Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 233 of 325
Found at i:72932539 original size:108 final size:110
Alignment explanation
Indices: 72932395--72932592 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
72932385 ATCCTTTTGA
* * *
72932395 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTAACCAA
1 AACTTACCAATGCCATGTCTTGACATCGTCTTACATGATAGCCTTGCCTTA-GAAACCTAACCAA
*
72932458 -TGCCATGCCTTGGCATGGTTTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
72932503 AACTTATCAATGCCATGTCTTGACATCGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATCGTCTTACATGATAGCCTTGCCTTAGAAACCTAACCAAT
72932568 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
72932593 CGGTATCCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 47 0.59
109 7 0.09
110 24 0.30
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATCGTCTTACATGATAGCCTTGCCTTAGAAACCTAACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:72935451 original size:20 final size:20
Alignment explanation
Indices: 72935413--72935451 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72935403 AGACTAAATC
* **
72935413 GGAAACATATGAAGTTTTTA
1 GGAAAAATATGAAAATTTTA
72935433 GGAAAAATATGAAAATTTT
1 GGAAAAATATGAAAATTTT
72935452 CAAATTGCAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.18, T:0.33
Consensus pattern (20 bp):
GGAAAAATATGAAAATTTTA
Found at i:72937680 original size:27 final size:25
Alignment explanation
Indices: 72937617--72937685 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 25
72937607 TGTACATATA
*
72937617 TGCTCACACGAGCTGTGAATAAGTG
1 TGCTCACACGAGCTGTGAATAAGGG
72937642 TGCTCACACGAGCTGTGAA-AATGGG
1 TGCTCACACGAGCTGTGAATAA-GGG
*
72937667 CTTGCTCACACGAGTTGTG
1 --TGCTCACACGAGCTGTG
72937686 GGTCGGAACT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
24 2 0.05
25 21 0.54
27 16 0.41
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (25 bp):
TGCTCACACGAGCTGTGAATAAGGG
Found at i:72944656 original size:40 final size:41
Alignment explanation
Indices: 72944584--72944660 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 41
72944574 TTAAAAAGGG
* *
72944584 ATGCATGGACATTCATAAAAGAGGGGATTTGACCATTCAAC
1 ATGCATGGACATTCATAAAAGAAGGCATTTGACCATTCAAC
**
72944625 ATGCATGGATGTTCAT-AAAGAAGGCATTTGACCATT
1 ATGCATGGACATTCATAAAAGAAGGCATTTGACCATT
72944661 TAGTTGAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 18 0.56
41 14 0.44
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (41 bp):
ATGCATGGACATTCATAAAAGAAGGCATTTGACCATTCAAC
Found at i:72946456 original size:27 final size:27
Alignment explanation
Indices: 72946438--72946509 Score: 108
Period size: 27 Copynumber: 2.7 Consensus size: 27
72946428 GTTGGCTAGT
*
72946438 ATTACAGAAATACCCTTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
* *
72946465 ATTACTGAAATGCCCCTGTAGGGTAGA
1 ATTACTGAAATACCCTTGTAGGGTAGA
*
72946492 ATTACTGAAATACTCTTG
1 ATTACTGAAATACCCTTG
72946510 GTTTACAAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (27 bp):
ATTACTGAAATACCCTTGTAGGGTAGA
Found at i:72946521 original size:27 final size:26
Alignment explanation
Indices: 72946491--72946549 Score: 91
Period size: 26 Copynumber: 2.2 Consensus size: 26
72946481 TGTAGGGTAG
* *
72946491 AATTACTGAAATACTCTTGGTTTACAA
1 AATTACTG-AATACCCATGGTTTACAA
72946518 AATTACTGAATACCCATGGTTTACAA
1 AATTACTGAATACCCATGGTTTACAA
72946544 AATTAC
1 AATTAC
72946550 CAAAATACCC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 22 0.73
27 8 0.27
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (26 bp):
AATTACTGAATACCCATGGTTTACAA
Found at i:72946572 original size:27 final size:27
Alignment explanation
Indices: 72946542--72946748 Score: 177
Period size: 27 Copynumber: 7.7 Consensus size: 27
72946532 CATGGTTTAC
* * *
72946542 AAAATTACCAAAATA-CCCTCGATTAGA
1 AAAATTACCAAAATACCCCT-AATTTGT
* * **
72946569 AAAATTATCGAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
* *
72946596 AAATTTACCAAAATACCCCTAATTTTT
1 AAAATTACCAAAATACCCCTAATTTGT
* * * **
72946623 GAAATTACCGAAATACCCTTGCTTTGT
1 AAAATTACCAAAATACCCCTAATTTGT
72946650 AAAATTACCAAAATACCCCTAATTTAG-
1 AAAATTACCAAAATACCCCTAATTT-GT
** * *
72946677 AAAATTACTGAAATACCCTTAATTTGG
1 AAAATTACCAAAATACCCCTAATTTGT
* **
72946704 AAAATTACAAAAATACCCCTAATTTAC
1 AAAATTACCAAAATACCCCTAATTTGT
72946731 AAAATTA-CAGAAATACCC
1 AAAATTACCA-AAATACCC
72946749 TGACTTCCAA
Statistics
Matches: 144, Mismatches: 32, Indels: 8
0.78 0.17 0.04
Matches are distributed among these distances:
26 2 0.01
27 137 0.95
28 5 0.03
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAATTTGT
Found at i:72946749 original size:54 final size:53
Alignment explanation
Indices: 72946511--72946812 Score: 245
Period size: 54 Copynumber: 5.6 Consensus size: 53
72946501 ATACTCTTGG
* * ** *
72946511 TTTACAAAATTACTG-AATACCCATGGTTTACAAAATTACCAAAATA-CCCTCGA
1 TTTACAAAATTAC-GAAATACCCTTGATTTGTAAAATTACCAAAATACCCCT-AA
* * * *
72946564 -TTAGAAAAATTATCGAAATACCCCTGGTTTGTAAATTTACCAAAATACCCCTAA
1 TTTA-CAAAATTA-CGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAA
*** *
72946618 TTTTTGAAATTACCGAAATACCCTTGCTTTGTAAAATTACCAAAATACCCCTAA
1 TTTACAAAATTA-CGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAA
* * * *
72946672 TTTAGAAAATTACTGAAATACCCTTAATTTGGAAAATTACAAAAATACCCCTAA
1 TTTACAAAATTAC-GAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAA
*** * ** *
72946726 TTTACAAAATTACAGAAATACCC-TGACTTCCAAAAATTA-CAGAAACACCATTGA
1 TTTACAAAATTAC-GAAATACCCTTGA-TTTGTAAAATTACCA-AAATACCCCTAA
* *
72946780 TTTGCAAAATTAGCGAAATACCCTTGGTTTGTA
1 TTTACAAAATTA-CGAAATACCCTTGATTTGTA
72946813 GATTTATGCA
Statistics
Matches: 203, Mismatches: 36, Indels: 19
0.79 0.14 0.07
Matches are distributed among these distances:
52 3 0.01
53 12 0.06
54 179 0.88
55 9 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (53 bp):
TTTACAAAATTACGAAATACCCTTGATTTGTAAAATTACCAAAATACCCCTAA
Found at i:72946810 original size:27 final size:26
Alignment explanation
Indices: 72946491--72946810 Score: 169
Period size: 27 Copynumber: 11.9 Consensus size: 26
72946481 TGTAGGGTAG
* * *
72946491 AATTACTGAAATACTCTTGGTTTACAA
1 AATTAC-GAAATACCCTTGATTTGCAA
* * *
72946518 AATTACTG-AATACCCATGGTTTACAA
1 AATTAC-GAAATACCCTTGATTTGCAA
* * * *
72946544 AATTACCAAAATACCCTCGATTAGAAA
1 AATTA-CGAAATACCCTTGATTTGCAA
* * *
72946571 AATTATCGAAATACCCCTGGTTTGTAA
1 AATTA-CGAAATACCCTTGATTTGCAA
* * * * ***
72946598 ATTTACCAAAATACCCCTAATTTTTGA
1 AATTA-CGAAATACCCTTGATTTGCAA
* *
72946625 AATTACCGAAATACCCTTGCTTTGTAA
1 AATTA-CGAAATACCCTTGATTTGCAA
* * *
72946652 AATTACCAAAATACCCCTAATTTAG-AA
1 AATTA-CGAAATACCCTTGATTT-GCAA
* *
72946679 AATTACTGAAATACCCTTAATTTGGAA
1 AATTAC-GAAATACCCTTGATTTGCAA
* * * *
72946706 AATTACAAAAATACCCCTAATTTACAA
1 AATTAC-GAAATACCCTTGATTTGCAA
* *
72946733 AATTACAGAAATACCC-TGACTTCCAAA
1 AATTAC-GAAATACCCTTGATTTGC-AA
* *
72946760 AATTACAGAAACACCATTGATTTGCAA
1 AATTAC-GAAATACCCTTGATTTGCAA
*
72946787 AATTAGCGAAATACCCTTGGTTTG
1 AATTA-CGAAATACCCTTGATTTG
72946811 TAGATTTATG
Statistics
Matches: 233, Mismatches: 52, Indels: 16
0.77 0.17 0.05
Matches are distributed among these distances:
26 28 0.12
27 197 0.85
28 8 0.03
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (26 bp):
AATTACGAAATACCCTTGATTTGCAA
Found at i:72947123 original size:41 final size:41
Alignment explanation
Indices: 72947073--72947151 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
72947063 AAAAAATTGA
*
72947073 GGATCGCATGGTTGCTTGACGACCGTCGATCCACCGATTAT
1 GGATCGCATGGTTGCTTAACGACCGTCGATCCACCGATTAT
* * *
72947114 GGATTGCATGGTTGCTTAATGACCGTGGATCCACCGAT
1 GGATCGCATGGTTGCTTAACGACCGTCGATCCACCGAT
72947152 GGATTTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (41 bp):
GGATCGCATGGTTGCTTAACGACCGTCGATCCACCGATTAT
Found at i:72950235 original size:27 final size:27
Alignment explanation
Indices: 72950205--72950277 Score: 110
Period size: 27 Copynumber: 2.7 Consensus size: 27
72950195 ATCATATCTG
* *
72950205 TAGGCTAGTATTACTGAAATGCCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
72950232 TAGGATAGAATTACTGAAATGCCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
* *
72950259 TAGGGTAGAATTATTGAAA
1 TAGGATAGAATTACTGAAA
72950278 CACCCTTGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.29
Consensus pattern (27 bp):
TAGGATAGAATTACTGAAATGCCCCTA
Found at i:72950460 original size:27 final size:27
Alignment explanation
Indices: 72950292--72950554 Score: 193
Period size: 27 Copynumber: 9.7 Consensus size: 27
72950282 CTTGGTTTAC
* * *
72950292 AAAATTACCAAAATACCATCGA-TTAG
1 AAAATTACCAAAATACCCTTGATTTTG
* *
72950318 AAAAATTACCAAAATACCCCT-ACTTTG
1 -AAAATTACCAAAATACCCTTGATTTTG
* *
72950345 TAAAATTACCAAAATATCCTAGATTTGTG
1 -AAAATTACCAAAATACCCTTGATTT-TG
*
72950374 -AAATTACCGAAATACCC-TGA-TTTG
1 AAAATTACCAAAATACCCTTGATTTTG
* *
72950398 TAAAATTACCAAAATACCCCTGATTTGG
1 -AAAATTACCAAAATACCCTTGATTTTG
*
72950426 AAAATTATCAAAATACCCTTGATTTTG
1 AAAATTACCAAAATACCCTTGATTTTG
* * **
72950453 AAAATTA-TAGAAACACCCTTGATTTAC
1 AAAATTACCA-AAATACCCTTGATTTTG
**
72950480 AAAATTA-CAGAAATACCCTTGACTTTAA
1 AAAATTACCA-AAATACCCTTGA-TTTTG
* * *
72950508 AAAATTA-TAGAAATACCATTG-GTTTG
1 AAAATTACCA-AAATACCCTTGATTTTG
*
72950534 TAAAATTACCGAAATACCCTT
1 -AAAATTACCAAAATACCCTT
72950555 AGTTTGTAGA
Statistics
Matches: 193, Mismatches: 32, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
24 2 0.01
25 2 0.01
26 22 0.11
27 136 0.70
28 29 0.15
29 2 0.01
ACGTcount: A:0.43, C:0.18, G:0.09, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGATTTTG
Found at i:72950477 original size:107 final size:107
Alignment explanation
Indices: 72950292--72950580 Score: 253
Period size: 107 Copynumber: 2.7 Consensus size: 107
72950282 CTTGGTTTAC
72950292 AAAATTACCAAAATACCATCGATTAGAAAAATTACCAAAATACCCCTACTTTGTAAAATTACCAA
1 AAAATTACCAAAATACCATCGATTAGAAAAATTACCAAAATACCCCTACTTTGTAAAATTACCAA
* * *** *
72950357 AATATCCTAGATTTGTGAAATTACCGAAATACCCTGATTTGT
66 AACACCCTAGATTTACAAAATTACAGAAATACCCTGATTTGT
* * * * * * *
72950399 AAAATTACCAAAATACC-CCTGATTTGGAAAATTATCAAAATACCCTTGATTTTG-AAAATTA-T
1 AAAATTACCAAAATACCATC-GATTAGAAAAATTACCAAAATACCCCT-ACTTTGTAAAATTACC
* **
72950461 AGAAACACCCTTGATTTACAAAATTACAGAAATACCCTTGACTTTAA
64 A-AAACACCCTAGATTTACAAAATTACAGAAATACCC-TGA-TTTGT
* * * * * * * * * * *
72950508 AAAATTA-TAGAAATACCATTGGTTTGTAAAATTACCGAAATACCCTTAGTTTGTAGATTTACCC
1 AAAATTACCA-AAATACCATCGATTAGAAAAATTACCAAAATACCCCTACTTTGTAAAATTACCA
72950572 AAACACCCT
65 AAACACCCT
72950581 TGTAGGGTGA
Statistics
Matches: 145, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
106 2 0.01
107 75 0.52
108 14 0.10
109 54 0.37
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (107 bp):
AAAATTACCAAAATACCATCGATTAGAAAAATTACCAAAATACCCCTACTTTGTAAAATTACCAA
AACACCCTAGATTTACAAAATTACAGAAATACCCTGATTTGT
Found at i:72950559 original size:27 final size:27
Alignment explanation
