Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 234 of 325
Found at i:73259090 original size:44 final size:44
Alignment explanation
Indices: 73259027--73259110 Score: 168
Period size: 44 Copynumber: 1.9 Consensus size: 44
73259017 CCATTGAATG
73259027 ATAGTTTGTTAATGTATATTTATATATATAAGTGTTCATTCGAT
1 ATAGTTTGTTAATGTATATTTATATATATAAGTGTTCATTCGAT
73259071 ATAGTTTGTTAATGTATATTTATATATATAAGTGTTCATT
1 ATAGTTTGTTAATGTATATTTATATATATAAGTGTTCATT
73259111 TGGTCATTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.32, C:0.04, G:0.13, T:0.51
Consensus pattern (44 bp):
ATAGTTTGTTAATGTATATTTATATATATAAGTGTTCATTCGAT
Found at i:73261341 original size:11 final size:11
Alignment explanation
Indices: 73261327--73261353 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
73261317 ATTAAAAGCA
73261327 AATGTTTGGAC
1 AATGTTTGGAC
73261338 AATGTTTGGAC
1 AATGTTTGGAC
73261349 AATGT
1 AATGT
73261354 AAATTTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (11 bp):
AATGTTTGGAC
Found at i:73262928 original size:39 final size:38
Alignment explanation
Indices: 73262874--73262950 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 38
73262864 ATACTCATAG
73262874 CTAAATAAGCTCAATAGCTTTCGAAATCAATGGTAGCCA
1 CTAAATAAGCTCAATAGCTTTCGAAATCAAT-GTAGCCA
*
73262913 CTAAATAAGCTCAATAGCTTTCGAAATCTATGTAGCCA
1 CTAAATAAGCTCAATAGCTTTCGAAATCAATGTAGCCA
73262951 AGCTACCATG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 7 0.19
39 30 0.81
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (38 bp):
CTAAATAAGCTCAATAGCTTTCGAAATCAATGTAGCCA
Found at i:73269244 original size:40 final size:40
Alignment explanation
Indices: 73269185--73269404 Score: 322
Period size: 40 Copynumber: 5.5 Consensus size: 40
73269175 ACCCAAGCAT
* *
73269185 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
73269224 CTTCGGGTCTTGGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
*
73269264 CTTCGGGACTTAGCCCGGATATAGTCAA-TAGCA-AAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
* *
73269303 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
*
73269343 ATTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
73269383 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
73269405 CATTCAAATA
Statistics
Matches: 164, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 48 0.29
40 112 0.68
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:73269319 original size:79 final size:80
Alignment explanation
Indices: 73269185--73269404 Score: 322
Period size: 79 Copynumber: 2.8 Consensus size: 80
73269175 ACCCAAGCAT
* * * *
73269185 CTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTGGCCCGGATATAG-
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* *
73269248 CAACTCGCACAAATGC
66 C-ACTAGCACAAAAGC
*
73269264 CTTCGGGACTTAGCCCGGATATAGTCAA-TAGCA-AAATGCCTTCGGGACTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
73269327 TCACTAGCACAAAAGC
65 TCACTAGCACAAAAGC
*
73269343 ATTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
73269405 CATTCAAATA
Statistics
Matches: 127, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
78 3 0.02
79 79 0.62
80 42 0.33
81 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.22
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAAAGC
Found at i:73277554 original size:40 final size:40
Alignment explanation
Indices: 73277495--73277715 Score: 313
Period size: 40 Copynumber: 5.5 Consensus size: 40
73277485 ACCCAAGCAT
* * *
73277495 CTTCGGGATTTAG-CCGGATATAACAACTCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
* * *
73277534 CTTCGGGTCTTGGCCCGGATATAGCTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
*
73277574 CTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
* *
73277614 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAAAGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATGC
73277654 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
*
73277694 CTTCGGGACTTAGCCCAGATAT
1 CTTCGGGACTTAGCCCGGATAT
73277716 CATTTGAATA
Statistics
Matches: 164, Mismatches: 14, Indels: 7
0.89 0.08 0.04
Matches are distributed among these distances:
39 12 0.07
40 150 0.91
41 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:73285181 original size:21 final size:21
Alignment explanation
Indices: 73285148--73285191 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
73285138 ATCTTCTCGA
*
73285148 TTTGGTCCGTTTT-GTCCCTT
1 TTTGGTCAGTTTTAGTCCCTT
*
73285168 TTTGGCTCAGTTTTAGTTCCTT
1 TTTGG-TCAGTTTTAGTCCCTT
73285190 TT
1 TT
73285192 GACTCTTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 5 0.25
21 7 0.35
22 8 0.40
ACGTcount: A:0.05, C:0.20, G:0.18, T:0.57
Consensus pattern (21 bp):
TTTGGTCAGTTTTAGTCCCTT
Found at i:73286896 original size:28 final size:28
Alignment explanation
Indices: 73286850--73286918 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
73286840 TTTAAAACCC
*
73286850 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
73286877 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
73286905 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
73286919 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:73294717 original size:40 final size:40
Alignment explanation
Indices: 73294662--73294871 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73294652 AACATTGGAA
73294662 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73294702 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73294742 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73294782 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73294821 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73294862 CTATATCCGG
1 ATATATCCGG
73294872 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73302852 original size:40 final size:40
Alignment explanation
Indices: 73302797--73303006 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73302787 AACATTGGAA
73302797 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73302837 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73302877 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73302917 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73302956 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73302997 CTATATCCGG
1 ATATATCCGG
73303007 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73308618 original size:26 final size:26
Alignment explanation
Indices: 73308561--73308610 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
73308551 AGATGCTCAA
73308561 AAGGCTCAAAAATCTCACAAAAAAAT
1 AAGGCTCAAAAATCTCACAAAAAAAT
73308587 AAGGCTCAAAAATCTCACAAAAAA
1 AAGGCTCAAAAATCTCACAAAAAA
73308611 TTATGGCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.20, G:0.08, T:0.14
Consensus pattern (26 bp):
AAGGCTCAAAAATCTCACAAAAAAAT
Found at i:73311607 original size:45 final size:45
Alignment explanation
Indices: 73311536--73311713 Score: 275
Period size: 45 Copynumber: 4.0 Consensus size: 45
73311526 CGTACAGTAA
* * * ** *
73311536 TATTCGGGCCTTTAAGCCTTGTAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
73311581 TATTCGGGCCTCTGAGCCTAGCAGGCTACAATGCTGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
73311626 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
73311671 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAAT
73311714 GATATCGGGC
Statistics
Matches: 122, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 122 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
Found at i:73311689 original size:90 final size:90
Alignment explanation
Indices: 73311536--73311747 Score: 279
Period size: 90 Copynumber: 2.4 Consensus size: 90
73311526 CGTACAGTAA
* * ** *
73311536 TATTCGGGCCTTTAAGCCTTGTAGGCTATGATGCCGGTGAGATACTATTCGGGCCTCTGAGCCTA
1 TATTCGGGCCTTTAAGCCTAGCAGGCTACAATGCCGGTGAAATACTATTCGGGCCTCTGAGCCTA
*
73311601 GCAGGCTACAATGCTGGTGAAATAC
66 GCAGGCTACAATGCCGGTGAAATAC
* *
73311626 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATACTATTCGGGCCTTTGAGCCTA
1 TATTCGGGCCTTTAAGCCTAGCAGGCTACAATGCCGGTGAAATACTATTCGGGCCTCTGAGCCTA
*
73311691 GCAGGCTATAATGCCGGTGAAATGA-
66 GCAGGCTACAATGCCGGTGAAAT-AC
* * *
73311716 TA-TCGGG-CTTCAAGCCTACCAGGCGA-AATGCC
1 TATTCGGGCCTTTAAGCCTAGCAGGCTACAATGCC
73311748 AGTGGATGAA
Statistics
Matches: 108, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
87 6 0.06
88 15 0.14
89 5 0.05
90 81 0.75
91 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (90 bp):
TATTCGGGCCTTTAAGCCTAGCAGGCTACAATGCCGGTGAAATACTATTCGGGCCTCTGAGCCTA
GCAGGCTACAATGCCGGTGAAATAC
Found at i:73313649 original size:49 final size:49
Alignment explanation
Indices: 73313585--73313922 Score: 622
Period size: 49 Copynumber: 6.9 Consensus size: 49
73313575 AGATATACGC
73313585 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
73313634 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
*
73313683 TTTCACGTTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
* *
73313732 TTTCACGTTCATCACATCCGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
73313781 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
73313830 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
* *
73313879 TTTCACGTTCATCACATCGGCCATTAGGCCTTATATACATATAT
1 TTTCACATTCATCACATCGGCCATTAGGCCTTAT-CACATATAT
73313923 TATTATGTAC
Statistics
Matches: 282, Mismatches: 6, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
49 274 0.97
50 8 0.03
ACGTcount: A:0.30, C:0.27, G:0.09, T:0.35
Consensus pattern (49 bp):
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACAT
Found at i:73318988 original size:28 final size:28
Alignment explanation
Indices: 73318948--73319003 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
73318938 AAAATGGGTG
73318948 ATAAAAACAAAGTGAACTTTATTTTTAT
1 ATAAAAACAAAGTGAACTTTATTTTTAT
73318976 ATAAAAACAAAGTGAACTTTATTTTTAT
1 ATAAAAACAAAGTGAACTTTATTTTTAT
73319004 TCTTTCTATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39
Consensus pattern (28 bp):
ATAAAAACAAAGTGAACTTTATTTTTAT
Found at i:73320735 original size:45 final size:45
Alignment explanation
Indices: 73320671--73320885 Score: 285
Period size: 45 Copynumber: 4.8 Consensus size: 45
73320661 CGTACAGTAA
*** * *
73320671 TATTCGGGCCTTTGAGCCTAGCAGGCTGTGATGCCAGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
73320716 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTAAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
*
73320761 TATTCGGGCCTTTGAGCCTAGAAGGCTACAATGCCGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
* *
73320806 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAAT-AC
* * *
73320851 TA-TAGGG-CTTCGAGCCTAGCAGGC-AAAATGCCGGT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGT
73320886 AGATGAATTT
Statistics
Matches: 154, Mismatches: 15, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
42 10 0.06
43 16 0.10
44 3 0.02
