGCGG
Statistics
Matches: 88, Mismatches: 17, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
39 25 0.28
40 63 0.72
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTCG
Found at i:71028733 original size:79 final size:80
Alignment explanation
Indices: 71028573--71028739 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 80
71028563 GAAATTATAA
* * *
71028573 CCGGGTTAAGACCCGAAGGCAATGGTGCTAGTGGCTATATCCGGGCTAAGACCCGAAGGCATTCG
1 CCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
*
71028638 TGCGAGTCATTCTAT
66 TGCGAGTCATCCTAT
* * * * * * * *
71028653 CCGGGCTAAGACCCGAAGGCATTTGTGC-AATCGTTATATCCGGGTTAAGTCCCGTAGGCCTTGG
1 CCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
* *
71028717 TGCGGGTTA-CCATAT
66 TGCGAGTCATCC-TAT
71028732 CCGGGCTA
1 CCGGGCTA
71028740 TGTCCCAAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
78 1 0.01
79 46 0.64
80 25 0.35
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.24
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATGGTGCTAATCGCTATATCCGGGCTAAGACCCGAAGGCATTCG
TGCGAGTCATCCTAT
Found at i:71035824 original size:16 final size:16
Alignment explanation
Indices: 71035800--71035831 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
71035790 AGGATGAAAT
*
71035800 AAAATTAAAATAAAAG
1 AAAAATAAAATAAAAG
71035816 AAAAATAAAATAAAAG
1 AAAAATAAAATAAAAG
71035832 GTAGTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (16 bp):
AAAAATAAAATAAAAG
Found at i:71046129 original size:46 final size:46
Alignment explanation
Indices: 71046076--71046251 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71046066 TATTTGGGCA
71046076 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
71046122 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
71046169 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
71046215 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71046252 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:71046231 original size:93 final size:93
Alignment explanation
Indices: 71046072--71046243 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71046062 GGGATATTTG
* *
71046072 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71046137 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
71046165 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71046230 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71046244 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71049238 original size:15 final size:15
Alignment explanation
Indices: 71049199--71049277 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
71049189 GTATCTTGGG
*
71049199 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
71049214 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
71049229 TTTCTTTATTC-GGG
1 TTTCTTTATTCTGGA
*
71049243 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
71049258 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
71049272 TTTCTT
1 TTTCTT
71049278 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
13 2 0.04
14 17 0.32
15 32 0.60
16 2 0.04
ACGTcount: A:0.10, C:0.18, G:0.14, T:0.58
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:71049262 original size:29 final size:29
Alignment explanation
Indices: 71049190--71049276 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
71049180 CATAGTATCG
* * * *
71049190 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTC-GGATTTCTC
*
71049220 TAT-TCTGGATTTCTTTATTCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCGGATTTCTC
*
71049249 TATCTTGGATTTCTTTATTCGGTTTTCT
1 TATCTTGGATTTCTTTATTCGGATTTCT
71049277 TGTTATCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 32 0.65
30 17 0.35
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.56
Consensus pattern (29 bp):
TATCTTGGATTTCTTTATTCGGATTTCTC
Found at i:71051700 original size:46 final size:46
Alignment explanation
Indices: 71051647--71051822 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
71051637 TATTTGGGCA
71051647 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
71051693 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
71051740 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
71051786 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71051823 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:71051802 original size:93 final size:93
Alignment explanation
Indices: 71051643--71051814 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71051633 GGGATATTTG
* *
71051643 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71051708 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
71051736 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
71051801 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
71051815 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:71057169 original size:13 final size:13
Alignment explanation
Indices: 71057151--71057179 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
71057141 AACTCCCATG
71057151 TCATCTACTCATT
1 TCATCTACTCATT
71057164 TCATCTACTCATT
1 TCATCTACTCATT
71057177 TCA
1 TCA