Indices: 72950319--72950581 Score: 176
Period size: 27 Copynumber: 9.7 Consensus size: 27
72950309 ATCGATTAGA
* * *
72950319 AAAATTACCAAAATACCCCTACTTTGT
1 AAAATTACCGAAATACCCTTAGTTTGT
* *
72950346 AAAATTACCAAAATATCC-TAGATTTGT
1 AAAATTACCGAAATACCCTTAG-TTTGT
* *
72950373 GAAATTACCGAAATACCCTGA-TTTGT
1 AAAATTACCGAAATACCCTTAGTTTGT
* * *
72950399 AAAATTACCAAAATACCCCT-GATTTGG
1 AAAATTACCGAAATACCCTTAG-TTTGT
* * *
72950426 AAAATTATCAAAATACCCTTGATTTTG-
1 AAAATTACCGAAATACCCTT-AGTTTGT
** * **
72950453 AAAATTATAGAAACACCCTT-GATTTAC
1 AAAATTACCGAAATACCCTTAG-TTTGT
* * **
72950480 AAAATTACAGAAATACCCTTGACTTTAA
1 AAAATTACCGAAATACCCTT-AGTTTGT
** * *
72950508 AAAATTATAGAAATACCATTGGTTTGT
1 AAAATTACCGAAATACCCTTAGTTTGT
72950535 AAAATTACCGAAATACCCTTAGTTTGT
1 AAAATTACCGAAATACCCTTAGTTTGT
* * * *
72950562 AGATTTACCCAAACACCCTT
1 AAAATTACCGAAATACCCTT
72950582 GTAGGGTGAA
Statistics
Matches: 189, Mismatches: 37, Indels: 20
0.77 0.15 0.08
Matches are distributed among these distances:
26 26 0.14
27 136 0.72
28 27 0.14
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTAGTTTGT
Found at i:72950580 original size:82 final size:81
Alignment explanation
Indices: 72950319--72950582 Score: 227
Period size: 80 Copynumber: 3.3 Consensus size: 81
72950309 ATCGATTAGA
* ** * * *
72950319 AAAATTACCAAAATACCCCT-ACTTTGTAAAATTACCAAAATATCC-TAGATTTGTGAAATTACC
1 AAAATTACCAAAATACCCTTGA-TTTAAAAAATTATCAAAATA-CCATTGATTTGTAAAATTACC
*
72950382 GAAATACCCTGA-TTTGT
64 GAAATACCCTTAGTTTGT
* ** * **
72950399 AAAATTACCAAAATACCCCTGATTTGGAAAATTATCAAAATACCCTTGATTT-TGAAAATTATAG
1 AAAATTACCAAAATACCCTTGATTTAAAAAATTATCAAAATACCATTGATTTGT-AAAATTACCG
* **
72950463 AAACACCCTT-GATTTAC
65 AAATACCCTTAG-TTTGT
*
72950480 AAAATTA-CAGAAATACCCTTGACTTTAAAAAATTAT-AGAAATACCATTGGTTTGTAAAATTAC
1 AAAATTACCA-AAATACCCTTGA-TTTAAAAAATTATCA-AAATACCATTGATTTGTAAAATTAC
72950543 CGAAATACCCTTAGTTTGT
63 CGAAATACCCTTAGTTTGT
* * * *
72950562 AGATTTACCCAAACACCCTTG
1 AAAATTACCAAAATACCCTTG
72950583 TAGGGTGAAA
Statistics
Matches: 149, Mismatches: 24, Indels: 20
0.77 0.12 0.10
Matches are distributed among these distances:
79 3 0.02
80 61 0.41
81 23 0.15
82 59 0.40
83 3 0.02
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTTGATTTAAAAAATTATCAAAATACCATTGATTTGTAAAATTACCGA
AATACCCTTAGTTTGT
Found at i:72950869 original size:41 final size:42
Alignment explanation
Indices: 72950824--72950926 Score: 122
Period size: 41 Copynumber: 2.5 Consensus size: 42
72950814 CGCACGTTTG
* * * *
72950824 CTTGAAGACCGTGGATCCACCA-ATTGAGGATTGTAT-AGTTA
1 CTTGATGACCGTGGATCCACCAGATTAAGGATCGCATCA-TTA
* *
72950865 CTTGATGATCGTGGATCCA-CAGATTAAGGATCGCATCATTT
1 CTTGATGACCGTGGATCCACCAGATTAAGGATCGCATCATTA
72950906 CTTGATGACCGTGGATCCACC
1 CTTGATGACCGTGGATCCACC
72950927 GGTGGCTTTT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
40 2 0.04
41 48 0.92
42 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (42 bp):
CTTGATGACCGTGGATCCACCAGATTAAGGATCGCATCATTA
Found at i:72951121 original size:22 final size:21
Alignment explanation
Indices: 72951070--72951133 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
72951060 CCAATTATTT
*
72951070 TGATTATGGCTTTTCGCCAACC
1 TGATTATGGCTTAT-GCCAACC
*
72951092 T-ACATATGGCTGTATGCCAACC
1 TGA-TTATGGCT-TATGCCAACC
*
72951114 TGATTATGGCTATGTGCCAA
1 TGATTATGGCT-TATGCCAA
72951134 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 1 0.03
22 30 0.88
23 3 0.09
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.33
Consensus pattern (21 bp):
TGATTATGGCTTATGCCAACC
Found at i:72952408 original size:31 final size:31
Alignment explanation
Indices: 72952372--72952448 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 31
72952362 TTTGGAAAAT
*
72952372 CACACGCCCGTGTGGGTAGGCCGTGTGGTCA
1 CACACGCCCGTGTGGATAGGCCGTGTGGTCA
* * *
72952403 CACACGCCCGTATGCATCGGCCGTGTGGTCA
1 CACACGCCCGTGTGGATAGGCCGTGTGGTCA
*
72952434 CACAGGCCCGTGTGG
1 CACACGCCCGTGTGG
72952449 CCTGGGACAC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.14, C:0.32, G:0.35, T:0.18
Consensus pattern (31 bp):
CACACGCCCGTGTGGATAGGCCGTGTGGTCA
Found at i:72956416 original size:49 final size:49
Alignment explanation
Indices: 72956360--72956670 Score: 527
Period size: 49 Copynumber: 6.4 Consensus size: 49
72956350 TACATATATG
* * *
72956360 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
72956409 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGGATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
72956458 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
72956507 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
*
72956555 TGTGATGAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
72956603 TGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
72956652 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
72956671 TAATGTAAAA
Statistics
Matches: 248, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
47 14 0.06
48 64 0.26
49 170 0.69
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:72956625 original size:145 final size:147
Alignment explanation
Indices: 72956360--72956675 Score: 546
Period size: 145 Copynumber: 2.2 Consensus size: 147
72956350 TACATATATG
*
72956360 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
72956425 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
72956490 GTGAAAGTGTATGTATA
131 GTGAAAGTGTATGTATA
* * *
72956507 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
*
72956571 GGCCGATGTG-TGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
66 GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
*
72956635 GTGAAAGTGTATGTATG
131 GTGAAAGTGTATGTATA
*
72956652 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
72956676 TAAAATATAT
Statistics
Matches: 160, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
145 90 0.56
146 32 0.20
147 38 0.24
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (147 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGGATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAAT
GTGAAAGTGTATGTATA
Found at i:72956822 original size:37 final size:37
Alignment explanation
Indices: 72956772--72956856 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
72956762 GGAATATGTT
*
72956772 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
72956809 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
72956846 CCGGGTAAGAC
1 CCGGGTAAGAC
72956857 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:72958929 original size:29 final size:29
Alignment explanation
Indices: 72958887--72959048 Score: 297
Period size: 29 Copynumber: 5.6 Consensus size: 29
72958877 AATGAATATG
*
72958887 GGCACTATGTGTGCGAGATCAGTAATTGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
72958916 GGCACTATGTGTGCGAGATCAGTAATCGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
72958945 GGCACTATGTGTGCGAGATCAGTAATCGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
72958974 GGCACTATGTGTGCGAGATCAGTAATCGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
*
72959003 GGCACTATGTGTGCGAGATCAGTAATTGA
1 GGCACTATGTGTGCGAGATCAGTAATCGA
*
72959032 GGCACTGTGTGTGCGAG
1 GGCACTATGTGTGCGAG
72959049 TTTTTCAACA
Statistics
Matches: 130, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 130 1.00
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (29 bp):
GGCACTATGTGTGCGAGATCAGTAATCGA
Found at i:72959630 original size:40 final size:41
Alignment explanation
Indices: 72959532--72959630 Score: 114
Period size: 41 Copynumber: 2.4 Consensus size: 41
72959522 TTCGAATGGT
* ** * *
72959532 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTTACTAA
1 ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
72959573 ATCCGGGCTAAT-TCCCGAAGGCAATTGTGCGAA-TAACTATA
1 ATCCGGGCT-ATGTCCCGAAGGCAATTGTGCGAAGTAACTA-A
72959614 A-CCGGGCTATGTCCCGA
1 ATCCGGGCTATGTCCCGA
72959631 GGACAATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 2 0.04
40 18 0.36
41 29 0.58
42 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (41 bp):
ATCCGGGCTATGTCCCGAAGGCAATTGTGCGAAGTAACTAA
Found at i:72962430 original size:49 final size:49
Alignment explanation
Indices: 72962353--72962614 Score: 438
Period size: 49 Copynumber: 5.4 Consensus size: 49
72962343 TACATATATG
* * *
72962353 TGTGATAAGG-CGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
72962401 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* *
72962449 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
72962498 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
* * *
72962547 TGTGATGAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATG
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
72962596 TGTGATAAGGCCTAATGGC
1 TGTGATAAGGCCTAATGGC
72962615 TAATGTAAAA
Statistics
Matches: 201, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
48 56 0.28
49 145 0.72
ACGTcount: A:0.29, C:0.09, G:0.33, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
Found at i:72962603 original size:98 final size:97
Alignment explanation
Indices: 72962365--72962614 Score: 455
Period size: 97 Copynumber: 2.6 Consensus size: 97
72962355 TGATAAGGCG
* * *
72962365 AATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
72962430 AATGTGAAAGTGATGTATATGTGATGAGGCCT
66 AATGTGAAAGTGATGTATATGTGATGAGGCCT
72962462 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
72962527 AATGTGAAAGTGTATGTATATGTGATGAGGCCT
66 AATGTGAAAGTG-ATGTATATGTGATGAGGCCT
*
72962560 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATGTGTGATAAGGCCTAATGGC
1 AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
72962615 TAATGTAAAA
Statistics
Matches: 148, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
97 74 0.50
98 74 0.50
ACGTcount: A:0.29, C:0.09, G:0.32, T:0.30
Consensus pattern (97 bp):
AATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGATGTATATGTGATGAGGCCT
Found at i:72962645 original size:146 final size:145
Alignment explanation
Indices: 72962353--72962667 Score: 411
Period size: 146 Copynumber: 2.2 Consensus size: 145
72962343 TACATATATG
72962353 TGTGATAAGG-CGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* * ** *
72962417 GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAATG
66 GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATAAGGCCTAATGGCCAATGT-GAAAATA
*
72962482 TGAAAGTGTATGTATA
130 TGAAAGTGTATGCATA
* * * *
72962498 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATGAGGCCTAAT
1 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
* * *
72962563 GGCCGATGTGGTGAATGTGAAAGTGTATGTATGTGTGATAAGGCCTAATGGCTAATGT-AAAATA
66 GGCCGATGTGATGAATGTGAAAGTG-ATGTATATGTGATAAGGCCTAATGGCCAATGTGAAAATA
**
72962627 T-ATGTGTGATATGCATA
130 TGA-AAGTG-TATGCATA
* * *
72962644 TGTGGTAAAGCCGAATGGCTAATG
1 TGTGATAAGGCCGAATGGCCAATG
72962668 TGAATATTGT
Statistics
Matches: 146, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
