Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 231 of 325
Found at i:72261574 original size:48 final size:48
Alignment explanation
Indices: 72261468--72261574 Score: 133
Period size: 48 Copynumber: 2.2 Consensus size: 48
72261458 GAAATGATTT
* * * *
72261468 TGGCACTATGTGTGCGGATTTGTACGACACTATGTGTGCGGATTTGTA
1 TGGCAATATGTGTGCAGATTTGTACGACACTATGTGTGCGGATTGGAA
* * * *
72261516 TGGCACTATGTGTGCAGATTTGTATGGCACTATGTGTTCGGATTGGAA
1 TGGCAATATGTGTGCAGATTTGTACGACACTATGTGTGCGGATTGGAA
*
72261564 TGTCAATATGT
1 TGGCAATATGT
72261575 ATGTGAATTA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 51 1.00
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (48 bp):
TGGCAATATGTGTGCAGATTTGTACGACACTATGTGTGCGGATTGGAA
Found at i:72264648 original size:28 final size:29
Alignment explanation
Indices: 72264617--72264731 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
72264607 TACTTGTATC
* *
72264617 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
72264645 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
*
72264674 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
* *
72264703 TGGCCCGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
72264731 T
1 T
72264732 TCATGCTTAC
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 27 0.35
29 49 0.64
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:72264812 original size:17 final size:18
Alignment explanation
Indices: 72264790--72264823 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
72264780 TGCCTATTAT
72264790 GGGCCCA-ATAGCCCATC
1 GGGCCCATATAGCCCATC
*
72264807 GGGCCCATTTAGCCCAT
1 GGGCCCATATAGCCCAT
72264824 TCTGGCCCGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (18 bp):
GGGCCCATATAGCCCATC
Found at i:72268762 original size:53 final size:53
Alignment explanation
Indices: 72268682--72268787 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
72268672 AAACAATTAC
72268682 TTAGTTTTAACAACAAATTTAAGTAAAAAGGTGATAAATTACAGAGGAAAAAT
1 TTAGTTTTAACAACAAATTTAAGTAAAAAGGTGATAAATTACAGAGGAAAAAT
*
72268735 TTAGTTTTAACAACAAATTTAAGTAAAAAGGTGATAAATTACATAGGAAAAAT
1 TTAGTTTTAACAACAAATTTAAGTAAAAAGGTGATAAATTACAGAGGAAAAAT
72268788 CCTATATATT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (53 bp):
TTAGTTTTAACAACAAATTTAAGTAAAAAGGTGATAAATTACAGAGGAAAAAT
Found at i:72270233 original size:42 final size:42
Alignment explanation
Indices: 72270186--72270277 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
72270176 TGGCCCTTAG
* ** *
72270186 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
72270228 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
72270270 GCCCATTT
1 GCCCATTT
72270278 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:72270499 original size:26 final size:26
Alignment explanation
Indices: 72270428--72270570 Score: 218
Period size: 26 Copynumber: 5.6 Consensus size: 26
72270418 TAATAATTGC
72270428 GGCA-AAGCCCTTTTCGGTAAACTGG
1 GGCATAAGCCCTTTTCGGTAAACTGG
72270453 GGCA-AAGCCCTTTTCGGTAAACTGG
1 GGCATAAGCCCTTTTCGGTAAACTGG
***
72270478 GGCATAAGCCCTTTTTAATAAACTGG
1 GGCATAAGCCCTTTTCGGTAAACTGG
*
72270504 GGCATAAACCCTTTTCGGTAAACTGG
1 GGCATAAGCCCTTTTCGGTAAACTGG
**
72270530 GGCATAAGCCCTTTTCAATAAACTGG
1 GGCATAAGCCCTTTTCGGTAAACTGG
72270556 GGCATAAGCCCTTTT
1 GGCATAAGCCCTTTT
72270571 GCACTTCCTC
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 29 0.27
26 78 0.73
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GGCATAAGCCCTTTTCGGTAAACTGG
Found at i:72271042 original size:20 final size:22
Alignment explanation
Indices: 72271017--72271058 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
72271007 TGGGTCTGGA
72271017 AGCCCATTG-GGCCCAA-TTTC
1 AGCCCATTGAGGCCCAACTTTC
72271037 AGCCCATTGAGGCCCAACTTTC
1 AGCCCATTGAGGCCCAACTTTC
72271059 CATCGTGCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 9 0.45
21 7 0.35
22 4 0.20
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.24
Consensus pattern (22 bp):
AGCCCATTGAGGCCCAACTTTC
Found at i:72271471 original size:27 final size:27
Alignment explanation
Indices: 72271376--72271462 Score: 131
Period size: 27 Copynumber: 3.2 Consensus size: 27
72271366 TATTCGTCAT
* *
72271376 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
72271403 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
*
72271430 TTTACCCTACAGGGGCTTTACGGTCTG
1 TTTACCCTACAGGGGCTTTACGGTCTC
72271457 TTTACC
1 TTTACC
72271463 TAATAGGGGT
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.33
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:72271546 original size:27 final size:27
Alignment explanation
Indices: 72271493--72272028 Score: 285
Period size: 27 Copynumber: 19.8 Consensus size: 27
72271483 TTTCATTCTA
* * * * *
72271493 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * *
72271520 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * *
72271547 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-T
* *
72271576 CAAGGGTATTTCT-GTAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTATAAAT
* * *
72271603 TAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
** * * *
72271630 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72271656 CCAGTGGTATTTTGGTAATTTTACAAAT
1 CAAG-GGTATTTTGGTAATTTTATAAAT
** * * *
72271684 TGAGGGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72271710 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTATAAAT
*
72271737 CTAGGGGTATTTTGGTAATTTTATAAAT
1 C-AAGGGTATTTTGGTAATTTTATAAAT
** * *
72271765 TGAGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* * * *
72271792 CAGGGGTATTTTAGAAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72271818 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTTGGTAATTTTA-TAAAT
* * *
72271845 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72271872 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* ***** * *
72271899 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
*** * *
72271926 CAAGGGTAAAATAGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* **** * *
72271953 CGAGGGTAAAACGGTAATTCTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *** *
72271980 CGAGGGTAAAATGGTAATTCTATAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAT
* *
72272007 CGAGGGTACTTTGGTAATTTTA
1 CAAGGGTATTTTGGTAATTTTA
72272029 CAATTTGAGG
Statistics
Matches: 413, Mismatches: 84, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
26 25 0.06
27 357 0.86
28 16 0.04
29 15 0.04
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAT
Found at i:72271665 original size:54 final size:53
Alignment explanation
Indices: 72271606--72271906 Score: 345
Period size: 54 Copynumber: 5.6 Consensus size: 53
72271596 TGTAAATTAG
* * *
72271606 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
* * *
72271659 GTGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 G-GGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
* * **
72271713 GTGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTATAAATTGA
1 G-GGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAA-CCA
* * * *
72271768 GGGTATTTTGGTAATTTTACAAA-CCAGGGGTATTTTAGAAATTTTACAAACTA
1 GGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTACAAACCA
** **
72271821 GGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACC-A
* **
72271875 GGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATCGAGGGTA
72271907 AAACAGTAAT
Statistics
Matches: 217, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
53 44 0.20
54 171 0.79
55 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.41
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAACCA
Found at i:72271700 original size:81 final size:79
Alignment explanation
Indices: 72271606--72271892 Score: 376
Period size: 81 Copynumber: 3.6 Consensus size: 79
72271596 TGTAAATTAG
** * * *
72271606 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAA-CCAGGGTATTTTGGTAATTTTACAAACTAG-GGTATTTTGG
72271671 TAATTTTACAAATTGA
64 TAATTTTACAAATTGA
* *
72271687 GGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGGTATTTTGGTAATTTTACAAACCAG-GGTATTTTGGTAATTTTACAAACTA-GGGTATTTTGG
*
72271752 TAATTTTATAAATTGA
64 TAATTTTACAAATTGA
* *
72271768 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGAAATTTTACAAACTAGGGTATTTTGGT
1 GGGTATTTTGGTAATTTTACAAACCA-GGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGT
** *
72271833 AATTTTACTGATCGA
65 AATTTTACAAATTGA
** *
72271848 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTT
1 GGGTATTTTGGTAATTTTACAAACC-AGGGTATTTTGGTAATTTT
72271893 GTAAATCGAG
Statistics
Matches: 183, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
80 65 0.36
81 116 0.63
82 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (79 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGTATTTTGGTAATTTTACAAACTAGGGTATTTTGGTA
ATTTTACAAATTGA
Found at i:72271959 original size:81 final size:81
Alignment explanation
Indices: 72271874--72272059 Score: 192
Period size: 81 Copynumber: 2.3 Consensus size: 81
72271864 TTGTAAACCA
*
72271874 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
*
72271939 GTAATTCTATAAATCG
66 GTAATTCTACAAATCG
***** * ** * *** *
72271955 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTACTTTG
1 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
* * *
72272020 GTAATTTTACAATTTG
66 GTAATTCTACAAATCG
* *
72272036 AGGGCATTTTAGTAATTTGGTAAA
1 AGGGTATTTTAGTAATTTTGTAAA
72272060 CTAAAGTATT
Statistics
Matches: 79, Mismatches: 26, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.37, C:0.08, G:0.22, T:0.34
Consensus pattern (81 bp):
AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
GTAATTCTACAAATCG
Found at i:72274083 original size:55 final size:53
Alignment explanation
Indices: 72273941--72274144 Score: 187
Period size: 54 Copynumber: 3.8 Consensus size: 53
72273931 TTTCCTTTTT
* * **
72273941 AACTTACCATTTCCATGTCTTGACATGGTCTTACGCGGTATCCTTGCCTTAT-G
1 AACTTA-CAATTCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
72273994 AACTCAC-ATTGGCATGCCTTGGCATGGTCATACATGGGATCTTTGCCTTATAG
1 AACTTACAATT-CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * *
72274047 TAGTTTATCAATTCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAG
1 -AACTTA-CAATTCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
72274102 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCC
1 AACTTA-CAATTCCATGCCTTGACATGGTCTTACATGGTATCC
72274145 ATAAACCCTA
Statistics
Matches: 116, Mismatches: 30, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
51 2 0.02
52 33 0.28
53 6 0.05
54 37 0.32
55 35 0.30
56 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTTACAATTCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:72277220 original size:21 final size:20
Alignment explanation
Indices: 72277188--72277228 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
72277178 ATATGTATGA
72277188 ATTTTGATGATTGATGATAG
1 ATTTTGATGATTGATGATAG
72277208 ATTTTGAATGATTGATGATAG
1 ATTTTG-ATGATTGATGATAG
72277229 TTAGACAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (20 bp):
ATTTTGATGATTGATGATAG
Found at i:72279080 original size:41 final size:43
Alignment explanation
Indices: 72278973--72279088 Score: 148
Period size: 41 Copynumber: 2.7 Consensus size: 43
72278963 GATTTCATGG
*
72278973 AAGACCATGTCTGGGACATTGGCATCGATATGAGATTACATGT
1 AAGACCATGTCTGGGACATTGGCATCGATATGAGATTACATAT
*
72279016 ATGACCATGTCTGGGACATTGGCATCG-TAT-ACGATT-CATAT
1 AAGACCATGTCTGGGACATTGGCATCGATATGA-GATTACATAT
* * * *
72279057 AAGACCCTGTCTAGGATAGTGGCATCGATATG