45 124 0.81
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCGGTGAAATAC
Found at i:73321137 original size:10 final size:10
Alignment explanation
Indices: 73321122--73321153 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
73321112 TTCGGTCAAG
73321122 ATGTGAAAGT
1 ATGTGAAAGT
73321132 ATGTGAAAGT
1 ATGTGAAAGT
73321142 ATGTGAAAGT
1 ATGTGAAAGT
73321152 AT
1 AT
73321154 TTGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (10 bp):
ATGTGAAAGT
Found at i:73325581 original size:17 final size:19
Alignment explanation
Indices: 73325539--73325582 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
73325529 ACGAAATTTT
*
73325539 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
73325558 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
73325576 AA-TATTA
1 AATTATTA
73325583 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:73334224 original size:40 final size:40
Alignment explanation
Indices: 73334145--73334302 Score: 151
Period size: 40 Copynumber: 4.0 Consensus size: 40
73334135 TTCGAATGAT
* * * *
73334145 ATCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGC-GAGTTACTAA
* *
73334185 ATCCGGACTAAGATCCGACGGCATACGTGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
* * * *
73334225 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
** *
73334265 ATCCGGGTTGAG-TCCCGAAGGCATTCGTGCGAGTTACT
1 ATCCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTACT
73334303 GTAACCGGGC
Statistics
Matches: 96, Mismatches: 19, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
39 1 0.01
40 89 0.93
41 6 0.06
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTTACTAA
Found at i:73334323 original size:80 final size:80
Alignment explanation
Indices: 73334145--73334332 Score: 206
Period size: 80 Copynumber: 2.3 Consensus size: 80
73334135 TTCGAATGAT
* *
73334145 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
73334210 CGTGCGAGTTACTAA
66 CGTGCGAGTTACTAA
* ** *
73334225 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* *
73334286 CATTCGTGCGAGTTACTGTA
62 CATACGTGCGAGTTACT-AA
*
73334306 A-CCGGGCTATGTCCCGAAGGCATTTGA
1 ATCCGGGCTAAGTCCCGAAGGC-TTTGA
73334333 ATGTGTAGCC
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
79 2 0.02
80 79 0.87
81 10 0.11
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CGTGCGAGTTACTAA
Found at i:73342295 original size:40 final size:39
Alignment explanation
Indices: 73342177--73342302 Score: 123
Period size: 40 Copynumber: 3.2 Consensus size: 39
73342167 TTCGAATGAT
* *
73342177 ATCCGGGCTAAG-TCCCGAAGGCTTT-GTGCTAAGTGACTAA
1 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGT-ACTAA
* * * *
73342217 ATCCGGACTAAGATCCGACGGCATAC-ATGCGAGTTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGA-GCAAG-TACTAA
73342257 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGCTACTAA
1 ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAG-TACTAA
73342297 ATCCGG
1 ATCCGG
73342303 GTTGAGTCCC
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
40 65 0.93
41 5 0.07
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21
Consensus pattern (39 bp):
ATCCGGACTAAGATCCGAAGGCTTTCGAGCAAGTACTAA
Found at i:73342355 original size:80 final size:80
Alignment explanation
Indices: 73342177--73342356 Score: 190
Period size: 80 Copynumber: 2.2 Consensus size: 80
73342167 TTCGAATGAT
* *
73342177 ATCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGACGGCATA
1 ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
73342242 CATGCGAGTTACTAA
66 CATGCGAGTTACTAA
* ** *
73342257 ATCCGGACTAAGAT-CCGAAGGCTTTCGAGC-AAGCT-ACTAAATCCGGGTTGAG-TCCCGAAGG
1 ATCCGGGCTAAG-TCCCGAAGGCTTT-GAGCTAAG-TGACTAAATCCGGACTAAGAT-CCGAAGG
* * *
73342318 CATTCGTGCGAGTTACTGTA
62 CATACATGCGAGTTACT-AA
*
73342338 A-CCGGGCTATGTCCCGAAG
1 ATCCGGGCTAAGTCCCGAAG
73342357 CATTTGAATG
Statistics
Matches: 83, Mismatches: 11, Indels: 12
0.78 0.10 0.11
Matches are distributed among these distances:
79 2 0.02
80 74 0.89
81 7 0.08
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (80 bp):
ATCCGGGCTAAGTCCCGAAGGCTTTGAGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATA
CATGCGAGTTACTAA
Found at i:73356235 original size:13 final size:13
Alignment explanation
Indices: 73356217--73356243 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73356207 ACTGACGATC
73356217 AGTCTGAGCGGGT
1 AGTCTGAGCGGGT
73356230 AGTCTGAGCGGGT
1 AGTCTGAGCGGGT
73356243 A
1 A
73356244 ATTCAGATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.44, T:0.22
Consensus pattern (13 bp):
AGTCTGAGCGGGT
Found at i:73360925 original size:124 final size:122
Alignment explanation
Indices: 73360705--73360926 Score: 293
Period size: 124 Copynumber: 1.8 Consensus size: 122
73360695 GAATTATGTG
* * * *
73360705 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATACCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
73360770 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
73360827 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
73360891 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
73360927 TCCGGGTTAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 16 0.19
124 65 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:73360970 original size:40 final size:40
Alignment explanation
Indices: 73360885--73361035 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
73360875 AATTGAATGA
* * * *
73360885 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
73360925 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
73360966 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
73361005 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
73361036 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:73361049 original size:40 final size:40
Alignment explanation
Indices: 73360922--73361051 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
73360912 ATGCTGGAAA
* * *
73360922 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
73360962 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
73361002 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
73361042 TTATATCCGG
1 TTATATCCGG
73361052 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:73361050 original size:80 final size:80
Alignment explanation
Indices: 73360884--73361051 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
73360874 AAATTGAATG
* *
73360884 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
73360949 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
73360964 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
73361027 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
73361044 ATATCCGG
1 ATATCCGG
73361052 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:73363693 original size:40 final size:40
Alignment explanation
Indices: 73363648--73363814 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
73363638 CGGAATATAA
73363648 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
73363688 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
73363728 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * *
73363768 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
73363807 CCGGATAT
1 CCGGATAT
73363815 CATTCAATTT
Statistics
Matches: 102, Mismatches: 24, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
39 14 0.14
40 88 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:73363798 original size:80 final size:79
Alignment explanation
Indices: 73363664--73363812 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
73363654 ATAACCACGT
*
73363664 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-CTTAGCC
73363729 CGGATGTAGCCACTA
65 CGGATGTAGCCACTA
* * * * *
73363744 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGCTTAGC
73363807 CCGGAT
64 CCGGAT
73363813 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 15 0.25
80 46 0.75
ACGTcount: A:0.21, C:0.28, G:0.24, T:0.27
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGCTTAGCCC
GGATGTAGCCACTA
Found at i:73371538 original size:50 final size:49
Alignment explanation
Indices: 73371422--73371551 Score: 172
Period size: 50 Copynumber: 2.6 Consensus size: 49
73371412 CTGGTACGCA
* * * * **
73371422 TAGTAGCCTGCACTTAGTACTACAAATGCGACCAATAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
*
73371471 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACAGTCTAATACACG
73371521 TAGTAGCCTGCACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
73371552 TCACAGTTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
49 28 0.39
50 41 0.57
51 3 0.04
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAGTCTAATACACG
Found at i:73371595 original size:101 final size:99
Alignment explanation
Indices: 73371422--73371608 Score: 248
Period size: 101 Copynumber: 1.9 Consensus size: 99
73371412 CTGGTACGCA
* * * *
73371422 TAGTAGCCTGCACTTAGTACTACAAATGCGACCAATAGTCTGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACAAACGCGACCAATAGTCGGGTACACATAATAGCCTGCACTTA
*
73371487 GTACTACACACGTGACCTCACCATCTAATACACG
66 GTACTACACACGCGACCTCACCATCTAATACACG
* * * ** *
73371521 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAATAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACAAACGCGA-C-CAATAGTCGGGTACACATAATAGCCTGCACT
*
73371586 TAGTACTACACATGCGACCTCAC
64 TAGTACTACACACGCGACCTCAC
73371609 AATAGATCAT
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 28 0.38
100 1 0.01
101 45 0.61
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACAAACGCGACCAATAGTCGGGTACACATAATAGCCTGCACTTA
GTACTACACACGCGACCTCACCATCTAATACACG
Found at i:73377712 original size:39 final size:39
Alignment explanation
Indices: 73377597--73377816 Score: 307
Period size: 39 Copynumber: 5.6 Consensus size: 39
73377587 GTTCAAAACA
* * ** * *
73377597 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73377637 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* * *
73377677 CCTTCGGGCTTAGCCCGGGTATCATAGCTCACACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
73377716 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73377755 CCTTCGGGCTTAGCCCGG-TATCATAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73377793 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73377817 CTCGAACATT
Statistics
Matches: 163, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
38 37 0.23
39 86 0.53
40 40 0.25
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73377816 original size:77 final size:77
Alignment explanation
Indices: 73377597--73377817 Score: 316
Period size: 77 Copynumber: 2.8 Consensus size: 77
73377587 GTTCAAAACA
* ** * * *
73377597 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATGCCTTCGGGACTTAACCCGGATATCA
1 CCTTCGGG-CTTAGCCCGG-TATCATAACTCGCACAATTGCCTTCGGG-CTTAGCCCGGATATCA
73377662 CAACTCGCACAATTG
63 CAACTCGCACAATTG
* * *