144 1 0.01
145 17 0.12
146 100 0.68
147 28 0.19
ACGTcount: A:0.30, C:0.09, G:0.31, T:0.30
Consensus pattern (145 bp):
TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGATGTATATGTGATAAGGCCTAATGGCCAATGTGAAAATAT
GAAAGTGTATGCATA
Found at i:72962766 original size:37 final size:37
Alignment explanation
Indices: 72962716--72962800 Score: 152
Period size: 37 Copynumber: 2.3 Consensus size: 37
72962706 GGAATATGTT
*
72962716 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
*
72962753 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
72962790 CCGGGTAAGAC
1 CCGGGTAAGAC
72962801 TTCTTTTATA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:72973109 original size:39 final size:39
Alignment explanation
Indices: 72973065--72973216 Score: 241
Period size: 39 Copynumber: 3.9 Consensus size: 39
72973055 TACCAGTACA
* *
72973065 AAGCCTGCGGGACTTTAACCCGGATACATTTCCCGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
72973104 AAGCCTGCGGGACTTTGGCCCGGATACATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
* * *
72973143 AAGCCTGCGGGACTTTGGCCCAGATATATTTCCAGCACG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
*
72973182 AAGCCTGCGAGACTTTAGCCCGGATACATTTCCAG
1 AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAG
72973217 TGTCTTGCAT
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 104 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (39 bp):
AAGCCTGCGGGACTTTAGCCCGGATACATTTCCAGCACG
Found at i:72976149 original size:40 final size:40
Alignment explanation
Indices: 72976094--72976274 Score: 276
Period size: 40 Copynumber: 4.5 Consensus size: 40
72976084 CATTTGAATG
72976094 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
72976134 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
72976174 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
72976214 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
72976254 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
72976275 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 117 0.90
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:72984140 original size:40 final size:40
Alignment explanation
Indices: 72984085--72984225 Score: 169
Period size: 40 Copynumber: 3.5 Consensus size: 40
72984075 CATTTGAATG
* *
72984085 ATATCTGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
72984125 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
72984165 ATGTCCGGGTTAAGACCCAAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
72984205 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
72984226 AAACTTGGGT
Statistics
Matches: 86, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
38 1 0.01
39 11 0.13
40 74 0.86
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:72990322 original size:42 final size:41
Alignment explanation
Indices: 72990276--72990395 Score: 123
Period size: 42 Copynumber: 2.9 Consensus size: 41
72990266 CTTACATGAG
* *
72990276 ATCTCACATTGATGTCATATTCCAGATATGGTCTTATACAAA
1 ATCTCA-ATTGATGCCATATCCCAGATATGGTCTTATACAAA
* * * * * *
72990318 ATCTCATTTCGACGCCATGTCCCAAACATGGTCTTATACGAA
1 ATCTCAATT-GATGCCATATCCCAGATATGGTCTTATACAAA
**
72990360 ATCTCATATCAATGCCATATCCCAGATATGGTCTTA
1 ATCTCA-ATTGATGCCATATCCCAGATATGGTCTTA
72990396 CATGATAACA
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
41 2 0.03
42 58 0.95
43 1 0.02
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (41 bp):
ATCTCAATTGATGCCATATCCCAGATATGGTCTTATACAAA
Found at i:73002294 original size:28 final size:27
Alignment explanation
Indices: 73002229--73002302 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
73002219 AGGAAGCATC
* **
73002229 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACATTTATCTGAT
73002256 CTGGTGGCTCTGCCACATTTATCTGTAT
1 CTGGTGGCTCTGCCACATTTATCTG-AT
* *
73002284 CTGGTGACTCTGTCACATT
1 CTGGTGGCTCTGCCACATT
73002303 GTAATATCCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGAT
Found at i:73003159 original size:28 final size:30
Alignment explanation
Indices: 73003114--73003171 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 30
73003104 TTCCCGAGCC
73003114 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
73003144 TAGGGG-AAAA-TGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
73003172 CGTATTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 16 0.62
29 4 0.15
30 6 0.23
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:73018919 original size:21 final size:20
Alignment explanation
Indices: 73018891--73018932 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
73018881 TCTTTAAAAC
73018891 AGGGAACACGCACGTATGGA
1 AGGGAACACGCACGTATGGA
* *
73018911 AGGGTAACACGCTCGTGTGGA
1 AGGG-AACACGCACGTATGGA
73018932 A
1 A
73018933 TTAATTTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.31, C:0.19, G:0.36, T:0.14
Consensus pattern (20 bp):
AGGGAACACGCACGTATGGA
Found at i:73024356 original size:18 final size:18
Alignment explanation
Indices: 73024315--73024370 Score: 51
Period size: 18 Copynumber: 3.2 Consensus size: 18
73024305 AAATTAACAC
73024315 AGTTCACCAAAATAATAT
1 AGTTCACCAAAATAATAT
* **
73024333 AATTCACCAAGTTAATAT
1 AGTTCACCAAAATAATAT
* * *
73024351 GGTTCA-CAATATAACAT
1 AGTTCACCAAAATAATAT
73024368 AGT
1 AGT
73024371 ACACATATAT
Statistics
Matches: 29, Mismatches: 9, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (18 bp):
AGTTCACCAAAATAATAT
Found at i:73033794 original size:40 final size:40
Alignment explanation
Indices: 73033748--73033843 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
73033738 GGCGTTTGAA
*
73033748 TAAAAAATGCCGCTAAAGAGCAAGCATTAGCGGT-GCTTTT
1 TAAAAAACGCCGCTAAAGAGCAAGCATTAGC-GTCGCTTTT
* * * *
73033788 TCAAAAACGCCGCTATAGATCGAGCATTAGCGTCGCTTTT
1 TAAAAAACGCCGCTAAAGAGCAAGCATTAGCGTCGCTTTT
*
73033828 TAAAAAAACGCAGCTA
1 T-AAAAAACGCCGCTA
73033844 TAGGAACACC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
39 2 0.04
40 33 0.70
41 12 0.26
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (40 bp):
TAAAAAACGCCGCTAAAGAGCAAGCATTAGCGTCGCTTTT
Found at i:73034002 original size:40 final size:40
Alignment explanation
Indices: 73033958--73034036 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 40
73033948 GCACCGCTAT
* *
73033958 AGATCGAGTATTAGCAGCGCTTACTGAAAAACGCCACTAA
1 AGATCGAGCATTAGCAGCACTTACTGAAAAACGCCACTAA
* * * *
73033998 AGATCGAGCATTAGCGGCACTTTCTTAAAAACGCTACTA
1 AGATCGAGCATTAGCAGCACTTACTGAAAAACGCCACTA
73034037 TAGGTCCACC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (40 bp):
AGATCGAGCATTAGCAGCACTTACTGAAAAACGCCACTAA
Found at i:73034077 original size:193 final size:193
Alignment explanation
Indices: 73033790--73034141 Score: 449
Period size: 193 Copynumber: 1.8 Consensus size: 193
73033780 GTGCTTTTTC
* * * * *
73033790 AAAAACGCCGCTATAGATCGAGCATTAGCGTCGCTTTTTAAAAAAACGCAGCTATAGGAACACCT
1 AAAAACGCCACTAAAGATCGAGCATTAGCGGCACTTTTT-AAAAAACGCAGCTATAGGAACACCA
* * *
73033855 TTAGAGGCGCTTTTTAAAAACACCGCAAAAAATTATGCGCAACGCCGTCATTCTATACTGAGC-T
65 TTAGAGGCGCTTTTTAAAAACACCGCAAAAAATTATGCACAACGCCGCCATTCTATAC-AAGCTT
73033919 TTAGTGGCATTAGCGACGCTTTTAAAAAAGCACCGCTATAGATCGAGTATTAGCAGCGCTTACTG
129 TTAGTGGCATTAGCGACGCTTTTAAAAAAGCACCGCTATAGATCGAGTATTAGCAGCGCTTACTG
**
73033984 AAAAACGCCACTAAAGATCGAGCATTAGCGGCACTTTCTT-AAAAACGCTA-CTATAGGTCCACC
1 AAAAACGCCACTAAAGATCGAGCATTAGCGGCACTTT-TTAAAAAACGC-AGCTATAGGAACACC
* * * * * * * *
73034047 ATTCGCGGCGCTTTTTTAAAGCACCGCAAAAGATTATGCACAACGTCGCCGTTTTATACAAGCTT
64 ATTAGAGGCGCTTTTTAAAAACACCGCAAAAAATTATGCACAACGCCGCCATTCTATACAAGCTT
* * * *
73034112 TTAGTGGCTTTAGCGGCGTTTTTCAAAAAG
129 TTAGTGGCATTAGCGACGCTTTTAAAAAAG
73034142 AGCCGCAAAA
Statistics
Matches: 133, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
192 3 0.02
193 94 0.71
194 34 0.26
195 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (193 bp):
AAAAACGCCACTAAAGATCGAGCATTAGCGGCACTTTTTAAAAAACGCAGCTATAGGAACACCAT
TAGAGGCGCTTTTTAAAAACACCGCAAAAAATTATGCACAACGCCGCCATTCTATACAAGCTTTT
AGTGGCATTAGCGACGCTTTTAAAAAAGCACCGCTATAGATCGAGTATTAGCAGCGCTTACTG
Found at i:73034420 original size:7 final size:7
Alignment explanation
Indices: 73034399--73034513 Score: 56
Period size: 7 Copynumber: 16.4 Consensus size: 7
73034389 TTAATTATCA
*
73034399 TTATAGT
1 TTATGGT
*
73034406 TTAGGGT
1 TTATGGT
73034413 TTATGGT
1 TTATGGT
*
73034420 TTAGGGT
1 TTATGGT
*
73034427 ATATGGT
1 TTATGGT
*
73034434 TTAAGGT
1 TTATGGT
*
73034441 TTAAGGT
1 TTATGGT
*
73034448 TTAAGGT
1 TTATGGT
*
73034455 TTAGGAGT
1 TTATG-GT
73034463 TACTAT--T
1 T--TATGGT
*
73034470 TTAAGGT
1 TTATGGT
**
73034477 TTATGAA
1 TTATGGT
73034484 TTATGG-
1 TTATGGT
* * *
73034490 GTAGGGA
1 TTATGGT
73034497 TTATGGT
1 TTATGGT
73034504 TTATGGT
1 TTATGGT
73034511 TTA
1 TTA
73034514 ACAATTGGGG
Statistics
Matches: 82, Mismatches: 20, Indels: 12
0.72 0.18 0.11
Matches are distributed among these distances:
5 2 0.02
6 4 0.05
7 71 0.87
8 3 0.04
10 2 0.02
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:73034421 original size:14 final size:14
Alignment explanation
Indices: 73034399--73034457 Score: 73
Period size: 14 Copynumber: 4.2 Consensus size: 14
73034389 TTAATTATCA
* *
73034399 TTATAGTTTAGGGT
1 TTATGGTTTAAGGT
*
73034413 TTATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
73034427 ATATGGTTTAAGGT
1 TTATGGTTTAAGGT
*
73034441 TTAAGGTTTAAGGT
1 TTATGGTTTAAGGT
73034455 TTA
1 TTA
73034458 GGAGTTACTA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 40 1.00
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:73034450 original size:35 final size:36
Alignment explanation
Indices: 73034404--73034514 Score: 97
Period size: 35 Copynumber: 3.2 Consensus size: 36
73034394 TATCATTATA
*
73034404 GTTTAGGGTTTATGGTTTAGGGTA-TATGGTTTAAG
1 GTTTAAGGTTTATGGTTTAGGGTACTATGGTTTAAG
*
73034439 GTTTAAGGTTTAAGGTTTAGGAGTTACTAT--TTTAAG
1 GTTTAAGGTTTATGGTTTAGG-G-TACTATGGTTTAAG
* ** * * *
73034475 GTTTATGAATTATGG-GTAGGG-ATTATGGTTTATG
1 GTTTAAGGTTTATGGTTTAGGGTACTATGGTTTAAG
73034509 GTTTAA
1 GTTTAA
73034515 CAATTGGGGT
Statistics
Matches: 61, Mismatches: 10, Indels: 11
0.74 0.12 0.13
Matches are distributed among these distances:
32 4 0.07
34 11 0.18
35 23 0.38
36 18 0.30
37 2 0.03
38 3 0.05
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (36 bp):
GTTTAAGGTTTATGGTTTAGGGTACTATGGTTTAAG
Found at i:73034538 original size:14 final size:14
Alignment explanation
Indices: 73034521--73034683 Score: 57
Period size: 14 Copynumber: 11.5 Consensus size: 14
73034511 TTAACAATTG
73034521 GGGTTTAAGGTTTA
1 GGGTTTAAGGTTTA
*
73034535 GGG-TTAAGGGTTAA
1 GGGTTTAA-GGTTTA
73034549 GGG-TTAAGAG-TTA
1 GGGTTTAAG-GTTTA
*
73034562 GAGGTTTATGGTTTA
1 G-GGTTTAAGGTTTA
* *
73034577 GAGG-CTAAGGTTGA
1 G-GGTTTAAGGTTTA
* * ** *
73034591 TGTTTTGTGATTTA
1 GGGTTTAAGGTTTA
**
73034605 GGACTTAAGGGTTTA
1 GGGTTTAA-GGTTTA
73034620 GGGTTT-AGGATTTA