1 AAGACCATGTCTGGGACATTGGCATCGATATG
72279089 TGAAAACATA
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
41 27 0.43
42 10 0.16
43 26 0.41
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATTGGCATCGATATGAGATTACATAT
Found at i:72282939 original size:13 final size:13
Alignment explanation
Indices: 72282921--72282946 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
72282911 AGATTGTGTG
72282921 ATGATTGAATGTA
1 ATGATTGAATGTA
72282934 ATGATTGAATGTA
1 ATGATTGAATGTA
72282947 TGAGAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
ATGATTGAATGTA
Found at i:72284471 original size:83 final size:83
Alignment explanation
Indices: 72284323--72284489 Score: 273
Period size: 83 Copynumber: 2.0 Consensus size: 83
72284313 GAGAGAAAGA
* * * *
72284323 CCATTCCATAATGTTGGAAATGTGAGTGGTAGTAGAGGTGCAACACGAGATACTGCTGTAGGATC
1 CCATTCCATAATGTTGGAAATGTAACTGGTAGTAGAGGTGCAACACGAGATACTACTGTAAGATC
72284388 TGAAG-CTAGAGCACCTGC
66 TGAAGTC-AGAGCACCTGC
*
72284406 CCATTCCATAATGTTGGAAATGTAACTGGTAGTAGAGGTGCAACACGAGATACTATTGTAAGATC
1 CCATTCCATAATGTTGGAAATGTAACTGGTAGTAGAGGTGCAACACGAGATACTACTGTAAGATC
72284471 TGAAGTCAGAGCACCTGC
66 TGAAGTCAGAGCACCTGC
72284489 C
1 C
72284490 AGAACTTATG
Statistics
Matches: 78, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
83 77 0.99
84 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (83 bp):
CCATTCCATAATGTTGGAAATGTAACTGGTAGTAGAGGTGCAACACGAGATACTACTGTAAGATC
TGAAGTCAGAGCACCTGC
Found at i:72295494 original size:42 final size:42
Alignment explanation
Indices: 72295427--72295558 Score: 149
Period size: 42 Copynumber: 3.1 Consensus size: 42
72295417 TTAGGGTTAT
* *
72295427 TGAGATTCTGTATAAGACCATATTTGGAATATGGCATCGACA
1 TGAGATTTTGTATAAGACCATATTTGGAATATGGCATCGAAA
* * * *
72295469 TGTGATTTTGTATAAGACCACATTT-GAGACATGGCTTCGAAAA
1 TGAGATTTTGTATAAGACCATATTTGGA-ATATGGCATCG-AAA
* * * *
72295512 TGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTTTGTATAAGACCATATTTGGAATATGGCATCGAAA
72295554 TGAGA
1 TGAGA
72295559 CATCGTGTAA
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
41 2 0.03
42 38 0.52
43 32 0.44
44 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (42 bp):
TGAGATTTTGTATAAGACCATATTTGGAATATGGCATCGAAA
Found at i:72295530 original size:43 final size:42
Alignment explanation
Indices: 72295427--72295573 Score: 127
Period size: 42 Copynumber: 3.5 Consensus size: 42
72295417 TTAGGGTTAT
* * *
72295427 TGAGA-TTCTGTATAAGACCATATTTGGAATATGGCATCGACA
1 TGAGATTTC-GTATAAGACCACATTTGGAACATGGCATCGAAA
* * *
72295469 TGTGATTTTGTATAAGACCACATTT-GAGACATGGCTTCGAAAA
1 TGAGATTTCGTATAAGACCACATTTGGA-ACATGGCATCG-AAA
* * * * *
72295512 TGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTTCGTATAAGACCACATTTGGAACATGGCATCGAAA
** *
72295554 TGAGACATCGTGTAAGACCA
1 TGAGATTTCGTATAAGACCA
72295574 TAACTGGGCT
Statistics
Matches: 84, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
41 2 0.02
42 47 0.56
43 34 0.40
44 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (42 bp):
TGAGATTTCGTATAAGACCACATTTGGAACATGGCATCGAAA
Found at i:72295570 original size:42 final size:42
Alignment explanation
Indices: 72295427--72295633 Score: 157
Period size: 43 Copynumber: 4.9 Consensus size: 42
72295417 TTAGGGTTAT
* * *
72295427 TGAGA-TTCTGTATAAGACCATATTTGGAATATGGCATCGACA
1 TGAGACTTC-GTATAAGACCATATCTGGGATATGGCATCGATA
* * * * * * * * *
72295469 TGTGATTTTGTATAAGACCACATTTGAGACATGGCTTCGAAAA
1 TGAGACTTCGTATAAGACCATATCTGGGATATGGCATCG-ATA
*
72295512 TGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTTCGTATAAGACCATATCTGGGATATGGCATCGATA
* * * * * *
72295554 TGAGACATCGTGTAAGACCATAACTGGGCTATTAGCATCAATA
1 TGAGACTTCGTATAAGACCATATCTGGGATA-TGGCATCGATA
* * * *
72295597 TGTGA-TCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGACT-TCGTATAAGACCATATCTGGGATATGGCAT
72295634 TGGCATCTTA
Statistics
Matches: 131, Mismatches: 30, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
42 62 0.47
43 69 0.53
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (42 bp):
TGAGACTTCGTATAAGACCATATCTGGGATATGGCATCGATA
Found at i:72299970 original size:26 final size:26
Alignment explanation
Indices: 72299941--72300048 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 26
72299931 AGCATGGTTG
* *
72299941 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
72299967 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
72299994 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
*
72300021 CCA-AATCAGATAAATGTGGCATAGCCA
1 CCAGAA-CAGAT-AATGTGGCAGAGCCA
72300048 C
1 C
72300049 TAGGACGCTT
Statistics
Matches: 75, Mismatches: 3, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
26 15 0.20
27 58 0.77
28 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:72301510 original size:24 final size:24
Alignment explanation
Indices: 72301475--72301551 Score: 127
Period size: 24 Copynumber: 3.2 Consensus size: 24
72301465 CCAACACCGT
*
72301475 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
72301499 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* *
72301523 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
72301547 TCTCC
1 TCTCC
72301552 TGATAGCCTT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 50 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:72303771 original size:38 final size:38
Alignment explanation
Indices: 72303717--72303789 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
72303707 CATCAGGCTG
* *
72303717 TGATGGTTCCCGAGTGGAAATGGGATAAAATTACTTTT
1 TGATGGTTCCCGAGTGGAAATGGGAAAAAAATACTTTT
**
72303755 TGATGGTTCCTTAGTGGAAATGGGAAAAAAATACT
1 TGATGGTTCCCGAGTGGAAATGGGAAAAAAATACT
72303790 ATGGACTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.32
Consensus pattern (38 bp):
TGATGGTTCCCGAGTGGAAATGGGAAAAAAATACTTTT
Found at i:72313434 original size:80 final size:80
Alignment explanation
Indices: 72313350--72313498 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
72313340 TATGGTAACC
* * * *
72313350 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
72313414 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
72313430 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
72313495 CCGG
66 CCGG
72313499 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:72313440 original size:40 final size:38
Alignment explanation
Indices: 72313391--72313498 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
72313381 ATCACGATTT
*
72313391 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
72313431 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
72313471 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
72313499 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:72322438 original size:47 final size:48
Alignment explanation
Indices: 72322362--72322492 Score: 140
Period size: 47 Copynumber: 2.8 Consensus size: 48
72322352 CTCAATCGAT
* * * ***
72322362 AGTACCTATACCATAGCCCA-TAACCAAATCAAGGTAACTTATCT-TGG
1 AGTACCTATACCAT-GGCCAGTAGCCAAATCAAGGTAACTCATCTCCAA
* *
72322409 AGTACCTATACCATGGCCAGTAGCTAAATCAAGGTAACTCCTCTCCAA
1 AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCTCCAA
* * *
72322457 AATACCTATACCATGGCCTGTAGCCAACTCAAGGTA
1 AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTA
72322493 TCACTCGCAT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 4 0.06
47 34 0.49
48 32 0.46
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (48 bp):
AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCTCCAA
Found at i:72325139 original size:40 final size:40
Alignment explanation
Indices: 72325066--72325270 Score: 299
Period size: 40 Copynumber: 5.2 Consensus size: 40
72325056 AACCCAAGTA
* * **
72325066 CCTTCGGGATTTAG-CCGAATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
72325105 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72325145 CCTTCGGGACTTAGCCCGGATATAGTAACTCAG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTC-GCACAAATG
* *
72325185 CCTTCGGGACTTAG-CTGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72325224 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72325264 CCTTCGG
1 CCTTCGG
72325271 ATCTTAGTCC
Statistics
Matches: 150, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 49 0.33
40 100 0.67
41 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72325213 original size:79 final size:81
Alignment explanation
Indices: 72325066--72325270 Score: 321
Period size: 79 Copynumber: 2.6 Consensus size: 81
72325056 AACCCAAGTA
* * **
72325066 CCTTCGGGATTTAG-CCGAATATAACAACTC-GCACAAATGCCTTCGGGACTTAGCTCGGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCTCGGATATA
*
72325129 GTAACTCGCACAAATG
66 GTAACTCACACAAATG
72325145 CCTTCGGGACTTAGCCCGGATATAGTAACTCAG-ACAAATGCCTTCGGGACTTAGCT-GGATATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCTCGGATATA
72325208 GTAACTCACACAAATG
66 GTAACTCACACAAATG
*
72325224 CCTTCGGGACTTAGCCCGGATATAGTCACT-AGCACAAATGCCTTCGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCAGCACAAATGCCTTCGG
72325271 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 6, Indels: 6
0.91 0.05 0.05
Matches are distributed among these distances:
78 2 0.02
79 78 0.67
80 36 0.31
81 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (81 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCTCGGATATA
GTAACTCACACAAATG
Found at i:72332330 original size:40 final size:39
Alignment explanation
Indices: 72332259--72332384 Score: 180
Period size: 40 Copynumber: 3.2 Consensus size: 39
72332249 AACACAAGTA
* * **
72332259 CCTTCAGGATTTAGCCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
72332298 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCC-GGATATAGTAACTCGCACAAATG
* *
72332338 CCTTCGGGACTTAGTCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAG-CCGGATATAGTAACTCGCACAAATG
72332378 CCTTCGG
1 CCTTCGG
72332385 ATCTTAGTCC
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
39 14 0.18
40 63 0.80
41 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCGGATATAGTAACTCGCACAAATG
Found at i:72337492 original size:40 final size:40
Alignment explanation
Indices: 72337437--72337566 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
72337427 AACATTGGAA
72337437 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
72337477 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
72337516 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
72337557 CTATATCCGG
1 ATATATCCGG
72337567 TTAAATCCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:72345547 original size:40 final size:40
Alignment explanation
Indices: 72345492--72345701 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72345482 AACATTGGAA
72345492 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72345532 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72345572 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
72345612 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
72345651 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
72345692 CTATATCCGG
1 ATATATCCGG
72345702 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:72348705 original size:39 final size:39
Alignment explanation
Indices: 72348509--72348710 Score: 191
Period size: 39 Copynumber: 5.2 Consensus size: 39
72348499 TGAATGATAC
* * *
72348509 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGAATATAT
1 CCGGGCTAAG-ACCGAAGGCATTTGTGCTAGTGATTATAT
* *
72348549 CCGGGCTAAGTCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCGAAGGCATTTGTGCTAGTGATTATAT
* * *
