Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 230 of 325
Found at i:71936463 original size:96 final size:96
Alignment explanation
Indices: 71936251--71936524 Score: 449
Period size: 96 Copynumber: 2.8 Consensus size: 96
71936241 GATTCTACGC
* *
71936251 GATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA--G
*
71936316 TGTATATATGTGATAAGGCCTAATGGCCGATGT
64 TGTATATATGTGATAAGGCCTAATGGCCAATGT
71936349 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
71936414 TATATATGTGATAAGGCCTAATGGCCAATGT
66 TATATATGTGATAAGGCCTAATGGCCAATGT
* * * * *
71936445 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCGAGTGGCCTACGTGATGGATGTGAAAGTG
1 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
71936510 TATAAATGTGATAAG
66 TATATATGTGATAAG
71936525 TCCCGAAGGG
Statistics
Matches: 167, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
96 107 0.64
98 60 0.36
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATGGCCAATGT
Found at i:71938705 original size:40 final size:40
Alignment explanation
Indices: 71938650--71938841 Score: 330
Period size: 40 Copynumber: 4.8 Consensus size: 40
71938640 GAGAATTGAG
* *
71938650 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
71938690 AGTGATGTATCCGGACTATGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
71938730 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
71938770 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
71938810 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCA
71938842 ATCATGCTGG
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:71943080 original size:40 final size:40
Alignment explanation
Indices: 71942979--71943086 Score: 146
Period size: 40 Copynumber: 2.7 Consensus size: 40
71942969 CCAGCATGAT
** * *
71942979 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
71943019 TACTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
71943059 TGCTCTTCGGGACTTAACCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
71943087 GTCGAGACCT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 4 0.07
40 55 0.93
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:71951029 original size:21 final size:21
Alignment explanation
Indices: 71951003--71951044 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
71950993 CTAATGGCCG
*
71951003 ATGTGATGAATGTGAAAGTGT
1 ATGTGAAGAATGTGAAAGTGT
71951024 ATGTGAAGAATGTGAAAGTGT
1 ATGTGAAGAATGTGAAAGTGT
71951045 GTATATATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.33, T:0.31
Consensus pattern (21 bp):
ATGTGAAGAATGTGAAAGTGT
Found at i:71951084 original size:49 final size:49
Alignment explanation
Indices: 71951024--71951350 Score: 536
Period size: 49 Copynumber: 6.8 Consensus size: 49
71951014 GTGAAAGTGT
*
71951024 ATGTGAAGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
71951073 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
* *
71951122 ACGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
71951171 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
71951220 ATGTGAAGAATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
71951269 ATGTGATGAATGTG-AAG-GTGTATATATGTGATAGGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
*
71951316 ATGTGATGAATGTGAAA--GTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAG
71951351 TCCCGAAGGG
Statistics
Matches: 261, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
47 55 0.21
48 5 0.02
49 201 0.77
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:71955071 original size:47 final size:47
Alignment explanation
Indices: 71954932--71955156 Score: 315
Period size: 49 Copynumber: 4.7 Consensus size: 47
71954922 GATTCTACGC
71954932 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGT
*
71954981 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCTAATGGCCGATGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
*
71955030 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGT
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
* * * * *
71955077 GATGAATGTGAAAGCGTATACATATGTGATAAGGCCGAGTGGCCTACGT
1 GATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCGATGT
* *
71955126 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
71955157 TCCCGAAGGG
Statistics
Matches: 161, Mismatches: 11, Indels: 10
0.88 0.06 0.05
Matches are distributed among these distances:
47 61 0.38
49 100 0.62
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
Found at i:71955071 original size:96 final size:96
Alignment explanation
Indices: 71954932--71955156 Score: 369
Period size: 96 Copynumber: 2.3 Consensus size: 96
71954922 GATTCTACGC
*
71954932 GATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGCG
1 GATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCG
* *
71954997 TATACATATGTGATAAGGCCTAATGGCCGATGT
64 TATACATATGTGATAAGGCCGAATGGCCGACGT
71955030 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCGTA
1 GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCGTA
* *
71955095 TACATATGTGATAAGGCCGAGTGGCCTACGT
66 TACATATGTGATAAGGCCGAATGGCCGACGT
* *
71955126 GATGGATGTGAAAGTGTATAAATGTGATAAG
1 GATGAATGTGAAAGTGTATATATGTGATAAG
71955157 TCCCGAAGGG
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
96 107 0.89
98 13 0.11
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (96 bp):
GATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGCGTA
TACATATGTGATAAGGCCGAATGGCCGACGT
Found at i:71966516 original size:43 final size:43
Alignment explanation
Indices: 71966455--71966662 Score: 269
Period size: 43 Copynumber: 4.9 Consensus size: 43
71966445 ATGGTACCAT
*
71966455 TCGGG-CTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATA
1 TCGGGCCTT-GAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
** *
71966498 TCGGGCCTTGAGCCTAGCAGGCTATAATATCGGTAAAATAATA
1 TCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
* * *
71966541 TAGGGCCTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATA
1 TCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
** *
71966584 TCAAGCCTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
1 TCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
* *
71966627 TTGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TCGGGCCTT-GAGCCTAGCAGGCTATAATGCCGGTGAA
71966663 TGAATTCAGA
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
42 14 0.10
43 127 0.88
44 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.22
Consensus pattern (43 bp):
TCGGGCCTTGAGCCTAGCAGGCTATAATGCCGGTGAAATAATA
Found at i:71966584 original size:86 final size:86
Alignment explanation
Indices: 71966457--71966662 Score: 315
Period size: 86 Copynumber: 2.4 Consensus size: 86
71966447 GGTACCATTC
** *
71966457 GGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCGGGCCTTGAGCCTAGCAGGCTA
1 GGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCAAGCCTCGAGCCTAGCAGGCTA
*
71966522 TAATATCGGTAAAATAATATA
66 TAATACCGGTAAAATAATATA
*
71966543 GGGCCTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCAAGCCTCGAGCCTAGCAGGCTA
1 GGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCAAGCCTCGAGCCTAGCAGGCTA
* * *
71966608 TAATGCCGGTGAAATAATATT
66 TAATACCGGTAAAATAATATA
* *
71966629 GGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGAA
1 GGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAA
71966663 TGAATTCAGA
Statistics
Matches: 109, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
85 11 0.10
86 98 0.90
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.22
Consensus pattern (86 bp):
GGGCTTCGAGCCTAGCAGGCTATAATGCCAGTGAAATAATATCAAGCCTCGAGCCTAGCAGGCTA
TAATACCGGTAAAATAATATA
Found at i:71966738 original size:40 final size:40
Alignment explanation
Indices: 71966639--71966743 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
71966629 GGGCTTCGAG
* *
71966639 CCTAGCAGGCGAAATGCCGGTGAATGAATTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTG-ATGAATTCAGACTTAAAA
* *** * **
71966680 TCTAGCAGGCTTCGTGCCGGTGATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
*
71966720 CCTAGCAGGCTAATTGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
71966744 TTGATAACAG
Statistics
Matches: 51, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
40 34 0.67
41 17 0.33
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:71967255 original size:16 final size:18
Alignment explanation
Indices: 71967224--71967256 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
71967214 AACTCGTCAC
71967224 ACTATCTATCGTTTTGGT
1 ACTATCTATCGTTTTGGT
71967242 ACTAT-TAT-GTTTTGG
1 ACTATCTATCGTTTTGG
71967257 AATTCGTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (18 bp):
ACTATCTATCGTTTTGGT
Found at i:71969250 original size:28 final size:28
Alignment explanation
Indices: 71969218--71969316 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
71969208 GCAATAAGCC
*
71969218 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
71969246 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
71969274 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
71969303 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71969317 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:71976921 original size:28 final size:28
Alignment explanation
Indices: 71976889--71976987 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
71976879 GCAATAAGCC
*
71976889 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
71976917 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
71976945 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
71976974 CGCACACTTAGTGC
1 CGCACACTTAGTGC
71976988 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:71989339 original size:34 final size:33
Alignment explanation
Indices: 71989276--71989348 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 33
71989266 TCAGTGGCAA
* *
71989276 TATCAGTGTGGGCCTTAGCCCATTACAGTAACAT
1 TATCAGTGTGGGCCTTAGCCAATTACAGT-ACAG
71989310 TATCAGTGTGGGCCTTAGCCTAATT-CAGTACAG
1 TATCAGTGTGGGCCTTAGCC-AATTACAGTACAG
71989343 TATCAG
1 TATCAG
71989349 AGATGCATAC