71057180 AATGGGTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (13 bp):
TCATCTACTCATT
Found at i:71060499 original size:196 final size:196
Alignment explanation
Indices: 71060165--71060563 Score: 746
Period size: 196 Copynumber: 2.0 Consensus size: 196
71060155 CCTAAAGAAT
*
71060165 ACTAAGGTTTAACAATTTCCTCTGAATTTAACAATTTTCTCTCGGAATTGTTATGGATGCGCGAA
1 ACTAAGGTTTAACAATTTCCTCTGAATTTAACAATTTTCTCTCGGAATTGTTACGGATGCGCGAA
*
71060230 TCTAAAATTTTCTCGTATCTTTCGTCAATATAATAGAGAGTACAAACCTGATATTGTTAGTTTTC
66 TCTAAAATTTTCTCGTATCTTTCGTCAATATAATAGAGAGTACAAAACTGATATTGTTAGTTTTC
71060295 TAAAAACAAGGGTAAGTGGTTTTAAAGTTGATAAGATTATTGCTAACTTAGGTTTTAAGTTTTCT
131 TAAAAACAAGGGTAAGTGGTTTTAAAGTTGATAAGATTATTGCTAACTTAGGTTTTAAGTTTTCT
71060360 C
196 C
*
71060361 ACTAAGGTTTAACAATTTCCTCTGAATTTAACAGTTTTCTCTCGGAATTGTTACGGATGCGCGAA
1 ACTAAGGTTTAACAATTTCCTCTGAATTTAACAATTTTCTCTCGGAATTGTTACGGATGCGCGAA
* *
71060426 TCTAAAATTTTCTCGTATCTTTCGTGAATATAATAGAGAGTACAAAATTGATATTGTTAGTTTTC
66 TCTAAAATTTTCTCGTATCTTTCGTCAATATAATAGAGAGTACAAAACTGATATTGTTAGTTTTC
71060491 TAAAAACAAGGGTAAGTGGTTTTAAAGTTGATAAGATTATTGCTAACTTAGGTTTTAAGTTTTCT
131 TAAAAACAAGGGTAAGTGGTTTTAAAGTTGATAAGATTATTGCTAACTTAGGTTTTAAGTTTTCT
71060556 C
196 C
71060557 AC-AAGGT
1 ACTAAGGT
71060564 CGAGGCTATT
Statistics
Matches: 198, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
195 5 0.03
196 193 0.97
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (196 bp):
ACTAAGGTTTAACAATTTCCTCTGAATTTAACAATTTTCTCTCGGAATTGTTACGGATGCGCGAA
TCTAAAATTTTCTCGTATCTTTCGTCAATATAATAGAGAGTACAAAACTGATATTGTTAGTTTTC
TAAAAACAAGGGTAAGTGGTTTTAAAGTTGATAAGATTATTGCTAACTTAGGTTTTAAGTTTTCT
C
Found at i:71070586 original size:143 final size:141
Alignment explanation
Indices: 71070377--71070672 Score: 565
Period size: 143 Copynumber: 2.1 Consensus size: 141
71070367 GTGAGTTAAA
71070377 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
*
71070442 TGAGTGAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTAAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTA--TGTG
71070507 TGTGTGCATGAGT
129 TGTGTGCATGAGT
71070520 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
1 ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
71070585 TGAGTAAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
66 TGAGTAAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
71070650 TGTGCATGAGT
131 TGTGCATGAGT
71070661 ATTCGGCCATGC
1 ATTCGGCCATGC
71070673 TATAGAATTT
Statistics
Matches: 152, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
141 29 0.19
143 123 0.81
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (141 bp):
ATTCGGCCATGCATGTTGTTTTCCTTGGTGAGTGTTTTGATGTTGTTGTGATGAAAGCATGGAGA
TGAGTAAGTTCGAATGTTTAACAAAAAGGAAATTTTGTGCCATTGAGTTCTTGTTGTTATGTGTG
TGTGCATGAGT
Found at i:71071350 original size:29 final size:29
Alignment explanation
Indices: 71071317--71071445 Score: 159
Period size: 29 Copynumber: 4.4 Consensus size: 29
71071307 ACGAGATCGG
*
71071317 CACTAAGTGTGCGTGCTGGAAATATATGA
1 CACTAAGTGTGCGTGCTGGAAAAATATGA
* * *
71071346 CACTAAGTGTGCGTGCTGGAAATATAAGG
1 CACTAAGTGTGCGTGCTGGAAAAATATGA
*
71071375 CACTAAGTGTGCATGCTGGAAAAATATGA
1 CACTAAGTGTGCGTGCTGGAAAAATATGA
* ** *
71071404 CACTATGTGTGCAAGCTGGAAAAATACGA
1 CACTAAGTGTGCGTGCTGGAAAAATATGA
**
71071433 CACTGGGTGTGCG
1 CACTAAGTGTGCG
71071446 AGCTCGGAGG
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 88 1.00
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.24
Consensus pattern (29 bp):
CACTAAGTGTGCGTGCTGGAAAAATATGA
Found at i:71071385 original size:58 final size:58
Alignment explanation
Indices: 71071315--71071425 Score: 177
Period size: 58 Copynumber: 1.9 Consensus size: 58
71071305 TGACGAGATC
* * **
71071315 GGCACTAAGTGTGCGTGCTGGAAATATATGACACTAAGTGTGCGTGCTGGAAATATAA
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAATATAA
*
71071373 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAA
1 GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAA
71071426 AATACGACAC
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.24
Consensus pattern (58 bp):
GGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAATATAA
Found at i:71075555 original size:93 final size:93
Alignment explanation
Indices: 71075443--71075614 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
71075433 CGCCCATAAG
* *
71075443 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71075508 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
71075536 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
71075601 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
71075615 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:71075611 original size:46 final size:46
Alignment explanation
Indices: 71075436--71075611 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71075426 TGTAACCCGC
* * *
71075436 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
71075482 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
71075532 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
71075575 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