72348588 CCGGGCTAAGA-CGAAGGCATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCGAAGGCATTTGTGCTAG-TGATTATAT
* **
72348626 CC-GGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCA-AT
1 CCGGGCTAAGA-CCGAAGGCATTTGTGCTAG-TGATTATAT
* * * *
72348664 CCGGGTTAAGACCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCGAAGGCATTTGTGCTAGTGATTATAT
72348703 CC-GGCTAA
1 CCGGGCTAA
72348711 ATTCCGAAGA
Statistics
Matches: 136, Mismatches: 19, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
37 9 0.07
38 48 0.35
39 69 0.51
40 10 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:72356763 original size:40 final size:40
Alignment explanation
Indices: 72356601--72356768 Score: 146
Period size: 40 Copynumber: 4.2 Consensus size: 40
72356591 TGAATGATAC
* * * * *
72356601 CCGGGCTATGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATCATAT
* *
72356641 CAGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TCATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATCATAT
* * * *
72356681 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGAT-ACCAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATCATAT
* * * *
72356721 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATCATAT
72356761 CC-GGCTAA
1 CCGGGCTAA
72356769 ATTCCGAAGA
Statistics
Matches: 101, Mismatches: 22, Indels: 11
0.75 0.16 0.08
Matches are distributed among these distances:
39 8 0.08
40 89 0.88
41 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATCATAT
Found at i:72362826 original size:169 final size:169
Alignment explanation
Indices: 72362547--72362888 Score: 630
Period size: 169 Copynumber: 2.0 Consensus size: 169
72362537 GCCACCGAGG
* *
72362547 ATATAGTCTTCCACCAGTGGTATGTAATGTCTTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
1 ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
*
72362612 TCAAGAGTACATGAAAGTTCGTCGAGAACTCGCATGGTATTCTCGAGCCAAAATTCAGCACGTTC
66 TCAAGAGTACACGAAAGTTCGTCGAGAACTCGCATGGTATTCTCGAGCCAAAATTCAGCACGTTC
72362677 CAGGTCATCACCAATCGTGGCCCTAAACTCTTCGACTCC
131 CAGGTCATCACCAATCGTGGCCCTAAACTCTTCGACTCC
72362716 ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
1 ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
*
72362781 TCAAGAGTACACGACAGTTCGTCGAGAACTCGCATGGTATTCTCGAGCCAAAATTCAGCACGTTC
66 TCAAGAGTACACGAAAGTTCGTCGAGAACTCGCATGGTATTCTCGAGCCAAAATTCAGCACGTTC
* *
72362846 TAGGTCATCATCAATCGTGGCCCTAAACTCTTCGACTCC
131 CAGGTCATCACCAATCGTGGCCCTAAACTCTTCGACTCC
72362885 ATAT
1 ATAT
72362889 TTCCTAAGTT
Statistics
Matches: 167, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
169 167 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (169 bp):
ATATAGTCTTCCACCAGTGGTATGCAATGTCCTTCAATAGTGACACCGCTCATTTCAAGCTTTCC
TCAAGAGTACACGAAAGTTCGTCGAGAACTCGCATGGTATTCTCGAGCCAAAATTCAGCACGTTC
CAGGTCATCACCAATCGTGGCCCTAAACTCTTCGACTCC
Found at i:72363601 original size:12 final size:12
Alignment explanation
Indices: 72363584--72363611 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
72363574 ATGTTAAGTA
72363584 TTTTATTTGAAG
1 TTTTATTTGAAG
72363596 TTTTATTTGAAG
1 TTTTATTTGAAG
72363608 TTTT
1 TTTT
72363612 GAGGTCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.14, T:0.64
Consensus pattern (12 bp):
TTTTATTTGAAG
Found at i:72370157 original size:40 final size:39
Alignment explanation
Indices: 72369965--72370172 Score: 184
Period size: 40 Copynumber: 5.2 Consensus size: 39
72369955 CAATTGAATG
* * ** ** *
72369965 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * *
72370005 ATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
* * *
72370045 ACATCTGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * * *
72370085 AAATCCAGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
72370125 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
72370165 ATATCCGG
1 ATATCCGG
72370173 TCGTATTCCG
Statistics
Matches: 137, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
39 4 0.03
40 128 0.93
41 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:72376121 original size:48 final size:46
Alignment explanation
Indices: 72375994--72376175 Score: 193
Period size: 48 Copynumber: 3.8 Consensus size: 46
72375984 ACCATGGTTA
* * *
72375994 ATGAGATCTTGTGTAAGACCATGTCTGGGACATGGCATCAGCATCCGAG
1 ATGAGA-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT--GAT
* * *
72376043 ATGAGAGCCAGTGTAATACCATGTCTGGGACATGGCATTGGCGATGAT
1 ATGAGA-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATGAT
*
72376091 ATGTGTACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACTGAT
1 ATGAG-ACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-TGAT
* * * *
72376139 ATGAGACTTCGTATAAGACCATATCTGGGATATGGCA
1 ATGAGAC-TAGTGTAAGACCATGTCTGGGACATGGCA
72376176 CCAACATGTG
Statistics
Matches: 113, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
47 3 0.03
48 71 0.63
49 37 0.33
50 2 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (46 bp):
ATGAGACTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATGAT
Found at i:72379023 original size:2 final size:2
Alignment explanation
Indices: 72379016--72379057 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
72379006 TGTATGACTG
72379016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72379058 GTATTTAAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:72381139 original size:27 final size:26
Alignment explanation
Indices: 72381101--72381215 Score: 108
Period size: 27 Copynumber: 4.3 Consensus size: 26
72381091 AGCATGGCTG
*
72381101 CCAGAACAGATATTA-GGACAGAGTCA
1 CCAGAACAGATATTATGG-CAGAGCCA
*
72381127 CCAGATATAGATATTATGGCAGAGCCA
1 CCAGA-ACAGATATTATGGCAGAGCCA
* * *
72381154 TCAGAACAGATATTCGTGGCATAGCCA
1 CCAGAACAGATATT-ATGGCAGAGCCA
*
72381181 CCAGAAACAGATATT-TGCGGCATAGCCA
1 CCAG-AACAGATATTAT--GGCAGAGCCA
72381209 CCAGAAC
1 CCAGAAC
72381216 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 14 0.18
27 36 0.47
28 26 0.34
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTATGGCAGAGCCA
Found at i:72381202 original size:28 final size:28
Alignment explanation
Indices: 72381144--72381214 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
72381134 TAGATATTAT
* * *
72381144 GGCAGAGCCATCAG-AACAGATATTCGT
1 GGCATAGCCACCAGAAACAGATATTCGC
*
72381171 GGCATAGCCACCAGAAACAGATATTTGC
1 GGCATAGCCACCAGAAACAGATATTCGC
72381199 GGCATAGCCACCAGAA
1 GGCATAGCCACCAGAA
72381215 CGCTTCCTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 12 0.31
28 27 0.69
ACGTcount: A:0.35, C:0.25, G:0.24, T:0.15
Consensus pattern (28 bp):
GGCATAGCCACCAGAAACAGATATTCGC
Found at i:72385041 original size:28 final size:28
Alignment explanation
Indices: 72384998--72385053 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
72384988 TTTAATTAAA
*
72384998 AACCATCTGCGTTGTCCACATGGCCACC
1 AACCATCTGCGCTGTCCACATGGCCACC
* **
72385026 AACCATCTGTGCTGTCCATGTGGCCACC
1 AACCATCTGCGCTGTCCACATGGCCACC
72385054 CTGAATCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.20, C:0.38, G:0.20, T:0.23
Consensus pattern (28 bp):
AACCATCTGCGCTGTCCACATGGCCACC
Found at i:72385453 original size:27 final size:26
Alignment explanation
Indices: 72385408--72385519 Score: 116
Period size: 27 Copynumber: 4.2 Consensus size: 26
72385398 TGGCTGCCAG
** *
72385408 AACAGATATTGTGATAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAA
* *
72385434 ATACAGATATTGTGGCAGAGCCACTAG
1 A-ACAGATATTGTGGCAGAGCCACCAA
*
72385461 AACAGATATTCGTGGCATAGCCACCAAA
1 AACAGATATT-GTGGCAGAGCCACC-AA
* *
72385489 AACAAATATTTGTGGCATAGCCACCAA
1 AACAGATA-TTGTGGCAGAGCCACCAA
72385516 AACA
1 AACA
72385520 CTTCCTTCAT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 10 0.14
27 39 0.53
28 22 0.30
29 2 0.03
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.21
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAA
Found at i:72385503 original size:28 final size:28
Alignment explanation
Indices: 72385428--72385517 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
72385418 GTGATAGAGT
* *
72385428 CACCAAATACAGATA-TTGTGGCAGAGC
1 CACCAAAAACAGATATTTGTGGCATAGC
* * *
72385455 CA-CTAGAACAGATATTCGTGGCATAGC
1 CACCAAAAACAGATATTTGTGGCATAGC
*
72385482 CACCAAAAACAAATATTTGTGGCATAGC
1 CACCAAAAACAGATATTTGTGGCATAGC
72385510 CACCAAAA
1 CACCAAAA
72385518 CACTTCCTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 9 0.17
27 14 0.27
28 29 0.56
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (28 bp):
CACCAAAAACAGATATTTGTGGCATAGC
Found at i:72385511 original size:55 final size:53
Alignment explanation
Indices: 72385406--72385512 Score: 133
Period size: 54 Copynumber: 2.0 Consensus size: 53
72385396 CATGGCTGCC
* * * *
72385406 AGAACAGATATTGTGATAGAGTCACCAAATACAGATATTGTGGCAGAGCCACT
1 AGAACAGATATTGTGACAGAGCCACCAAAAACAAATATTGTGGCAGAGCCACT
* * *
72385459 AGAACAGATATTCGTGGCATAGCCACCAAAAACAAATATTTGTGGCATAGCCAC
1 AGAACAGATATT-GTGACAGAGCCACCAAAAACAAATA-TTGTGGCAGAGCCAC
72385513 CAAAACACTT
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
53 12 0.27
54 19 0.42
55 14 0.31
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (53 bp):
AGAACAGATATTGTGACAGAGCCACCAAAAACAAATATTGTGGCAGAGCCACT
Found at i:72387631 original size:3 final size:3
Alignment explanation
Indices: 72387623--72387657 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
72387613 AAACATACGA
* *
72387623 AAT AAT AAT AAC AGT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
72387658 CATCCAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:72394470 original size:15 final size:15
Alignment explanation
Indices: 72394429--72394491 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 15
72394419 GAAAACCAGA
*
72394429 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
* * *
72394444 ACAGAGGAATCCAAG
1 ATAAAGAAATCCAAG
*
72394459 ATAAAGATATCCAAG
1 ATAAAGAAATCCAAG
* *
72394474 GTACAGAAATCCAAG
1 ATAAAGAAATCCAAG
72394489 ATA
1 ATA
72394492 CCATATCATA
Statistics
Matches: 36, Mismatches: 12, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 36 1.00
ACGTcount: A:0.51, C:0.16, G:0.17, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:72396126 original size:40 final size:40
Alignment explanation
Indices: 72396033--72396246 Score: 269
Period size: 40 Copynumber: 5.4 Consensus size: 40
72396023 AAGCCAAGTA
* * *
72396033 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
72396071 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
72396111 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
72396151 CCTTCGGGACTTAG-CCGGAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGG-ATATAGTAACTCGCACAAATG
*
72396191 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
72396232 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
72396247 TCGGTTATCA
Statistics
Matches: 157, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 12 0.08
39 21 0.13
40 96 0.61
41 24 0.15
42 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:72400956 original size:40 final size:40
Alignment explanation
Indices: 72400892--72401077 Score: 190
Period size: 38 Copynumber: 4.8 Consensus size: 40
72400882 GCTACTCGTT
* * * ***
72400892 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAACCCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
72400932 CAAATGCCTTCGGGACTTAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* *
72400972 C-AATGCCTTCGGG-CTTAGCCCGGATAT--CATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
* **
72401008 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
*
72401046 C-ATTGCCTTCGGG-CTTAGCCCGGATATCACAA
