Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 237 of 325
Found at i:74296311 original size:136 final size:137
Alignment explanation
Indices: 74296066--74296351 Score: 529
Period size: 136 Copynumber: 2.1 Consensus size: 137
74296056 GAGTAGTCTC
74296066 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
74296131 TGTTATCTGAATAATGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
74296196 ACTGTTA
131 ACTGTTA
*
74296203 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
74296267 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
74296332 ACTGTTA
131 ACTGTTA
**
74296339 CCTGAATGGGCTT
1 CCCAAATGGGCTT
74296352 AGGCCCAATA
Statistics
Matches: 145, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
136 125 0.86
137 20 0.14
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Found at i:74299230 original size:6 final size:5
Alignment explanation
Indices: 74299191--74299250 Score: 93
Period size: 5 Copynumber: 11.4 Consensus size: 5
74299181 AATTTGTGAA
74299191 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAGAT AAAGAT AAAGAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAA-AT AAA-AT
74299239 AAAAT AAAAT AA
1 AAAAT AAAAT AA
74299251 GGAGCACACA
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
5 37 0.69
6 17 0.31
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:74304123 original size:21 final size:21
Alignment explanation
Indices: 74304095--74304154 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
74304085 ACGGGACAGT
*
74304095 TGACGTGGCTAGTTAACTAGC
1 TGACGTGGCTAGTTAACTAAC
*
74304116 TGATGTGGCTAGTTAACTAAC
1 TGACGTGGCTAGTTAACTAAC
* *
74304137 TGACGTGGCCAATTAACT
1 TGACGTGGCTAGTTAACT
74304155 TGCCACGTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (21 bp):
TGACGTGGCTAGTTAACTAAC
Found at i:74304192 original size:3 final size:3
Alignment explanation
Indices: 74304184--74304259 Score: 82
Period size: 3 Copynumber: 25.7 Consensus size: 3
74304174 AGCAGGAGGG
* * * * *
74304184 TCT TCT TCT TCT TCT TCT TCT CCT TCT CCT TCT CCT TCT CCT TCT CCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
74304232 TCT CCT T-T TCT TCT TCG TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
74304260 AGTTAACCAT
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
2 2 0.03
3 56 0.97
ACGTcount: A:0.00, C:0.41, G:0.01, T:0.58
Consensus pattern (3 bp):
TCT
Found at i:74304757 original size:34 final size:35
Alignment explanation
Indices: 74304694--74304764 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 35
74304684 TAACAATTAG
*
74304694 TTGAGGTTCAAAAAAAGGTCGTCATCTTCAAAATT
1 TTGAGGTTCAAAAAAAGGTCGTCACCTTCAAAATT
* *
74304729 TTGAGGTT-AAAAAAATGTCTTCACCTTCAAAATT
1 TTGAGGTTCAAAAAAAGGTCGTCACCTTCAAAATT
74304763 TT
1 TT
74304765 CAAGTCTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
34 25 0.76
35 8 0.24
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (35 bp):
TTGAGGTTCAAAAAAAGGTCGTCACCTTCAAAATT
Found at i:74310113 original size:4 final size:4
Alignment explanation
Indices: 74310104--74310166 Score: 67
Period size: 4 Copynumber: 15.5 Consensus size: 4
74310094 GAACATAAGG
*
74310104 AAGA AAGA AAGA AAGA AATGA GAAGA AAGA AAGA AAGA AA-A TAG- AAGAA