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 9 0.25
34 24 0.67
35 3 0.08
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (33 bp):
TATCAGTGTGGGCCTTAGCCAATTACAGTACAG
Found at i:71992052 original size:24 final size:24
Alignment explanation
Indices: 71992020--71992226 Score: 301
Period size: 24 Copynumber: 8.6 Consensus size: 24
71992010 TATCTCAAAT
71992020 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
71992044 GCACTATGTGTGCGACTT-ACTATG
1 GCACTATGTGTGCGA-TTCACTATG
71992068 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
71992092 GCACTATGTGTGCGACTT-ACTATG
1 GCACTATGTGTGCGA-TTCACTATG
71992116 GCACTATGTGTGCGATTCACTATG
1 GCACTATGTGTGCGATTCACTATG
*
71992140 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATG
* * *
71992164 GCACTAAGTGTGCGATTTACTATA
1 GCACTATGTGTGCGATTCACTATG
* ** *
71992188 GCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTCACTATG
*
71992212 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
71992227 ACATAATAAG
Statistics
Matches: 172, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.02
24 164 0.95
25 4 0.02
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (24 bp):
GCACTATGTGTGCGATTCACTATG
Found at i:71992072 original size:48 final size:48
Alignment explanation
Indices: 71992020--71992226 Score: 333
Period size: 48 Copynumber: 4.3 Consensus size: 48
71992010 TATCTCAAAT
71992020 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACTTACTATG
71992068 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACTTACTATG
*
71992116 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACTTACTATG
* * * * * * *
71992164 GCACTAAGTGTGCGATTTACTATAGCACTACGTGTGCGATTTGCTATA
1 GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACTTACTATG
*
71992212 GCTCTATGTGTGCGA
1 GCACTATGTGTGCGA
71992227 ACATAATAAG
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 150 1.00
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (48 bp):
GCACTATGTGTGCGATTCACTATGGCACTATGTGTGCGACTTACTATG
Found at i:71996118 original size:27 final size:28
Alignment explanation
Indices: 71996081--71996134 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
71996071 CTTTAGGTCC
*
71996081 AATCACGTTCACATGG-CCATCAGGCCA
1 AATCACATTCACATGGCCCATCAGGCCA
*
71996108 AATCACATTCATATGGCCCATCAGGCC
1 AATCACATTCACATGGCCCATCAGGCC
71996135 CAACTAGTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 14 0.58
28 10 0.42
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (28 bp):
AATCACATTCACATGGCCCATCAGGCCA
Found at i:71999907 original size:14 final size:13
Alignment explanation
Indices: 71999890--71999937 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 13
71999880 AAAGTAGTTT
71999890 TAAAAAGATAAAAA
1 TAAAAA-ATAAAAA
71999904 TAAAAACATAAAAA
1 TAAAAA-ATAAAAA
*
71999918 CATAAAAATAATAAA
1 TA-AAAAATAA-AAA
71999933 TAAAA
1 TAAAA
71999938 GTCTTTAAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 21 0.72
15 8 0.28
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (13 bp):
TAAAAAATAAAAA
Found at i:71999915 original size:22 final size:21
Alignment explanation
Indices: 71999890--71999937 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
71999880 AAAGTAGTTT
*
71999890 TAAAAAGATAAAAATAAAAACA
1 TAAAAACATAAAAATAAAAA-A
*
71999912 TAAAAACATAAAAATAATAAA
1 TAAAAACATAAAAATAAAAAA
71999933 TAAAA
1 TAAAA
71999938 GTCTTTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 6 0.25
22 18 0.75
ACGTcount: A:0.77, C:0.04, G:0.02, T:0.17
Consensus pattern (21 bp):
TAAAAACATAAAAATAAAAAA
Found at i:72002024 original size:41 final size:40
Alignment explanation
Indices: 72001897--72002041 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
72001887 CTCGCACAAG
* * * * * *
72001897 GCCTTTGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGATCTTAGTCCGGATATAGTCGCTAGCACAAAT
*
72001937 GCCTTCGGGA-CTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTC-GGATCTTAGTCCGGATATAGTCGCTAGCACAAAT
* *
72001977 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGATCTTAGTCCGGATATAGTCGC-TAGCACAAAT
72002018 GCCTTCGGATCTTAGTCCGGATAT
1 GCCTTCGGATCTTAGTCCGGATAT
72002042 CATTCGAGTA
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
39 3 0.03
40 56 0.60
41 34 0.37
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.28
Consensus pattern (40 bp):
GCCTTCGGATCTTAGTCCGGATATAGTCGCTAGCACAAAT
Found at i:72002757 original size:2 final size:2
Alignment explanation
Indices: 72002750--72002779 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72002740 ATGTGCAAAC
72002750 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72002780 GTGCAAGAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72005134 original size:71 final size:69
Alignment explanation
Indices: 72005046--72005207 Score: 306
Period size: 71 Copynumber: 2.3 Consensus size: 69
72005036 GAGATGTATC
72005046 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTG-
72005111 AGGACA
64 AGGACA
72005117 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
72005182 GACA
66 GACA
72005186 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72005208 AGACAAATCG
Statistics
Matches: 91, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
69 28 0.31
70 23 0.25
71 40 0.44
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (69 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTGGTCGCATGCGTGATTCCAAGTGAG
GACA
Found at i:72011062 original size:41 final size:41
Alignment explanation
Indices: 72011017--72011134 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
72011007 TGAAAGATAA
72011017 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
72011058 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72011088 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
72011129 ATGTAG
1 ATGTAG
72011135 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:72011073 original size:71 final size:71
Alignment explanation
Indices: 72010985--72011148 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
72010975 GAGATGTATC
72010985 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72011050 AGGACA
66 AGGACA
72011056 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72011121 AGGACA
66 AGGACA
72011127 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72011149 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72017073 original size:70 final size:71
Alignment explanation
Indices: 72016922--72017084 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
72016912 GAGATGTATC
72016922 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
72016987 AGGACA
66 AGGACA
72016993 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
72017057 CGGACA
66 AGGACA
72017063 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
72017085 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:72019765 original size:13 final size:13
Alignment explanation
Indices: 72019744--72019773 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
72019734 CGTGTTAGTG
72019744 CACACGGCCGTGT
1 CACACGGCCGTGT
*
72019757 CACAGGGCCGTGT
1 CACACGGCCGTGT
72019770 CACA
1 CACA
72019774 TGGCAATGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.37, G:0.30, T:0.13
Consensus pattern (13 bp):
CACACGGCCGTGT
Found at i:72022545 original size:37 final size:36
Alignment explanation
Indices: 72022491--72022567 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 36
72022481 ATTTGGATCC
* * *
72022491 TCATCCTGCAAATCATCAAACTTAACAAACTGTTGTA
1 TCATCCTGAAAACCATCAAACTGAACAAA-TGTTGTA
72022528 TCATCCTGAAAACCATCAAACTGAACAAATGTTGTA
1 TCATCCTGAAAACCATCAAACTGAACAAATGTTGTA
72022564 TCAT
1 TCAT
72022568 TTGAATTATT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 11 0.30
37 26 0.70
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (36 bp):
TCATCCTGAAAACCATCAAACTGAACAAATGTTGTA
Found at i:72025267 original size:56 final size:56
Alignment explanation
Indices: 72025207--72025413 Score: 310
Period size: 56 Copynumber: 3.7 Consensus size: 56
72025197 TTGATGATGT
72025207 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGCGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGCGA
* *
72025263 GTAAGACCACGTTCAATACGTTGGCATCGATATGTGATTCTAATATATGTGTGCGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGCGA
* * *
72025319 GTAAGACCACGTTTAATACGTTGGCATCGATATGTCACTCCGATATATGTGTGCGA
1 GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGCGA
***
72025375 GTAAGACC-CGGTTTGGGACAG-TGGCATCGATATGTGATT
1 GTAAGACCAC-GTTTAATAC-GTTGGCATCGATATGTGATT
72025414 ACATGTAAGG
Statistics
Matches: 137, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
55 1 0.01
56 135 0.99
57 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (56 bp):
GTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCTGATATATGTGTGCGA
Found at i:72027731 original size:29 final size:30
Alignment explanation
Indices: 72027698--72027754 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
72027688 CCAAGCCTAG
72027698 GGGC-AAAAATGTAATTATGCAAAAGTTTA
1 GGGCAAAAAATGTAATTATGCAAAAGTTTA
* *
72027727 GGGCAAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAAATGTAATTATGCAAAAGTT
72027755 GTATTAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.42, C:0.09, G:0.21, T:0.28
Consensus pattern (30 bp):
GGGCAAAAAATGTAATTATGCAAAAGTTTA
Found at i:72035255 original size:30 final size:30
Alignment explanation
Indices: 72035219--72035278 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
72035209 TTCCCGAGCC
*
72035219 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
72035249 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
72035279 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:72040240 original size:40 final size:40
Alignment explanation
Indices: 72040113--72040242 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
72040103 ATGCTGGAAA
* *
72040113 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * **
72040153 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
72040193 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