73377677 CCTTCGGGCTTAGCCCGGGTATCATAGCTCACACAATTGCCTTCGGGCTTAGCCCGGATATCATA
1 CCTTCGGGCTTAGCCC-GGTATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACA
*
73377742 GCTCGCACAATTG
65 ACTCGCACAATTG
73377755 CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
1 CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCAC
73377818 TCGAACATTC
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
77 44 0.35
78 44 0.35
79 29 0.23
80 10 0.08
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (77 bp):
CCTTCGGGCTTAGCCCGGTATCATAACTCGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAA
CTCGCACAATTG
Found at i:73385246 original size:37 final size:39
Alignment explanation
Indices: 73385114--73385330 Score: 289
Period size: 38 Copynumber: 5.6 Consensus size: 39
73385104 GTTCAAAACA
* * ** * *
73385114 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73385154 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
73385194 CCTTCGGGCTTAGCCCGGGTATCATAGCTCG-ACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
*
73385232 CCTT-GGGCTTAGCCCGGATATCATAGCTCG-ACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73385269 CCTTCGGGCTTAGCCCGG-TATCATAACTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
73385307 CCTTCGGGCTTAGCCCGGATATCA
1 CCTTCGGGCTTAGCCCGGATATCA
73385331 CTCGAACATT
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
37 47 0.29
38 49 0.31
39 24 0.15
40 40 0.25
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:73388601 original size:29 final size:27
Alignment explanation
Indices: 73388553--73388630 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
73388543 GAAACCACCA
*
73388553 TATAACATA-AATGC-AGAAAATCTACC
1 TATAACATATAATGCGATAAAAT-TACC
* *
73388579 GTATAGCATATAATGCGATAAAATTGCC
1 -TATAACATATAATGCGATAAAATTACC
* * *
73388607 AATATCATCTAATGCGATAAAATT
1 TATAACATATAATGCGATAAAATT
73388631 GTAACACCCC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
27 29 0.67
28 8 0.19
29 6 0.14
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (27 bp):
TATAACATATAATGCGATAAAATTACC
Found at i:73397836 original size:40 final size:40
Alignment explanation
Indices: 73397786--73397983 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
73397776 AGCCCGGTTA
*
73397786 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
73397826 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
73397866 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
73397906 TAGTAACTCGCACAATTGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
73397946 TAGTAACTTAGCACAGA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
73397984 CATCATTCGA
Statistics
Matches: 148, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 3 0.02
40 135 0.91
41 10 0.07
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:73405933 original size:40 final size:40
Alignment explanation
Indices: 73405883--73406079 Score: 278
Period size: 40 Copynumber: 5.0 Consensus size: 40
73405873 AGCCCGGTTA
*
73405883 TAGTAGCTCGCACAAATGCCTTCGGGA-CTTA-TCCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAGT-CCGGATT
73405923 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
73405963 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
*
73406003 TAGTAACTCGCACAATTGCCTTCGGATCTTAGT-CGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
* * *
73406042 TAGTAACTTAGCACAGA-GCCTTCGGGA-CTTAGCCCGGA
1 TAGTAAC-TCGCACAAATGCCTTC-GGATCTTAGTCCGGA
73406080 CATCATTCGA
Statistics
Matches: 146, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
39 27 0.18
40 118 0.81
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.28
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATT
Found at i:73408158 original size:28 final size:28
Alignment explanation
Indices: 73408123--73408247 Score: 121
Period size: 29 Copynumber: 4.4 Consensus size: 28
73408113 CAAAGATTTT
73408123 CCACAAAGG-TTGACCTTTAATAGGTTTG
1 CCACAAAGGCTT-ACCTTTAATAGGTTTG
*
73408151 CCACAAAGGCTTACCTTT-CTAGAGTTTTG
1 CCACAAAGGCTTACCTTTAATAG-G-TTTG
* * *
73408180 CCACAAAGGCTTTCCTTTAACAGGATTG
1 CCACAAAGGCTTACCTTTAATAGGTTTG
* *
73408208 CCACAGAGGCTTACCTTTCCAA-AGTTTTG
1 CCACAAAGGCTTACCTTT--AATAGGTTTG
*
73408237 TCACAAAGGCT
1 CCACAAAGGCT
73408248 ATCCTTCCAC
Statistics
Matches: 80, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
27 3 0.04
28 35 0.44
29 38 0.47
30 4 0.05
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (28 bp):
CCACAAAGGCTTACCTTTAATAGGTTTG
Found at i:73408253 original size:29 final size:28
Alignment explanation
Indices: 73408111--73408247 Score: 129
Period size: 28 Copynumber: 4.8 Consensus size: 28
73408101 GGTGTTTTCC
73408111 TTCAAAGATTTT-CCACAAAGG-TTGACCT
1 TTCAAAG-TTTTGCCACAAAGGCTT-ACCT
*
73408139 TT-AATAGGTTTGCCACAAAGGCTTACCT
1 TTCAA-AGTTTTGCCACAAAGGCTTACCT
* *
73408167 TTCTAGAGTTTTGCCACAAAGGCTTTCCT
1 TTC-AAAGTTTTGCCACAAAGGCTTACCT
** *
73408196 TT-AACAGGATTGCCACAGAGGCTTACCT
1 TTCAA-AGTTTTGCCACAAAGGCTTACCT
*
73408224 TTCCAAAGTTTTGTCACAAAGGCT
1 TT-CAAAGTTTTGCCACAAAGGCT
73408248 ATCCTTCCAC
Statistics
Matches: 88, Mismatches: 13, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
27 6 0.07
28 40 0.45
29 39 0.44
30 3 0.03
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (28 bp):
TTCAAAGTTTTGCCACAAAGGCTTACCT
Found at i:73408253 original size:57 final size:57
Alignment explanation
Indices: 73408113--73408253 Score: 178
Period size: 57 Copynumber: 2.5 Consensus size: 57
73408103 TGTTTTCCTT
* * *
73408113 CAAAGATTTT-CCACAAAGGTTGA-CCTTTAATAGGTTTGCCACAAAGGCTTACCTTTC
1 CAAAG-TTTTGCCACAAAGGCT-ATCCTTTAACAGGATTGCCACAAAGGCTTACCTTTC
* * * *
73408170 TAGAGTTTTGCCACAAAGGCTTTCCTTTAACAGGATTGCCACAGAGGCTTACCTTTC
1 CAAAGTTTTGCCACAAAGGCTATCCTTTAACAGGATTGCCACAAAGGCTTACCTTTC
*
73408227 CAAAGTTTTGTCACAAAGGCTATCCTT
1 CAAAGTTTTGCCACAAAGGCTATCCTT
73408254 CCACAAATGC
Statistics
Matches: 71, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
56 4 0.06
57 67 0.94
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (57 bp):
CAAAGTTTTGCCACAAAGGCTATCCTTTAACAGGATTGCCACAAAGGCTTACCTTTC
Found at i:73408528 original size:53 final size:53
Alignment explanation
Indices: 73408443--73408652 Score: 287
Period size: 53 Copynumber: 4.0 Consensus size: 53
73408433 AATTTTTCCC
* * * *
73408443 ATATGATGCCATAACCCACCAATTATGGTCTTACACAATATGGTCTTATTTCT
1 ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTTCT
* * *
73408496 ATATGATGCCATAACCCACTAGTTACGATCTTACATAGTATGGTCTTCTTTCT
1 ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTTCT
* * *
73408549 ATATGATGCCATAACCCACCAGTTAC-AGTCTTACACGATATGTTCTTCTTTCC
1 ATATGATGCCATAACCCACCAGTTACGA-TCTTACACAATATGGTCTTCTTTCT
** *
73408602 ATATGATTTCATAACCCACCAGTTACGGTCTTACACAATATGGTCTTCTTT
1 ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTT
73408653 AATGCTATGG
Statistics
Matches: 137, Mismatches: 18, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
52 1 0.01
53 136 0.99
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (53 bp):
ATATGATGCCATAACCCACCAGTTACGATCTTACACAATATGGTCTTCTTTCT
Found at i:73415731 original size:17 final size:17
Alignment explanation
Indices: 73415709--73415741 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
73415699 TAGAATTAGG
73415709 TTGAGAAGATT-ATTTAA
1 TTGAGAA-ATTAATTTAA
73415726 TTGAGAAATTAATTTA
1 TTGAGAAATTAATTTA
73415742 TTAACTTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (17 bp):
TTGAGAAATTAATTTAA
Found at i:73417448 original size:29 final size:27
Alignment explanation
Indices: 73417414--73417516 Score: 98
Period size: 29 Copynumber: 3.6 Consensus size: 27
73417404 TACTCAATCA
*
73417414 CGCACACTTAGTGCCATGTGATTCAAGCC
1 CGCACACTTAGTGCCAT-T-ATTCAAGCT
* * *
73417443 CGCACACATAGTGCCATATAGTCCAAACT
1 CGCACACTTAGTGCCAT-TA-TTCAAGCT
*
73417472 CGCACACTTAGTGCCATACATTACAAGCT
1 CGCACACTTAGTGCCAT-TATT-CAAGCT
*
73417501 CGCACACTCAGTGCCA
1 CGCACACTTAGTGCCA
73417517 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 2 0.03
29 60 0.97
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (27 bp):
CGCACACTTAGTGCCATTATTCAAGCT
Found at i:73425148 original size:28 final size:29
Alignment explanation
Indices: 73425081--73425181 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
73425071 ATAGTGAATC
*
73425081 CGCACACTTAGTGCTATATATATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
73425110 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
73425138 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
73425168 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73425182 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:73430313 original size:40 final size:40
Alignment explanation
Indices: 73430258--73430467 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73430248 AACATTGGAA
73430258 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73430298 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73430338 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73430378 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73430417 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73430458 CTATATCCGG
1 ATATATCCGG
73430468 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73438446 original size:40 final size:40
Alignment explanation
Indices: 73438391--73438600 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
73438381 AACATTGGAA
73438391 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73438431 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
73438471 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
73438511 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
73438550 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
73438591 CTATATCCGG
1 ATATATCCGG
73438601 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:73446076 original size:21 final size:21
Alignment explanation
Indices: 73446017--73446062 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
73446007 AACACATAAA
*
73446017 GTGCCTAAAACGACACACGAG
1 GTGCCTAATACGACACACGAG
73446038 GTGCCTAATACGACACACGAG
1 GTGCCTAATACGACACACGAG
73446059 GTGC
1 GTGC
73446063 TTGAAATACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.28, G:0.26, T:0.13
Consensus pattern (21 bp):
GTGCCTAATACGACACACGAG
Found at i:73446076 original size:23 final size:21
Alignment explanation
Indices: 73446003--73446077 Score: 69
Period size: 21 Copynumber: 3.5 Consensus size: 21
73445993 CCTGATGAGT
** *
73446003 ATACAACACATAAAGTGCCTA
1 ATACAACACACGAGGTGCCTA
* *
73446024 AAACGACACACGAGGTGCCTA
1 ATACAACACACGAGGTGCCTA
* *
73446045 ATACGACACACGAGGTGCTTGAA
1 ATACAACACACGAGGTGCCT--A
73446068 ATACAACACA
1 ATACAACACA
73446078 TAAAGTGCCT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
21 34 0.77
23 10 0.23
ACGTcount: A:0.43, C:0.25, G:0.17, T:0.15
Consensus pattern (21 bp):
ATACAACACACGAGGTGCCTA