1 GGGTTTAAGG-TTTA
* *
73034634 AGGTTTAAAGTTTA
1 GGGTTTAAGGTTTA
** * **
73034648 GTATTTAGGGGATA
1 GGGTTTAAGGTTTA
*
73034662 GGGGTTAGAGGTTTA
1 GGGTTTA-AGGTTTA
73034677 GGGTTTA
1 GGGTTTA
73034684 GATTAATTAG
Statistics
Matches: 102, Mismatches: 37, Indels: 19
0.65 0.23 0.12
Matches are distributed among these distances:
13 11 0.11
14 59 0.58
15 32 0.31
ACGTcount: A:0.25, C:0.01, G:0.36, T:0.39
Consensus pattern (14 bp):
GGGTTTAAGGTTTA
Found at i:73034545 original size:21 final size:21
Alignment explanation
Indices: 73034521--73034586 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
73034511 TTAACAATTG
73034521 GGGTTTAAGGTTTAGGGTTAA
1 GGGTTTAAGGTTTAGGGTTAA
* *
73034542 GGG-TTAAGGGTTAAGAGTT-A
1 GGGTTTAA-GGTTTAGGGTTAA
* *
73034562 GAGGTTTATGGTTTAGAGGCTAA
1 G-GGTTTAAGGTTTAG-GGTTAA
73034585 GG
1 GG
73034587 TTGATGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 9
0.69 0.12 0.18
Matches are distributed among these distances:
20 6 0.18
21 20 0.59
22 6 0.18
23 2 0.06
ACGTcount: A:0.26, C:0.02, G:0.39, T:0.33
Consensus pattern (21 bp):
GGGTTTAAGGTTTAGGGTTAA
Found at i:73034624 original size:7 final size:7
Alignment explanation
Indices: 73034612--73034684 Score: 56
Period size: 7 Copynumber: 10.3 Consensus size: 7
73034602 TTAGGACTTA
73034612 AGGGTTT
1 AGGGTTT
73034619 AGGGTTT
1 AGGGTTT
*
73034626 AGGATTT
1 AGGGTTT
*
73034633 AAGGTTT
1 AGGGTTT
**
73034640 AAAGTTT
1 AGGGTTT
**
73034647 AGTATTT
1 AGGGTTT
**
73034654 AGGGGAT
1 AGGGTTT
*
73034661 AGGGGTT
1 AGGGTTT
73034668 AGAGGTTT
1 AG-GGTTT
73034676 AGGGTTT
1 AGGGTTT
73034683 AG
1 AG
73034685 ATTAATTAGT
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 46 0.88
8 6 0.12
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (7 bp):
AGGGTTT
Found at i:73034640 original size:21 final size:22
Alignment explanation
Indices: 73034601--73034654 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
73034591 TGTTTTGTGA
* **
73034601 TTTAGGACTTAAGGGTTTAGGG
1 TTTAGGATTTAAGGGTTTAAAG
73034623 TTTAGGATTTAA-GGTTTAAAG
1 TTTAGGATTTAAGGGTTTAAAG
*
73034644 TTTAGTATTTA
1 TTTAGGATTTA
73034655 GGGGATAGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 17 0.61
22 11 0.39
ACGTcount: A:0.28, C:0.02, G:0.26, T:0.44
Consensus pattern (22 bp):
TTTAGGATTTAAGGGTTTAAAG
Found at i:73035124 original size:21 final size:21
Alignment explanation
Indices: 73035098--73035139 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
73035088 ATTAACATTT
* * *
73035098 ATCATTAGTATTAATAATTAA
1 ATCATTAATATAAAGAATTAA
73035119 ATCATTAATATAAAGAATTAA
1 ATCATTAATATAAAGAATTAA
73035140 TTCAACGAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
ATCATTAATATAAAGAATTAA
Found at i:73035445 original size:73 final size:74
Alignment explanation
Indices: 73035329--73035480 Score: 229
Period size: 73 Copynumber: 2.1 Consensus size: 74
73035319 GCAAAAAACA
* *
73035329 TAATAGTTTAACGAAAAAGGCATCGTTTTAATTGGAGATTTAGGGGATTAGCGGTGTTCTTTTAG
1 TAATAGTTTAACGAAAAAGGCATCGTTTTAATTGGAGACTTAGGGGATTAGCGGCGTT-TTTTA-
73035394 AAAAAA-ATT-
64 AAAAAACATTG
* *
73035403 TAATAGTTTAACG-AAAAGGCATTGTTTTAATTGGAGACTTAGGGGATTAGTGGCGTTTTTTAAA
1 TAATAGTTTAACGAAAAAGGCATCGTTTTAATTGGAGACTTAGGGGATTAGCGGCGTTTTTTAAA
73035467 AAAACATTG
66 AAAACATTG
73035476 TAATA
1 TAATA
73035481 TATTGGCTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
71 6 0.08
72 8 0.11
73 45 0.62
74 13 0.18
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.36
Consensus pattern (74 bp):
TAATAGTTTAACGAAAAAGGCATCGTTTTAATTGGAGACTTAGGGGATTAGCGGCGTTTTTTAAA
AAAACATTG
Found at i:73045571 original size:26 final size:26
Alignment explanation
Indices: 73045510--73045572 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
73045500 TTTTACTAAA
* * *
73045510 ATACCCCTAAGTATAAAATTACCATT
1 ATACCCCTAGGTACAAAATAACCATT
* *
73045536 TTACCCCTAGGTGCAAAATAACCATT
1 ATACCCCTAGGTACAAAATAACCATT
73045562 ATACCCCTAGG
1 ATACCCCTAGG
73045573 GTTAATTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.27
Consensus pattern (26 bp):
ATACCCCTAGGTACAAAATAACCATT
Found at i:73045916 original size:20 final size:21
Alignment explanation
Indices: 73045872--73045917 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
73045862 ACTGTTTTGT
73045872 TATGGG-CCAACTATATTGAA
1 TATGGGCCCAACTATATTGAA
* *
73045892 -GTGGGCCCAACTATGTT-AA
1 TATGGGCCCAACTATATTGAA
73045911 TATGGGC
1 TATGGGC
73045918 AAGGCCCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTATATTGAA
Found at i:73045987 original size:60 final size:59
Alignment explanation
Indices: 73045910--73046046 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
73045900 AACTATGTTA
* *
73045910 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACAGCCCAGATTAATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACAGCCCAAATTAATACTG
* ** *
73045970 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAAATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACAGCCCAAATTAATACTG
73046030 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
73046047 GTTAACACTA
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 51 0.76
61 15 0.22
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACAGCCCAAATTAATACTG
Found at i:73047455 original size:21 final size:23
Alignment explanation
Indices: 73047415--73047461 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
73047405 CCATTTTATA
73047415 TGTTAAATGCTGAAAATTTA-GG
1 TGTTAAATGCTGAAAATTTATGG
*
73047437 TGTTAAATGCTG-CAATTTATGG
1 TGTTAAATGCTGAAAATTTATGG
73047459 TGT
1 TGT
73047462 CTGAAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.30, C:0.06, G:0.23, T:0.40
Consensus pattern (23 bp):
TGTTAAATGCTGAAAATTTATGG
Found at i:73051262 original size:39 final size:39
Alignment explanation
Indices: 73051208--73051399 Score: 321
Period size: 39 Copynumber: 4.9 Consensus size: 39
73051198 GAATGTTCGA
73051208 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
*
73051247 ATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
73051286 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* *
73051325 ATGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
* * *
73051364 GTGATATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCG
73051400 GGTTACCATA
Statistics
Matches: 144, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 127 0.88
40 17 0.12
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.21
Consensus pattern (39 bp):
ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGCT
Found at i:73053044 original size:27 final size:29
Alignment explanation
Indices: 73053014--73053128 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
73053004 ACGCAAGAGC
*
73053014 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
73053041 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
73053070 ATATAATTTTCAGCTCGCACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * ** *
73053100 ATATGTTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
73053129 GTACAATTTT
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 42 0.53
30 29 0.37
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:73053081 original size:30 final size:29
Alignment explanation
Indices: 73053026--73053128 Score: 179
Period size: 29 Copynumber: 3.5 Consensus size: 29
73053016 ATAGTGAATC
73053026 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
73053055 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* *
73053085 CGCACACTTAGTGCTATATGTTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
73053114 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73053129 GTACAATTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
29 42 0.59
30 29 0.41
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:73053118 original size:59 final size:60
Alignment explanation
Indices: 73053025--73053158 Score: 198
Period size: 59 Copynumber: 2.2 Consensus size: 60
73053015 TATAGTGAAT
* * *
73053025 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA-TTTTCAGC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
* * * *
73053084 TCGCACACTTAGTGCTATATGTTTTCAGTTCGCACACTTAGTGCTGTACAATTTTTAAAC
1 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
73053144 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
73053159 CAATCTTGTC
Statistics
Matches: 66, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
59 46 0.70
60 20 0.30
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (60 bp):
CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATACAATTTTTAAAC
Found at i:73059977 original size:27 final size:29
Alignment explanation
Indices: 73059947--73060061 Score: 90
Period size: 29 Copynumber: 4.0 Consensus size: 29
73059937 ACGCAAGAGC
*
73059947 ATATA-GTGAATC-CGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* **
73059974 ATATATTTTCAGCTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
* ** *
73060003 ATATAATTTTCAGCTCACACACTTAGTGCT
1 ATAT-ATGTGAAGCTCGCACACTTAGTGCT
* * ** *
73060033 ATATGTTTTCAGTTCGCACACTTAGTGCT
1 ATATATGTGAAGCTCGCACACTTAGTGCT
73060062 GTACAATTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
27 5 0.06
28 3 0.04
29 41 0.53
30 28 0.36
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (29 bp):
ATATATGTGAAGCTCGCACACTTAGTGCT
Found at i:73060014 original size:30 final size:29
Alignment explanation
Indices: 73059959--73060061 Score: 170
Period size: 29 Copynumber: 3.5 Consensus size: 29
73059949 ATAGTGAATC
73059959 CGCACACTTAGTGCTATATATTTTCAGCT
1 CGCACACTTAGTGCTATATATTTTCAGCT
73059988 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATAT-ATTTTCAGCT
* * *
73060018 CACACACTTAGTGCTATATGTTTTCAGTT
1 CGCACACTTAGTGCTATATATTTTCAGCT
73060047 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
73060062 GTACAATTTT
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
29 41 0.59
30 28 0.41
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATATTTTCAGCT
Found at i:73062223 original size:14 final size:14
Alignment explanation
Indices: 73062204--73062233 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73062194 TGAAAAAAAT
73062204 AAAATATAAATCCC
1 AAAATATAAATCCC
*
73062218 AAAATATAAATTCC
1 AAAATATAAATCCC
73062232 AA
1 AA
73062234 TCCCATAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.17, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATATAAATCCC
Found at i:73064482 original size:35 final size:35
Alignment explanation
Indices: 73064442--73064548 Score: 110
Period size: 35 Copynumber: 3.1 Consensus size: 35
73064432 TATAGAGATC
*
73064442 AAGTCCATGGGGACAATAAACACAAAACAAGGATG
1 AAGTCCATAGGGACAATAAACACAAAACAAGGATG
* * * *
73064477 AAGTCCACAGGAACAATAAACACAAAATAGGGATG
1 AAGTCCATAGGGACAATAAACACAAAACAAGGATG
* * *
73064512 AAGTCCGTCA-GGATAGTAAACACAAAAC-AGAGATG
1 AAGTCCAT-AGGGACAATAAACACAAAACAAG-GATG
73064547 AA
1 AA