72040233 TTATATCCGG
1 TTATATCCGG
72040243 TTGTATTCCG
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.05
40 72 0.95
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:72048237 original size:40 final size:40
Alignment explanation
Indices: 72048182--72048391 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72048172 AACATTGGAA
72048182 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72048222 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72048262 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
72048302 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
72048341 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
72048382 CTATATCCGG
1 ATATATCCGG
72048392 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:72058624 original size:40 final size:39
Alignment explanation
Indices: 72058459--72058642 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
72058449 AAATTGAATG
* * *
72058459 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
72058499 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
72058539 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
72058579 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
72058618 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
72058643 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:72058667 original size:80 final size:81
Alignment explanation
Indices: 72058499--72058687 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
72058489 GCTGGAAATT
* * * *
72058499 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
72058564 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
72058580 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
72058643 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
72058659 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
72058688 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:72063417 original size:7 final size:7
Alignment explanation
Indices: 72063407--72063461 Score: 56
Period size: 7 Copynumber: 7.6 Consensus size: 7
72063397 AAGAATACAA
72063407 AGGGTTT
1 AGGGTTT
72063414 AGGGTTT
1 AGGGTTT
*
72063421 AAAGGTTTT
1 --AGGGTTT
* *
72063430 AAGATTT
1 AGGGTTT
*
72063437 AGGGTCT
1 AGGGTTT
72063444 AGGGTTT
1 AGGGTTT
72063451 AGGGTTT
1 AGGGTTT
72063458 AGGG
1 AGGG
72063462 AAATTGAGGA
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
7 33 0.85
9 6 0.15
ACGTcount: A:0.22, C:0.02, G:0.38, T:0.38
Consensus pattern (7 bp):
AGGGTTT
Found at i:72072205 original size:43 final size:43
Alignment explanation
Indices: 72072049--72072206 Score: 175
Period size: 43 Copynumber: 3.7 Consensus size: 43
72072039 ATGTGTTATT
* *
72072049 GTGTAGGACCACGTCTGGGATGTTGGCATCGACT-TATT-ATTTAC
1 GTGTAAGACCACGTCTGGGACGTTGGCATCGA-TAT-TTGA-TTAC
*
72072093 GTGTAAGACCACGT-TCGGGACGTTGGCATC-ATATTTGATTTC
1 GTGTAAGACCACGTCT-GGGACGTTGGCATCGATATTTGATTAC
*
72072135 GTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATTTGATTAC
1 GTGTAAGACCAC-GTCTGGGA-CGTTGGCATCGATATTTGATTAC
*
72072178 ATGTAAGACCACGTCTGGGACGTTGGCAT
1 GTGTAAGACCACGTCTGGGACGTTGGCAT
72072207 TGTACGAGCT
Statistics
Matches: 98, Mismatches: 7, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
41 1 0.01
42 30 0.31
43 40 0.41
44 27 0.28
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (43 bp):
GTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTAC
Found at i:72083103 original size:40 final size:39
Alignment explanation
Indices: 72083058--72083187 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
72083048 CGGAATATAA
72083058 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
72083098 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72083138 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72083178 CCGGATATAA
1 CCGGATATAA
72083188 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72083202 original size:40 final size:40
Alignment explanation
Indices: 72083074--72083225 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
72083064 ATAACCATGT
* * *
72083074 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
72083114 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72083154 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72083194 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
72083226 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:72083208 original size:80 final size:80
Alignment explanation
Indices: 72083074--72083223 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
72083064 ATAACCATGT
*
72083074 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
72083138 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
72083154 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
72083217 CCCGGAT
64 CCCGGAT
72083224 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:72091113 original size:40 final size:39
Alignment explanation
Indices: 72091068--72091197 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
72091058 CGGAATATAA
72091068 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
72091108 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72091148 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
72091188 CCGGATATAA
1 CCGGATATAA
72091198 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:72091212 original size:40 final size:40
Alignment explanation
Indices: 72091084--72091233 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
72091074 ATAACCATGT
* * *
72091084 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
72091124 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72091164 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
72091204 GCATAATTGTCTTCGGG--TTAGCCCGGATAT
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAT
72091234 CATTCAATTT
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
38 12 0.13
39 2 0.02
40 74 0.82
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:72091218 original size:80 final size:78
Alignment explanation
Indices: 72091084--72091231 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 78
72091074 ATAACCATGT
*
72091084 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG--TTAGCC
72091149 CGGATGTAGCCACTA
64 CGGATGTAGCCACTA
* * * * *
72091164 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGTTAGCC
72091227 CGGAT
64 CGGAT
72091232 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
78 11 0.18
79 3 0.05
80 46 0.77
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTTAGCCCG
GATGTAGCCACTA
Found at i:72094255 original size:25 final size:25
Alignment explanation
Indices: 72094226--72094273 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72094216 TTATAATATG
* * *
72094226 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72094251 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72094274 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72094342 original size:20 final size:20
Alignment explanation
Indices: 72094317--72094375 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
72094307 TAAATATGGT
72094317 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
72094337 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
72094357 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72094376 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72094493 original size:25 final size:24
Alignment explanation
Indices: 72094426--72094497 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
72094416 GAGGAAGTGA
*
72094426 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
* *
72094450 GAAAGGGCTTTGGCCCCAGTTATT
1 AAAAGGGCTTAGGCCCCAGTTATT
72094474 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTAGGCC-CCAGTTAT
72094498 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 30 0.73
25 11 0.27
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTAGGCCCCAGTTATT
Found at i:72094740 original size:38 final size:38
Alignment explanation
Indices: 72094689--72094851 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
72094679 CGTTTACAGT
72094689 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
72094727 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
72094758 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
72094796 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
72094834 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
72094852 GCATGATTGA
Statistics
Matches: 112, Mismatches: 5, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
38 68 0.61
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:72094751 original size:31 final size:31
Alignment explanation
Indices: 72094713--72094828 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
72094703 AGTATTATGA
72094713 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
72094744 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
72094780 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
72094813 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
72094829 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:72094765 original size:69 final size:69
Alignment explanation
Indices: 72094689--72094828 Score: 271
Period size: 69 Copynumber: 2.0 Consensus size: 69
72094679 CGTTTACAGT
72094689 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
72094754 ATGA
66 ATGA
*
72094758 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
72094823 ATGA
66 ATGA
72094827 AA
1 AA
72094829 TACGAAAAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:72102566 original size:25 final size:25
Alignment explanation
Indices: 72102537--72102584 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72102527 TTATAATATG
* * *
72102537 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72102562 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72102585 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72102653 original size:20 final size:20
Alignment explanation
Indices: 72102628--72102686 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
72102618 TAAATATGGT