1 AAGA AAGA AAGA AAGA AA-GA -AAGA AAGA AAGA AAGA AAGA AAGA AAG-A
*
74310153 AAAA AAGA AAGA AA
1 AAGA AAGA AAGA AA
74310167 ATGTAATTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
3 4 0.08
4 38 0.76
5 6 0.12
6 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (4 bp):
AAGA
Found at i:74310128 original size:22 final size:21
Alignment explanation
Indices: 74310103--74310166 Score: 92
Period size: 22 Copynumber: 2.9 Consensus size: 21
74310093 AGAACATAAG
74310103 GAAGAAAGAAAGAAAGAAATGA
1 GAAGAAAGAAAGAAAGAAAT-A
74310125 GAAGAAAGAAAGAAAGAAAATA
1 GAAGAAAGAAAGAAAG-AAATA
*
74310147 GAAGAAAAAAAAGAAAGAAA
1 GAAG-AAAGAAAGAAAGAAA
74310167 ATGTAATTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
22 24 0.62
23 15 0.38
ACGTcount: A:0.73, C:0.00, G:0.23, T:0.03
Consensus pattern (21 bp):
GAAGAAAGAAAGAAAGAAATA
Found at i:74310151 original size:18 final size:18
Alignment explanation
Indices: 74310107--74310166 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
74310097 CATAAGGAAG
74310107 AAAGAAAGAAAGAAATGA
1 AAAGAAAGAAAGAAATGA
*
74310125 GAAGAAAGAAAGAAA-GA
1 AAAGAAAGAAAGAAATGA
* * *
74310142 AAATAGAAGAAAAAAAAG-
1 AAAGA-AAGAAAGAAATGA
74310160 AAAGAAA
1 AAAGAAA
74310167 ATGTAATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 7 0.20
18 27 0.77
19 1 0.03
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.03
Consensus pattern (18 bp):
AAAGAAAGAAAGAAATGA
Found at i:74320496 original size:22 final size:24
Alignment explanation
Indices: 74320451--74320498 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
74320441 TAATCTTTAA
74320451 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
74320475 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
74320497 TA
1 TA
74320499 GCATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:74321175 original size:16 final size:15
Alignment explanation
Indices: 74321156--74321189 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
74321146 AATTTTATTT
*
74321156 ATTAAATTTTTAATTA
1 ATTAAATTATTAA-TA
74321172 ATTAAATTATTAATA
1 ATTAAATTATTAATA
74321187 ATT
1 ATT
74321190 TCTATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTAAATTATTAATA
Found at i:74327527 original size:48 final size:48
Alignment explanation
Indices: 74327467--74327699 Score: 367
Period size: 48 Copynumber: 4.9 Consensus size: 48
74327457 TGTAATCCAT
* * * * *
74327467 TGTACCTAATTTATATTACAAAGTATGTTCATCATTTTAATGTTGCAA
1 TGTATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTGTAA
74327515 TGTATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTGTAA
1 TGTATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTGTAA
*
74327563 TGTGTCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTGTAA
1 TGTATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTGTAA
* *
74327611 TGTATCTAATTTATATTACAAATTTTGTTCCTCGTTCTAATGTTGTAA
1 TGTATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTGTAA
* * *
74327659 TGTATCTAGTTTATATTACAAAGTTTATTCCTCATTTTAAT
1 TGTATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAAT
74327700 TACAAAGTTT
Statistics
Matches: 171, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 171 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (48 bp):