Found at i:73459319 original size:47 final size:47
Alignment explanation
Indices: 73459265--73459450 Score: 273
Period size: 47 Copynumber: 4.0 Consensus size: 47
73459255 TTAGGATTTT
** * *
73459265 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
73459312 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73459359 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
73459406 ATGTGGTGAATATGAACATGAATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
73459451 TATTGTGAAA
Statistics
Matches: 126, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73459365 original size:22 final size:22
Alignment explanation
Indices: 73459294--73459365 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
73459284 GTATATATGA
73459294 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
* * *
73459316 GATGAATG-TGAACAT-GCATATATGT
1 GAT-AAGGCCG-A-ATGGC-CA-ATGT
73459341 GATAAGGCCGAATGGCCAATGT
1 GATAAGGCCGAATGGCCAATGT
73459363 GAT
1 GAT
73459366 GAATGTGAGC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 11 0.30
23 9 0.24
24 9 0.24
25 8 0.22
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (22 bp):
GATAAGGCCGAATGGCCAATGT
Found at i:73459414 original size:25 final size:25
Alignment explanation
Indices: 73459339--73459414 Score: 63
Period size: 23 Copynumber: 3.2 Consensus size: 25
73459329 ATGCATATAT
73459339 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
* * * *
73459364 ATGA-ATGTG-AGCAT-G-CATATGT-
1 GTGATAAG-GCCGAATGGCCA-ATGTG
73459386 GTGATAAGGCCGAATGGCCAATGTG
1 GTGATAAGGCCGAATGGCCAATGTG
73459411 GTGA
1 GTGA
73459415 ATATGAACAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 6 0.17
23 10 0.28
24 10 0.28
25 10 0.28
ACGTcount: A:0.29, C:0.13, G:0.34, T:0.24
Consensus pattern (25 bp):
GTGATAAGGCCGAATGGCCAATGTG
Found at i:73459591 original size:52 final size:48
Alignment explanation
Indices: 73459428--73459614 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
73459418 TGAACATGAA
*
73459428 TATATGTGGTAAAGCCGAATGGCTATTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
73459476 TATTTGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
73459524 CATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATGTATGAGATATG
*
73459576 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
73459615 GGCGATGTGC
Statistics
Matches: 125, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
47 1 0.01
48 78 0.62
49 1 0.01
50 2 0.02
51 1 0.01
52 41 0.33
53 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:73459596 original size:100 final size:96
Alignment explanation
Indices: 73459429--73459614 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 96
73459419 GAACATGAAT
* * *
73459429 ATATGTGGTAAAGCCGAATGGCTATTGTGAAATATGTATGAGATATGTATTTGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
73459494 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
73459525 ATATGTGGTAAAGCCGAATGG-TCAATGTGAAATATATATATATGAGATATGTATATGTGGTAAA
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG--A-A-ATATATATGAGATATGTATATGTGGTAAA
*
73459589 GCCGAATGGCTAGTGTGAAATATGTA
61 GCCGAATGGCTAATGTGAAATATGTA
73459615 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
98 1 0.01
99 1 0.01
100 52 0.64
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:73459867 original size:37 final size:37
Alignment explanation
Indices: 73459759--73459867 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
73459749 GGAAATATAT
* *
73459759 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
73459796 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
73459833 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
73459868 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:73470132 original size:17 final size:17
Alignment explanation
Indices: 73470094--73470134 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
73470084 AGAGCTCCAA
*
73470094 CGAGCTTCCAAACTGGT
1 CGAGCTTCCAAACTGAT
73470111 CGAGCTTCCAAACTGAT
1 CGAGCTTCCAAACTGAT
*
73470128 TGAGCTT
1 CGAGCTT
73470135 TTGATTATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (17 bp):
CGAGCTTCCAAACTGAT
Found at i:73474230 original size:43 final size:43
Alignment explanation
Indices: 73474183--73474296 Score: 167
Period size: 43 Copynumber: 2.7 Consensus size: 43
73474173 TATCCCAGAT
*
73474183 ATGGTCTTACATGTTATCACATATCGATGCCAATGTCCCAAAC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAAC
* *
73474226 ATGGTCTTACATGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAAAC
* *
73474269 ATGGTCTTACATGTAATTACATCTCGAT
1 ATGGTCTTACATGTAATCACATATCGAT
73474297 AATCCTAATG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
42 2 0.03
43 60 0.95
44 1 0.02
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAAAC
Found at i:73476413 original size:47 final size:44
Alignment explanation
Indices: 73476313--73476525 Score: 191
Period size: 47 Copynumber: 4.6 Consensus size: 44
73476303 TACGCGTGCT
** * * *
73476313 GATGCATGTCCCATTCATGTCTTACACT-AGCAAAACTCT-TAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGA-C-TATCTCTGTAGGC
*
73476357 GATGCATGTCCCAGACACGTCTTACACTGACTATCTCTGTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTGACTATCTCTGT--AGG-C
*
73476404 GATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTA-CC
1 GATGCATGTCCCAGACATGTCTTACACT-G-ACT-ATCTCTGTAGGC
* * *
73476450 GATAGCATGTCCCAGACATGGTCTTACAATGGCTATCAT-AGTATGGC
1 GAT-GCATGTCCCAGACAT-GTCTTACACTGACTATC-TCTGTA-GGC
73476497 TGATGCATGTCCCAGACATGTCTTACACT
1 -GATGCATGTCCCAGACATGTCTTACACT
73476526 AGCACACGTC
Statistics
Matches: 142, Mismatches: 13, Indels: 26
0.78 0.07 0.14
Matches are distributed among these distances:
43 5 0.04
44 27 0.19
45 7 0.05
46 18 0.13
47 60 0.42
48 14 0.10
49 3 0.02
50 8 0.06
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCTCTGTAGGC
Found at i:73476507 original size:94 final size:91
Alignment explanation
Indices: 73476310--73476531 Score: 256
Period size: 94 Copynumber: 2.4 Consensus size: 91
73476300 ACATACGCGT
**
73476310 GCTGATGCATGTCCCATTCATGTCTTACACTAGCA-AAACTCTTAGCCGATGCATGTCCCAGACA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAACTCTTAGCCGATGCATGTCCCAGACA
* *
73476374 CGTCTTACACTGACTATCTCTGTCGAG
66 CGTCTTACAATGACTATCTCAGTC-AG
* * *
73476401 G-TCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTA-CCGATAGCATGTCCCA
1 GCT-GATGCATGTCCCAGACATGTCTTACACTAGCAC-AAACTCT-TAGCCGAT-GCATGTCCCA
* *
73476464 GACATGGTCTTACAATGGCTATCAT-AGT-ATG
62 GACA-CGTCTTACAATGACTATC-TCAGTCA-G
73476495 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACA
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACA
73476532 CGTCTGGATG
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
90 1 0.01
91 30 0.27
93 11 0.10
94 50 0.45
95 18 0.16
96 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (91 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACAAACTCTTAGCCGATGCATGTCCCAGACA
CGTCTTACAATGACTATCTCAGTCAG
Found at i:73476558 original size:94 final size:94
Alignment explanation
Indices: 73476403--73476618 Score: 238
Period size: 94 Copynumber: 2.3 Consensus size: 94
73476393 CTGTCGAGGT
* * * * *
73476403 CGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTACCGATAGCATGTCCCAGACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCGGTACCCATAGCATGCCCCAGACA
* * *
73476468 TGGTCTTACAATGGCTATCATAGTATGGC
66 TGGTCCTACAACGGCTATCATAATATGGC
* * *
73476497 TGATGCATGTCCCAGACATGTCTTACACTAGCACACGTCT-GGATGCCCAT-GCCATGCCCCAGA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCGG-TACCCATAG-CATGCCCCAGA
* * *
73476560 CATGGTCCTACACCGGCTCTCATAATGTGGC
64 CATGGTCCTACAACGGCTATCATAATATGGC
* * **
73476591 CGAAGCATGTCCCACACACATCTTACAC
1 CGATGCATGTCCCAGACATGTCTTACAC
73476619 CGGGACACAA
Statistics
Matches: 101, Mismatches: 19, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
93 2 0.02
94 99 0.98
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCGGTACCCATAGCATGCCCCAGACA
TGGTCCTACAACGGCTATCATAATATGGC
Found at i:73481912 original size:80 final size:81
Alignment explanation
Indices: 73481768--73481969 Score: 230
Period size: 80 Copynumber: 2.5 Consensus size: 81
73481758 ATACAACCGA
* * *
73481768 ATATAACCACATGCACGAATGCCTTCGGGTCTTAGCCCGGA-TAGAACGACTTGCACAAATGCCT
1 ATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCT
* *
73481832 TTGGGTATTAGCCCGG
66 TCGGGTATTAACCCGG
* * *
73481848 ATTTAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTAGCACAATTGCC
1 ATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTAGCACAAATGCC
*
73481911 TTCGGGTCTTAACCCGG
65 TTCGGGTATTAACCCGG
** * ** * *
73481928 ATATAATTACTAGCATAAATGTCTTCGGGACTTAGCCCGGAT
1 ATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGAT
73481970 ATCATTCAAT
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
80 99 0.96
81 1 0.01
82 3 0.03
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (81 bp):
ATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTAGCACAAATGCCT
TCGGGTATTAACCCGG
Found at i:73481971 original size:40 final size:40
Alignment explanation
Indices: 73481780--73481971 Score: 206
Period size: 40 Copynumber: 4.8 Consensus size: 40
73481770 ATAACCACAT
* * * *
73481780 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAACGACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * * *
73481820 GCACAAATGCCTTTGGGTATTAGCCCGGATTTAACAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
73481860 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGTC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA-ACAACTA
* * **
73481900 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
73481940 GCATAAATGTCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
73481972 CATTCAATTG
Statistics
Matches: 127, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 126 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:73486521 original size:43 final size:43
Alignment explanation
Indices: 73486438--73486521 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 43
73486428 AGTGCAGGGG
* *
73486438 ACACACGGCCATAACACACGCCCATGGGTGTGAACTGTGTGTC
1 ACACACGGCCATAACACACGCCCATGGGTCTGAACCGTGTGTC
* * * *
73486481 ACACACGGCC-TAGACACACGCCCGTGTGTCTTACCCGTGTG
1 ACACACGGCCATA-ACACACGCCCATGGGTCTGAACCGTGTG
73486522 GACAACTAGG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.23, C:0.33, G:0.25, T:0.19
Consensus pattern (43 bp):
ACACACGGCCATAACACACGCCCATGGGTCTGAACCGTGTGTC
Found at i:73487335 original size:47 final size:45
Alignment explanation
Indices: 73487183--73487492 Score: 188
Period size: 47 Copynumber: 6.6 Consensus size: 45
73487173 TTGTTGTTGC
* *
73487183 CATGTCCCAGACATGGTCTTACACTGGC--TCTCATATAAGCGTGCTGATG
1 CATGTCCCAGACATCGTCTTACACTGGCTATCTC-TGT-AGC---C-GATG
* * * * *
73487232 CATGTCCTAGACAT-GTCTTACACTAGCACAACTCT-TAGCCGATA
1 CATGTCCCAGACATCGTCTTACACTGGC-TATCTCTGTAGCCGATG
*