72102628 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
72102648 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
72102668 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72102687 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72102767 original size:23 final size:24
Alignment explanation
Indices: 72102737--72102831 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
72102727 GAGGAAGTGA
72102737 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
72102760 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
72102784 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
72102808 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72102832 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:72102805 original size:47 final size:49
Alignment explanation
Indices: 72102738--72102831 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
72102728 AGGAAGTGAA
*
72102738 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
72102785 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
72102832 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:72103074 original size:38 final size:36
Alignment explanation
Indices: 72103023--72103182 Score: 224
Period size: 38 Copynumber: 4.5 Consensus size: 36
72103013 CGTTTACAGT
72103023 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATG-AA-ATGA
72103061 AAAGGCTTCGGCCCAGTA-TATG-AA-AT---ATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATGA
72103091 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATG-AA-ATGA
72103129 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATGA
*
72103165 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
72103183 GCATGATTGA
Statistics
Matches: 112, Mismatches: 1, Indels: 19
0.85 0.01 0.14
Matches are distributed among these distances:
30 22 0.20
31 4 0.04
32 2 0.02
33 2 0.02
35 2 0.02
36 9 0.08
37 19 0.17
38 52 0.46
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (36 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAATGA
Found at i:72103084 original size:30 final size:30
Alignment explanation
Indices: 72103048--72103161 Score: 129
Period size: 30 Copynumber: 3.5 Consensus size: 30
72103038 GTATTATGAA
72103048 ATATGAAACATGAAAAGGCTTCGGCCCAGT
1 ATATGAAACATGAAAAGGCTTCGGCCCAGT
*
72103078 ATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 ATATGAAACATGAAAAGGCTTCGGCCCAG-----T
72103113 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 ---ATATGAAACATGAAAAGGCTTCGGCCCAGT
*
72103146 ATTATGAAATATGAAA
1 A-TATGAAACATGAAA
72103162 TGAAAAGGGC
Statistics
Matches: 72, Mismatches: 3, Indels: 17
0.78 0.03 0.18
Matches are distributed among these distances:
30 29 0.40
31 13 0.18
33 1 0.01
35 1 0.01
38 28 0.39
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.24
Consensus pattern (30 bp):
ATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:72103097 original size:68 final size:69
Alignment explanation
Indices: 72103023--72103161 Score: 271
Period size: 68 Copynumber: 2.0 Consensus size: 69
72103013 CGTTTACAGT
72103023 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTA-TATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
72103087 ATGA
66 ATGA
72103091 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
72103156 ATGA
66 ATGA
72103160 AA
1 AA
72103162 TGAAAAGGGC
Statistics
Matches: 70, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
68 56 0.80
69 14 0.20
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
ATGA
Found at i:72110911 original size:25 final size:25
Alignment explanation
Indices: 72110882--72110929 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72110872 TTATAATATG
* * *
72110882 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72110907 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72110930 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72110998 original size:20 final size:20
Alignment explanation
Indices: 72110973--72111031 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
72110963 TAAATATGGT
72110973 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
72110993 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
72111013 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
72111032 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:72111112 original size:23 final size:24
Alignment explanation
Indices: 72111082--72111176 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
72111072 GAGGAAGTGA
72111082 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
72111105 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
72111129 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
72111153 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
72111177 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:72111150 original size:47 final size:49
Alignment explanation
Indices: 72111083--72111176 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
72111073 AGGAAGTGAA
*
72111083 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
72111130 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
72111177 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:72111428 original size:38 final size:38
Alignment explanation
Indices: 72111368--72111529 Score: 223
Period size: 38 Copynumber: 4.4 Consensus size: 38
72111358 CGTTTACAGT
72111368 AAAGGCTTC-GCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
72111405 AAAGGCTTCGGCCCAG-----T--AATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
72111436 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
72111474 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATACGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
72111512 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
72111530 GCATGATTGA
Statistics
Matches: 111, Mismatches: 5, Indels: 16
0.84 0.04 0.12
Matches are distributed among these distances:
31 29 0.26
33 1 0.01
36 1 0.01
37 9 0.08
38 58 0.52
39 13 0.12
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.22
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:72111429 original size:31 final size:31
Alignment explanation
Indices: 72111391--72111506 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
72111381 AGTATTATGA
72111391 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCCAGT
*
72111422 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTAT
1 AATATGAAACATGAAAAGGCTTCGGCCCAG-----T
72111458 GAAATATGAAACATGAAAAGGCTTCGGCCCAGT
1 --AATATGAAACATGAAAAGGCTTCGGCCCAGT
* *
72111491 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
72111507 TACGAAAAGG
Statistics
Matches: 74, Mismatches: 4, Indels: 14
0.80 0.04 0.15
Matches are distributed among these distances:
31 43 0.58
33 1 0.01
36 1 0.01
38 29 0.39
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCCAGT
Found at i:72111460 original size:69 final size:68
Alignment explanation
Indices: 72111368--72111506 Score: 260
Period size: 69 Copynumber: 2.0 Consensus size: 68
72111358 CGTTTACAGT
72111368 AAAGGCTTCGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAATA
1 AAAGGCTTCGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAATA
72111433 TGA
66 TGA
*
72111436 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTC-GCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
72111501 ATGA
65 ATGA
72111505 AA
1 AA
72111507 TACGAAAAGG
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
68 9 0.13
69 60 0.87
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.24
Consensus pattern (68 bp):
AAAGGCTTCGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAATA
TGA
Found at i:72112890 original size:12 final size:12
Alignment explanation
Indices: 72112873--72112904 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
72112863 ATGTTTTTGC
72112873 ACACGGGCTAGG
1 ACACGGGCTAGG
*
72112885 ACACGGGATAGG
1 ACACGGGCTAGG
72112897 ACACGGGC
1 ACACGGGC
72112905 ATGTCGTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.28, C:0.25, G:0.41, T:0.06
Consensus pattern (12 bp):
ACACGGGCTAGG
Found at i:72114493 original size:41 final size:40
Alignment explanation
Indices: 72114317--72114494 Score: 162
Period size: 40 Copynumber: 4.4 Consensus size: 40
72114307 CTCGATTGTC
* * * * *
72114317 TCGGGACATAGCCC-GGTTATACTAATTCGCACAATTGCCT
1 TCGGGACTTAGCCCAGATT-TAGTAACTCGCACAAATGCCT
* * * *
72114357 TCGGGAATTAGCCCGGATTTAATAACTCGCACGAATGCCT
1 TCGGGACTTAGCCCAGATTTAGTAACTCGCACAAATGCCT
* * * *
72114397 TCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGCCT
1 TCGGGACTTAGCCCAGATTTAGTAACTCGCACAAATGCCT
* * * *
72114437 TCGGGAGTT-GACCCAGATTTAGTCACTTAGCACAAAAGCCT
1 TCGGGACTTAG-CCCAGATTTAGTAAC-TCGCACAAATGCCT
72114478 TCGGGACTTAGCCCAGA
1 TCGGGACTTAGCCCAGA
72114495 CACCATTCGA
Statistics
Matches: 112, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
40 82 0.73
41 29 0.26
42 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TCGGGACTTAGCCCAGATTTAGTAACTCGCACAAATGCCT
Found at i:72122432 original size:40 final size:39
Alignment explanation
Indices: 72122374--72122566 Score: 138
Period size: 40 Copynumber: 4.8 Consensus size: 39
72122364 GGATATAGCG
* * *
72122374 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAATTGCCTTCGGGACATAGCCCGGTT-TAGTA
* *
72122414 ATTCGCACAATTGCCTTCGGGA-ATTAGCCCGGATTTAATA
1 ACTCGCACAATTGCCTTCGGGACA-TAGCCCGG-TTTAGTA
* * * * * *
72122454 ACTCGCACGAGTGCCTTCGGGACTTAACCCAGTTTTGGTA
1 ACTCGCACAATTGCCTTCGGGACATAGCCC-GGTTTAGTA
* * * *
72122494 ACTCGCACAAATGCCTTCGGGA-GTTGACCCGGATTTAGTC
1 ACTCGCACAATTGCCTTCGGGACATAG-CCCGG-TTTAGTA
* ** *
72122534 ACTTAGCACAAAAGCCTTCGGGACTTAGCCCGG
1 AC-TCGCACAATTGCCTTCGGGACATAGCCCGG
72122567 ACACCATTCG
Statistics
Matches: 120, Mismatches: 25, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
39 3 0.03
40 89 0.74
41 26 0.22
42 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (39 bp):
ACTCGCACAATTGCCTTCGGGACATAGCCCGGTTTAGTA
Found at i:72122500 original size:80 final size:80
Alignment explanation
Indices: 72122374--72122530 Score: 199