1 CAAATGCCTTCGGGACTTAGCCCGGATATCACAA
72401078 TTCGCACATT
Statistics
Matches: 131, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
36 34 0.26
38 52 0.40
39 12 0.09
40 33 0.25
ACGTcount: A:0.24, C:0.32, G:0.22, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATCACAACCCGCA
Found at i:72401038 original size:74 final size:75
Alignment explanation
Indices: 72400936--72401074 Score: 244
Period size: 74 Copynumber: 1.9 Consensus size: 75
72400926 CCCGCACAAA
72400936 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATGCCTTCGGGCTTAGCCCGGATATCA
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATGCCTTCGGGCTTAGCCCGGATATCA
72401001 TCTCGCACAT
66 TCTCGCACAT
* * *
72401011 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACATTGCCTTCGGGCTTAGCCCGGATATCA
1 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATGCCTTCGGGCTTAGCCCGGATATCA
72401075 CAATTCGCAC
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
74 51 0.84
75 10 0.16
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (75 bp):
TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAATGCCTTCGGGCTTAGCCCGGATATCA
TCTCGCACAT
Found at i:72401054 original size:38 final size:38
Alignment explanation
Indices: 72400936--72401087 Score: 238
Period size: 38 Copynumber: 4.0 Consensus size: 38
72400926 CCCGCACAAA
* * *
72400936 TGCCTTCGGGACTTAACCCGGATATCACAACTCGCACAA
1 TGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCACAT
72400975 TGCCTTCGGGCTTAGCCCGGATAT--C-ATCTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAAT-TCGCACAT
72401011 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
72401049 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
1 TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
72401087 T
1 T
72401088 CATACACATC
Statistics
Matches: 106, Mismatches: 3, Indels: 9
0.90 0.03 0.08
Matches are distributed among these distances:
35 1 0.01
36 32 0.30
38 61 0.58
39 12 0.11
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.26
Consensus pattern (38 bp):
TGCCTTCGGGCTTAGCCCGGATATCACAATTCGCACAT
Found at i:72405961 original size:34 final size:35
Alignment explanation
Indices: 72405917--72405985 Score: 131
Period size: 34 Copynumber: 2.0 Consensus size: 35
72405907 TATCCGGGCT
72405917 AAGACCCGAAGGCATTCGTGCGAGTTGATATATCC
1 AAGACCCGAAGGCATTCGTGCGAGTTGATATATCC
72405952 AAGA-CCGAAGGCATTCGTGCGAGTTGATATATCC
1 AAGACCCGAAGGCATTCGTGCGAGTTGATATATCC
72405986 GGGCTAAGAC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 30 0.88
35 4 0.12
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (35 bp):
AAGACCCGAAGGCATTCGTGCGAGTTGATATATCC
Found at i:72414047 original size:40 final size:40
Alignment explanation
Indices: 72413992--72414201 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
72413982 AACATTGGAA
72413992 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72414032 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
72414072 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
72414112 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
72414151 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
72414192 CTATATCCGG
1 ATATATCCGG
72414202 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:72419247 original size:40 final size:40
Alignment explanation
Indices: 72419195--72419422 Score: 282
Period size: 40 Copynumber: 5.7 Consensus size: 40
72419185 GCCACTAGCT
* *
72419195 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72419235 CAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
72419274 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
72419314 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
72419354 CGAATGCCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
72419394 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
72419423 CATCCGAACA
Statistics
Matches: 168, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 39 0.23
40 128 0.76
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72419293 original size:79 final size:80
Alignment explanation
Indices: 72419195--72419379 Score: 282
Period size: 79 Copynumber: 2.3 Consensus size: 80
72419185 GCCACTAGCT
* ** * *
72419195 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
72419260 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
72419274 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
72419339 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
72419354 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72419380 ATTAGCCACT
Statistics
Matches: 96, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
79 59 0.61
80 37 0.39
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:72419407 original size:80 final size:77
Alignment explanation
Indices: 72419195--72419419 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 77
72419185 GCCACTAGCT
* *
72419195 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTA-ACTTGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-AAT--TAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
72419259 GTATAATAACTCGCA
63 GTATAATAACTCGCA
* *
72419274 CAAATGCCTTCGGGACTTAGCCCGGATATAATAG-CTCGCACAAACGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGA-AT--TAGACTAGCACAAATGCCTTCGGGACTTAGCCCG
* *
72419338 GATATAGTAGCTCGCA
63 G-TATAATAACTCGCA
* *
72419354 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAG--ACTAGCACAAATGCCT-TCGGGACTTAGCCCG
72419418 GT
63 GT
72419420 TATCATCCGA
Statistics
Matches: 128, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
77 3 0.02
79 63 0.49
80 62 0.48
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (77 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGACTAGCACAAATGCCTTCGGGACTTAGCCCGGTA
TAATAACTCGCA
Found at i:72427289 original size:40 final size:40
Alignment explanation
Indices: 72427237--72427463 Score: 273
Period size: 40 Copynumber: 5.7 Consensus size: 40
72427227 GCCACTAGCT
* *
72427237 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
72427277 CAAATGCCTTC-GGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
72427315 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
72427355 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * ** * *
72427395 CGAATGCCTTCGGGACTTAGCCCGG-AATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
72427435 CAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 CAAATGCCT-TCGGGACTTAGCCCGGTTAT
72427464 CATCCGAACA
Statistics
Matches: 166, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 22 0.13
39 29 0.17
40 114 0.69
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:72427356 original size:78 final size:80
Alignment explanation
Indices: 72427237--72427420 Score: 273
Period size: 78 Copynumber: 2.3 Consensus size: 80
72427227 GCCACTAGCT
* ** * *
72427237 CAAATGCCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATGCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
72427301 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
72427315 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
72427380 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
72427395 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
72427421 ATTAGCCACT
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
78 45 0.47
79 13 0.14
80 37 0.39
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:72435073 original size:22 final size:22
Alignment explanation
Indices: 72435034--72435076 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
72435024 ATCACTCTTC
* *
72435034 CTCTCCTTTTATTTTTCTTTTT
1 CTCTCCATTTATTATTCTTTTT
*
72435056 CTCTCCATTTGTTATTCTTTT
1 CTCTCCATTTATTATTCTTTT
72435077 CTTCTTCTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.23, G:0.02, T:0.67
Consensus pattern (22 bp):
CTCTCCATTTATTATTCTTTTT
Found at i:72435897 original size:16 final size:15
Alignment explanation
Indices: 72435871--72435900 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
72435861 ACTAGATTGG
72435871 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
72435886 CAAAATGCCGAAAAG
1 CAAAA-GCCGAAAAG
72435901 TCGATATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.23, G:0.20, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:72436355 original size:27 final size:27
Alignment explanation
Indices: 72436315--72436426 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
72436305 AGGAAGCATC
*
72436315 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
72436342 CTGGTGGCTCTGCCACATATT-TCT-ATT
1 CTGGTGGCTCTGCCACA-ATTATCTGA-T
* *
72436369 CTGATGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
72436397 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
72436423 CTGG
1 CTGG
72436427 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
26 9 0.12
27 46 0.63
28 17 0.23
29 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:72436425 original size:54 final size:54
Alignment explanation
Indices: 72436319--72436425 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
72436309 AGCATCCTGG
* *
72436319 TGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTATTCTGA
1 TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATTCTGA
* * * *
72436373 TGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 TGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATTCTG
72436426 GCAGCCATGC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 28 0.61
55 18 0.39
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (54 bp):
TGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATTCTGA
Found at i:72437543 original size:49 final size:49
Alignment explanation
Indices: 72437339--72437608 Score: 344
Period size: 49 Copynumber: 5.4 Consensus size: 49
72437329 GGGGTGTTAC
*
72437339 AGCCTGCACTTAGTACTACACATGTGACCAATTATCTGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGT
* * * ** *
72437388 AGCCTACACTTAGTACTACACACATGAG-CTAACCATCTGATACACGTAGT
1 AGCCTGCACTTAGTACT--ACACATGCGACCAATTATCTGGTACACGTAGT
* * * * * * *
72437438 AGCCCGCACTTAGTACTACACACGTGATCAAAGTTATCAGGTACGCATAGT
1 AGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCTGGTACACGTAGT
* *
72437489 AGCCTGTACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGT
1 AGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGT
*
72437538 AGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACATGTAGT
1 AGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGT
72437587 AGCCTGCACTTAGTACTACACA
1 AGCCTGCACTTAGTACTACACA
72437609 CGTCACCTCA
Statistics
Matches: 188, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
48 7 0.04
49 99 0.53
50 39 0.21
51 43 0.23
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
AGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGT
Found at i:72437881 original size:27 final size:27
Alignment explanation
Indices: 72437841--72437894 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
72437831 AGGTACAACC
* *
72437841 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
72437868 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
72437895 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:72441590 original size:27 final size:27
Alignment explanation
Indices: 72441528--72441595 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
72441518 AATACTTTAG
* ** *
72441528 TTTACCAAATTACTGAAATACCCTCGA
1 TTTACAAAATTACCAAAATACCCCCGA
* **
72441555 CTTGTAAAATTACCAAAATACCCCCGA
1 TTTACAAAATTACCAAAATACCCCCGA
72441582 TTTACAAAATTACC
1 TTTACAAAATTACC
72441596 GTTTTACCCT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.26, G:0.06, T:0.28