73487276 CATGTCCCAGACA-CGTCTTACACTGGCTATCTCTGTCGAGGCTGATG
1 CATGTCCCAGACATCGTCTTACACTGGCTATCTCTGT--A-GCCGATG
*
73487323 CATGTCCTAGACATC-TCTTACACTGGCACTCATCTCTGT-GCCGATG
1 CATGTCCCAGACATCGTCTTACACTGG--CT-ATCTCTGTAGCCGATG
* * **
73487369 CCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGTATGGTTGATG
1 -CATGTCCCAGACATCGTCTTACACTGGCTATC-TCTGTA--GCCGATG
* * ** *
73487417 CATGTCCCAGACAT-GTTTTACACTAGCCCTCGTCTGGATGCCGATG
1 CATGTCCCAGACATCGTCTTACACTGGCTATC-TCTGTA-GCCGATG
* **
73487463 CCATGCCCCAGACATAATCTTACACTGGCT
1 -CATGTCCCAGACATCGTCTTACACTGGCT
73487493 TTCATAATGT
Statistics
Matches: 208, Mismatches: 32, Indels: 43
0.73 0.11 0.15
Matches are distributed among these distances:
43 5 0.02
44 28 0.13
45 6 0.03
46 29 0.14
47 70 0.34
48 42 0.20
49 16 0.08
50 9 0.04
51 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (45 bp):
CATGTCCCAGACATCGTCTTACACTGGCTATCTCTGTAGCCGATG
Found at i:73487438 original size:94 final size:93
Alignment explanation
Indices: 73487180--73487498 Score: 339
Period size: 94 Copynumber: 3.4 Consensus size: 93
73487170 ATATTGTTGT
*
73487180 TGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TAAGCGTGCTGATGCATGTCCTAGAC
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGT-AG-GT--TGATGCATGTCCTAGAC
*
73487244 ATGTCTTACACTAGCA--CAACTCT-TAGCCGA
62 ATGTCTTACACTAGCACTCATCTCTGT-GCCGA
* * * *
73487274 T-ACATGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGAGGCTGATGCATGTCCTAGACA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--AGGTTGATGCATGTCCTAGACA
* *
73487336 TCTCTTACACTGGCACTCATCTCTGTGCCGA
63 TGTCTTACACTAGCACTCATCTCTGTGCCGA
*
73487367 TGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGTTGATGCATGTCCCAGACATG
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA-GGTTGATGCATGTCCTAGACATG
* * * *
73487432 TTTTACACTAGCCCTCGTCT-GGATGCCGA
65 TCTTACACTAGCACTCATCTCTG-TGCCGA
* ** *
73487461 TGCCATGCCCCAGACATAATCTTACACTGGCTTTCATA
1 TGCCATGTCCCAGACATGGTCTTACACTGGCTATCATA
73487499 ATGTGGCCGA
Statistics
Matches: 190, Mismatches: 24, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
91 32 0.17
92 16 0.08
93 29 0.15
94 93 0.49
95 19 0.10
96 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (93 bp):
TGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTAGGTTGATGCATGTCCTAGACATGT
CTTACACTAGCACTCATCTCTGTGCCGA
Found at i:73487532 original size:94 final size:94
Alignment explanation
Indices: 73487322--73487534 Score: 218
Period size: 94 Copynumber: 2.3 Consensus size: 94
73487312 CGAGGCTGAT
* * * * * * *
73487322 GCATGTCCTAGACATC-TCTTACACTGGCACTCATCTCTG-TGCCGATGCCATGTCCCAGACATG
1 GCATGTCCCAGACA-CGTCTTACACTAGCCCTCGTCT-GGATGCCGATGCCATGCCCCAGACATA
* * ** *
73487385 GTCTTACACTGGCTATCATAGTATGGTTGAT
64 ATCTTACACTGGCTATCATAATATGGCCGAA
* *
73487416 GCATGTCCCAGACATGTTTTACACTAGCCCTCGTCTGGATGCCGATGCCATGCCCCAGACATAAT
1 GCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTGGATGCCGATGCCATGCCCCAGACATAAT
* *
73487481 CTTACACTGGCTTTCATAATGTGGCCGAA
66 CTTACACTGGCTATCATAATATGGCCGAA
73487510 GCATG-CCACA-AGCACGTCTTACACT
1 GCATGTCC-CAGA-CACGTCTTACACT
73487535 GGTGCACAAA
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
93 4 0.04
94 93 0.96
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
GCATGTCCCAGACACGTCTTACACTAGCCCTCGTCTGGATGCCGATGCCATGCCCCAGACATAAT
CTTACACTGGCTATCATAATATGGCCGAA
Found at i:73492501 original size:47 final size:47
Alignment explanation
Indices: 73492447--73492558 Score: 170
Period size: 47 Copynumber: 2.4 Consensus size: 47
73492437 TTAGGATTTT
*
73492447 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
* ** * *
73492494 ATGTGATGAATATGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
73492541 ATGTGATGAATGTGAATG
1 ATGTGATGAATGTGAATG
73492559 AAATTACAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
Found at i:73494031 original size:40 final size:40
Alignment explanation
Indices: 73493979--73494294 Score: 497
Period size: 40 Copynumber: 7.9 Consensus size: 40
73493969 GTTATATATG
*
73493979 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
73494019 ATTCGGGCTAAGTCCCGAAGAGCATGCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
73494059 ATCCGGGCTAAGTCCCGAAGAGCATACGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
73494099 ATCCAGGCTAAGTCCCGAAGAGCATACGTGCTGGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
73494139 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* *
73494179 ATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
73494219 ATCAGGGTTAAGTCCCGAAGAGCATTCGTACTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
*
73494259 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
73494295 ATGTGTATTC
Statistics
Matches: 256, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 256 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:73494508 original size:25 final size:25
Alignment explanation
Indices: 73494458--73494510 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
73494448 TGTGTAACAA
* *
73494458 CAAATGAATAGGGGCACTATGCGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
73494483 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
73494508 CAA
1 CAA
73494511 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.19
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:73495626 original size:124 final size:124
Alignment explanation
Indices: 73495404--73495649 Score: 302
Period size: 124 Copynumber: 2.0 Consensus size: 124
73495394 GGGGGAGAGT
* *
73495404 TGTGACACCCTTAATTTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCATAAAA
1 TGTGACACCCTTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
** *
73495469 ATAATTAACAGTCATATTCGATGCTTATTATATGTGAATATGAATGTGTGGAAGTTTCA
66 ATAATTAACAGTCATATTCGATGCTTAGAATATGTGAATATGAATGTGTGAAAGTTTCA
* * * *
73495528 TGTGACAGCCC-TAAATTGACTCTAGTCGGAAAGTGGTTTCGGGACCGCTAAACCGAGTCACCAA
1 TGTGACA-CCCTTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAA
* * * * *
73495592 AGTATTTGAATA-TGATATT-TATTG-TCTAGAATATGTGAATATGAATGTGTGAAAGTTT
65 AATAATT-AACAGTCATATTCGA-TGCT-TAGAATATGTGAATATGAATGTGTGAAAGTTT
73495650 TAAGCTTCGA
Statistics
Matches: 104, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
123 2 0.02
124 96 0.92
125 6 0.06
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (124 bp):
TGTGACACCCTTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
ATAATTAACAGTCATATTCGATGCTTAGAATATGTGAATATGAATGTGTGAAAGTTTCA
Found at i:73497481 original size:30 final size:30
Alignment explanation
Indices: 73497426--73497585 Score: 213
Period size: 29 Copynumber: 5.5 Consensus size: 30
73497416 ATAGTGAATC
73497426 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
73497455 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
73497485 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAGCT
* *
73497514 CGCACACTTAGTGCTGTATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AGCT
* * * * *
73497542 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAGCT
73497572 CGCACACTTAGTGC
1 CGCACACTTAGTGC
73497586 CAATCTTGTC
Statistics
Matches: 120, Mismatches: 5, Indels: 11
0.88 0.04 0.08
Matches are distributed among these distances:
27 2 0.02
28 23 0.19
29 47 0.39
30 47 0.39
31 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAGCT
Found at i:73497518 original size:59 final size:57
Alignment explanation
Indices: 73497426--73497585 Score: 214
Period size: 59 Copynumber: 2.8 Consensus size: 57
73497416 ATAGTGAATC
*
73497426 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTC-AGCT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAA---TCAAACT
*
73497485 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTGTATAATCAAACT
1 CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
* * * * *
73497542 CGCACACTTAGTGCTGTACAATTTTAAACCCGCACACTTAGTGC
1 CGCACACTTAGTGCTATA-TATTTTCAGCTCGCACACTTAGTGC
73497586 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
56 2 0.02
57 20 0.22
58 21 0.23
59 49 0.53
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (57 bp):
CGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATCAAACT
Found at i:73500687 original size:40 final size:40
Alignment explanation
Indices: 73500547--73500768 Score: 301
Period size: 40 Copynumber: 5.5 Consensus size: 40
73500537 TATTCGGATG
* *
73500547 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
73500587 ATATCCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
73500629 ATA-CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
**
73500668 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
73500708 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
73500748 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
73500769 ATACTTGGGT
Statistics
Matches: 164, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 41 0.25
40 84 0.51
41 9 0.05
42 27 0.16
43 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:73508822 original size:40 final size:40
Alignment explanation
Indices: 73508767--73508990 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
73508757 TATTCGGATG
73508767 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
73508807 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
73508850 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
73508890 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
73508930 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
73508970 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
73508991 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:73508910 original size:83 final size:80
Alignment explanation
Indices: 73508771--73508990 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
73508761 CGGATGATAT
* **
73508771 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
73508836 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
73508854 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
73508919 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
73508934 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
73508991 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:73511359 original size:124 final size:124
Alignment explanation
Indices: 73511137--73511382 Score: 318
Period size: 124 Copynumber: 2.0 Consensus size: 124
73511127 GGGGGAGAGT
* *
73511137 TGTGACACCCCTAATTTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCATAAAA
1 TGTGACACCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
** *
73511202 ATAATTAACAGTCATATTCGATGCTTATTATATGTGAATATGAATGTGTGGAAGTTTCA
66 ATAATTAACAGTCATATTCGATGCTTAAAATATGTGAATATGAATGTGTGAAAGTTTCA
* * * *
73511261 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCGCTAAACCGAGTCACCAAA
1 TGTGACACCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
* * * * *
73511326 GTATTTGAATA-TGATATT-TATTG-TCTAAAATATGTGAATATGAATGTGTGAAAGTTT