73064549 ATTCACCAAA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
34 1 0.02
35 56 0.97
36 1 0.02
ACGTcount: A:0.50, C:0.17, G:0.21, T:0.12
Consensus pattern (35 bp):
AAGTCCATAGGGACAATAAACACAAAACAAGGATG
Found at i:73066315 original size:91 final size:92
Alignment explanation
Indices: 73066160--73066362 Score: 257
Period size: 91 Copynumber: 2.2 Consensus size: 92
73066150 CTCCAATTTT
* * * **
73066160 TGGATAAACCACCAGTGTTT-GCAGGTTAATACGCTGACATTAAGTTGTGAATGCATAATGTGTT
1 TGGATAAACCACCAGTGTTTAGCAAGTTAATACGCTGACAGTAAGTTGTGAATGCACAACCTGTT
*
73066224 TGTAGATAAAAACTACTAGTAAGTTTA
66 TGTAGATAAAAACTACCAGTAAGTTTA
* * * **
73066251 TGGATACACCACTAGTGTTTAG-AAGTTAATACGCTGCCAGTGGGTTGTGAATGCACAACCTGTT
1 TGGATAAACCACCAGTGTTTAGCAAGTTAATACGCTGACAGTAAGTTGTGAATGCACAACCTGTT
** *
73066315 TGTAGATAAAAGTTGCCAGTAAGTTTA
66 TGTAGATAAAAACTACCAGTAAGTTTA
*
73066342 TGGATAAACAACCAGTGTTTA
1 TGGATAAACCACCAGTGTTTA
73066363 CAGATAATTA
Statistics
Matches: 94, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
91 93 0.99
92 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (92 bp):
TGGATAAACCACCAGTGTTTAGCAAGTTAATACGCTGACAGTAAGTTGTGAATGCACAACCTGTT
TGTAGATAAAAACTACCAGTAAGTTTA
Found at i:73073024 original size:137 final size:137
Alignment explanation
Indices: 73072776--73073049 Score: 521
Period size: 137 Copynumber: 2.0 Consensus size: 137
73072766 CTGAAATTTT
*
73072776 TTCTTTATCATTCATCTCAGGGCAATCCTTAATAAAGTGGTCTTGAGAACCACACCAAAAACAAG
1 TTCTTTATCATTCATCTCAAGGCAATCCTTAATAAAGTGGTCTTGAGAACCACACCAAAAACAAG
* *
73072841 ATCCATCGTTTATTCTACACTTGCTGAAATGATTTCAACCATAATGCTGGCATTCTGGTTTGGAA
66 ATCCATCGTTCATTCTACACTTGCTGAAATGATTTCAACCACAATGCTGGCATTCTGGTTTGGAA
73072906 GATCTAA
131 GATCTAA
73072913 TTCTTTATCATTCATCTCAAGGCAATCCTTAATAAAGTGGTCTTGAGAACCACACCAAAAACAAG
1 TTCTTTATCATTCATCTCAAGGCAATCCTTAATAAAGTGGTCTTGAGAACCACACCAAAAACAAG
73072978 ATCCATCGTTCATTCTACACTTGCTGAAATGATTTCAACCACAATGCTGGCATTCTGGTTTGGAA
66 ATCCATCGTTCATTCTACACTTGCTGAAATGATTTCAACCACAATGCTGGCATTCTGGTTTGGAA
73073043 GATCTAA
131 GATCTAA
73073050 CATTGCCCAT
Statistics
Matches: 134, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 134 1.00
ACGTcount: A:0.32, C:0.22, G:0.15, T:0.31
Consensus pattern (137 bp):
TTCTTTATCATTCATCTCAAGGCAATCCTTAATAAAGTGGTCTTGAGAACCACACCAAAAACAAG
ATCCATCGTTCATTCTACACTTGCTGAAATGATTTCAACCACAATGCTGGCATTCTGGTTTGGAA
GATCTAA
Found at i:73079277 original size:17 final size:18
Alignment explanation
Indices: 73079235--73079283 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
73079225 AGTTGAAAAG
73079235 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
73079254 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
73079271 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
73079284 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:73080172 original size:40 final size:40
Alignment explanation
Indices: 73080106--73080272 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73080096 AAATTGAATG
* * *
73080106 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
73080145 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
73080185 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73080225 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73080265 ATATCCGG
1 ATATCCGG
73080273 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73087284 original size:17 final size:18
Alignment explanation
Indices: 73087242--73087290 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
73087232 AGTTGAAAAG
73087242 GAGCATGATTGTCATACTT
1 GAGCATGA-TGTCATACTT
*
73087261 G-GCCATGATG-CATTCTT
1 GAG-CATGATGTCATACTT
73087278 GAGCATGAT-TCAT
1 GAGCATGATGTCAT
73087291 GCTTCTTGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 16 0.62
18 4 0.15
19 6 0.23
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.35
Consensus pattern (18 bp):
GAGCATGATGTCATACTT
Found at i:73088178 original size:40 final size:40
Alignment explanation
Indices: 73088112--73088278 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
73088102 AAATTGAATG
* * *
73088112 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
73088151 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
73088191 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
73088231 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
73088271 ATATCCGG
1 ATATCCGG
73088279 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:73091392 original size:40 final size:40
Alignment explanation
Indices: 73091284--73091393 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
73091274 ATTGAATGAT
* * * * *
73091284 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
73091324 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
73091364 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
73091394 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:73091408 original size:40 final size:39
Alignment explanation
Indices: 73091284--73091433 Score: 133
Period size: 40 Copynumber: 3.8 Consensus size: 39
73091274 ATTGAATGAT
* * * * * * *
73091284 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
73091324 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
73091364 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
73091404 ATCCGGGTTAAGTCCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
73091434 GGGTTACCAT
Statistics
Matches: 92, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
40 86 0.93
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:73099436 original size:40 final size:40
Alignment explanation
Indices: 73099328--73099437 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
73099318 ATTGAATGAT
* * * * *
73099328 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
* * *
73099368 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
73099408 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
73099438 AAATTGTGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 60 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTAACTAC
Found at i:73099452 original size:40 final size:39
Alignment explanation
Indices: 73099328--73099476 Score: 124
Period size: 40 Copynumber: 3.8 Consensus size: 39
73099318 ATTGAATGAT
* * * * * * *
73099328 ATCCGGGCTAAGTCCCGAAGACATTTATGCTGGTAATTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGA-CAC
*
73099368 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTAC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGAC-AC
* *
73099408 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATTGTGA-A-
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC---TAGTGACAC
* *
73099448 ATCCGGGTTAAG-TCCGAAGGCCTTTGTGC
1 ATCCGGGTTAAGACCCGAAGGCATTTGTGC
73099477 GGGTTACCAT
Statistics
Matches: 91, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
39 15 0.16
40 70 0.77
41 1 0.01
43 5 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
ATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGACAC
Found at i:73105419 original size:47 final size:48
Alignment explanation
Indices: 73105347--73105469 Score: 164
Period size: 47 Copynumber: 2.6 Consensus size: 48
73105337 TAAGGTGCCG
73105347 ATGCCATGTCCCAAACATGGTCTTACACTGACTCA-CATCTC-AAGTCA
1 ATGCCATGTCCCAAACATGGTCTTACACTGACT-ATCATCTCGAAGTCA
* * * * *
73105394 ATGCCATGTCCTAGACATGGACTTACACTGACTATCATCTCGTAGTCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTCGAAGTCA
73105442 ATG-CATGTCCCAAACAT-GTCTTACACTG
1 ATGCCATGTCCCAAACATGGTCTTACACTG
73105470 GCTTACATTT
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 11 0.17
47 48 0.73
48 7 0.11
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (48 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGACTATCATCTCGAAGTCA
Found at i:73110249 original size:28 final size:26
Alignment explanation
Indices: 73110218--73110281 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 26
73110208 AACTCTTTCA
73110218 ATTTTC-TTTTCTCGTTCACATTCTTTTT
1 ATTTTCTTTTTCTC--TCA-ATTCTTTTT
*
73110246 ATTTCTCTTTTTCTCTCATTTCTTTTT
1 ATTT-TCTTTTTCTCTCAATTCTTTTT
*
73110273 TTTTTCTTT
1 ATTTTCTTT
73110282 CAATTTCTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
26 5 0.16
27 11 0.34
28 7 0.22
29 2 0.06
30 7 0.22
ACGTcount: A:0.08, C:0.20, G:0.02, T:0.70
Consensus pattern (26 bp):
ATTTTCTTTTTCTCTCAATTCTTTTT
Found at i:73113832 original size:7 final size:7
Alignment explanation
Indices: 73113817--73113847 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
73113807 GCACAGTTAG
73113817 CAATTCA
1 CAATTCA
*
73113824 CATTTCA
1 CAATTCA
73113831 CAATTCA
1 CAATTCA
73113838 CAATTCA
1 CAATTCA
73113845 CAA
1 CAA
73113848 ATAATATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (7 bp):
CAATTCA
Found at i:73120133 original size:23 final size:23
Alignment explanation
Indices: 73120107--73120186 Score: 92
Period size: 23 Copynumber: 3.6 Consensus size: 23
73120097 TATCAATTAT
*
73120107 GTTATGTTTTGATATGAAAATAA
1 GTTATGTTATGATATGAAAATAA
* * *
73120130 GTTATGTTATG-TAT-CAATTAT
1 GTTATGTTATGATATGAAAATAA
*
73120151 GTTATGTTTTGATATGAAAATAA
1 GTTATGTTATGATATGAAAATAA
*
73120174 GTTAAGTTATGAT
1 GTTATGTTATGAT
73120187 TATTTAAATA
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
21 14 0.31
22 6 0.13
23 25 0.56
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.46
Consensus pattern (23 bp):
GTTATGTTATGATATGAAAATAA
Found at i:73120142 original size:44 final size:44
Alignment explanation
Indices: 73120090--73120184 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
73120080 ATGGTGTGGT
73120090 TGTTATGTATCAATTATGTTATGTTTTGATATGAAAATAAGTTA
1 TGTTATGTATCAATTATGTTATGTTTTGATATGAAAATAAGTTA
73120134 TGTTATGTATCAATTATGTTATGTTTTGATATGAAAATAAGTTA
1 TGTTATGTATCAATTATGTTATGTTTTGATATGAAAATAAGTTA
*
73120178 AGTTATG
1 TGTTATG
73120185 ATTATTTAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.34, C:0.02, G:0.17, T:0.47
Consensus pattern (44 bp):
TGTTATGTATCAATTATGTTATGTTTTGATATGAAAATAAGTTA
Found at i:73122022 original size:48 final size:48
Alignment explanation
Indices: 73121886--73122024 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
73121876 AAATATTCCT
* * *
73121886 GTGTAAGACCATGTCCT-GGACATGGCATCGACGATGATATATGTGCCT
1 GTGTAAGACCATGT-CTGGGACATGGCATCAACGATGATATGTGTGCCA
* *
73121934 GTGTAAGACCATGTTTGGGACATGACATCAACGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCA
* *
73121982 GTGTAAGACAATGTCTGGGACATGGCATCAATGATGATATGTG
1 GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTG
73122025 GATTCATGTA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
47 1 0.01
48 80 0.99
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGTGCCA
Found at i:73122035 original size:48 final size:47
Alignment explanation
Indices: 73121887--73122053 Score: 160
Period size: 48 Copynumber: 3.5 Consensus size: 47
73121877 AATATTCCTG
* * * *
73121887 TGTAAGACCATGTCCT-GGACATGGCATCGACGATGATATAT-GTGCCTG