Consensus pattern (27 bp):
TTTACAAAATTACCAAAATACCCCCGA
Found at i:72441670 original size:27 final size:27
Alignment explanation
Indices: 72441618--72441754 Score: 159
Period size: 27 Copynumber: 5.1 Consensus size: 27
72441608 ATTTACAAAG
72441618 TTATTGAAATACCC-TGTAGGGTAGAA
1 TTATTGAAATACCCTTGTAGGGTAGAA
*
72441644 TTATTGAAATACCCATGTAGGGTAGAA
1 TTATTGAAATACCCTTGTAGGGTAGAA
***
72441671 TTACCAAAATACCCTTGTAGGGTAGAA
1 TTATTGAAATACCCTTGTAGGGTAGAA
* * * *
72441698 ATATCGAAATACCCCTGTAGGGTAAAA
1 TTATTGAAATACCCTTGTAGGGTAGAA
* * * *
72441725 TTACTGAGATACCCTTGTGGGGTAAAA
1 TTATTGAAATACCCTTGTAGGGTAGAA
72441752 TTA
1 TTA
72441755 CCATTTTGCC
Statistics
Matches: 95, Mismatches: 15, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 14 0.15
27 81 0.85
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (27 bp):
TTATTGAAATACCCTTGTAGGGTAGAA
Found at i:72441996 original size:28 final size:27
Alignment explanation
Indices: 72441957--72442072 Score: 146
Period size: 27 Copynumber: 4.3 Consensus size: 27
72441947 ATGGAGGATG
*
72441957 TGTTCTGGTGGCTATGCCACAAATTTC
1 TGTTCTGGTGGCTATGCCACAAATATC
72441984 TGTTACTGGTGGCTATGCCACAAATATC
1 TGTT-CTGGTGGCTATGCCACAAATATC
* *
72442012 TGTTCTGGTGGCTCTGCCAC-AGTATC
1 TGTTCTGGTGGCTATGCCACAAATATC
* * *
72442038 TGTATCTGGTGACTCTGTCAC-AATATC
1 TGT-TCTGGTGGCTATGCCACAAATATC
72442065 TGTTCTGG
1 TGTTCTGG
72442073 CAGCCATGCT
Statistics
Matches: 81, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 13 0.16
27 42 0.52
28 26 0.32
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.36
Consensus pattern (27 bp):
TGTTCTGGTGGCTATGCCACAAATATC
Found at i:72442230 original size:12 final size:12
Alignment explanation
Indices: 72442213--72442244 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
72442203 TTCTGTCACA
72442213 TGATTCTAATTT
1 TGATTCTAATTT
*
72442225 TGATTCTTATTT
1 TGATTCTAATTT
72442237 TGATTCTA
1 TGATTCTA
72442245 GTTCTGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.22, C:0.09, G:0.09, T:0.59
Consensus pattern (12 bp):
TGATTCTAATTT
Found at i:72444270 original size:27 final size:27
Alignment explanation
Indices: 72444240--72444303 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
72444230 ATTACTGAAA
72444240 TACCCTCGACTTGTA-A-AATTACCAATG
1 TACCCTCGA-TT-TACAGAATTACCAATG
* * *
72444267 TACCCCCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCAATG
72444294 TACCCTCGAT
1 TACCCTCGAT
72444304 ATAAAAAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 3 0.10
27 26 0.84
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCAATG
Found at i:72444313 original size:27 final size:27
Alignment explanation
Indices: 72444254--72444314 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
72444244 CTCGACTTGT
* *
72444254 AAAATTACCAATGTACCCCCGATTTAC
1 AAAATTACCAATGTACCCCCGATATAA
* * * *
72444281 AGAATTACCATTTTACCCTCGATATAA
1 AAAATTACCAATGTACCCCCGATATAA
72444308 AAAATTA
1 AAAATTA
72444315 TTGAAATACC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.23, G:0.07, T:0.30
Consensus pattern (27 bp):
AAAATTACCAATGTACCCCCGATATAA
Found at i:72444402 original size:54 final size:54
Alignment explanation
Indices: 72444310--72444446 Score: 206
Period size: 54 Copynumber: 2.6 Consensus size: 54
72444300 CGATATAAAA
*
72444310 AATTATTGAAATACCC-TGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
72444363 AATTATTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTATTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
* ** * *
72444417 ATTTACCGAGATACCCTTGTGGGGTA-AAAT
1 AATTATTGAAATACCCTTGTAGGGTAGAAAT
72444447 TACCATTTTG
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 20 0.26
54 57 0.74
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (54 bp):
AATTATTGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
Found at i:72444450 original size:27 final size:27
Alignment explanation
Indices: 72444310--72444449 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
72444300 CGATATAAAA
*
72444310 AATTATTGAAATA-CCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
72444336 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
72444363 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
72444390 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * * *
72444417 ATTTACCGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
72444444 AATTAC
1 AATTAC
72444450 CATTTTGCCC
Statistics
Matches: 99, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 12 0.12
27 87 0.88
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.29
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:72444686 original size:28 final size:28
Alignment explanation
Indices: 72444653--72444742 Score: 139
Period size: 28 Copynumber: 3.3 Consensus size: 28
72444643 GGAGGAAGTG
*
72444653 TTCTGGTGGTTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
72444681 TTCTGGTGGCTATGCCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
72444708 TTCTGGTGGCTCTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
72444735 ATCTGGTG
1 TTCTGGTG
72444743 ACTCCATCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
26 8 0.14
27 24 0.41
28 26 0.45
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Found at i:72444723 original size:27 final size:27
Alignment explanation
Indices: 72444651--72444742 Score: 141
Period size: 27 Copynumber: 3.4 Consensus size: 27
72444641 ATGGAGGAAG
*
72444651 TGTTCTGGTGGTTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
72444678 TGTTTCTGGTGGCTATGCCACAAATATC
1 TG-TTCTGGTGGCTATGCCACAAATATC
*
72444706 TGTTCTGGTGGCTCTGCCAC-AATATC
1 TGTTCTGGTGGCTATGCCACAAATATC
72444732 TGTATCTGGTG
1 TGT-TCTGGTG
72444743 ACTCCATCAC
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
26 9 0.15
27 26 0.43
28 26 0.43
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (27 bp):
TGTTCTGGTGGCTATGCCACAAATATC
Found at i:72444753 original size:27 final size:26
Alignment explanation
Indices: 72444667--72444766 Score: 83
Period size: 27 Copynumber: 3.7 Consensus size: 26
72444657 GGTGGTTATG
* ***
72444667 CCACAAATATCTGTTTCTGGTGGCTATG
1 CCAC-AATATCTG-TTCTGGTGACTCCA
* **
72444695 CCACAAATATCTGTTCTGGTGGCTCTG
1 CCAC-AATATCTGTTCTGGTGACTCCA
72444722 CCACAATATCTGTATCTGGTGACTCCA
1 CCACAATATCTGT-TCTGGTGACTCCA
* *
72444749 TCACAATATTTGTTCTGG
1 CCACAATATCTGTTCTGG
72444767 CAGCCATGAT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 14 0.22
27 38 0.58
28 13 0.20
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (26 bp):
CCACAATATCTGTTCTGGTGACTCCA
Found at i:72444754 original size:54 final size:53
Alignment explanation
Indices: 72444651--72444766 Score: 137
Period size: 54 Copynumber: 2.2 Consensus size: 53
72444641 ATGGAGGAAG
* * *
72444651 TGTTCTGGTGGTTATGCCACAAATATCTGTTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGACTAT-CCAC-AATATC
* *
72444706 TGTTCTGGTGGCTCTGCCAC-AATATCTGTATCTGGTGACTCCAT-CACAATATT
1 TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGACT--ATCCACAATATC
72444759 TGTTCTGG
1 TGTTCTGG
72444767 CAGCCATGAT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
53 13 0.24
54 21 0.39
55 18 0.33
56 2 0.04
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (53 bp):
TGTTCTGGTGGCTATGCCACAAATATCTGTATCTGGTGACTATCCACAATATC
Found at i:72453121 original size:48 final size:48
Alignment explanation
Indices: 72453066--72453396 Score: 306
Period size: 48 Copynumber: 6.9 Consensus size: 48
72453056 GGTGGATTGT
* * *
72453066 CGATGCCATGTTCTAAACATGGTCTTACACTAGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
* * ** ** *
72453114 CGATGCCATGTCCCAAACATGATCTTACACTACCTCTTATAAGGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
** * * *
72453162 CGATGCCATGTCCCGGACATGGTCTTACACTAGCGCACATATCAATGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
* *
72453210 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGG-
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGA-GGC
* * * * * * *
72453258 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAAC-ATCGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGA-GGC
** * * * * *
72453306 TAATGCCATGTTCTAAACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
* * * * *
72453354 TGAAGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATC
72453397 ACTCAAATGT
Statistics
Matches: 232, Mismatches: 48, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
47 3 0.01
48 228 0.98
49 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCGAGGC
Found at i:72453230 original size:96 final size:95
Alignment explanation
Indices: 72453066--72453397 Score: 337
Period size: 96 Copynumber: 3.5 Consensus size: 95
72453056 GGTGGATTGT
* * * * * *
72453066 CGATGCCATGTTCTAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAAA
*
72453131 CATGATCTTACACTACCTCTTATAAGGTGGC
66 CATGGTCTTACACTACCTCTTATAA-GTGGC
* *
72453162 CGATGCCATGTCCCGGACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAAA
* *
72453227 CATGGTCTTACACTAGCGCACATATCAA-TGG-
66 CATGGTCTTACACTA-C-CTCTTAT-AAGTGGC
* * * * * ** * *
72453258 CAATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAAC-ATCGCTAATGCCATGTTCTAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAT-GCCGATGCCATGTCCCAA
** * *
72453322 ACATGGTCTTACACTGGCTCTCATATCGTGGC
65 ACATGGTCTTACACTACCTCTTATA-AGTGGC
* * * *
72453354 TGAAGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
72453398 CTCAAATGTC
Statistics
Matches: 193, Mismatches: 35, Indels: 15
0.79 0.14 0.06
Matches are distributed among these distances:
93 1 0.01
94 4 0.02
95 5 0.03
96 172 0.89
97 4 0.02
98 5 0.03
99 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAATGCCGATGCCATGTCCCAAA
CATGGTCTTACACTACCTCTTATAAGTGGC
Found at i:72453326 original size:144 final size:144
Alignment explanation
Indices: 72453066--72453397 Score: 362
Period size: 144 Copynumber: 2.3 Consensus size: 144
72453056 GGTGGATTGT
* * * * * *
72453066 CGATGCCATGTTCTAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCCAAA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCATGTCCCAAA
* * ** * * **
72453131 CATGATCTTACACTACCTCTTATAAGGTGGCCGATGCCATGTCCCGGACATGGTCTTACACTAGC
66 CATGATCTTACACTACCTCTCACAACATCGCCAATGCCATGTCCCAAACATGGTCTTACACTAGC
72453196 GCACATATCAAT-GC
131 GCACATATC-ATGGC
* *
72453210 CGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGG-CAATGCCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAA-GGCCAATGCCATGTCCCAA
* ** * * * *
72453274 ACATGGTCTTACACTGGCTCTCACAACATCGCTAATGCCATGTTCTAAACATGGTCTTACACTGG
65 ACATGATCTTACACTACCTCTCACAACATCGCCAATGCCATGTCCCAAACATGGTCTTACACTAG
* * *
72453339 CTCTCATATCGTGGC
130 CGCACATATCATGGC
* * * *
72453354 TGAAGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCA
72453398 CTCAAATGTC
Statistics
Matches: 156, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
143 1 0.01
144 153 0.98
145 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.26
Consensus pattern (144 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAGGCCAATGCCATGTCCCAAA
CATGATCTTACACTACCTCTCACAACATCGCCAATGCCATGTCCCAAACATGGTCTTACACTAGC
GCACATATCATGGC
Found at i:72460943 original size:48 final size:47
Alignment explanation
Indices: 72460749--72461125 Score: 294
Period size: 48 Copynumber: 7.9 Consensus size: 47
72460739 ACATGTCGAG
* * * ****
72460749 GCCGATGCCATGTCCCATACATGGCCTTACACTAGCTCTCGTCTCTTT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-AAGAT
* * * *