TGTATCTAATTTATATTACAAAGTTTGTTCCTCGTTTTAATGTTGTAA
Found at i:74330417 original size:55 final size:53
Alignment explanation
Indices: 74330275--74330468 Score: 174
Period size: 55 Copynumber: 3.6 Consensus size: 53
74330265 TTACCATTTT
* *
74330275 CATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAACTCACCATTGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
* * * * ** * *
74330328 CATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCGTAGTTTATCAATGC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G-AACTCACCAATGC
* * * * * * *
74330383 CATGTCTTGACATGGTCTTACTTGATTTCCTTGCCTTATAAAACTTAACAATTC
1 CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-GAACTCACCAATGC
* *
74330437 CATG-CATTGGCATGGTCTTACTTGGTATCCTT
1 CATGTC-TTGACATGGTCTTACATGGTATCCTT
74330469 AAACCCTAAT
Statistics
Matches: 112, Mismatches: 26, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
53 35 0.31
54 37 0.33
55 40 0.36
ACGTcount: A:0.20, C:0.23, G:0.18, T:0.39
Consensus pattern (53 bp):
CATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTCACCAATGC
Found at i:74330468 original size:54 final size:52
Alignment explanation
Indices: 74330260--74330468 Score: 168
Period size: 53 Copynumber: 3.9 Consensus size: 52
74330250 CTTTCCTTTT
* * * * *
74330260 TAAACTTACCATTTTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTA
1 TAAACTTAACAATTCCATG-CTTGGCATGGTCTTACTTGGTATCCTTGCCTTA
* * * * * *
74330313 TGAAC-TCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTA
1 TAAACTTAACAATT-CCATG-CTTGGCATGGTCTTACTTGGTATCCTTGCCTTA
* ** * * * * *
74330366 TCGTAGTTTATCAATGCCATGTCTTGACATGGTCTTACTTGATTTCCTTGCCTTA
1 T--AAACTTAACAATTCCATG-CTTGGCATGGTCTTACTTGGTATCCTTGCCTTA
74330421 TAAAACTTAACAATTCCATGCATTGGCATGGTCTTACTTGGTATCCTT
1 T-AAACTTAACAATTCCATGC-TTGGCATGGTCTTACTTGGTATCCTT
74330469 AAACCCTAAT
Statistics
Matches: 117, Mismatches: 34, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
52 4 0.03
53 39 0.33
54 36 0.31
55 34 0.29
56 4 0.03
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (52 bp):
TAAACTTAACAATTCCATGCTTGGCATGGTCTTACTTGGTATCCTTGCCTTA
Found at i:74331765 original size:23 final size:24
Alignment explanation
Indices: 74331732--74331797 Score: 89
Period size: 23 Copynumber: 2.8 Consensus size: 24
74331722 TTTCCGTTAC
*
74331732 ATGGCTCTTTGTGAGCTTCTTGAT
1 ATGGATCTTTGTGAGCTTCTTGAT
*
74331756 A-GGATCTTTGTAAGCTTCTTGAT
1 ATGGATCTTTGTGAGCTTCTTGAT
* *
74331779 ATGGTTCTTTGTGAACTTC
1 ATGGATCTTTGTGAGCTTC
74331798 CAAATTTTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 21 0.58
24 15 0.42
ACGTcount: A:0.17, C:0.15, G:0.23, T:0.45
Consensus pattern (24 bp):
ATGGATCTTTGTGAGCTTCTTGAT
Found at i:74334800 original size:81 final size:81
Alignment explanation
Indices: 74334670--74334852 Score: 233
Period size: 81 Copynumber: 2.2 Consensus size: 81
74334660 CAATATCTTG
* * * * * **
74334670 CACACTAGGTGCCAATACATAGCCGAAGCTATTATAATCTCGCACACTAAGTGCCTTAAATAGCC
1 CACACTAAGTGCC-ATATATAGCCGAAGATATTACAATCTCACACACTAAGTGCCACAAATAGCC
* **
74334735 GAAGCTATCTTGGTCTCA
65 GAAGCTATC-TCGAATCA
* *
74334753 CACACTAAGTGCCATATATAGCCGAAGATATTCCAAT-TCACACACTAAGTGCCACATATAGCCG