Period size: 80 Copynumber: 2.0 Consensus size: 80
72122364 GGATATAGCG
* * * * * * *
72122374 ACTCGCTCGATTGTCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAATTGCCTTCGGGAATT
1 ACTCGCACGAGTGCCTTCGGGACATAACCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
72122439 -AGCCCGGATTTAATA
66 GA-CCCGGATTTAATA
* * * *
72122454 ACTCGCACGAGTGCCTTCGGGACTTAACCCAGTTTTGGTAACTCGCACAAATGCCTTCGGGAGTT
1 ACTCGCACGAGTGCCTTCGGGACATAACCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
72122519 GACCCGGATTTA
66 GACCCGGATTTA
72122531 GTCACTTAGC
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
80 64 0.98
81 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (80 bp):
ACTCGCACGAGTGCCTTCGGGACATAACCCAGTTATAGTAACTCGCACAAATGCCTTCGGGAATT
GACCCGGATTTAATA
Found at i:72125673 original size:42 final size:42
Alignment explanation
Indices: 72125559--72125722 Score: 159
Period size: 42 Copynumber: 3.9 Consensus size: 42
72125549 AGCAAGATAC
* * * **
72125559 CAATGCCATATCCCAGATATGGTATTACATGGGATCACATAT
1 CAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATAT
* * ** ** *
72125601 CGATCCCGAT-TCCCTAGCTATGGTCTTACACGATGTCTCATAT
1 CAATGCC-ATATCCC-AGAAATGGTCTTACACGAAATCACATAT
* * * *
72125644 CGATGCCATGTCCCAGACATGGTTTTACACGAAATCACATAT
1 CAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATAT
72125686 CAATGCCATATCCCAGAAATGGTCTTACACGAAATCA
1 CAATGCCATATCCCAGAAATGGTCTTACACGAAATCA
72125723 TACAAAACCC
Statistics
Matches: 99, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
42 66 0.67
43 33 0.33
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
CAATGCCATATCCCAGAAATGGTCTTACACGAAATCACATAT
Found at i:72125685 original size:85 final size:84
Alignment explanation
Indices: 72125561--72125717 Score: 199
Period size: 85 Copynumber: 1.9 Consensus size: 84
72125551 CAAGATACCA
* * ** * **
72125561 ATGCCATATCCCAGATATGGTATTACATGGGATCACATATCGATCCCGAT-TCCCTAGCTATGGT
1 ATGCCATATCCCAGACATGGTATTACACGAAATCACATATCAATCCC-ATATCCC-AGAAATGGT
72125625 CTTACACGATGTCTCATATCG
64 CTTACACGATGTCTCATATCG
* * *
72125646 ATGCCATGTCCCAGACATGGTTTTACACGAAATCACATATCAATGCCATATCCCAGAAATGGTCT
1 ATGCCATATCCCAGACATGGTATTACACGAAATCACATATCAATCCCATATCCCAGAAATGGTCT
72125711 TACACGA
66 TACACGA
72125718 AATCATACAA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
84 18 0.30
85 43 0.70
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTATTACACGAAATCACATATCAATCCCATATCCCAGAAATGGTCT
TACACGATGTCTCATATCG
Found at i:72130068 original size:44 final size:43
Alignment explanation
Indices: 72129912--72130068 Score: 162
Period size: 44 Copynumber: 3.7 Consensus size: 43
72129902 AGCTTGTACA
* * *
72129912 ATGCCAACGTCCCAGACGTGGTCTTACATGT--ATTCAAATATCA
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATTC-AAT-TCG
* * *
72129955 ATGCCATTGTCCCAGACAG-GGTCTTACA--TAAAATCAATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAAATTCAATTCG
* *
72129996 ATGCCAATGTCCCAGACATGGTTTTACACGTAAATCTCAATTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAAAT-TCAATTCG
*
72130040 ATGCCAATGTCCCAGACGTGTTCTTACAC
1 ATGCCAATGTCCCAGACGTGGTCTTACAC
72130069 AGAATCACAT
Statistics
Matches: 94, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 26 0.28
42 3 0.03
43 31 0.33
44 34 0.36
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAAATTCAATTCG
Found at i:72136268 original size:40 final size:40
Alignment explanation
Indices: 72136196--72136407 Score: 168
Period size: 40 Copynumber: 5.6 Consensus size: 40
72136186 GCTACTCGTC
* *
72136196 CAAATGCCTTCGGGACATAGCCC-GGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCA
*
72136236 CAAATGCCTTCGGGACTTAACCCAGATTTAG----T----
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* *
72136268 --AATGCCTTCGGG-CTTAGCCCGGGA-TTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCC-AGATTTAGTAACTCGCA
*
72136305 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAACTCGCA
* * * * *
72136345 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAAC-TCGCA
72136386 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
72136408 GGTCATCATT
Statistics
Matches: 142, Mismatches: 13, Indels: 34
0.75 0.07 0.18
Matches are distributed among these distances:
29 11 0.08
30 14 0.10
33 1 0.01
36 1 0.01
38 2 0.01
39 11 0.08
40 88 0.62
41 14 0.10
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
Found at i:72136310 original size:69 final size:70
Alignment explanation
Indices: 72136198--72136338 Score: 198
Period size: 69 Copynumber: 2.0 Consensus size: 70
72136188 TACTCGTCCA
* *
72136198 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCAGA
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCAGA
72136262 TTTAGT
65 TTTAGT
* **
72136268 AATGCCTTCGGG-CTTAGCCCGGGAT-TAGTAACTCACACAAATGCCTTCGGATCTTAGTCCAGA
1 AATGCCTTCGGGACATAGCCC-GGATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCAGA
72136331 TTTAGT
65 TTTAGT
72136337 AA
1 AA
72136339 CTCGCACAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
68 3 0.05
69 46 0.72
70 15 0.23
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (70 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCAGAT
TTAGT
Found at i:72141751 original size:49 final size:49
Alignment explanation
Indices: 72141682--72142140 Score: 722
Period size: 49 Copynumber: 9.1 Consensus size: 49
72141672 GTACATAATA
72141682 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
72141731 ATATATGTGATAAGGCCTAATGGCCGATGTGACGAATGTGAAAGTGTAC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
72141780 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
72141829 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * *
72141878 ATATATGTGATAAGGCCTAATGGCCTAATGGCCGACGTGATGAATATGGAAGTGTAT
1 ATATATGTG---A----TAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
72141935 ATATATGTG-TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
72141983 ATATATGTGAACATATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTG-----ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
72142037 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
*
72142086 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
72142135 ATATAT
1 ATATAT
72142141 ATATGTGGTA
Statistics
Matches: 381, Mismatches: 15, Indels: 28
0.90 0.04 0.07
Matches are distributed among these distances:
48 42 0.11
49 245 0.64
52 1 0.00
54 48 0.13
56 3 0.01
57 42 0.11
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:72142266 original size:37 final size:36
Alignment explanation
Indices: 72142211--72142297 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
72142201 AACTTGGAAA
72142211 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
72142249 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
72142286 TATGTCCGGGTA
1 TATGTCCGGGTA
72142298 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:72148982 original size:40 final size:39
Alignment explanation
Indices: 72148937--72149159 Score: 199
Period size: 40 Copynumber: 5.6 Consensus size: 39
72148927 TACTCGTCCA
*
72148937 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* *
72148976 AGATGCCTTCGGGACTTAACCCGGATT-TACTAACTCGCACC
1 A-ATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA-C
* *
72149017 AATGCCTTCAGG-CTTAGCCCGG-GATTAGTAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCAC
*
72149055 AAATGCCTTC-GGATCTTAGTCCGGATT-TAGTAACTCACGCA-
1 -AATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACT--CGCAC
* * * *
72149096 AATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCAC
*
72149136 AAAGCCTTCGGGACTTAGCCCGGT
1 AATGCCTTCGGGACTTAGCCCGGT
72149160 CATCATTCGA
Statistics
Matches: 153, Mismatches: 15, Indels: 31
0.77 0.08 0.16
Matches are distributed among these distances:
38 3 0.02
39 34 0.22
40 104 0.68
41 8 0.05
42 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:72149047 original size:79 final size:78
Alignment explanation
Indices: 72148935--72149158 Score: 247
Period size: 79 Copynumber: 2.8 Consensus size: 78
72148925 GCTACTCGTC
* * *
72148935 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCACA-ATGCCTTCGGGACTTAGCCCGG
*
72149000 ATTTACTAACTCGCA
64 ATTTACTAACTCACA
* *
72149015 CCAATGCCTTCAGG-CTTAGCCCGGGAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTC-GGACTTAGCCC-GGATATAGTAACTCGCAC-AATGCCTTCGGGA-CTTAGCCC
* *
72149077 GGATTTAGTAACTCACG
62 GGATTTACTAACTCACA
* * * *
72149094 CAAATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGA-CTTAGCCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
72149159 TCATCATTCG
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
78 5 0.04
79 62 0.51
80 46 0.38
81 8 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAT
TTACTAACTCACA
Found at i:72151359 original size:28 final size:28
Alignment explanation
Indices: 72151322--72151375 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
72151312 TATATATTAC
72151322 AAATTCTTTACCCGATTCTAGTTGTATT
1 AAATTCTTTACCCGATTCTAGTTGTATT
* *
72151350 AAATTTTTTACCCGATTCTGGTTGTA
1 AAATTCTTTACCCGATTCTAGTTGTA
72151376 CTAACATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (28 bp):
AAATTCTTTACCCGATTCTAGTTGTATT
Found at i:72154201 original size:49 final size:49
Alignment explanation
Indices: 72154141--72154588 Score: 770
Period size: 49 Copynumber: 9.1 Consensus size: 49
72154131 GTATGAGATA
* *
72154141 TATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
72154190 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
72154239 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTATG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
72154288 AATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
72154337 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
72154386 AATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
72154435 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
72154484 AATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
* *
72154533 TACATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
72154582 TATATAT
1 TATATAT