72460797 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCAAAAGGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGAT
* * * * *
72460844 GCCTATGCCATGTCCTAG-CATGGTCTTACACTAACGCACATATCA-AT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA--AGAT
* * * *
72460891 GCCGATGCTATTTCCCAGACATGGTCTTACACTAGTTCTCATAAGGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGAT
* * * * *
72460938 GGCCGATGCCACGTCCCAAACATGGTCTTAAACTGGCTCTCATAATAT
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGAT
* * * *
72460986 GGTCGATGCCATGTCCCAGACATGGTCTTACATTAGCGCACGTATCAA-A-
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--AT-AAGAT
* * * * *
72461035 GTCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCACAACAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGAT
* * * * *
72461082 CGTCGATGCCATGTTCCAAACATGGTCTTACATTGGCTCTCATA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATA
72461126 TCGTGGCCAA
Statistics
Matches: 262, Mismatches: 56, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
45 2 0.01
46 22 0.08
47 32 0.12
48 201 0.77
50 3 0.01
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAGAT
Found at i:72461061 original size:144 final size:142
Alignment explanation
Indices: 72460749--72461125 Score: 400
Period size: 144 Copynumber: 2.6 Consensus size: 142
72460739 ACATGTCGAG
* * * * * * * *
72460749 GCCGATGCCATGTCCCATACATGGCCTTACACTAGCTCTCGTC-TCTTTGCTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTC-ACAACATCGCCGATGCCATGTCCC
* * * * *
72460813 AGACATGGTCTTACACTAGCTTTCA-AAAGGTGCCTATGCCATGTCCTAGCATGGTCTTACACTA
65 AAACATGGTCTTACACTGGCTCTCATAAAGGT-CCGATGCCATGTCCCAGCATGGTCTTACACTA
*
72460877 ACGCACATATCAAT
129 ACGCACATATCAAA
* * * * * ** * *
72460891 GCCGATGCTATTTCCCAGACATGGTCTTACACTAGTTCTCATAAGGTGGCCGATGCCACGTCCCA
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCACAACATCGCCGATGCCATGTCCCA
* *
72460956 AACATGGTCTTAAACTGGCTCTCATAATATGGT-CGATGCCATGTCCCAGACATGGTCTTACATT
66 AACATGGTCTTACACTGGCTCTCATAA-A-GGTCCGATGCCATGTCCCAG-CATGGTCTTACACT
* *
72461020 AGCGCACGTATCAAA
128 AACGCACATATCAAA
* * * *
72461035 GTCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCACAACATCGTCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCACAACATCGCCGATGCCATGTCCCA
*
72461100 AACATGGTCTTACATTGGCTCTCATA
66 AACATGGTCTTACACTGGCTCTCATA
72461126 TCGTGGCCAA
Statistics
Matches: 192, Mismatches: 38, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
142 71 0.37
143 16 0.08
144 102 0.53
145 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (142 bp):
GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCACAACATCGCCGATGCCATGTCCCA
AACATGGTCTTACACTGGCTCTCATAAAGGTCCGATGCCATGTCCCAGCATGGTCTTACACTAAC
GCACATATCAAA
Found at i:72461144 original size:96 final size:96
Alignment explanation
Indices: 72460943--72461166 Score: 243
Period size: 96 Copynumber: 2.3 Consensus size: 96
72460933 AAGGTGGCCG
* * * * * * *
72460943 ATGCCACGTCCCAAACATGGTCTTAAACTGGCTCTCATAATATGGTCGATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATCGTCGATGCCATGTCCCAAACA
* * *
72461008 TGGTCTTACATTAGCGCACGTATCAAAGTCG
66 TGGTCTTACATTAGCGCACATATCAAAGCCA
* *
72461039 ATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCACAACATCGTCGATGCCATGTTCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATCGTCGATGCCATGTCCCAAACA
* * * ***
72461104 TGGTCTTACATTGGCTCTCATATCGTGGCCA
66 TGGTCTTACATTAGCGCACATATCAAAGCCA
* * *
72461135 ACT-CTATGTCTCAGAAATGGTCTTACACTGGC
1 A-TGCCATGTCCCAGACATGGTCTTACACTGGC
72461167 ACACATATCA
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
96 104 0.99
97 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (96 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAACATCGTCGATGCCATGTCCCAAACA
TGGTCTTACATTAGCGCACATATCAAAGCCA
Found at i:72461176 original size:144 final size:144
Alignment explanation
Indices: 72460749--72461176 Score: 382
Period size: 144 Copynumber: 3.0 Consensus size: 144
72460739 ACATGTCGAG
* * * * * * * * *
72460749 GCCGATGCCATGTCCCATACATGGCCTTACACTAGCTCTCGTC-TCTTTGCTGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTC-ACAACATCGCCGATGCCACGTCCC
* * * * * * * *
72460813 AGACATGGTCTTACACTAGCTTTCA-AA-AGGTGCCTATGCCATGTCCTAG-CATGGTCTTACAC
65 AAACATGGTCTTAAACTGGCTCTCATAATATG-GCCAATGCCATGTCCCAGAAATGGTCTTACAC
* *
72460875 TAACGCACATATCAAT
129 TAGCGCACATATCAAA
* * * * * ** *
72460891 GCCGATGCTATTTCCCAGACATGGTCTTACACTAGTTCTCATAAGGTGGCCGATGCCACGTCCCA
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCACAACATCGCCGATGCCACGTCCCA
* * * *
72460956 AACATGGTCTTAAACTGGCTCTCATAATATGGTCGATGCCATGTCCCAGACATGGTCTTACATTA
66 AACATGGTCTTAAACTGGCTCTCATAATATGGCCAATGCCATGTCCCAGAAATGGTCTTACACTA
*
72461021 GCGCACGTATCAAA
131 GCGCACATATCAAA
* * * * *
72461035 GTCGATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCACAACATCGTCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCACAACATCGCCGATGCCACGTCCCA
* * * * *
72461100 AACATGGTCTTACATTGGCTCTCAT-ATCGTGGCCAACT-CTATGTCTCAGAAATGGTCTTACAC
66 AACATGGTCTTAAACTGGCTCTCATAAT-ATGGCCAA-TGCCATGTCCCAGAAATGGTCTTACAC
* *
72461163 TGGCACACATATCA
129 TAGCGCACATATCA
72461177 CCCAAATGTC
Statistics
Matches: 230, Mismatches: 50, Indels: 10
0.79 0.17 0.03
Matches are distributed among these distances:
142 71 0.31
143 19 0.08
144 139 0.60
145 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAGACACGGTCTTACACTAGCTCTCACAACATCGCCGATGCCACGTCCCA
AACATGGTCTTAAACTGGCTCTCATAATATGGCCAATGCCATGTCCCAGAAATGGTCTTACACTA
GCGCACATATCAAA
Found at i:72470776 original size:28 final size:28
Alignment explanation
Indices: 72470642--72470770 Score: 204
Period size: 28 Copynumber: 4.6 Consensus size: 28
72470632 TGGGAAACAG
*
72470642 TTGGGCCAGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
* *
72470670 CTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
72470698 TTGGGCCTGATGGGCCATATGAAGGTGA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
72470726 TTGGGCCTGATGGGCCATATGAATGTAA
1 TTGGGCCTGATGGGCCATATGAATGTGA
*
72470754 TTGGGCTTGATGGGCCA
1 TTGGGCCTGATGGGCCA
72470771 AGTGAACGAG
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.22, C:0.15, G:0.36, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGTGA
Found at i:72470789 original size:56 final size:56
Alignment explanation
Indices: 72470642--72470799 Score: 183
Period size: 56 Copynumber: 2.8 Consensus size: 56
72470632 TGGGAAACAG
* * * * * * *
72470642 TTGGGCCAGATGGGCCATATGAATGTGACTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAACGAGATTAGGCCTGATGGGCCATATGAATGTAA
* * *
72470698 TTGGGCCTGATGGGCCATATGAAGGTGATTGGGCCTGATGGGCCATATGAATGTAA
1 TTGGGCCTGATGGGCCATATGAACGAGATTAGGCCTGATGGGCCATATGAATGTAA
* *
72470754 TTGGGCTTGATGGGCCA-AGTGAACGAGATTAGGCCTAAATGGGCCA
1 TTGGGCCTGATGGGCCATA-TGAACGAGATTAGGCCT-GATGGGCCA
72470800 AATAAATAAC
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
55 1 0.01
56 81 0.90
57 8 0.09
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.25
Consensus pattern (56 bp):
TTGGGCCTGATGGGCCATATGAACGAGATTAGGCCTGATGGGCCATATGAATGTAA
Found at i:72470789 original size:84 final size:85
Alignment explanation
Indices: 72470642--72470799 Score: 214
Period size: 84 Copynumber: 1.9 Consensus size: 85
72470632 TGGGAAACAG
* * * *
72470642 TTGGGCCAGATGGGCCATATGAATGTGACTGGGTCTGATGGGCCATATGAATGTGATTGGGCCT-
1 TTGGGCCAGATGGGCCATATGAATGTAACTGGGTCTGATGGGCCATATGAACGAGATTAGGCCTA
*
72470706 GATGGGCCATATGAAGGTGA
66 AATGGGCCATATGAAGGTGA
* *
72470726 TTGGGCCTGATGGGCCATATGAATGTAATTGGG-CTTGATGGGCCA-AGTGAACGAGATTAGGCC
1 TTGGGCCAGATGGGCCATATGAATGTAACTGGGTC-TGATGGGCCATA-TGAACGAGATTAGGCC
72470789 TAAATGGGCCA
64 TAAATGGGCCA
72470800 AATAAATAAC
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
83 2 0.03
84 54 0.84
85 8 0.12
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.25
Consensus pattern (85 bp):
TTGGGCCAGATGGGCCATATGAATGTAACTGGGTCTGATGGGCCATATGAACGAGATTAGGCCTA
AATGGGCCATATGAAGGTGA
Found at i:72471136 original size:27 final size:26
Alignment explanation
Indices: 72471106--72471581 Score: 411
Period size: 27 Copynumber: 17.7 Consensus size: 26
72471096 TAATAAAGAG
*
72471106 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTA-TGAAATACCCTCGATTTGTA
*
72471133 AAATTACGAAAATACCC-CTGATTTGTA
1 AAATTATG-AAATACCCTC-GATTTGTA
*
72471160 AAATTATCGAAATACCCTCGA-TTGTG
1 AAATTAT-GAAATACCCTCGATTTGTA
*
72471186 AAATTATTGAAATACCCTCAATTTGTA
1 AAATTA-TGAAATACCCTCGATTTGTA
* *
72471213 AAATTATCAAAATACCCCCGATTTGTA
1 AAATTAT-GAAATACCCTCGATTTGTA
* *
72471240 AAATTATCGAAACACCCTCAATTTGTA
1 AAATTAT-GAAATACCCTCGATTTGTA
* * *
72471267 AAATTACTGAAACACTCTCAATTTGTA
1 AAATTA-TGAAATACCCTCGATTTGTA
* *
72471294 AAATTACTGAAACACCCTCGATTTGTG
1 AAATTA-TGAAATACCCTCGATTTGTA
*
72471321 AAATTATTAAAATACCCTCGATTTGTA
1 AAATTA-TGAAATACCCTCGATTTGTA
* * *
72471348 AAATTATCAAAACACCCTTGATTTGTA
1 AAATTAT-GAAATACCCTCGATTTGTA
* **
72471375 AAATTACTGAAACATGCTCGATTTGTA
1 AAATTA-TGAAATACCCTCGATTTGTA
* * *
72471402 AAATTATCAAAATACCGTCAATTTGTA
1 AAATTAT-GAAATACCCTCGATTTGTA
* **
72471429 AAATTACCGAAATACCCTTTATTTGTA
1 AAATTA-TGAAATACCCTCGATTTGTA
* * *
72471456 AAATTACCGAAATACCATTGATTTGTA
1 AAATTA-TGAAATACCCTCGATTTGTA
*
72471483 AAATTATCGAAACACCC-CTGATTTGTA
1 AAATTAT-GAAATACCCTC-GATTTGTA
* *
72471510 AAATTATCGAAATACCATCAATTTGTA
1 AAATTAT-GAAATACCCTCGATTTGTA
* * *
72471537 AAATTATTGAAACACCCCCAATTT-TA
1 AAATTA-TGAAATACCCTCGATTTGTA
*
72471563 TATATTATCGAAATACCCT
1 -AAATTAT-GAAATACCCT
72471582 TGTAGTGTAA
Statistics
Matches: 378, Mismatches: 53, Indels: 36
0.81 0.11 0.08
Matches are distributed among these distances:
26 30 0.08
27 342 0.90
28 6 0.02
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (26 bp):
AAATTATGAAATACCCTCGATTTGTA
Found at i:72471268 original size:54 final size:54
Alignment explanation
Indices: 72471106--72471581 Score: 475
Period size: 54 Copynumber: 8.8 Consensus size: 54
72471096 TAATAAAGAG
* *
72471106 AAATTA-CTGAAATACCCTCAATTTGTAAAATTA-CGAAAATACCC-CTGATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTAAAATTATCG-AAATACCCTC-AATTTGTA
* *
72471160 AAATTATCGAAATACCCTCGA-TTGTGAAATTATTGAAATACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTA
* * *
72471213 AAATTATCAAAATACCCCCGATTTGTAAAATTATCGAAACACCCTCAATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTA
* * * * * *
72471267 AAATTA-CTGAAACACTCTCAATTTGTAAAATTA-CTGAAACACCCTCGATTTGTG
1 AAATTATC-GAAATACCCTCGATTTGTAAAATTATC-GAAATACCCTCAATTTGTA
** * * **
72471321 AAATTATTAAAATACCCTCGATTTGTAAAATTATCAAAACACCCTTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTA
* ** * *
72471375 AAATTA-CTGAAACATGCTCGATTTGTAAAATTATCAAAATACCGTCAATTTGTA
1 AAATTATC-GAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTA
* ** * * **
72471429 AAATTACCGAAATACCCTTTATTTGTAAAATTACCGAAATACCATTGATTTGTA
1 AAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTA
* *
72471483 AAATTATCGAAACACCC-CTGATTTGTAAAATTATCGAAATACCATCAATTTGTA
1 AAATTATCGAAATACCCTC-GATTTGTAAAATTATCGAAATACCCTCAATTTGTA
* * * * *
72471537 AAATTATTGAAACACCCCCAATTT-TATATATTATCGAAATACCCT
1 AAATTATCGAAATACCCTCGATTTGTA-AAATTATCGAAATACCCT
72471582 TGTAGTGTAA
Statistics
Matches: 355, Mismatches: 54, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
53 48 0.14
54 303 0.85
55 4 0.01
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
AAATTATCGAAATACCCTCGATTTGTAAAATTATCGAAATACCCTCAATTTGTA
Found at i:72471316 original size:81 final size:81
Alignment explanation
Indices: 72471106--72471608 Score: 520
Period size: 81 Copynumber: 6.2 Consensus size: 81
72471096 TAATAAAGAG