1 CACACTAAGTGCCATATATAGCCGAAGATATTACAATCTCACACACTAAGTGCCACAAATAGCCG
74334817 AAGCTATCTCGAATCA
66 AAGCTATCTCGAATCA
74334833 CACACTAAGTGCCATATATA
1 CACACTAAGTGCCATATATA
74334853 TATCCGAATC
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
80 25 0.28
81 31 0.35
82 20 0.23
83 12 0.14
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (81 bp):
CACACTAAGTGCCATATATAGCCGAAGATATTACAATCTCACACACTAAGTGCCACAAATAGCCG
AAGCTATCTCGAATCA
Found at i:74334805 original size:40 final size:41
Alignment explanation
Indices: 74334670--74334852 Score: 203
Period size: 40 Copynumber: 4.5 Consensus size: 41
74334660 CAATATCTTG
* * * *
74334670 CACACTAGGTGCCAATACATAGCCGAAGCTATTATAATCTCG
1 CACACTAAGTGCC-ATATATAGCCGAAGCTATTCTAATCTCA
* * **
74334712 CACACTAAGTGCCTTAAATAGCCGAAGCTA-TCTTGGTCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATTC-TAATCTCA
* *
74334753 CACACTAAGTGCCATATATAGCCGAAGATATTCCAAT-TCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATTCTAATCTCA
* *
74334793 CACACTAAGTGCCACATATAGCCGAAGCTATCTCGAA--TCA
1 CACACTAAGTGCCATATATAGCCGAAGCTAT-TCTAATCTCA
74334833 CACACTAAGTGCCATATATA
1 CACACTAAGTGCCATATATA
74334853 TATCCGAATC
Statistics
Matches: 121, Mismatches: 17, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
40 55 0.45
41 52 0.43
42 14 0.12
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (41 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATTCTAATCTCA
Found at i:74350283 original size:16 final size:16
Alignment explanation
Indices: 74350262--74350295 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
74350252 TGAATTTTTG
*
74350262 TATTTTTAATATTAAA
1 TATTTTTAAGATTAAA
74350278 TATTTTTAAGATTAAA
1 TATTTTTAAGATTAAA
74350294 TA
1 TA
74350296 AAATTAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TATTTTTAAGATTAAA
Found at i:74351018 original size:34 final size:34
Alignment explanation
Indices: 74350975--74351078 Score: 208
Period size: 34 Copynumber: 3.1 Consensus size: 34
74350965 AACATTCAAC
74350975 TAAATACCATTAAAAGTCCACCTCTACATGCCAT
1 TAAATACCATTAAAAGTCCACCTCTACATGCCAT
74351009 TAAATACCATTAAAAGTCCACCTCTACATGCCAT
1 TAAATACCATTAAAAGTCCACCTCTACATGCCAT
74351043 TAAATACCATTAAAAGTCCACCTCTACATGCCAT
1 TAAATACCATTAAAAGTCCACCTCTACATGCCAT
74351077 TA
1 TA
74351079 TAACCTTGGC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 70 1.00
ACGTcount: A:0.38, C:0.29, G:0.06, T:0.27
Consensus pattern (34 bp):
TAAATACCATTAAAAGTCCACCTCTACATGCCAT
Found at i:74354524 original size:704 final size:700
Alignment explanation
Indices: 74352839--74354916 Score: 2599
Period size: 704 Copynumber: 3.0 Consensus size: 700
74352829 ACTCATCGAG
* * * * *
74352839 TTTGTTGTCCTGAAACCATTGTTCCGATTTCACTGAAAACGGGCTA-TTACAACTCTCCCCCTGA
1 TTTGTGGTCCCGAAACCATTGTTCTGATTTCACTAAAAACGGGC-AGTTACAACTCTCCCCCTAA
*
74352903 AGGAATTTTCGTCCCCGAAAATCTTACTAGAAAACAAATTCAAGTATTGCACTTTCATAGCTTCT
65 AGGAATTTTCGTCCCCGAAAATCTTACTAGAAAATAAATTCAAGTATTGCACTTTCATAGCTTCT
* * * * *
74352968 TCCAGTTCCCAGGAAACCTCTTCTATTCCATGTTGTTGCCAAAGAACTTTAACTAAAGCTATACT
130 TTCGGTTCCCAGGAAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAGCTATACT
* *
74353033 TTTATTTCT-TATTCCTTTAACTTCCTGAGCTAGAATTCTGATCAGTTCTTCACTGTACGTCATA