1 TGTAAGACCATGT-CTGGGACATGGCATCAACGATGATATGTGGT-TC-A
* * *
73121935 TGTAAGACCATGTTTGGGACATGACATCAACGATGATATGT-GTGCCA
1 TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGGT-TCA
* *
73121982 GTGTAAGACAATGTCTGGGACATGGCATCAATGATGATATGTGGATTCA
1 -TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGG-TTCA
* *
73122031 TGTAAGACCATGTCAGGTACATG
1 TGTAAGACCATGTCTGGGACATG
73122054 ACATTTATAC
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
47 1 0.01
48 97 0.95
49 3 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATGTGGTTCA
Found at i:73126849 original size:29 final size:27
Alignment explanation
Indices: 73126816--73126917 Score: 96
Period size: 29 Copynumber: 3.6 Consensus size: 27
73126806 ACTCAATCAT
*
73126816 GCACACTTAGTGCCATGTGATTCAAGCCC
1 GCACACTTAGTGCCAT-T-ATTCAAGCTC
* * *
73126845 GCACACATAGTGCCATATAGTCCAAACTC
1 GCACACTTAGTGCCAT-TA-TTCAAGCTC
*
73126874 GCACACTTAGTGCCATACATTACAAGCTC
1 GCACACTTAGTGCCAT-TATT-CAAGCTC
*
73126903 GCACACTCAGTGCCA
1 GCACACTTAGTGCCA
73126918 ATCTCGTCCC
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 59 0.97
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.22
Consensus pattern (27 bp):
GCACACTTAGTGCCATTATTCAAGCTC
Found at i:73133158 original size:27 final size:28
Alignment explanation
Indices: 73133122--73133188 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
73133112 AAAAATAGAT
* * *
73133122 AAATTTTAATTT-CCGA-GTCTAGGGGTA
1 AAATTGTAATTTGCAGAGGTCTA-GGGCA
*
73133149 AAATTGTAATTTGCAGAGGTTTAGGGCA
1 AAATTGTAATTTGCAGAGGTCTAGGGCA
73133177 AAATTGTAATTT
1 AAATTGTAATTT
73133189 TCAAAAGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.32
28 19 0.56
29 4 0.12
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (28 bp):
AAATTGTAATTTGCAGAGGTCTAGGGCA
Found at i:73133975 original size:47 final size:47
Alignment explanation
Indices: 73133912--73134033 Score: 208
Period size: 47 Copynumber: 2.6 Consensus size: 47
73133902 GCATTGGCAC
* *
73133912 TAAGACAAGGAAACCATGTAAGACCATGTTTGGACCATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
73133959 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
73134006 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
73134034 CCAAGGTATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:73134076 original size:54 final size:54
Alignment explanation
Indices: 73134012--73134409 Score: 374
Period size: 54 Copynumber: 7.5 Consensus size: 54
73134002 TTGGTAAGAT
* *
73134012 AAGGATATCATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
73134066 AAGGAAATCATGTAAGACAATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
** * * *
73134121 AAAGG-TCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGAC
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* *** * **
73134174 AAGGATACCATGTAAGACCATG-TTTGGAACGTGGCATT--TG-G-----TAAGAT
1 AAGGATATCATGTAAGACCATGCCAAGG--CATGGCATTGATGAGTTCTATAAGGC
*
73134221 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * * *
73134275 AAGGAAATCATCTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTT-CTATAAGGC
* * *
73134330 AAAGG-T-TCCATGTAAGACCATGCTAAGGCATGACATTGGTGAGTTC-ATAAGGC
1 -AAGGATAT-CATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
* * *
73134383 AAGGATACCACGTAAGACCATGTCAAG
1 AAGGATATCATGTAAGACCATGCCAAG
73134410 AGATGACAAT
Statistics
Matches: 280, Mismatches: 45, Indels: 39
0.77 0.12 0.11
Matches are distributed among these distances:
46 8 0.03
47 26 0.09
48 3 0.01
49 1 0.00
51 1 0.00
52 12 0.04
53 45 0.16
54 94 0.34
55 82 0.29
56 8 0.03
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATGAGTTCTATAAGGC
Found at i:73134211 original size:109 final size:108
Alignment explanation
Indices: 73134020--73134410 Score: 478
Period size: 109 Copynumber: 3.7 Consensus size: 108
73134010 ATAAGGATAT
* * *
73134020 CATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACA
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
73134085 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGT-C
* * * * *
73134129 CATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGACAAGGATACCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*** * ** *
73134193 ATGTTTGGAACGTGGCATT--TG-G-TAAGATAAGG-ATA--T-
66 ATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGCAAAGGTC
* *
73134229 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
73134294 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTTC
66 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TC
* * * * * *
73134338 CATGTAAGACCATGCTAAGGCATGACATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
73134402 ATGTCAAGA
66 ATGTCAAGA
73134411 GATGACAATG
Statistics
Matches: 234, Mismatches: 37, Indels: 23
0.80 0.13 0.08
Matches are distributed among these distances:
100 44 0.19
101 27 0.12
102 3 0.01
103 1 0.00
104 10 0.04
105 10 0.04
106 1 0.00
107 2 0.01
108 59 0.25
109 77 0.33
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTC
Found at i:73134309 original size:100 final size:105
Alignment explanation
Indices: 73133959--73134410 Score: 435
Period size: 109 Copynumber: 4.3 Consensus size: 105
73133949 TGGCATTTGG
* * *** *
73133959 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATT-TG-G-TAAGATAAGG-ATA-
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAG-ACATGGCATTATGAGTTAAGATAAGGCAAAG
* * *
73134019 T-CATGTAAGACCATGCCAAGGTATGGCATTGATAAGTTCTA
65 TCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
* * * * **
73134060 TAAGGCAAGGAAATCATGTAAGACAATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAGACATGGCATT-ATGAGTTAAGATAAGGCAAA-
*
73134125 GTCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTCA
64 GT-CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
* * *** * *
73134168 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACGTGGCATT-TG-G-TAAGATAAGG-ATA-
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAG-ACATGGCATTATGAGTTAAGATAAGGCAAAG
* *
73134228 T-CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTA
65 TCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-A
* * **
73134269 TAAGGCAAGGAAATCATCTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 TAAGGCAAGGATACCATCTAAGACCATGTCAAGACATGGCATT-ATGAGTTAAGATAAGGCAAA-
* *
73134334 GTTCCATGTAAGACCATGCTAAGGCATGACATTGGTGAGTTCA
64 G-TCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
73134377 TAAGGCAAGGATACCA-CGTAAGACCATGTCAAGA
1 TAAGGCAAGGATACCATC-TAAGACCATGTCAAGA
73134411 GATGACAATG
Statistics
Matches: 285, Mismatches: 45, Indels: 35
0.78 0.12 0.10
Matches are distributed among these distances:
100 54 0.19
101 53 0.19
102 5 0.02
103 2 0.01
104 18 0.06
105 12 0.04
106 1 0.00
107 4 0.01
108 59 0.21
109 77 0.27
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.24
Consensus pattern (105 bp):
TAAGGCAAGGATACCATCTAAGACCATGTCAAGACATGGCATTATGAGTTAAGATAAGGCAAAGT
CCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
Found at i:73134319 original size:209 final size:209
Alignment explanation
Indices: 73133959--73134405 Score: 804
Period size: 209 Copynumber: 2.1 Consensus size: 209
73133949 TGGCATTTGG
73133959 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
* *
73134024 TAAGACCATGCCAAGGTATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACAATGT
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACAATGT
* *
73134089 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACTATGCCAAGGCATGG
131 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGA
73134154 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
*
73134168 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACGTGGCATTTGGTAAGATAAGGATATCATG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
*
73134233 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACCATGT
66 TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACAATGT
* *
73134298 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTTCCATGTAAGACCATGCTAAGGCATGA
131 CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGA
73134363 CATTGGTGAGTTCA
196 CATTGGTGAGTTCA
* *
73134377 TAAGGCAAGGATACCACGTAAGACCATGT
1 TAAGACAAGGATACCATGTAAGACCATGT
73134406 CAAGAGATGA
Statistics
Matches: 228, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
209 228 1.00
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (209 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGATAAGGATATCATG
TAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATCTAAGACAATGT
CAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGA
CATTGGTGAGTTCA
Found at i:73154048 original size:49 final size:49
Alignment explanation
Indices: 73153974--73154273 Score: 519
Period size: 49 Copynumber: 6.1 Consensus size: 49
73153964 GTACATAATA
* * *
73153974 ATATATGTGATAAGGCCTAATGGCCGATATGATAAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
73154023 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
73154072 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
73154121 ACATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
73154170 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* * * *
73154219 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAACGTGAAAGTGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
73154268 ATATAT
1 ATATAT
73154274 ATGTGGTAAA
Statistics
Matches: 240, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 240 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.30
Consensus pattern (49 bp):
ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:73157375 original size:27 final size:27
Alignment explanation
Indices: 73157321--73157431 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
73157311 AGCATGGCTG
* *
73157321 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
73157347 CCAGAGCAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
73157374 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
73157401 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
73157428 CCAG
1 CCAG
73157432 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 14 0.19
27 60 0.80
28 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:73157403 original size:54 final size:53
Alignment explanation
Indices: 73157321--73157431 Score: 168
Period size: 54 Copynumber: 2.1 Consensus size: 53
73157311 AGCATGGCTG
* *
73157321 CCAGAACAGATAATGTGACAGAGTCACCAGAGCAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAGCAGATAAATGTGGCAGAGCCA
* * *
73157374 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAGCAGATAAATGTGGCAGAGCCA
73157428 CCAG
1 CCAG
73157432 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
53 12 0.23
54 40 0.77
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAGCAGATAAATGTGGCAGAGCCA
Found at i:73158898 original size:24 final size:24
Alignment explanation
Indices: 73158863--73158922 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