66 ATAATT-AACAGTCATATTCGA-TGCT-TAAAATATGTGAATATGAATGTGTGAAAGTTT
73511383 TAAGCTTCGA
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
123 2 0.02
124 100 0.95
125 3 0.03
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (124 bp):
TGTGACACCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
ATAATTAACAGTCATATTCGATGCTTAAAATATGTGAATATGAATGTGTGAAAGTTTCA
Found at i:73516055 original size:40 final size:40
Alignment explanation
Indices: 73516000--73516223 Score: 306
Period size: 40 Copynumber: 5.5 Consensus size: 40
73515990 TATTCGGATG
73516000 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
73516040 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * *
73516083 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
73516123 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
73516163 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
73516203 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
73516224 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
39 13 0.08
40 114 0.69
41 1 0.01
43 37 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:73516143 original size:83 final size:80
Alignment explanation
Indices: 73516004--73516223 Score: 302
Period size: 83 Copynumber: 2.7 Consensus size: 80
73515994 CGGATGATAT
* **
73516004 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
73516069 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
73516087 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
73516152 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
73516167 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
73516224 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.35
81 2 0.02
83 64 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:73518598 original size:124 final size:124
Alignment explanation
Indices: 73518376--73518621 Score: 291
Period size: 124 Copynumber: 2.0 Consensus size: 124
73518366 GGGGGAGAGT
** *
73518376 TGTGACACCCCTACTTTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCATAAAA
1 TGTGACACCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
** *
73518441 ATAATTAACAGTCATATTCGATGCTTATTATATGTGAATATGAATGTCTGGAAGTTTCA
66 ATAATTAACAGTCATATTCGATGCTTAAAATATGTGAATATGAATGTCTGAAAGTTTCA
* * * * *
73518500 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCGCTAAATCGAGTCACCAAA
1 TGTGACACCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
* * * * * *
73518565 GTATTTGAATA-TGATATT-TATTG-TCTAAAATATGTGAATATGAATGTGTGAAAGTTT
66 ATAATT-AACAGTCATATTCGA-TGCT-TAAAATATGTGAATATGAATGTCTGAAAGTTT
73518622 TAAGCTTCGA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
123 2 0.02
124 97 0.95
125 3 0.03
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (124 bp):
TGTGACACCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAAAA
ATAATTAACAGTCATATTCGATGCTTAAAATATGTGAATATGAATGTCTGAAAGTTTCA
Found at i:73522791 original size:25 final size:25
Alignment explanation
Indices: 73522763--73522820 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
73522753 CGAATGGCCA
73522763 ATGTGATGAATATGAACATGCATAT
1 ATGTGATGAATATGAACATGCATAT
*
73522788 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATATGAACATGCATAT
73522813 ATGT-ATGA
1 ATGTGATGA
73522821 TAAGGCCGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 4 0.12
25 28 0.88
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATATGAACATGCATAT
Found at i:73522836 original size:74 final size:72
Alignment explanation
Indices: 73522717--73522864 Score: 233
Period size: 74 Copynumber: 2.0 Consensus size: 72
73522707 TAGGATTTTT
*** *
73522717 TGTGATGAATGTGAGTGTGTATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
1 TGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
73522782 GCATATA
66 GCATATA
*
73522789 TGTGATGAATGTGAACATGCATATATGTATGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 TGTGATGAATGTGAACATGCATATATG-A-GATAAGGCCGAATGGCCAATGTGATGAATATGAAC
73522854 ATGCATATA
64 ATGCATATA
73522863 TG
1 TG
73522865 AGATAAGGCC
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
72 23 0.33
73 1 0.01
74 45 0.65
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (72 bp):
TGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATATGAACAT
GCATATA
Found at i:73522888 original size:47 final size:47
Alignment explanation
Indices: 73522788--73523074 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
73522778 ACATGCATAT
73522788 ATGTGATGAATGTGAACATGCATATATGTATGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATG--TGATAAGGCCGAATGGCCA
*
73522837 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
73522884 ATGTGATGAATGTGACCATGCATATGTGTGATAAGGCCAAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
73522931 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCTGAATGACCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
73522978 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * * *
73523025 ATGTGATGAACGTGGAA-GTGTATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCA
73523072 ATG
1 ATG
73523075 CAAAATGTGT
Statistics
Matches: 218, Mismatches: 19, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 187 0.86
48 3 0.01
49 28 0.13
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:73523104 original size:46 final size:46
Alignment explanation
Indices: 73523048--73523166 Score: 202
Period size: 46 Copynumber: 2.6 Consensus size: 46
73523038 GGAAGTGTAT
*
73523048 ATATGTGGTAAAGCCGAATGGCTAATGCAAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGG
* *
73523094 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGG
*
73523140 ATATGTGGTAAAGCCAAATGGCTAATG
1 ATATGTGGTAAAGCCGAATGGCTAATG
73523167 TGAGATACAT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.24
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCAAAACGTGTATGAGATGG
Found at i:73523180 original size:46 final size:45
Alignment explanation
Indices: 73523048--73523184 Score: 168
Period size: 46 Copynumber: 3.0 Consensus size: 45
73523038 GGAAGTGTAT
* **
73523048 ATATGTGGTAAAGCCGAATGGCTAATGCAAAATGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGC-GAATACGTATGAGATGG
*
73523094 ATATGAGGTAAAGCCGAATGGCTAATGCGAA-ACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAATAC--GTATGAGATGG
* * *
73523140 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATACATATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGA-ATACGTATGAGATG
73523185 TGTATATATA
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
45 2 0.03
46 74 0.94
47 1 0.01
48 2 0.03
ACGTcount: A:0.36, C:0.09, G:0.30, T:0.25
Consensus pattern (45 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAATACGTATGAGATGG
Found at i:73528581 original size:25 final size:25
Alignment explanation
Indices: 73528539--73528596 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 25
73528529 ATAAAACCTA
* *
73528539 AAAATGAAATAGTATTAAAGGAAGAT
1 AAAAT-AAAAAGTATTAAAAGAAGAT
73528565 AAAATAAAAAGTATTAAAAGAAGAT
1 AAAATAAAAAGTATTAAAAGAAGAT
73528590 -AAATAAA
1 AAAATAAA
73528597 GATAAAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 7 0.23
25 18 0.60
26 5 0.17
ACGTcount: A:0.66, C:0.00, G:0.14, T:0.21
Consensus pattern (25 bp):
AAAATAAAAAGTATTAAAAGAAGAT
Found at i:73530359 original size:11 final size:11
Alignment explanation
Indices: 73530343--73530368 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73530333 ATCCCTGTTA
73530343 TTTTAATTTAG
1 TTTTAATTTAG
73530354 TTTTAATTTAG
1 TTTTAATTTAG
73530365 TTTT
1 TTTT
73530369 TCTATTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTAATTTAG
Found at i:73533109 original size:19 final size:19
Alignment explanation
Indices: 73533085--73533130 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
73533075 CTTTCTTTCC
73533085 TTTGCATT-CATCACATGCA
1 TTTGCATTGCATCACAT-CA
**
73533104 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATCACATCA
73533123 TTTGCATT
1 TTTGCATT
73533131 AGATTTTCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATCACATCA
Found at i:73536668 original size:3 final size:3
Alignment explanation
Indices: 73536660--73536685 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
73536650 AGTAGGATGG
73536660 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
73536686 TCTTCCCCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:73537037 original size:64 final size:64
Alignment explanation
Indices: 73536936--73537123 Score: 295
Period size: 64 Copynumber: 2.9 Consensus size: 64
73536926 ACATTCATAA
*
73536936 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
73537000 CACATCTAGGTAAGAGCATTTAATTCATTTCGATCATAGCATCATAATTATTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * * * *
73537064 CACATCTAGTTAGGAGTATTTAATTCATTTTGATCATAGCATCCTAGTCATTTGGCATAA
1 CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAA
73537124 ACATAGGCAT
Statistics
Matches: 112, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 112 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTAATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:73537447 original size:87 final size:87
Alignment explanation
Indices: 73537203--73537764 Score: 668
Period size: 87 Copynumber: 6.5 Consensus size: 87
73537193 CCAAAACAGT
* * *
73537203 AGCAGATCGAAGAAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACA-ACTGAAGATTGTAGAT
1 AGCAAATCGAAG-AAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGAT
*
73537267 CTTGTCTCCCTAAACAATAGTGG
65 CTTGTCTCCCTAAACAGTAGTGG
* * * * *
73537290 AGCAAATCGAAGAAGCAGGCCTTAA-CCCCTAAATAGTAGGGTAACAGGTTGAAGATCGTAGATC
1 AGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATC
*
73537354 TTGTCTCCGTAAACAGTAGTGG
66 TTGTCTCCCTAAACAGTAGTGG
* *
73537376 AGCAAATCGAAGAAGGAAGCCTTAACCCCCTAAGTAGTAGCGTAACAGGCTAAAGATTGTAGATC
1 AGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATC
73537441 TTGTCTCCCTAAACAGTAGTGG
66 TTGTCTCCCTAAACAGTAGTGG
**
73537463 AGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAACAGTAGGGTAACAGGCTAAAGATTGTAGATC
1 AGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATC
*
73537528 TTGTCTCCCTAAACAGTAGTAG
66 TTGTCTCCCTAAACAGTAGTGG
* * *
73537550 AGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGTGTAACAGGCTAAAGATTGCAAATC
1 AGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATC
* * *
73537615 TTGTCTCCCTGAAGCTGGAGTGG
66 TTGTCTCCCT-AAACAGTAGTGG
* * * * ** * * **
73537638 AACAGATCAAAGACGGTGAGCCTTGACCCCCTAAGCAGTAGGGT-ACAAGGCT-AA-ATTACAGA
1 AGCAAATCGAAGA-AGCAAGCCTTAACCCCCTAAGTAGTAGGGTAAC-AGGCTAAAGATTGTAGA
* ** *
73537700 TCTTATCTCCCTAAGTAGTAGTTG
64 TCTTGTCTCCCTAAACAGTAGTGG
** * * *
73537724 AGCGGATCAAAGATGGTCAA-CCTTAACCCCCTAAGCAGTAG
1 AGCAAATCGAAGA-AG-CAAGCCTTAACCCCCTAAGTAGTAG
73537765 TGGACCAGGT
Statistics
Matches: 417, Mismatches: 52, Indels: 13
0.87 0.11 0.03
Matches are distributed among these distances:
85 20 0.05