71075612 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:71082959 original size:29 final size:29
Alignment explanation
Indices: 71082927--71082999 Score: 101
Period size: 29 Copynumber: 2.5 Consensus size: 29
71082917 CTTCGAGCTC
*
71082927 GCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71082956 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
71082985 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
71083000 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:71084768 original size:80 final size:80
Alignment explanation
Indices: 71084684--71084832 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
71084674 TATGGTAACC
* * * *
71084684 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
71084748 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
71084764 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
71084829 CCGG
66 CCGG
71084833 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:71084774 original size:40 final size:38
Alignment explanation
Indices: 71084725--71084832 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
71084715 ATCACGATTT
*
71084725 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
71084765 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
71084805 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
71084833 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:71092919 original size:40 final size:39
Alignment explanation
Indices: 71092864--71092958 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 39
71092854 TTCCTTAGCC
*
71092864 CGGGTCTTAGCCCGGATAGAATG-ACTCGCACGAA-TGCCTT
1 CGGGTCTTAGCCCGGAT-GAA-GCACTAGCAC-AATTGCCTT
*
71092904 CGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTT
1 CGGGTCTTAGCCCGGATGAAG-CACTAGCACAATTGCCTT
*
71092944 CGGGTCTTAACCCGG
1 CGGGTCTTAGCCCGG
71092959 TTATAATTTC
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
38 1 0.02
39 4 0.08
40 44 0.90
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.23
Consensus pattern (39 bp):
CGGGTCTTAGCCCGGATGAAGCACTAGCACAATTGCCTT
Found at i:71097301 original size:2 final size:2
Alignment explanation
Indices: 71097294--71097336 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
71097284 CGCCATGAGA
71097294 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71097336 A
1 A
71097337 GGTTGGAGGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:71102765 original size:40 final size:39
Alignment explanation
Indices: 71102720--71102849 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
71102710 CGGAATACAA
71102720 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
71102760 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
71102800 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
71102840 CCGGATATAA
1 CCGGATATAA
71102850 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:71110703 original size:40 final size:39
Alignment explanation
Indices: 71110658--71110786 Score: 154
Period size: 40 Copynumber: 3.3 Consensus size: 39
71110648 CGGAATACAA
71110658 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
71110698 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
71110738 CCGGATGTAGCCGCTAGCAC-AATTGCCTTC-GGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
71110777 CCGGATATAA
1 CCGGATATAA
71110787 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 19 0.25
40 57 0.75
ACGTcount: A:0.23, C:0.29, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:71114762 original size:12 final size:12
Alignment explanation
Indices: 71114745--71114769 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71114735 ATAGCCTATA
71114745 AGCAACCGGGCC
1 AGCAACCGGGCC
71114757 AGCAACCGGGCC
1 AGCAACCGGGCC
71114769 A
1 A
71114770 ATACGTTCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.40, G:0.32, T:0.00
Consensus pattern (12 bp):
AGCAACCGGGCC
Found at i:71119797 original size:13 final size:13
Alignment explanation
Indices: 71119779--71119809 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
71119769 ATAAGGCCGA
71119779 ATGTCATGTACAC
1 ATGTCATGTACAC
71119792 ATGTCATGTACAC
1 ATGTCATGTACAC
71119805 ATGTC
1 ATGTC
71119810 TAATATATAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTCATGTACAC
Found at i:71124740 original size:19 final size:19
Alignment explanation
Indices: 71124707--71124746 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
71124697 TATTTTTTTT
* *
71124707 ATTAGAATCGAAAAGTTTA
1 ATTAGAATAGAAAAGTATA
*
71124726 ATTAGAATAGGAAAGTATA
1 ATTAGAATAGAAAAGTATA
71124745 AT
1 AT
71124747 AAAAGTTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.17, T:0.30
Consensus pattern (19 bp):
ATTAGAATAGAAAAGTATA
Found at i:71125205 original size:16 final size:17
Alignment explanation
Indices: 71125184--71125217 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
71125174 AATTAGAGAA
71125184 TTCTATTTAA-TTCTAT
1 TTCTATTTAATTTCTAT
71125200 TTCTATTTAATTTCTAT
1 TTCTATTTAATTTCTAT
71125217 T
1 T
71125218 AAATCCATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.59
17 7 0.41
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (17 bp):
TTCTATTTAATTTCTAT
Done.