*
72471106 AAATTACTGAAATACCCTCAATTTGTAAAATTAC-GAAAATACCC-CTGATTTGTAAAATTATCG
1 AAATTACTGAAATACCCTCAATTTGTAAAATTACTG-AAACACCCTC-GATTTGTAAAATTATCG
*
72471169 AAATACCCTCGA-TTGTG
64 AAATACCCTCGATTTGTA
* * * *
72471186 AAATTATTGAAATACCCTCAATTTGTAAAATTA-TCAAAATACCCCCGATTTGTAAAATTATCGA
1 AAATTACTGAAATACCCTCAATTTGTAAAATTACT-GAAACACCCTCGATTTGTAAAATTATCGA
* *
72471250 AACACCCTCAATTTGTA
65 AATACCCTCGATTTGTA
* * * **
72471267 AAATTACTGAAACACTCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTGAAATTATTAAA
1 AAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAA
72471332 ATACCCTCGATTTGTA
66 ATACCCTCGATTTGTA
* * ** ** *
72471348 AAATTA-TCAAAACACCCTTGATTTGTAAAATTACTGAAACATGCTCGATTTGTAAAATTATCAA
1 AAATTACT-GAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTATCGA
* *
72471412 AATACCGTCAATTTGTA
65 AATACCCTCGATTTGTA
* ** * * * *
72471429 AAATTACCGAAATACCCTTTATTTGTAAAATTACCGAAATACCATTGATTTGTAAAATTATCGAA
1 AAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAA
*
72471494 ACACCC-CTGATTTGTA
66 ATACCCTC-GATTTGTA
* * * * *
72471510 AAATTA-TCGAAATACCATCAATTTGTAAAATTATTGAAACACCCCCAATTT-TATATATTATCG
1 AAATTACT-GAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTA-AAATTATCG
* *
72471573 AAATACCCTTG-TAGTGTA
64 AAATACCCTCGAT-TTGTA
* *
72471591 AAATGACTGACATACCCT
1 AAATTACTGAAATACCCT
72471609 TGTAGGGTTT
Statistics
Matches: 352, Mismatches: 58, Indels: 25
0.81 0.13 0.06
Matches are distributed among these distances:
80 72 0.20
81 278 0.79
82 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAACACCCTCGATTTGTAAAATTATCGAA
ATACCCTCGATTTGTA
Found at i:72473839 original size:24 final size:24
Alignment explanation
Indices: 72473798--72473848 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
72473788 TTTTAGATGT
72473798 AAAACGACAAAGGCTGAAAAGCTGA
1 AAAACGACAAAGGCTGAAAAGC-GA
72473823 AAAACTGA-AAAGG-TGAAAAGCGA
1 AAAAC-GACAAAGGCTGAAAAGCGA
72473846 AAA
1 AAA
72473849 TGTAAGTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 5 0.20
24 8 0.32
25 10 0.40
26 2 0.08
ACGTcount: A:0.57, C:0.12, G:0.24, T:0.08
Consensus pattern (24 bp):
AAAACGACAAAGGCTGAAAAGCGA
Found at i:72473847 original size:7 final size:8
Alignment explanation
Indices: 72473810--72473848 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
72473800 AACGACAAAG
72473810 GCTGAAAA
1 GCTGAAAA
72473818 GCTGAAAA
1 GCTGAAAA
*
72473826 ACTGAAAA
1 GCTGAAAA
*
72473834 GGTGAAAA
1 GCTGAAAA
72473842 GC-GAAAA
1 GCTGAAAA
72473849 TGTAAGTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
7 5 0.19
8 22 0.81
ACGTcount: A:0.54, C:0.10, G:0.26, T:0.10
Consensus pattern (8 bp):
GCTGAAAA
Found at i:72475974 original size:14 final size:14
Alignment explanation
Indices: 72475955--72475985 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
72475945 GACCTGGGAG
72475955 TTTTTCAAGAATAC
1 TTTTTCAAGAATAC
72475969 TTTTTCAAGAATAC
1 TTTTTCAAGAATAC
72475983 TTT
1 TTT
72475986 GTAGGCTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.13, G:0.06, T:0.48
Consensus pattern (14 bp):
TTTTTCAAGAATAC
Found at i:72490083 original size:40 final size:40
Alignment explanation
Indices: 72490038--72490204 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72490028 CGGAATATAA
72490038 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72490078 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72490118 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72490158 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72490197 CCGGATAT
1 CCGGATAT
72490205 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72490188 original size:80 final size:79
Alignment explanation
Indices: 72490038--72490204 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
72490028 CGGAATATAA
* *
72490038 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
72490103 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
72490118 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
72490180 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
72490197 CCGGATAT
1 CCGGATAT
72490205 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:72491052 original size:17 final size:19
Alignment explanation
Indices: 72491029--72491074 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72491019 AAGAAGCATG
72491029 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
72491047 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
72491065 AATCATGCTC
1 AATCATGCTC
72491075 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:72498089 original size:40 final size:40
Alignment explanation
Indices: 72498044--72498210 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
72498034 CGGAATATAA
72498044 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
72498084 CCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* * *
72498124 CCGGATATAACCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
72498164 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
72498203 CCGGATAT
1 CCGGATAT
72498211 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:72498194 original size:80 final size:79
Alignment explanation
Indices: 72498044--72498210 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 79
72498034 CGGAATATAA
* *
72498044 CCGGATATAATCACGTGCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATG
1 CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
72498109 CCTTCGGGCCTTAGC
66 CCTTCGGG-CTTAGC
* * ** *
72498124 CCGGATATAACCAC-TAGCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAA
1 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA
*
72498186 TTGTCTTCGGGCTTAGC
64 -TGCCTTCGGGCTTAGC
72498203 CCGGATAT
1 CCGGATAT
72498211 CATTCAATTT
Statistics
Matches: 76, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
79 18 0.24
80 58 0.76
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (79 bp):
CCGGATATAACCACGTGCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATG
CCTTCGGGCTTAGC
Found at i:72499058 original size:17 final size:19
Alignment explanation
Indices: 72499035--72499080 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
72499025 AAGAAGCATG
72499035 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
72499053 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
72499071 AATCATGCTC
1 AATCATGCTC
72499081 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:72505213 original size:40 final size:40
Alignment explanation
Indices: 72505158--72505318 Score: 180
Period size: 40 Copynumber: 4.0 Consensus size: 40
72505148 TGAATGATAC
* *
72505158 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* *
72505198 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTATAT
* * ** *
72505238 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
* * * * *
72505278 CCGGGTTAAGACCCGTAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
72505318 C
1 C
72505319 TGGCTAAATT
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 96 0.97
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTATAT
Found at i:72508583 original size:24 final size:24
Alignment explanation
Indices: 72508551--72508601 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
72508541 ATACTTAGCC
* *
72508551 ACCAGTAGGATGATCAGGACCAGT
1 ACCAATAGGACGATCAGGACCAGT
72508575 ACCAATAGGACGATCAGGACCAGT
1 ACCAATAGGACGATCAGGACCAGT
72508599 ACC
1 ACC
72508602 TAGATCACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.14
Consensus pattern (24 bp):
ACCAATAGGACGATCAGGACCAGT
Found at i:72510409 original size:43 final size:43
Alignment explanation
Indices: 72510352--72510466 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
72510342 TAATGTCATA
* * *
72510352 TCCCAGATATGGTCTTACATGTTATCACATATCGA-TGCCTC-TG
1 TCCCAGACATGGTCTTACATGTAATCACATATC-ACTACC-CATG
* * *
72510395 TCCCAGACAGGGTCTTACACGTAATCTCATATCACTACCCATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCACTACCCATG
* *
72510438 TCCCAGACATAGTCTTACATGAAATCACA
1 TCCCAGACATGGTCTTACATGTAATCACA
72510467 CCTCGAAAGT
Statistics
Matches: 59, Mismatches: 11, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.03
43 57 0.97
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCACTACCCATG
Found at i:72514824 original size:22 final size:23
Alignment explanation
Indices: 72514776--72514839 Score: 78
Period size: 22 Copynumber: 2.8 Consensus size: 23
72514766 GACTCACCAC
* *
72514776 AGCTCGTATGAGCTTACCGTTTT
1 AGCTCTTATGAGCTTACCGATTT
*
72514799 AGCTCTTATGAGCTTATC-ATTT
1 AGCTCTTATGAGCTTACCGATTT
72514821 AGCTCTTCA-GAGCTTACCG
1 AGCTCTT-ATGAGCTTACCG
72514840 TTTCAGTCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
22 18 0.51
23 17 0.49
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (23 bp):
AGCTCTTATGAGCTTACCGATTT
Found at i:72514854 original size:22 final size:22
Alignment explanation
Indices: 72514775--72514872 Score: 92
Period size: 23 Copynumber: 4.3 Consensus size: 22
72514765 AGACTCACCA
*
72514775 CAGCTCGTATGAGCTTACCGTTT
1 CAGCTCTTA-GAGCTTACCGTTT
* * *
72514798 TAGCTCTTATGAGCTTATCATTT
1 CAGCTCTTA-GAGCTTACCGTTT
72514821 -AGCTCTTCAGAGCTTACCGTTT
1 CAGCTCTT-AGAGCTTACCGTTT
*
72514843 CAG-TCCTTAGAGGCTTACTGTTT
1 CAGCT-CTTAGA-GCTTACCGTTT
72514866 CAGCTCT
1 CAGCTCT
72514873 ACGGAGCCTA
Statistics
Matches: 63, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
22 22 0.35
23 40 0.63
24 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.39
Consensus pattern (22 bp):
CAGCTCTTAGAGCTTACCGTTT
Found at i:72527105 original size:43 final size:43
Alignment explanation
Indices: 72527058--72527159 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
72527048 CAGATATGGT
* *
72527058 CTTACATGTTATCACATATCGATGCCT-CTGTCCCAGACAGGGC
1 CTTACATGTAATCACATATCGATG-CTAATGTCCCAGACAGGGC
* * * *
72527101 CTTACACGTAATCTCATATCGATGCTAATGTCCCAGACATGGT
1 CTTACATGTAATCACATATCGATGCTAATGTCCCAGACAGGGC
*
72527144 CTTACATGGAATCACA
1 CTTACATGTAATCACA
72527160 CCTCAGAAGT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 2 0.04
43 47 0.96
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
CTTACATGTAATCACATATCGATGCTAATGTCCCAGACAGGGC
Found at i:72528770 original size:21 final size:20
Alignment explanation
Indices: 72528740--72528778 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
72528730 ACATACTTGT
72528740 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
72528760 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
72528779 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:72529833 original size:126 final size:126
Alignment explanation
Indices: 72529685--72529938 Score: 436
Period size: 126 Copynumber: 2.0 Consensus size: 126
72529675 ATGAAATACA
72529685 TTATGGATATTTTCTAATTCTGATGGTAAAGCTAGCCGATATGCCACTGGCCCTAATCTTTCGAT
1 TTATGGATATTTTCTAATTCTGATGGTAAAGCTAGCCGATATGCCACTGGCCCTAATCTTTCGAT
* * *
72529750 GATCTTATACGGCTCGATGAAACGCAGACTCAATTTGCCTTTGCAACCAAAACGAATAATT
66 GATCTTATACAGCCCGATGAAACGCAGACTCAATTTGCCTTTGCAACCAAAACGAAGAATT
*
72529811 TTATGGATATTTTCTAATTCTGATGGTAAAGCTAGCCGATATGCCACTGGCCCTATTCTTTCGAT
1 TTATGGATATTTTCTAATTCTGATGGTAAAGCTAGCCGATATGCCACTGGCCCTAATCTTTCGAT
* * * *
72529876 GATTTTATACAGCCCGATGAAACGCGGACTCAATTTGCCTTTGCGACCAAAACTAAGAATT
66 GATCTTATACAGCCCGATGAAACGCAGACTCAATTTGCCTTTGCAACCAAAACGAAGAATT
72529937 TT
1 TT
72529939 CTTCCACGGA
Statistics
Matches: 120, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 120 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (126 bp):
TTATGGATATTTTCTAATTCTGATGGTAAAGCTAGCCGATATGCCACTGGCCCTAATCTTTCGAT