73158853 CCAACACTGT
73158863 TCTCCCTAATCAGC-TCCTAAATCC
1 TCTCCCTAATCAGCTTCC-AAATCC
* *
73158887 TCTCCCTTATCAGCTTCCAAATCT
1 TCTCCCTAATCAGCTTCCAAATCC
73158911 TCT-CCTAA-CAGC
1 TCTCCCTAATCAGC
73158923 CTTTCACTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
22 4 0.12
23 4 0.12
24 21 0.66
25 3 0.09
ACGTcount: A:0.23, C:0.40, G:0.05, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTTCCAAATCC
Found at i:73165213 original size:27 final size:27
Alignment explanation
Indices: 73165159--73165269 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
73165149 ACCATAGCTG
* * * *
73165159 CCAGAATAGATAA-TGTGACAAAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
73165185 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
73165212 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * *
73165239 CCAGATCAGATAAATATGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
73165266 CCAG
1 CCAG
73165270 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 14 0.19
27 59 0.80
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:73165249 original size:54 final size:53
Alignment explanation
Indices: 73165159--73165269 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
73165149 ACCATAGCTG
* * * *
73165159 CCAGAATAGATAATGTGACAAAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAAAGCCACCAGAACAGATAAATATGGCAGAGCCA
* * * *
73165212 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAATATGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAAAGCCACCAGAACAGATAAATATGGCAGAGCCA
73165266 CCAG
1 CCAG
73165270 GACGCTTCCT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 11 0.22
54 38 0.78
ACGTcount: A:0.40, C:0.22, G:0.23, T:0.16
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAAAGCCACCAGAACAGATAAATATGGCAGAGCCA
Found at i:73167610 original size:27 final size:28
Alignment explanation
Indices: 73167554--73167623 Score: 133
Period size: 27 Copynumber: 2.5 Consensus size: 28
73167544 AAATTTGTAC
73167554 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
73167582 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
73167609 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
73167624 GACTCACTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
27 25 0.60
28 17 0.40
ACGTcount: A:0.29, C:0.13, G:0.27, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:73175263 original size:9 final size:8
Alignment explanation
Indices: 73175249--73175445 Score: 60
Period size: 9 Copynumber: 24.1 Consensus size: 8
73175239 TATTTTTAAT
73175249 TTATTAATA
1 TTATT-ATA
73175258 TTATTAT-
1 TTATTATA
73175265 TTATTATA
1 TTATTATA
73175273 TTATTTATA
1 TTA-TTATA
*
73175282 TT-TTCAAAA
1 TTATT--ATA
*
73175291 TT-TGTAAA
1 TTAT-TATA
73175299 TTATTATTA
1 TTATTA-TA
73175308 TATATTATA
1 T-TATTATA
73175317 TT-TTA-A
1 TTATTATA
73175323 CTTATATATA
1 -TTAT-TATA
73175333 TT-TTATTA
1 TTATTA-TA
*
73175341 TTTTTAT-
1 TTATTATA
73175348 TTATTTATA
1 TTA-TTATA
*
73175357 TTA-TACA
1 TTATTATA
*
73175364 TTATTTTAA
1 TTATTAT-A
** *
73175373 AAACTTACA
1 TTA-TTATA
*
73175382 TTTTTATA
1 TTATTATA
73175390 TTA-TATA
1 TTATTATA
*
73175397 TTA-TAAA
1 TTATTATA
73175404 TTATT-TCA
1 TTATTAT-A
73175412 TTTATTATA
1 -TTATTATA
73175421 TTATTAT-
1 TTATTATA
73175428 TT-TTATA
1 TTATTATA
73175435 TACTATTATA
1 T--TATTATA
73175445 T
1 T
73175446 ACTATCTATT
Statistics
Matches: 144, Mismatches: 17, Indels: 53
0.67 0.08 0.25
Matches are distributed among these distances:
6 5 0.03
7 40 0.28
8 40 0.28
9 43 0.30
10 16 0.11
ACGTcount: A:0.36, C:0.04, G:0.01, T:0.60
Consensus pattern (8 bp):
TTATTATA
Found at i:73175280 original size:16 final size:16
Alignment explanation
Indices: 73175247--73175277 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
73175237 CTTATTTTTA
73175247 ATTTATTAATATTATT
1 ATTTATTAATATTATT
73175263 ATTTATT-ATATTATT
1 ATTTATTAATATTATT
73175278 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTAATATTATT
Found at i:73175334 original size:51 final size:50
Alignment explanation
Indices: 73175240--73175336 Score: 117
Period size: 51 Copynumber: 1.9 Consensus size: 50
73175230 TTTTAAACTT
* * *
73175240 ATTTTTAATTTATTAATATTATTATTTATTATATTATTTATATTTTCAAA
1 ATTTGTAAATTATTAATATTATTATTTATTATATTATATATATTTTCAAA
*
73175290 ATTTGTAAATTATTATTATATATTATATT-TTA-ACTTATATATATTTT
1 ATTTGTAAATTATTAATAT-TATTAT-TTATTATA-TTATATATATTTT
73175337 ATTATTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
50 17 0.43
51 21 0.52
52 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (50 bp):
ATTTGTAAATTATTAATATTATTATTTATTATATTATATATATTTTCAAA
Found at i:73175366 original size:26 final size:27
Alignment explanation
Indices: 73175303--73175370 Score: 79
Period size: 26 Copynumber: 2.6 Consensus size: 27
73175293 TGTAAATTAT
73175303 TATTATATATTATATTTTAACTTATATA
1 TATTATATATTAT-TTTTAACTTATATA
* *
73175331 TATT-T-TATTATTTTT-ATTTATTTA
1 TATTATATATTATTTTTAACTTATATA
*
73175355 TATTATACATTATTTT
1 TATTATATATTATTTT
73175371 AAAAACTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 11 0.31
25 5 0.14
26 14 0.40
27 1 0.03
28 4 0.11
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (27 bp):
TATTATATATTATTTTTAACTTATATA
Found at i:73175446 original size:26 final size:26
Alignment explanation
Indices: 73175417--73175497 Score: 65
Period size: 26 Copynumber: 3.0 Consensus size: 26
73175407 TTTCATTTAT
73175417 TATATTATTATTTTTATATACTATTA
1 TATATTATTATTTTTATATACTATTA
* * *
73175443 TATACTATCTATTTTAAAATTCACTATTTA
1 TATATTAT-TATTTTTATA-T-ACTA-TTA
* * *
73175473 AATATTA-TATTTTTATGTATTATTA
1 TATATTATTATTTTTATATACTATTA
73175498 AATGTTTAAT
Statistics
Matches: 42, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
25 3 0.07
26 10 0.24
27 9 0.21
28 8 0.19
29 4 0.10
30 8 0.19
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.57
Consensus pattern (26 bp):
TATATTATTATTTTTATATACTATTA
Found at i:73177393 original size:23 final size:23
Alignment explanation
Indices: 73177363--73177435 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 23
73177353 TTACATAAAT
*
73177363 TTATTATACTATTTTATATTTTA
1 TTATTATATTATTTTATATTTTA
* *
73177386 TTATTATATTATTTTACACTTTA
1 TTATTATATTATTTTATATTTTA
* * *
73177409 ATA-TATGTTATTTTAT-TATTA
1 TTATTATATTATTTTATATTTTA
73177430 TTATTA
1 TTATTA
73177436 CATCATATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
21 5 0.12
22 13 0.32
23 22 0.55
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (23 bp):
TTATTATATTATTTTATATTTTA
Found at i:73183812 original size:39 final size:38
Alignment explanation
Indices: 73183655--73183835 Score: 159
Period size: 39 Copynumber: 4.6 Consensus size: 38
73183645 CCGCACCAAG
* * * * * *
73183655 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATAT-AC-ACTAGCACAATT
* * *
73183695 GCCTTCGGGTCTTAGCCCGGATTTAAAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATAT-ACACTAGCAC-AATT
73183734 GCCTTCGGGTCTTAGCCCGGATATAGCACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATA-CACTAGCACAATT
* * *
73183773 GCCTTCGGGTCTTAACCCGGATATA-ATTTCAGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATACA-CT-AGCACAATT
* *
73183812 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
73183836 CATTCAATTT
Statistics
Matches: 120, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
37 1 0.01
38 4 0.03
39 92 0.77
40 23 0.19
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (38 bp):
GCCTTCGGGTCTTAGCCCGGATATACACTAGCACAATT
Found at i:73191846 original size:39 final size:40
Alignment explanation
Indices: 73191668--73191850 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
73191658 CCGCACCAAG
* * * * * * * *
73191668 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
73191708 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
73191748 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
73191788 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
73191827 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
73191851 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:73196076 original size:46 final size:46
Alignment explanation
Indices: 73196026--73196199 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
73196016 GTTGAGCATA
*
73196026 CGAACTCGTTGAGTTGAGTCCGTGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
73196072 CGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GGGATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* *
73196119 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
73196165 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
73196200 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 6 0.06
44 2 0.02
45 1 0.01
46 59 0.55
47 28 0.26
48 1 0.01
49 2 0.02
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:73196185 original size:93 final size:93
Alignment explanation
Indices: 73196021--73196192 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
73196011 GGATGGTTGA
* * *
73196021 GCATACGAACTCGTTGAGTTGAGTCCGTGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73196086 TGAGTCCGAGTTCGTGGGATGTAACTAG
66 TGAGTCCGAGTTCGTGGGATGTAACTAG
* *
73196114 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
73196179 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
73196193 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATACGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGGGATGTAACTAG
Found at i:73197861 original size:27 final size:27
Alignment explanation
Indices: 73197774--73197861 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
73197764 GTGACAAAGT
73197774 CACCAGATACAGATAATTGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCAGAGC
* *
73197802 CACCAAAACAGAT-ATATGTGGCAGAGC
1 CACCAGATCAGATAAT-TGTGGCAGAGC
*
73197829 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGATCAGATAATTGTGGCAGAGC
73197856 CACCAG
1 CACCAG
73197862 GACGCTTCCC
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.04
27 43 0.81
28 8 0.15
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (27 bp):
CACCAGATCAGATAATTGTGGCAGAGC
Found at i:73199114 original size:16 final size:17
Alignment explanation
Indices: 73199095--73199133 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
73199085 AAAAGTTGAT
73199095 GAAGAGAAAAA-AAAAA-
1 GAAGA-AAAAAGAAAAAG
73199111 GAAGAAAAAAGAAAAAG
1 GAAGAAAAAAGAAAAAG
73199128 GAAGAA
1 GAAGAA
73199134 TGGTCAGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.24
16 10 0.48
17 6 0.29
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (17 bp):
GAAGAAAAAAGAAAAAG
Found at i:73205633 original size:27 final size:26
Alignment explanation
Indices: 73205573--73205682 Score: 112
Period size: 27 Copynumber: 4.1 Consensus size: 26
73205563 CATGGCTACT
* * *
73205573 AGAACTGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACC
73205599 AGATACAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAAT-GTGGCAGAGCCACC