72154589 ATATGTGGTA
Statistics
Matches: 380, Mismatches: 19, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 380 1.00
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTG
Found at i:72154714 original size:37 final size:36
Alignment explanation
Indices: 72154659--72154745 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
72154649 AACTTGGAAA
72154659 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
72154697 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
*
72154734 TATGTCCAGGTA
1 TATGTCCGGGTA
72154746 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:72157999 original size:53 final size:54
Alignment explanation
Indices: 72157937--72158334 Score: 381
Period size: 55 Copynumber: 7.5 Consensus size: 54
72157927 ATTGCCATAT
* * * *
72157937 CTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAACGTCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATGCCATGC
* * * *
72157990 CTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAATAACTCATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-AGAACTCATCAATGCCATGC
* *
72158045 CTTGACATGGTCTTACATGGTATCCTTTCCTTAT-GAACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATGCCATGC
* * * * *
72158098 CTTGGCATGGTCTTGCATGGGA-CCTTTGCCTTATAGTAACTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG-AACTCATCAATGCCATGC
* * *
72158153 CTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATGCCATGC
* * * **
72158207 CTTGGCATGATCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATGCCATG--C
** * * *
72158255 C-AAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATGCCATGC
* *
72158308 CTTGGCATGGTCTTACATGATATCCTT
1 CTTGACATGGTCTTACATGGTATCCTT
72158335 ATCTTACCAA
Statistics
Matches: 281, Mismatches: 45, Indels: 37
0.77 0.12 0.10
Matches are distributed among these distances:
46 9 0.03
47 22 0.08
48 4 0.01
49 3 0.01
52 7 0.02
53 74 0.26
54 64 0.23
55 94 0.33
56 4 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAATGCCATGC
Found at i:72158118 original size:108 final size:109
Alignment explanation
Indices: 72157929--72158326 Score: 503
Period size: 108 Copynumber: 3.7 Consensus size: 109
72157919 AACTTACCAT
* * * *
72157929 TGCCATATCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAACGTCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
72157993 GGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
66 GGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
*
72158037 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTAT-GAACTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
* * *
72158101 GGCATGGTCTTGCATGGGACCTTTGCCTTATAGTAACTTATCAA
66 GGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
* * * *
72158145 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
* * * *
72158210 GGCATGATCTTACAT--GA--TAT-CCTTAT-CTTAC-CA--AA
66 GGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
*** * * * *
72158245 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGTCT
1 TGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCT
72158310 TGGCATGGTCTTACATG
65 TGGCATGGTCTTACATG
72158327 ATATCCTTAT
Statistics
Matches: 260, Mismatches: 27, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
100 9 0.03
101 65 0.25
102 1 0.00
103 3 0.01
104 6 0.02
105 2 0.01
107 2 0.01
108 139 0.53
109 33 0.13
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (109 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
GGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
Found at i:72158272 original size:47 final size:47
Alignment explanation
Indices: 72158212--72158370 Score: 167
Period size: 47 Copynumber: 3.2 Consensus size: 47
72158202 CATGCCTTGG
*
72158212 CATGATCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * ****
72158259 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG-TCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCCAAA
72158313 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
72158360 CATGGTCTTAC
1 CATGGTCTTAC
72158371 CTTATCCTTG
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
46 9 0.10
47 35 0.40
48 2 0.02
49 3 0.03
52 3 0.03
53 2 0.02
54 25 0.28
55 9 0.10
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:72158280 original size:101 final size:101
Alignment explanation
Indices: 72158157--72158370 Score: 383
Period size: 101 Copynumber: 2.1 Consensus size: 101
72158147 CCATGTCTTG
*
72158157 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
72158222 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* * * *
72158258 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGTCTTGGCATGGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
72158323 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
72158359 ACATGGTCTTAC
1 ACATGGTCTTAC
72158371 CTTATCCTTG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 108 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (101 bp):
ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:72158428 original size:93 final size:96
Alignment explanation
Indices: 72158157--72158419 Score: 282
Period size: 101 Copynumber: 2.7 Consensus size: 96
72158147 CCATGTCTTG
* * *** * *
72158157 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
1 ACATGGTCTTACATG-TATCCTTGTCTTATAG-AC---TCAATGCCACATCTTGACATGGTCTTA
72158222 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
61 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
** *
72158258 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGTCTTGGCATGGTCTTA
1 ACATGGTCTTACAT-GTATCCTTGTCTTATAG-AC---TCAATGCCACATCTTGACATGGTCTTA
72158323 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
61 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* **
72158359 ACATGGTCTTACCT-TATCCTTGTCTTAGT-G-C-CAATGCCACATCTTGATGTGGTCTTACATG
1 ACATGGTCTTACATGTATCCTTGTCTTA-TAGACTCAATGCCACATCTTGACATGGTCTTACATG
72158420 GAGTCCTTAA
Statistics
Matches: 150, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
93 25 0.17
97 1 0.01
99 14 0.09
100 1 0.01
101 108 0.72
102 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (96 bp):
ACATGGTCTTACATGTATCCTTGTCTTATAGACTCAATGCCACATCTTGACATGGTCTTACATGA
TATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:72158518 original size:45 final size:45
Alignment explanation
Indices: 72158292--72158519 Score: 149
Period size: 45 Copynumber: 5.0 Consensus size: 45
72158282 TCTTATAGAA
* * * **
72158292 CTTATCAATGCCATGTCTTGGCATGGTCTTACATGATATCCTTAT
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
*** * *
72158337 CTTACCAAATGCCATGTTCCAAACATGGTCTTACCT--TATCCTTGT
1 CTTACC-AATGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGC
** ** *
72158382 CTTAGTGCCAATGCCACATCTTGATGTGGTCTTACATGG-AGTCCTTAATC
1 CTTA---CCAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTT--GC
** * * * *
72158432 AATACCAATGTCATTTCTTGACAGGGTCTTACACGAG-ATCCTTGC
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATG-GTATCCTTGC
*
72158477 CTTACCAATGCCATGTCTTGACATGGTTTTACATGGTATCCTT
1 CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
72158520 AACCGTCAAT
Statistics
Matches: 137, Mismatches: 34, Indels: 24
0.70 0.17 0.12
Matches are distributed among these distances:
44 1 0.01
45 52 0.38
46 22 0.16
47 51 0.37
48 9 0.07
50 2 0.01
ACGTcount: A:0.23, C:0.25, G:0.16, T:0.36
Consensus pattern (45 bp):
CTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGC
Found at i:72158591 original size:44 final size:44
Alignment explanation
Indices: 72158522--72158608 Score: 104
Period size: 44 Copynumber: 2.0 Consensus size: 44
72158512 GTATCCTTAA
* * *
72158522 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCCTAAATGCCATGGTA-CAACCATGGACTTTT
* * *
72158566 CCGTCAATTCTTCCCTAATTTCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCCTAAATGCCATGGTACAACCATGGACTTT
72158609 GAGAGATCAA
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
43 2 0.06
44 34 0.94
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.36
Consensus pattern (44 bp):
CCGTCAATTCCTCCCTAAATGCCATGGTACAACCATGGACTTTT
Found at i:72162943 original size:6 final size:5
Alignment explanation
Indices: 72162914--72163001 Score: 65
Period size: 5 Copynumber: 16.6 Consensus size: 5
72162904 TATGTCTTTC
* *
72162914 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
72162962 AAAAAT AAAAT AAAAT AAAAAT AAAACT -AAAT AAAAT AAA
1 -AAAAT AAAAT AAAAT -AAAAT AAAA-T AAAAT AAAAT AAA
72163002 TATGAGGATT
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
3 3 0.04
4 1 0.01
5 32 0.47
6 32 0.47
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:72162946 original size:17 final size:17
Alignment explanation
Indices: 72162924--72162987 Score: 78
Period size: 16 Copynumber: 3.8 Consensus size: 17
72162914 AAAATAAAAT
* *
72162924 AATAAAATTGAAATGAA
1 AATAAAAATAAAATGAA
72162941 AATAAAAATCAAAA-GAAA
1 AATAAAAAT-AAAATG-AA
72162959 AATAAAAATAAAAT-AA
1 AATAAAAATAAAATGAA
72162975 AATAAAAATAAAA
1 AATAAAAATAAAA
72162988 CTAAATAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 15 0.36
17 13 0.31
18 14 0.33
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.17
Consensus pattern (17 bp):
AATAAAAATAAAATGAA
Found at i:72162965 original size:11 final size:11
Alignment explanation
Indices: 72162914--72163001 Score: 74
Period size: 11 Copynumber: 7.7 Consensus size: 11
72162904 TATGTCTTTC
72162914 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
72162927 AAAATTGAAAT
1 AAAATAAAAAT
72162938 GAAAATAAAAAT
1 -AAAATAAAAAT
*
72162950 CAAAAGAAAAAT
1 -AAAATAAAAAT
72162962 AAAA-ATAAAAT
1 AAAATA-AAAAT
72162973 AAAATAAAAAT
1 AAAATAAAAAT
72162984 AAAACT--AAAT
1 AAAA-TAAAAAT
72162994 AAAATAAA
1 AAAATAAA
72163002 TATGAGGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
9 1 0.02
10 9 0.14
11 26 0.41
12 22 0.35
13 5 0.08
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:72172160 original size:40 final size:40
Alignment explanation
Indices: 72172055--72172261 Score: 287
Period size: 40 Copynumber: 5.2 Consensus size: 40
72172045 CGGATGATAA