GATCTTATACAGCCCGATGAAACGCAGACTCAATTTGCCTTTGCAACCAAAACGAAGAATT
Found at i:72532033 original size:49 final size:49
Alignment explanation
Indices: 72531990--72532215 Score: 236
Period size: 49 Copynumber: 4.6 Consensus size: 49
72531980 CTGGTATGCA
*
72531990 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
* * ** * * ** * *
72532039 TTGTAGCCTACTTTTAGTACTACATACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGGTACACG
* * * * * *
72532089 TAGTAGCATGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGGTACACG
* ** *
72532140 TAGTAGCCTGCACTTAGTACTACATATACGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
72532189 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
72532216 ATGACCTCAC
Statistics
Matches: 138, Mismatches: 36, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
49 62 0.45
50 42 0.30
51 34 0.25
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGGTACACG
Found at i:72532213 original size:100 final size:99
Alignment explanation
Indices: 72531990--72532215 Score: 256
Period size: 100 Copynumber: 2.3 Consensus size: 99
72531980 CTGGTATGCA
* * * * **
72531990 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTTGTAGCCTACTTTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTACACTTA
** **
72532055 GTACTACATACGTGACCTAACCATTTGATACACG
66 GTACTACATACACGACCTAACCATCCGATACACG
* * * * *
72532089 TAGTAGCATGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCGGGTACACATAGTAGCCTACACT
* ** *
72532154 TAGTACTACATATACGACC-AATTATCCGGTACACG
64 TAGTACTACATACACGACCTAACCATCCGATACACG
72532189 TAGTAGCCTGCACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
72532216 ATGACCTCAC
Statistics
Matches: 105, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
99 28 0.27
100 40 0.38
101 37 0.35
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCGGGTACACATAGTAGCCTACACTTA
GTACTACATACACGACCTAACCATCCGATACACG
Found at i:72534164 original size:28 final size:28
Alignment explanation
Indices: 72534113--72534174 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
72534103 TTTTCATTTA
*
72534113 TTTCACATTTTAACCACTAACTTTACAAT
1 TTTCACAATTTAACCACTAACTTTAC-AT
*
72534142 TTTCACAATTTAATCC-CT-ACTTTGCAT
1 TTTCACAATTTAA-CCACTAACTTTACAT
72534169 TTTCAC
1 TTTCAC
72534175 TAAAAATCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 8 0.27
28 6 0.20
29 14 0.47
30 2 0.07
ACGTcount: A:0.29, C:0.26, G:0.02, T:0.44
Consensus pattern (28 bp):
TTTCACAATTTAACCACTAACTTTACAT
Found at i:72537397 original size:29 final size:29
Alignment explanation
Indices: 72537355--72537424 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 29
72537345 ACATGGCTTG
*
72537355 GAAT-TGATTCGGGCC-AGATGGGCCATAT
1 GAATGTGATTTGGGCCGA-ATGGGCCATAT
72537383 GAATGTGATTTGGGCCGAATGGGCCATAT
1 GAATGTGATTTGGGCCGAATGGGCCATAT
*
72537412 GAATGAGATTTGG
1 GAATGTGATTTGG
72537425 CCTAGTAGGC
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
28 4 0.11
29 33 0.87
30 1 0.03
ACGTcount: A:0.26, C:0.13, G:0.34, T:0.27
Consensus pattern (29 bp):
GAATGTGATTTGGGCCGAATGGGCCATAT
Found at i:72537436 original size:28 final size:29
Alignment explanation
Indices: 72537375--72537439 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
72537365 GGGCCAGATG
* *
72537375 GGCCATATGAATGTGATTTGGGCCGAATG
1 GGCCATATGAATGAGATTTGGGCCGAATA
* *
72537404 GGCCATATGAATGAGATTT-GGCCTAGTA
1 GGCCATATGAATGAGATTTGGGCCGAATA
72537432 GGCCATAT
1 GGCCATAT
72537440 ACATATATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 14 0.44
29 18 0.56
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (29 bp):
GGCCATATGAATGAGATTTGGGCCGAATA
Found at i:72540486 original size:42 final size:43
Alignment explanation
Indices: 72540384--72540545 Score: 129
Period size: 43 Copynumber: 3.8 Consensus size: 43
72540374 ATCTCGTACA
** * * *
72540384 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCGA-ATA-TCA
1 ATGCCAACGTCCCAGACAAGGTCTTACACGAAATC-ATA-AGTCG
*
72540427 ATGCC-ACTATCCCAGACAAGGTCTTACACGAAATCA-AA-TCTG
1 ATGCCAAC-GTCCCAGACAAGGTCTTACACGAAATCATAAGTC-G
* * *
72540469 AT-CCTGATGTCCCAGACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCC-AACGTCCCAGACAAGGTCTTACACG-AAATCATAAGTCG
* *
72540513 ATGCCAACGTCCCAGACGAGGTCTCACACGAAA
1 ATGCCAACGTCCCAGACAAGGTCTTACACGAAA
72540546 ACACATATCA
Statistics
Matches: 97, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
41 5 0.05
42 26 0.27
43 37 0.38
44 25 0.26
45 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAAGGTCTTACACGAAATCATAAGTCG
Found at i:72546729 original size:40 final size:40
Alignment explanation
Indices: 72546627--72546778 Score: 173
Period size: 40 Copynumber: 3.8 Consensus size: 40
72546617 AAATTGAATG
* * * * *
72546627 ATATCCGGGCTAAGCCCCGAAGACAATTATGCT-GAAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TAGTT
* *
72546667 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
72546707 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCCAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* *
72546747 AAATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
72546779 AAATCGTGAT
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 90 0.94
41 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:72546793 original size:40 final size:38
Alignment explanation
Indices: 72546623--72546795 Score: 152
Period size: 40 Copynumber: 4.4 Consensus size: 38
72546613 TGAGAAATTG
* * *
72546623 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
72546663 AAT-TATATCCGGGTTAAGACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
72546700 AGTAGCTATATCCGGGCTAAGACCCGAAGGCATTCGTGCCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTG-CA
** *
72546741 GTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 AATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
72546780 AATCGTGATATCCGGG
1 AAT-GT-ATATCCGGG
72546796 TTAACTCCCG
Statistics
Matches: 107, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 6 0.06
40 93 0.87
41 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:72554635 original size:56 final size:56
Alignment explanation
Indices: 72554549--72554738 Score: 263
Period size: 56 Copynumber: 3.4 Consensus size: 56
72554539 TGTGACACTG
* * * *
72554549 ATATAAGTGTACGAGTAAGTCCACGTTTAATATGTTGGCATCGATATTTGACTCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
* * * **
72554605 ATATATGTATGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGACTCTG
1 ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
* * *
72554661 ATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATAAATGAATCCA
1 ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
*
72554717 ATATATGTGTTCGAGTAAGACC
1 ATATATGTGTGCGAGTAAGACC
72554739 TTGTCTGGCG
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (56 bp):
ATATATGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCGATATATGACTCCA
Found at i:72554732 original size:112 final size:112
Alignment explanation
Indices: 72554532--72554738 Score: 324
Period size: 112 Copynumber: 1.8 Consensus size: 112
72554522 ACTCTGATAT
* * **
72554532 ATCAATATGTGACACTGATATAAGTGTACGAGTAAGTCCACGTTTAATATGTTGGCATCGATATT
1 ATCAATATGTGACACTGATATAAGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATAAA
*
72554597 TGACTCCAATATATGTATGCGAGTAAGACCACGTTTAATATGTTGGC
66 TGAATCCAATATATGTATGCGAGTAAGACCACGTTTAATATGTTGGC
* * *
72554644 ATCAATATGTGACTCTGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATAAA
1 ATCAATATGTGACACTGATATAAGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATAAA
* *
72554709 TGAATCCAATATATGTGTTCGAGTAAGACC
66 TGAATCCAATATATGTATGCGAGTAAGACC
72554739 TTGTCTGGCG
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 85 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (112 bp):
ATCAATATGTGACACTGATATAAGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATAAA
TGAATCCAATATATGTATGCGAGTAAGACCACGTTTAATATGTTGGC
Found at i:72557918 original size:40 final size:40
Alignment explanation
Indices: 72557861--72558063 Score: 259
Period size: 40 Copynumber: 5.0 Consensus size: 40
72557851 TCGAATGATG
* * * *
72557861 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
**
72557901 TCCGGACTAAGATCCGAAGGCATTCATGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
72557941 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
72557981 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
** *
72558021 TCCGGGTTAAG-TCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
72558062 TC
1 TC
72558064 GGGCTATTCC
Statistics
Matches: 146, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 135 0.92
41 10 0.07
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72566089 original size:38 final size:40
Alignment explanation
Indices: 72565900--72566082 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
72565890 TCGAATGATG
* * *
72565900 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
72565940 TCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72565980 TCC-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
72566019 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
72566060 -CCGGGCT-ATTCCC-AAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
72566083 AACGAGTAGC
Statistics
Matches: 128, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
38 10 0.08
39 44 0.34
40 65 0.51
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:72572590 original size:40 final size:39
Alignment explanation
Indices: 72572430--72572592 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
72572420 TGTGTATGAA
*
72572430 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
*
72572469 TGTGCGAGTTGTGATATCTGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
72572508 GGTGCGAGCTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
72572547 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
72572587 TGTGCG
1 TGTGCG
72572593 GGTTACCATA
Statistics
Matches: 112, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 95 0.85
40 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.33, T:0.25
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:72572608 original size:40 final size:40
Alignment explanation
Indices: 72572447--72572628 Score: 154
Period size: 39 Copynumber: 4.6 Consensus size: 40
72572437 ATTGTGATAT
* *** *
72572447 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* * * * ** *
72572486 CTGGGCTAAG-CCCGAAGGCAATGGTGCGAGCTATGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *** *
72572525 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTGTGATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
72572564 CCGGGTTAAGTCCCGAAGGCATTTGTGCGGGTTACCATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
* *
72572604 CCGGGCTATGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
72572629 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
39 79 0.64
40 45 0.36
ACGTcount: A:0.22, C:0.22, G:0.33, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAA
Found at i:72574305 original size:27 final size:28
Alignment explanation
Indices: 72574247--72574316 Score: 115
Period size: 27 Copynumber: 2.5 Consensus size: 28
72574237 AAATTTGTAC
*
72574247 AGCACTAAGTGTGCGAGTTTGATTAGAT
1 AGCACTAAGTGTGCGAGTTTGATTAGAG
*
72574275 AGCACTAAGTGTGCGAG-TTGATTATAG
1 AGCACTAAGTGTGCGAGTTTGATTAGAG
72574302 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
72574317 GACTCACTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.57
28 17 0.43
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTAGAG
Done.