*
73205627 AGAACAGATATATATGGCAGAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
** * *
73205654 AGATTAGATAATTGTGGCATATCCACC
1 AGAACAGATAA-TGTGGCAGAGCCACC
73205681 AG
1 AG
73205683 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 4 0.06
27 50 0.70
28 17 0.24
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACC
Found at i:73214042 original size:46 final size:45
Alignment explanation
Indices: 73213989--73214104 Score: 128
Period size: 46 Copynumber: 2.5 Consensus size: 45
73213979 GTGCCAATGC
*
73213989 CATGTCCCAGACATGGTCTTACACTGAC-ACATTCTCATA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTACA-CCT-ATAGGCCGATG
* * * * *
73214035 CATGTCCCAGTCATGTCTTACATTGGCTTACACCTTTAGGCGGATG
1 CATGTCCCAGACATGTCTTACACTGAC-TACACCTATAGGCCGATG
73214081 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
73214105 AGCACAGAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
45 13 0.22
46 43 0.73
47 3 0.05
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGACTACACCTATAGGCCGATG
Found at i:73215439 original size:51 final size:51
Alignment explanation
Indices: 73215348--73215447 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
73215338 CCACAAAATA
* * *
73215348 GTGGTTTCGAAACCACTATTCTAACTATGCCCAAAATCGGGCTGTTACATT
1 GTGGTTTCAAAACCACTATTCCAACTAGGCCCAAAATCGGGCTGTTACATT
** * *
73215399 GTGGTTTCAAAACCACTATTCCAACTAGGCCTTAATTCGGGGTGTTACA
1 GTGGTTTCAAAACCACTATTCCAACTAGGCCCAAAATCGGGCTGTTACA
73215448 ATTTTCCCCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (51 bp):
GTGGTTTCAAAACCACTATTCCAACTAGGCCCAAAATCGGGCTGTTACATT
Found at i:73227161 original size:60 final size:58
Alignment explanation
Indices: 73227087--73227219 Score: 151
Period size: 60 Copynumber: 2.3 Consensus size: 58
73227077 ATTTAAGCCC
* * * * *
73227087 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCC--ATATATTTCCAGCAT
* * **
73227147 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
73227205 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
73227220 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
58 28 0.44
60 34 0.54
61 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.28
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:73227177 original size:29 final size:29
Alignment explanation
Indices: 73227137--73227219 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
73227127 GCCGTATTTT
73227137 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
73227166 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
73227195 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
73227220 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:73228408 original size:24 final size:21
Alignment explanation
Indices: 73228373--73228433 Score: 63
Period size: 24 Copynumber: 2.8 Consensus size: 21
73228363 GAATGAACAC
73228373 TTTTTTT--TTTCTTTTCTTT
1 TTTTTTTCATTTCTTTTCTTT
73228392 GTTTTTCTTCATATTCTTTTTTCTTT
1 -TTTTT-TTCAT-TTC--TTTTCTTT
73228418 TTTTTTTCATTTCTTT
1 TTTTTTTCATTTCTTT
73228434 ATTCTTCCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
20 5 0.14
21 5 0.14
23 4 0.11
24 8 0.23
25 5 0.14
26 8 0.23
ACGTcount: A:0.05, C:0.13, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTTTTTCATTTCTTTTCTTT
Found at i:73228431 original size:23 final size:26
Alignment explanation
Indices: 73228384--73228439 Score: 82
Period size: 23 Copynumber: 2.3 Consensus size: 26
73228374 TTTTTTTTTC
73228384 TTTTCTTTGTTTTTCTTCATATTCTT
1 TTTTCTTTGTTTTTCTTCATATTCTT
73228410 TTTTCTTT-TTTTT-TTCAT-TTCTT
1 TTTTCTTTGTTTTTCTTCATATTCTT
*
73228433 TATTCTT
1 TTTTCTT
73228440 CCTACATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 11 0.38
24 5 0.17
25 5 0.17
26 8 0.28
ACGTcount: A:0.07, C:0.14, G:0.02, T:0.77
Consensus pattern (26 bp):
TTTTCTTTGTTTTTCTTCATATTCTT
Found at i:73228431 original size:32 final size:29
Alignment explanation
Indices: 73228377--73228439 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 29
73228367 GAACACTTTT
73228377 TTTTTTCTTTTCTTTGTTTTTCTTCATATTC
1 TTTTTTCTTTTCTTTGTTTTTCTT--TATTC
*
73228408 TTTTTTCTTTT-TTTTTTCATTTCTTTATTC
1 TTTTTTCTTTTCTTTGTT--TTTCTTTATTC
73228438 TT
1 TT
73228440 CCTACATAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 12 0.41
31 11 0.38
32 6 0.21
ACGTcount: A:0.06, C:0.14, G:0.02, T:0.78
Consensus pattern (29 bp):
TTTTTTCTTTTCTTTGTTTTTCTTTATTC
Found at i:73228433 original size:16 final size:17
Alignment explanation
Indices: 73228372--73228418 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
73228362 AGAATGAACA
*
73228372 CTTTTTTTTTTC-TTTT
1 CTTTTTTTTTTCATATT
73228388 CTTTGTTTTTCTTCATATT
1 CTTT-TTTTT-TTCATATT
73228407 CTTTTTTCTTTT
1 CTTTTTT-TTTT
73228419 TTTTTTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 4 0.15
17 5 0.19
18 8 0.31
19 9 0.35
ACGTcount: A:0.04, C:0.15, G:0.02, T:0.79
Consensus pattern (17 bp):
CTTTTTTTTTTCATATT
Found at i:73236989 original size:41 final size:41
Alignment explanation
Indices: 73236944--73237061 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
73236934 TGAAAGATAA
73236944 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
73236985 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73237015 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
73237056 ATGTAG
1 ATGTAG
73237062 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:73237000 original size:71 final size:71
Alignment explanation
Indices: 73236912--73237075 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
73236902 GAGATGTATC
73236912 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73236977 AGGACA
66 AGGACA
73236983 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
73237048 AGGACA
66 AGGACA
73237054 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
73237076 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:73244473 original size:40 final size:40
Alignment explanation
Indices: 73244426--73244570 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
73244416 CTCGCCCAAG
* * *
73244426 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
*
73244466 GCCTTCGGGACTTAGCCCGGATATAGTTACTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
* ** * *
73244506 GCCTTC-GGATCTTAGTCCGGAGGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACAAAT
*
73244547 GCCTTCAGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
73244571 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:73245296 original size:14 final size:14
Alignment explanation
Indices: 73245277--73245304 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73245267 TTATTTGCAA
73245277 ACATATATATATAT
1 ACATATATATATAT
73245291 ACATATATATATAT
1 ACATATATATATAT
73245305 GTGCAAGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
ACATATATATATAT
Found at i:73251046 original size:27 final size:27
Alignment explanation
Indices: 73251016--73251071 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
73251006 ATCTCATATC
* *
73251016 TGTAGGCTAGTATTACTGAAATGCCCT
1 TGTAGGCTAGAATTACTGAAATACCCT
*
73251043 TGTAGGGTAGAATTACTGAAATACCCT
1 TGTAGGCTAGAATTACTGAAATACCCT
73251070 TG
1 TG
73251072 GTTCACCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (27 bp):
TGTAGGCTAGAATTACTGAAATACCCT
Found at i:73251119 original size:27 final size:27
Alignment explanation
Indices: 73251089--73251450 Score: 239
Period size: 27 Copynumber: 13.4 Consensus size: 27
73251079 AAAATTACTG
* *
73251089 AATACCCTTGGTTTATAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
** * * *
73251116 AATACCCTCAATTAGAAAAATTACTAA
1 AATACCCTTGATTTGTAAAATTACCAA
* *
73251143 AATACCCCTGATTTGTCAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * * *
73251170 AATACCCCTAATTTGTTAAATTACTAA
1 AATACCCTTGATTTGTAAAATTACCAA
** * ***
73251197 AATACCCTTGACCTGTTAAATTATTGA
1 AATACCCTTGATTTGTAAAATTACCAA
* * ***
73251224 AATACCCTCGACTTGTAAAATTATTGA
1 AATACCCTTGATTTGTAAAATTACCAA
*
73251251 AATACCCTCGATTTGTAAAATTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * * *
73251278 AATACCCCTGATTTGGAAAAGTATCAA
1 AATACCCTTGATTTGTAAAATTACCAA
* * *
73251305 AATACCTTTGATATAG-AAAATTA-TAGA
1 AATACCCTTGAT-TTGTAAAATTACCA-A
* **
73251332 AATACCCCTGATTTACAAAATTA-CAGA
1 AATACCCTTGATTTGTAAAATTACCA-A
73251359 AATACCCTTGACTTT-TAAAAATTA-CAGA
1 AATACCCTTGA-TTTGT-AAAATTACCA-A
* * * * *
73251387 AATACCATTGGTTTGCAAAATTATCGA
1 AATACCCTTGATTTGTAAAATTACCAA
* * *
73251414 AATACCCTTGGTTTGTATATTTACCAA
1 AATACCCTTGATTTGTAAAATTACCAA
*
73251441 AACACCCTTG
1 AATACCCTTG
73251451 TAGGGTGAAA
Statistics
Matches: 270, Mismatches: 58, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.01
27 242 0.90
28 26 0.10
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AATACCCTTGATTTGTAAAATTACCAA
Found at i:73251745 original size:41 final size:41
Alignment explanation
Indices: 73251688--73251804 Score: 171
Period size: 41 Copynumber: 2.9 Consensus size: 41
73251678 GGGGGAAGAA
* * *
73251688 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATGCACCG
1 ATTGAGGATAGCATGGTTGCTTGATGACCGTGGATCCACCG
* *
73251729 ATTGAGGATTGCATGGTTGCTTGATGATCGTGGATCCACCG
1 ATTGAGGATAGCATGGTTGCTTGATGACCGTGGATCCACCG
* *
73251770 ATTAAGGATAGCATGGTTGCTTGATGACTGTGGAT
1 ATTGAGGATAGCATGGTTGCTTGATGACCGTGGAT
73251805 TCACTAGTGG
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.30
Consensus pattern (41 bp):
ATTGAGGATAGCATGGTTGCTTGATGACCGTGGATCCACCG
Found at i:73253056 original size:34 final size:34
Alignment explanation
Indices: 73253016--73253085 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
73253006 GGTTTTTGAA
*
73253016 AAACACTTCAATGTGACATACCAGATTTCGGCCT
1 AAACACTTCAATGTGACACACCAGATTTCGGCCT
* * *
73253050 AAACACTTCAATGTGACACGCTAGATTTGGGCCT
1 AAACACTTCAATGTGACACACCAGATTTCGGCCT
73253084 AA
1 AA
73253086 CTTCTATGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (34 bp):
AAACACTTCAATGTGACACACCAGATTTCGGCCT
Found at i:73258610 original size:103 final size:103
Alignment explanation
Indices: 73258432--73258619 Score: 254
Period size: 103 Copynumber: 1.8 Consensus size: 103
73258422 TGTGATGTGC
* * * * *
73258432 GAGTAAGACCATGGCATCGATATGTGATTCTAATATATGTGTGCAAGTAAGACCGCATTTAATAC
1 GAGTAAAACCATGGCATCAATATGTGATTCCAATATATGTGTGCAAGTAAGACCGCATTCAAGAC
*
73258497 GTTGGCATCGATATGTGATTTCGATATATGTCACATGT
66 GTTGGCATCGATATGGGATTTCGATATATGTCACATGT
* * *
73258535 GAGTAAAACCATGGCATTAATATGTGATTCCAATATATGTGTGCGAGTAAGACC-CTATTCAGGA
1 GAGTAAAACCATGGCATCAATATGTGATTCCAATATATGTGTGCAAGTAAGACCGC-ATTCAAGA
*
73258599 CAG-TGGGATCGATATGGGATT
65 C-GTTGGCATCGATATGGGATT
73258620 ACATGTAAGA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
102 1 0.01
103 71 0.97
104 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (103 bp):
GAGTAAAACCATGGCATCAATATGTGATTCCAATATATGTGTGCAAGTAAGACCGCATTCAAGAC
GTTGGCATCGATATGGGATTTCGATATATGTCACATGT
Done.