86 110 0.26
87 236 0.57
88 22 0.05
89 29 0.07
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (87 bp):
AGCAAATCGAAGAAGCAAGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAGATTGTAGATC
TTGTCTCCCTAAACAGTAGTGG
Found at i:73537496 original size:43 final size:43
Alignment explanation
Indices: 73537447--73537591 Score: 116
Period size: 43 Copynumber: 3.3 Consensus size: 43
73537437 GATCTTGTCT
73537447 CCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTAACC
1 CCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTAACC
* ** * * * * ** *
73537490 CCCTAAACAGTAG-GGTAAC-AGGCTAAAGATTG-TAGATCTTGTCT
1 CCCTAAACAGTAGTGG-AGCAAATC-GAAGA-AGCAAG-CCTTAACC
*
73537534 CCCTAAACAGTAGTAGAGCAAATCGAAGAAGCAAGCCTTAACC
1 CCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTAACC
**
73537577 CCCTAAGTAGTAGTG
1 CCCTAAACAGTAGTG
73537592 TAACAGGCTA
Statistics
Matches: 71, Mismatches: 24, Indels: 14
0.65 0.22 0.13
Matches are distributed among these distances:
42 4 0.06
43 38 0.54
44 26 0.37
45 3 0.04
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (43 bp):
CCCTAAACAGTAGTGGAGCAAATCGAAGAAGCAAGCCTTAACC
Found at i:73537951 original size:88 final size:88
Alignment explanation
Indices: 73537790--73538016 Score: 294
Period size: 88 Copynumber: 2.6 Consensus size: 88
73537780 TCAATAGCAG
* * * * *
73537790 ATCTCCTTGAAGTTTTAGCGGAGTAGATCGAGGCTACAAATCTCCTCTCCCCGGAATGGCATTGG
1 ATCTTCTTGAAGTTTTAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCCGAAATGGCATTGA
* *
73537855 AGCGGCTCGAAGCCACCATTCGT
66 AGCAGCTCGAAGCCACAATTCGT
* * * * **
73537878 ATCTTCTTGAAATTTCAGCAGAGTAGATCGAAGCTACAAACCTCTTCTCCTTGAAATGGCATTGA
1 ATCTTCTTGAAGTTTTAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCCGAAATGGCATTGA
*
73537943 AGCAGCTCGAAGCCACAATTCTT
66 AGCAGCTCGAAGCCACAATTCGT
* *
73537966 ATC-TCATTGAAGTTTTAGCGGAGTAAATCAAAGCTACAAATCTCTTCTCCC
1 ATCTTC-TTGAAGTTTTAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCC
73538017 TAAAATTATA
Statistics
Matches: 117, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
87 2 0.02
88 115 0.98
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (88 bp):
ATCTTCTTGAAGTTTTAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCCGAAATGGCATTGA
AGCAGCTCGAAGCCACAATTCGT
Found at i:73538918 original size:16 final size:15
Alignment explanation
Indices: 73538897--73538927 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
73538887 CTTATATTCG
73538897 AAAGAAAAATAGAAAA
1 AAAGAAAAA-AGAAAA
73538913 AAAGAAAAAAGAAAA
1 AAAGAAAAAAGAAAA
73538928 GAGGGTCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (15 bp):
AAAGAAAAAAGAAAA
Found at i:73545743 original size:13 final size:12
Alignment explanation
Indices: 73545725--73545754 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
73545715 AAATAAAGTG
73545725 GTTAATTAGTTTA
1 GTTAATTAG-TTA
73545738 GTTAATTAGTTA
1 GTTAATTAGTTA
73545750 GTTAA
1 GTTAA
73545755 AACAATCCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (12 bp):
GTTAATTAGTTA
Found at i:73554615 original size:40 final size:41
Alignment explanation
Indices: 73554578--73554801 Score: 234
Period size: 40 Copynumber: 5.6 Consensus size: 41
73554568 GCTACTCGTT
* *
73554578 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
*
73554618 CAAATGCCTTCGGGACTTAACCCGG-AATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
*
73554658 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
* ** *
73554697 CAAATGCCTT-TGGATCTTAGTTCGG-ATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTAATTAGTAACTCGCA
** * *
73554737 CAAATGCCTTC-GGATCTTAGTTCGG--ATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTAAT-TAGTAAC-TCGCA
73554778 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
73554802 ACATCATTCG
Statistics
Matches: 162, Mismatches: 13, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
38 3 0.02
39 34 0.21
40 113 0.70
41 12 0.07
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGTAATTAGTAACTCGCA
Found at i:73554689 original size:79 final size:79
Alignment explanation
Indices: 73554578--73554802 Score: 267
Period size: 79 Copynumber: 2.8 Consensus size: 79
73554568 GCTACTCGTT
* * *
73554578 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
73554643 AATTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * **
73554658 CAAATGCCTTCGGGCTTAGCCC-GAAATTAGTAACTCGCACAAATGCCTT-TGGATCTTAGTTCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
73554721 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* ** * *
73554737 CAAATGCCTTCGGATCTTAGTTCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
73554801 GA
64 GA
73554803 CATCATTCGA
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 5 0.04
79 63 0.52
80 40 0.33
81 14 0.11
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:73566844 original size:43 final size:42
Alignment explanation
Indices: 73566731--73566844 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 42
73566721 TGATTATATA
*
73566731 TAAGACCATGTCTGGGACATTGGCATCATTATACAATTACGTG
1 TAAGACCATGTCT-GGACATTGGCATCGTTATACAATTACGTG
* * *
73566774 TAAGACCATGCCTTGAGCATTGGCATCGTTA-ATCAATTTCGTG
1 TAAGACCATGTCTGGA-CATTGGCATCGTTATA-CAATTACGTG
* *
73566817 TAAGACCCTGTCTAGGACAGTGGCATCG
1 TAAGACCATGTCT-GGACATTGGCATCG
73566845 ATATGTGATA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 3 0.05
43 55 0.92
44 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (42 bp):
TAAGACCATGTCTGGACATTGGCATCGTTATACAATTACGTG
Found at i:73568394 original size:55 final size:55
Alignment explanation
Indices: 73568307--73568561 Score: 273
Period size: 55 Copynumber: 4.8 Consensus size: 55
73568297 GTTAGGGTTT
*
73568307 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCATAAGGC
* * * * *
73568362 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT-TCATAAGGC
* * *
73568417 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
*
73568470 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC--AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
* * * *
73568519 AATGATACCAAGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
73568562 GTACCCGTGT
Statistics
Matches: 172, Mismatches: 22, Indels: 18
0.81 0.10 0.08
Matches are distributed among these distances:
49 39 0.23
52 6 0.03
53 43 0.25
54 13 0.08
55 67 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCATAAGGC
Found at i:73568513 original size:108 final size:110
Alignment explanation
Indices: 73568314--73568514 Score: 327
Period size: 108 Copynumber: 1.8 Consensus size: 110
73568304 TTTAAGGATA
*
73568314 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
73568379 CCATGTCAAGACATGGCATTGATAAGTTACCATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
* *
73568424 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
73568486 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
73568515 TCAAAATGAT
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.56
109 7 0.08
110 27 0.32
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGCAAAGGTC
Found at i:73568769 original size:16 final size:16
Alignment explanation
Indices: 73568748--73568778 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
73568738 ATAAATTTGA
73568748 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
73568764 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
73568779 AGAGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:73573667 original size:40 final size:40
Alignment explanation
Indices: 73573509--73573672 Score: 150
Period size: 40 Copynumber: 4.1 Consensus size: 40
73573499 CGGGATTTAA
* * * * **
73573509 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAA
1 CCGGATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGC
* *** * * *
73573549 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGC
* **
73573589 CCGGATATAACAACTCGCATGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGC
* *
73573629 CCGGATATAATC-ACTAGCAAAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTAGCAAAAATGCCTTCGGGTCTTAGC
73573669 CCGG
1 CCGG
73573673 GTATCATTCA
Statistics
Matches: 101, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
40 100 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCAAAAATGCCTTCGGGTCTTAGC
Found at i:73579306 original size:55 final size:53
Alignment explanation
Indices: 73579201--73579452 Score: 221
Period size: 55 Copynumber: 4.8 Consensus size: 53
73579191 AGGGTTTAAT
* *
73579201 GATACCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGCAAG
* ** * * *
73579256 GAAATAATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACCATAAGGAAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--CATAAGG-CAAG
* * *
73579312 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
* * *
73579364 GATACCATGTAAAACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---AAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGCAAG
** * * *
73579413 GATACCACATAAGACCATGACAAGTCATGGCAATGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
73579453 GTACCCATGT
Statistics
Matches: 163, Mismatches: 28, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 38 0.23
51 1 0.01
52 8 0.05
53 42 0.26
54 8 0.05
55 62 0.38
56 4 0.02
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
Found at i:73579404 original size:108 final size:110
Alignment explanation
Indices: 73579205--73579405 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
73579195 TTTAATGATA
* *
73579205 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAATAATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACAATGTAAAA
*
73579270 CCATGTCAAGACATGGCATTGATAAGTTACCATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGAAAAGGTC
* * * *
73579315 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAA
1 CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGAAACAATGTAAA
*
73579377 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
73579406 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.56
109 7 0.09
110 26 0.32
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGAAACAATGTAAAA
CCATGTCAAGACATGGCAATGATAAGTTACCATAAGGAAAAGGTC
Found at i:73582545 original size:21 final size:22
Alignment explanation
Indices: 73582512--73582552 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
73582502 TTCATTTATG
*
73582512 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
73582533 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
73582553 CAATACATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:73582984 original size:26 final size:26
Alignment explanation
Indices: 73582955--73583014 Score: 66
Period size: 28 Copynumber: 2.2 Consensus size: 26
73582945 GCCCTTTGAA
* * *
73582955 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
73582981 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
*
73583009 CCATTC
1 TCATTC