* *
72172055 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
72172095 CCAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
72172134 CCGGGCTAAGTCCCGACGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
72172174 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
72172214 CCGAGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
72172254 CC-GGCTAA
1 CCGGGCTAA
72172262 ATTCCAAAGG
Statistics
Matches: 152, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 41 0.27
40 111 0.73
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:72177930 original size:29 final size:29
Alignment explanation
Indices: 72177897--72177996 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
72177887 GGGACGAGAT
* * *
72177897 TGGCACTGAGTGTCCGAGCTTGTAATGTA
1 TGGCACTAAGTGTCCGAGCTTGGAATATA
* * *
72177926 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTCCGAGCTTGGAATATA
* * * *
72177955 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTCCGAGCTTGGAAT-ATA
72177984 TGGCACTAAGTGT
1 TGGCACTAAGTGT
72177997 GTGTGATTGA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
28 3 0.05
29 55 0.95
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTCCGAGCTTGGAATATA
Found at i:72180515 original size:40 final size:40
Alignment explanation
Indices: 72180457--72180624 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
72180447 CAATTGAATG
* *
72180457 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
72180498 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
72180537 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
72180577 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
72180617 ATATCCGG
1 ATATCCGG
72180625 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:72180595 original size:80 final size:79
Alignment explanation
Indices: 72180457--72180624 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
72180447 CAATTGAATG
* * *
72180457 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
72180522 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
72180537 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
72180601 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
72180617 ATATCCGG
1 ATATCCGG
72180625 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:72184002 original size:40 final size:40
Alignment explanation
Indices: 72183944--72184111 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
72183934 CAATTGAATG
* *
72183944 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
72183985 -TATCCGGGCTAATACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
72184024 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
72184064 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
72184104 ATATCCGG
1 ATATCCGG
72184112 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:72184082 original size:80 final size:79
Alignment explanation
Indices: 72183944--72184111 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
72183934 CAATTGAATG
* * *
72183944 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGCTAATACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
72184009 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
72184024 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
72184088 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
72184104 ATATCCGG
1 ATATCCGG
72184112 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:72186680 original size:39 final size:39
Alignment explanation
Indices: 72186587--72186735 Score: 156
Period size: 40 Copynumber: 3.8 Consensus size: 39
72186577 ATTGAATGAT
* * * * * *
72186587 ATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTA
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
* * *
72186626 TAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTA
1 -ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
* *
72186666 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT-A
*
72186706 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
72186736 AAATCGTGAT
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
38 3 0.03
39 29 0.32
40 57 0.63
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTTA
Found at i:72186750 original size:40 final size:38
Alignment explanation
Indices: 72186581--72186757 Score: 144
Period size: 40 Copynumber: 4.5 Consensus size: 38
72186571 TGAGAAATTG
* * *
72186581 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * * *
72186621 AAT-TATAACCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
72186658 AGTAGCTA-ATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
72186697 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
*
72186737 AATCGTGATATCCGGGTTAAG
1 AAT-GT-ATATCCGGGCTAAG
72186758 TCCGTAGGCC
Statistics
Matches: 110, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 34 0.31
40 70 0.64
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:72195946 original size:29 final size:28
Alignment explanation
Indices: 72195914--72196016 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72195904 GGGACGAGAT
* *
72195914 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
72195943 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
72195972 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
72196001 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72196017 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:72201924 original size:30 final size:30
Alignment explanation
Indices: 72201869--72202028 Score: 222
Period size: 29 Copynumber: 5.5 Consensus size: 30
72201859 ATAGTGAATC
72201869 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
72201898 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
72201928 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
*
72201957 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
72201985 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
72202015 CGCACACTTAGTGC
1 CGCACACTTAGTGC
72202029 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.18
29 48 0.40
30 47 0.39
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:72201961 original size:59 final size:57
Alignment explanation
Indices: 72201869--72202028 Score: 223
Period size: 59 Copynumber: 2.8 Consensus size: 57
72201859 ATAGTGAATC
*
72201869 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
72201928 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
72201985 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
72202029 CAATCTTGTC
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 50 0.54
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:72207072 original size:29 final size:28
Alignment explanation
Indices: 72207040--72207142 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
72207030 GGGACGAGAT
* *
72207040 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
72207069 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
72207098 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
72207127 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
72207143 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:72211570 original size:74 final size:74
Alignment explanation
Indices: 72211449--72211594 Score: 274
Period size: 74 Copynumber: 2.0 Consensus size: 74
72211439 AAAATTAAGC
72211449 CTCTATTCAACTAAAACAAAAAACTTTAGCTCAAGACAAGCTTTGAACCTAAGACTTCTCAGACA
1 CTCTATTCAACTAAAACAAAAAACTTTAGCTCAAGACAAGCTTTGAACCTAAGACTTCTCAGACA
72211514 CCCACAAGG
66 CCCACAAGG
* *
72211523 CTCTATTCAATTAAAACAAAAAACTTTAGTTCAAGACAAGCTTTGAACCTAAGACTTCTCAGACA
1 CTCTATTCAACTAAAACAAAAAACTTTAGCTCAAGACAAGCTTTGAACCTAAGACTTCTCAGACA
72211588 CCCACAA
66 CCCACAA
72211595 CACACATAAC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 70 1.00
ACGTcount: A:0.41, C:0.26, G:0.10, T:0.23
Consensus pattern (74 bp):
CTCTATTCAACTAAAACAAAAAACTTTAGCTCAAGACAAGCTTTGAACCTAAGACTTCTCAGACA
CCCACAAGG
Found at i:72213753 original size:17 final size:17
Alignment explanation
Indices: 72213733--72213769 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
72213723 GTAATGCCCC
72213733 AAAAATCTCAAAA-CCT
1 AAAAATCTCAAAATCCT
72213749 AAAAATCTCAAAATCCT
1 AAAAATCTCAAAATCCT
72213766 AAAA
1 AAAA
72213770 TTTCTTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAAATCTCAAAATCCT
Found at i:72214977 original size:16 final size:16
Alignment explanation
Indices: 72214956--72214986 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
72214946 TCGACAAAAG
*
72214956 CTGAAAAGTTGAAATA
1 CTGAAAAGCTGAAATA
72214972 CTGAAAAGCTGAAAT
1 CTGAAAAGCTGAAAT
72214987 GTCAAAAAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.23
Consensus pattern (16 bp):
CTGAAAAGCTGAAATA
Found at i:72215255 original size:29 final size:29
Alignment explanation
Indices: 72215220--72215319 Score: 121
Period size: 29 Copynumber: 3.4 Consensus size: 29
72215210 TGAATATAAG
* *
72215220 GTGATTTGGGCCTAATGGGCCATAT-AAT
1 GTGAATTGGGCCTAATAGGCCATATGAAT
* *
72215248 GGTGATTTGGGCCTAATAGGCCCTATGAAT
1 -GTGAATTGGGCCTAATAGGCCATATGAAT
* *
72215278 ATGAATTGGGCCTAATAGGCGATATGAAT
1 GTGAATTGGGCCTAATAGGCCATATGAAT
*
72215307 GTGAATTGAGCCT
1 GTGAATTGGGCCT
72215320 GATGGAAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
29 59 0.95
30 3 0.05
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (29 bp):
GTGAATTGGGCCTAATAGGCCATATGAAT
Found at i:72228384 original size:41 final size:39
Alignment explanation
Indices: 72228321--72228464 Score: 180
Period size: 40 Copynumber: 3.6 Consensus size: 39
72228311 TACTCGAATG
* *
72228321 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCC-GAAGGCATTTGTGCT-AGTGACT
* * *
72228362 ACATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGTGACT
* *
72228402 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACT
*
72228442 ATATCCGGGCTAAGACCGAAGGC
1 ATATCCGGGCTAAGTCCGAAGGC
72228465 CTTGGGAGTG
Statistics
Matches: 90, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 9 0.10
40 52 0.58
41 26 0.29
42 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACT
Found at i:72231472 original size:29 final size:29
Alignment explanation
Indices: 72231439--72231542 Score: 145
Period size: 29 Copynumber: 3.6 Consensus size: 29
72231429 CCTCCGAACT
** * * *
72231439 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
72231468 TGCACACTTAGTGCCAAATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72231497 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72231526 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
72231543 CTCGTCACCT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72238563 original size:29 final size:29
Alignment explanation
Indices: 72238535--72238665 Score: 201
Period size: 29 Copynumber: 4.6 Consensus size: 29
72238525 CCTCCGAGCT
** * * *
72238535 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
*
72238564 TGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72238592 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72238621 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
72238650 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72238666 ATCTCGTCAC
Statistics
Matches: 94, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
28 25 0.27
29 69 0.73
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72238606 original size:57 final size:58
Alignment explanation
Indices: 72238535--72238665 Score: 201
Period size: 57 Copynumber: 2.3 Consensus size: 58
72238525 CCTCCGAGCT
** * * **
72238535 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACTTAGTGCCA-ATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
72238592 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
72238650 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
72238666 ATCTCGTCAC
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
57 39 0.58
58 28 0.42
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCATATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
Found at i:72239894 original size:17 final size:18
Alignment explanation
Indices: 72239851--72239895 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
72239841 ACACTTTTTT
72239851 TTTCTTATTTT-ATTCCCC
1 TTTCTTATTTTAATT-CCC
72239869 TTTC-T-TTTTAATT-CC
1 TTTCTTATTTTAATTCCC
72239884 TTTCTTATTTTA
1 TTTCTTATTTTA
72239896 GTTTGTCTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
15 6 0.25
16 5 0.21
17 9 0.38
18 4 0.17
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTCTTATTTTAATTCCC
Found at i:72241790 original size:40 final size:40
Alignment explanation
Indices: 72241735--72241944 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72241725 AACATTGGAA
72241735 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72241775 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72241815 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
72241855 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
72241894 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
72241935 CTATATCCGG
1 ATATATCCGG
72241945 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:72244820 original size:46 final size:46
Alignment explanation
Indices: 72244744--72245007 Score: 147
Period size: 46 Copynumber: 5.7 Consensus size: 46
72244734 ATGTAACCCG
* * * * *
72244744 TCCATAAGCGAACTCAGACTCAATTCAACGAGCTTGGGCATTCGCA
1 TCCACAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCATTCACA
*
72244790 TCCACAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA
1 TCCACAAGTGAACTCGGACTCAACTCAACGAGCTTGG--G-C-A-TTCACA
* * *
72244840 T-CTC---TCGAACTCGGACTCAACTCAACGAG-TTCAGACATTCACA
1 TCCACAAGT-GAACTCGGACTCAACTCAACGAGCTT-GGGCATTCACA
* * *
72244883 TCCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACA
1 TCCACAAGTGAACTCGGACTCAACTCAACGAGCTTGG--G-C-A-TTCACA
* * * * *
72244933 TCTCTC-A---AACTCAGACTCAACTCAACGAG-TTCAGACATTCGCA
1 TC-CACAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCATTCACA
* *
72244976 TCCATAAGTGAACTCGAACTCAACTCAACGAG
1 TCCACAAGTGAACTCGGACTCAACTCAACGAG
72245008 TTCGGATGCC
Statistics
Matches: 165, Mismatches: 28, Indels: 50
0.68 0.12 0.21
Matches are distributed among these distances:
42 5 0.03
43 11 0.07
44 3 0.02
46 78 0.47
47 47 0.28
48 1 0.01
49 4 0.02
50 11 0.07
51 5 0.03
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (46 bp):
TCCACAAGTGAACTCGGACTCAACTCAACGAGCTTGGGCATTCACA
Found at i:72244858 original size:47 final size:47
Alignment explanation
Indices: 72244799--72244961 Score: 185
Period size: 47 Copynumber: 3.5 Consensus size: 47
72244789 ATCCACAAGT
72244799 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* * *
72244846 GAACTCGGACTCAACTCAACGAGTTC--A-GAC-A-TTCACATC-CATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-T---C
*
72244892 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
* *
72244939 AAACTCAGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
72244962 TTCAGACATT
Statistics
Matches: 95, Mismatches: 10, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 2 0.02
45 1 0.01
46 24 0.25
47 45 0.47
48 1 0.01
49 2 0.02
50 7 0.07
51 3 0.03
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:72244879 original size:93 final size:93
Alignment explanation
Indices: 72244752--72245017 Score: 426
Period size: 93 Copynumber: 2.9 Consensus size: 93
72244742 CGTCCATAAG
* * * *
72244752 CGAACTCAGACTCAATTCAACGAGCTT-GGGCATTCGCATCCACAAGTGAACTCGGACTCAACTC
1 CGAACTCAGACTCAACTCAACGAG-TTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
72244816 AACGAGCTCGGATGCCTAGTTACATCTCT
65 AACGAGCTCGGATGCCTAGTTACATCTCT
* *
72244845 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
72244910 ATGAGCTCGGATGCCTAGTTACATCTCT
66 ACGAGCTCGGATGCCTAGTTACATCTCT
* *
72244938 CAAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCA
1 CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
72245003 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
72245018 CAAATATCCT
Statistics
Matches: 159, Mismatches: 13, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
92 2 0.01
93 157 0.99
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (93 bp):
CGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCT
Found at i:72245008 original size:46 final size:46
Alignment explanation
Indices: 72244846--72245010 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 46
72244836 TACATCTCTC
*
72244846 GAACTCGGACTCAACTCAACGAGTTCAGACATTCACATCCATAAGT
1 GAACTCGAACTCAACTCAACGAGTTCAGACATTCACATCCATAAGT
* * * * *
72244892 GAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT-ACATCTC-TCA--
1 GAACTCGAACTCAACTCAACGAGTTC--A-GAC-A-TTCACATC-CATAAGT
*
72244940 -AACTC-AGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGA-ACTCAACTCAACGAGTTCAGACATTCACATCCATAAGT
72244985 GAACTCGAACTCAACTCAACGAGTTC
1 GAACTCGAACTCAACTCAACGAGTTC
72245011 GGATGCCCAA
Statistics
Matches: 96, Mismatches: 10, Indels: 26
0.73 0.08 0.20
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 2 0.02
45 1 0.01
46 47 0.49
47 22 0.23
48 1 0.01
49 2 0.02
50 8 0.08
51 3 0.03
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (46 bp):
GAACTCGAACTCAACTCAACGAGTTCAGACATTCACATCCATAAGT
Found at i:72249076 original size:17 final size:17
Alignment explanation
Indices: 72249050--72249083 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
72249040 TATACAATGG
*
72249050 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
72249067 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
72249084 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:72250953 original size:17 final size:18
Alignment explanation
Indices: 72250911--72250959 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
72250901 AGTTGAAAAG
72250911 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
72250930 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
72250947 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
72250960 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:72251847 original size:40 final size:40
Alignment explanation
Indices: 72251781--72251947 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
72251771 AAATTGAATG
* * *
72251781 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
72251820 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
72251860 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
72251900 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
72251940 ATATCCGG
1 ATATCCGG
72251948 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72258957 original size:17 final size:18
Alignment explanation
Indices: 72258915--72258963 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
72258905 AGTTGAAAAG
72258915 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
72258934 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
72258951 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
72258964 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:72259851 original size:40 final size:40
Alignment explanation
Indices: 72259785--72259951 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
72259775 AAATTGAATG
* * *
72259785 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
72259824 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
72259864 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
72259904 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
72259944 ATATCCGG
1 ATATCCGG
72259952 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:72261499 original size:24 final size:24
Alignment explanation
Indices: 72261468--72261559 Score: 148
Period size: 24 Copynumber: 3.8 Consensus size: 24
72261458 GAAATGATTT
72261468 TGGCACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
* *
72261492 CGACACTATGTGTGCGGATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
*
72261516 TGGCACTATGTGTGCAGATTTGTA
1 TGGCACTATGTGTGCGGATTTGTA
*
72261540 TGGCACTATGTGTTCGGATT
1 TGGCACTATGTGTGCGGATT
72261560 GGAATGTCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 61 1.00
ACGTcount: A:0.18, C:0.14, G:0.30, T:0.37
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGTA
Done.