73583015 TCAATATTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
26 5 0.18
27 2 0.07
28 21 0.75
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:73583000 original size:28 final size:28
Alignment explanation
Indices: 73582969--73583031 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
73582959 TCGATATTTT
*
73582969 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
73582997 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
73583025 GTACACT
1 GCACACT
73583032 GAGTTCAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:73596844 original size:46 final size:48
Alignment explanation
Indices: 73596777--73596897 Score: 156
Period size: 48 Copynumber: 2.6 Consensus size: 48
73596767 TGTGAGCCAA
* * **
73596777 TGTAAGACATGTCTATGACATGCATC-AGCT-TGGAGACGAGAGCTAG
1 TGTAAGACATGTCTAGGACATGCATCGACCTCAAGAGACGAGAGCTAG
* * * *
73596823 TGTAAGACATGTCTAGGACATGCATCGACCTCAAGATATGCGTGCTAG
1 TGTAAGACATGTCTAGGACATGCATCGACCTCAAGAGACGAGAGCTAG
73596871 TGTAAGACATGTCTAGGACATGCATCG
1 TGTAAGACATGTCTAGGACATGCATCG
73596898 GCAGCATTGT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
46 25 0.38
47 3 0.05
48 37 0.57
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (48 bp):
TGTAAGACATGTCTAGGACATGCATCGACCTCAAGAGACGAGAGCTAG
Found at i:73601550 original size:39 final size:39
Alignment explanation
Indices: 73601496--73601616 Score: 215
Period size: 39 Copynumber: 3.1 Consensus size: 39
73601486 ATTACCAGCA
* *
73601496 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
73601535 CCAGCACGAAGCCTGCGGGACTTTAGCCTGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73601574 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
73601613 CCAG
1 CCAG
73601617 TGTCTTGCAT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:73608980 original size:13 final size:13
Alignment explanation
Indices: 73608962--73608988 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73608952 TAGTTTAATA
73608962 AGTTAATTAGTTT
1 AGTTAATTAGTTT
73608975 AGTTAATTAGTTT
1 AGTTAATTAGTTT
73608988 A
1 A
73608989 ATAAACAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (13 bp):
AGTTAATTAGTTT
Found at i:73612071 original size:162 final size:162
Alignment explanation
Indices: 73611804--73612128 Score: 632
Period size: 162 Copynumber: 2.0 Consensus size: 162
73611794 AATTAATCAG
73611804 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
1 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
*
73611869 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGGTTTACATAAA
66 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGATTTACATAAA
*
73611934 TATCATATACTATTTCAACCTTCTTTATTAAC
131 AATCATATACTATTTCAACCTTCTTTATTAAC
73611966 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
1 CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
73612031 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGATTTACATAAA
66 AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGATTTACATAAA
73612096 AATCATATACTATTTCAACCTTCTTTATTAAC
131 AATCATATACTATTTCAACCTTCTTTATTAAC
73612128 C
1 C
73612129 AATTTGGCAT
Statistics
Matches: 161, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
162 161 1.00
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (162 bp):
CCAAACTAATCTCAAATCATCAATTTATAGACCATTTCAATACCAATCTCATCAAAGCTGATACC
AGAACCATTTACTTAACTAAATCACATACCAATTAACAAGATTCATAAGCCAAGATTTACATAAA
AATCATATACTATTTCAACCTTCTTTATTAAC
Found at i:73614318 original size:40 final size:38
Alignment explanation
Indices: 73614149--73614335 Score: 146
Period size: 40 Copynumber: 4.8 Consensus size: 38
73614139 TGAGAAATTG
* * *
73614149 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
73614189 AAT-TATATCCGGGTTAA-ACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
73614225 AGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
73614265 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
73614305 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
73614336 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
36 4 0.03
37 2 0.02
38 2 0.02
39 22 0.19
40 87 0.74
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:73622200 original size:40 final size:38
Alignment explanation
Indices: 73622031--73622217 Score: 146
Period size: 40 Copynumber: 4.8 Consensus size: 38
73622021 TGAGAAATTG
* * *
73622031 AATG-ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGA
1 AATGTATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCA
* * *
73622071 AAT-TATATCCGGGTTAA-ACCCGAAGGCAATTGTGCT
1 AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
73622107 AGTGGCTACATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 AAT-G-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* *
73622147 AGTTGTTAAATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 A-ATG-TATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
* * *
73622187 AATCGTGATATCCGGGTTAAGTCCCGTAGGC
1 AAT-GT-ATATCCGGGCTAAGACCCGAAGGC
73622218 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
36 4 0.03
37 2 0.02
38 2 0.02
39 22 0.19
40 87 0.74
41 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (38 bp):
AATGTATATCCGGGCTAAGACCCGAAGGCATTTGTGCA
Found at i:73624344 original size:43 final size:42
Alignment explanation
Indices: 73624278--73624390 Score: 154
Period size: 43 Copynumber: 2.6 Consensus size: 42
73624268 TACCATACCA
* * * * *
73624278 ATGCCATATCCCAGATATGGTCTTACAGGTAATTTCATATCG
1 ATGCCATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
73624320 ATGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
*
73624363 ATACCCATAGCCCAGCTATGGTCTTACA
1 AT-GCCATAGCCCAGCTATGGTCTTACA
73624391 TGTATTATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
42 5 0.08
43 56 0.89
44 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGCCATAGCCCAGCTATGGTCTTACACGAAATCTCATATCG
Found at i:73629761 original size:27 final size:27
Alignment explanation
Indices: 73629732--73629876 Score: 209
Period size: 27 Copynumber: 5.4 Consensus size: 27
73629722 CCCCAAAGTA
* * *
73629732 GGTAAAATGACCATAATGCCCCTATAA
1 GGTAAAATGACCGTAATGCCCCTGTAG
73629759 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
73629786 GGTAAAATGATCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
*
73629813 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATGCCCCTGTAG
** * *
73629840 GGTAAAATGATTGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATGCCCCTGTAG
73629867 GGTAAAATGA
1 GGTAAAATGA
73629877 TGATTATGCC
Statistics
Matches: 109, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 109 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATGCCCCTGTAG
Found at i:73630258 original size:28 final size:28
Alignment explanation
Indices: 73630204--73630259 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
73630194 AGTGTAGTGA
** * *
73630204 TACTGTATTGGGCTTAGGCCTACACTGT
1 TACTGTATAAGGCTAAGGCCCACACTGT
*
73630232 TACTGTATAAGGCTAAGGCCCAGACTGT
1 TACTGTATAAGGCTAAGGCCCACACTGT
73630260 ACAGATACTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.30
Consensus pattern (28 bp):
TACTGTATAAGGCTAAGGCCCACACTGT
Found at i:73630963 original size:27 final size:26
Alignment explanation
Indices: 73630912--73630973 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
73630902 TGGAATAGGT
*
73630912 TTTTTTAAA-TTTTTCTCAAAATTGGG
1 TTTTTAAAAGTTTTTCTCAAAATT-GG
*
73630938 TTTTTAAAAGTTTTTCT-AAACCTTGG
1 TTTTTAAAAGTTTTTCTCAAA-ATTGG
*
73630964 TTTTTGAAAG
1 TTTTTAAAAG
73630974 AGATGATTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 22 0.71
27 9 0.29
ACGTcount: A:0.27, C:0.08, G:0.13, T:0.52
Consensus pattern (26 bp):
TTTTTAAAAGTTTTTCTCAAAATTGG
Found at i:73633797 original size:27 final size:26
Alignment explanation
Indices: 73633762--73633987 Score: 229
Period size: 27 Copynumber: 8.4 Consensus size: 26
73633752 CCACAAAATA
*
73633762 GGTAAAATGTCCGTAATGTCCCTGTAG
1 GGTAAAATGACCGTAATG-CCCTGTAG
*
73633789 GGTAAAATGACCGTAATGCCCTTATAG
1 GGTAAAATGACCGTAATGCCC-TGTAG
* *
73633816 GGTGAAATGACCGTATTGCCCTTGTAG
1 GGTAAAATGACCGTAATGCCC-TGTAG
* ** *
73633843 GGTAAATTGATTGTAATGCCTATGTAG
1 GGTAAAATGACCGTAATGCC-CTGTAG
*
73633870 GGTAAAATGACCGTAATGCCTCTATAG
1 GGTAAAATGACCGTAATGCC-CTGTAG
* *
73633897 GGTAAAATGACCGCAATGCCCCT-AAG
1 GGTAAAATGACCGTAATG-CCCTGTAG
* * *
73633923 GATAAAAAGACCGTAATGCCCTTATAG
1 GGTAAAATGACCGTAATGCCC-TGTAG
* *
73633950 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAAT-GCCCTGTAG
73633977 GGTAAAATGAC
1 GGTAAAATGAC
73633988 GATTATGCCC
Statistics
Matches: 166, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
25 3 0.02
26 21 0.13
27 137 0.83
28 5 0.03
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (26 bp):
GGTAAAATGACCGTAATGCCCTGTAG
Found at i:73637756 original size:43 final size:43
Alignment explanation
Indices: 73637708--73637807 Score: 137
Period size: 43 Copynumber: 2.3 Consensus size: 43
73637698 ATATCCCAAA
* * * *
73637708 TATGGTCTTACATGTAATTTCATATCGATGCCAATAGCCCAGC
1 TATGGTCTTACACGAAATCTCATATCGATGCCAATAACCCAGC
* * *
73637751 TATGGTCTTACGCGAAATCTCATATTGATGCCAGTAACCCAGC
1 TATGGTCTTACACGAAATCTCATATCGATGCCAATAACCCAGC
73637794 TATGGTCTTACACG
1 TATGGTCTTACACG
73637808 TATTATAATC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
TATGGTCTTACACGAAATCTCATATCGATGCCAATAACCCAGC
Found at i:73640040 original size:27 final size:28
Alignment explanation
Indices: 73640010--73640080 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 28
73640000 TATTTTTATG
* *
73640010 CATGTTTTTAATATGTCATAGT-TAGTA
1 CATGTTTTTAATATGTCATACTCTACTA
* * *
73640037 CATGTTATTAATTTGTCTTACTCTACTA
1 CATGTTTTTAATATGTCATACTCTACTA
*
73640065 CATATTTTTAATATGT
1 CATGTTTTTAATATGT
73640081 TCTAGCTTCA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
27 18 0.51
28 17 0.49
ACGTcount: A:0.28, C:0.11, G:0.10, T:0.51
Consensus pattern (28 bp):
CATGTTTTTAATATGTCATACTCTACTA
Found at i:73647624 original size:22 final size:22
Alignment explanation
Indices: 73647599--73647649 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
73647589 GAGTTTATCC
*
73647599 ACAAATTAGTGGTGGCATGTCA
1 ACAAATGAGTGGTGGCATGTCA
73647621 ACAAATGAGTGGTGGCATGTCA
1 ACAAATGAGTGGTGGCATGTCA
73647643 ACAAATG
1 ACAAATG
73647650 GTGTTTTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (22 bp):
ACAAATGAGTGGTGGCATGTCA
Found at i:73648562 original size:25 final size:25
Alignment explanation
Indices: 73648534--73648585 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
73648524 GATCTTTATA
73648534 TGTGAAAACAATAGAAACTAT-AGAT
1 TGTGAAAACAATAGAAACT-TCAGAT
**
73648559 TGTGAAAATGATAGAAACTTCAGAT
1 TGTGAAAACAATAGAAACTTCAGAT
73648584 TG
1 TG
73648586 AGACAAACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 23 0.96
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27
Consensus pattern (25 bp):
TGTGAAAACAATAGAAACTTCAGAT
Done.