195 TTTATTTCTCAATT-CTTTAACTTCCTGAGCTAGAATTCTGATCAGTTCTTCACTGTTCGTCATA
* * * * **
74353097 TTAGGTTGAATTTCAACATCAACTTGGGATATTACCTGTAAAGGATCTGATCGATACCGTTATAA
259 TTAGGTTGAATTTCAACATCAAC-TAGGATATTACATGTGAAGGATCTGATCGATAACGTCGTAA
* **
74353162 CAT-TGATACGTGGAATACATTATGAATCTTTTCTAACTCTAACGGCAAAGCTAATTGATAAGCT
323 CATCT-ATGCGT-GAATACATTATGAATCTTTTCTAACTCTAACGG-AAAGCTAACCGATAAGCT
* * * *
74353226 ACTGACCCAATTCTCTCAATGATCTCAAATGACCCGATAAACCACGGACTAAGCTTTCCTTTTCG
385 ACTGGCCCAATTCTCTCAATGATCTAAAATGACCAGATAAACCACGGACTAAGCTTTCCTTTTTG
* * * * *
74353291 GCCAAATCAAAGAACTTTCTCCCAAGGTAATACTTTCAGAAA-ACTGTGTCACCAACTTGAAACT
450 GCCAAATCAAAGAACTTTCTTCCAAGGAAATACTTTCAGAAATATTGTGTCGCCAACTTGAAATT
* * *
74353355 CAATATATTTTGTTTTCAAATCTGCGTAAGATTTCTGTCGATCCAAAGCTGCTTTCAAGCTATCA
515 CAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTGTCGATCCAAAGCTGCTTTTAAGCTATCA
* *
74353420 TGTATCACTTTGACCTTTTCTTCGGTTTCTCAAGTCAAATCAACACCAAATAACTTTTTCTCACT
580 CGTATCACTTTGACCTTTTCTT-GGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCTCACT
* * * *
74353485 CAA-CTCT-GCCAGTATAACAGAATTCCACACTTTTGACCATACAAAGCTTCTTTGGA
644 -AAGCTCTATCCAGTATAACAGAATTCCACACTTTCGACCATACAAAGCTTCGTCGGA
* * * * * *
74353541 TGTGTGGTCCCAAAACCATTGTTTTGATTTCACTAAAAATGGGCTGTTACAACTCTCCCCCAAAA
1 TTTGTGGTCCCGAAACCATTGTTCTGATTTCACTAAAAACGGGCAGTTACAACTCTCCCCCTAAA
* * * * *
74353606 GGAATTTTCATCCTCGAAAATCTTACTAGAAAATAAGTTCAAGTATTGCACATTCATAACTTC-T
66 GGAATTTTCGTCCCCGAAAATCTTACTAGAAAATAAATTCAAGTATTGCACTTTCATAGCTTCTT
* * * *
74353670 TCTGGTTCCCAGGCAGCCTCTTTTATTCCGTGTCATTGCCAAAGAATTTTAAACTAAAGCTATAC
131 TC-GGTTCCCAGGAAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTT-AACTAAAGCTATAC
* *
74353735 TTTTATTTCTCAATTCTTTAACTTCCCT-ATCTAGACA-TCTGATCAGTTCTTCATTGTAT-GTC
194 TTTTATTTCTCAATTCTTTAACTT-CCTGAGCTAGA-ATTCTGATCAGTTCTTCACTGT-TCGTC
* * * *
74353797 ATATCTA-GTTGAATTTCAACATCAAGTAAGGATATTACATGTGAAGGACCTGATCGATATCATC
256 ATAT-TAGGTTGAATTTCAACATCAACT-AGGATATTACATGTGAAGGATCTGATCGATAACGTC
*
74353861 GTAACATCTATGCGTTGAATACATTATAAATCTTTTCTAACTCTAACGGTAAAGCTAACCGATAA
319 GTAACATCTATGCG-TGAATACATTATGAATCTTTTCTAACTCTAACGG-AAAGCTAACCGATAA
* ** **
74353926 GCTACTGGCCCAATTCTCTCAATAATAAAAAATGACTTGATAAACCACGGACTAAGCTTTCCTTT
382 GCTACTGGCCCAATTCTCTCAATGATCTAAAATGACCAGATAAACCACGGACTAAGCTTTCCTTT
* * * *
74353991 TTGGCCACATCAAAAAACTTTCTTCCAAGGCAATACTTTCAGAAATATTGTGTTGCCAACTTGAA
447 TTGGCCAAATCAAAGAACTTTCTTCCAAGGAAATACTTTCAGAAATATTGTGTCGCCAACTTGAA
** * * * * *
74354056 ATTTGATATCTTTTCTTTTCTAATATGTGTAAGATTTTTGTCGATCCAAAGCTACTTTTAAGCTA
512 ATTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTGTCGATCCAAAGCTGCTTTTAAGCTA
* * * ** * *
74354121 TCACGTGTCACTTTGACCTTTTCTCTGGTTTCCCAAATCAAGTCAACACTGATTAACTTTTTCTT
577 TCACGTATCACTTTGACCTTTTCT-TGGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCTC
* * * *
74354186 GCTAAGCTCTATCCAGTTTAA-TGAAATTCGACACTTTCGACCATACAAAGCTTCGTCGGA
641 ACTAAGCTCTATCCAGTATAACAG-AATTCCACACTTTCGACCATACAAAGCTTCGTCGGA
* * * * *
74354246 TTTGTGGTCCCGAAACTACTGTTCTGAATTCACTAAAAACGGGCAGCTACAACTCTCCCTCTAAA
1 TTTGTGGTCCCGAAACCATTGTTCTGATTTCACTAAAAACGGGCAGTTACAACTCTCCCCCTAAA
* * *
74354311 GAAATTTTTGTCCCCAAAAATCTTACTAGAAAATAAATTCAAGTATTGCACTTTCATAGCTTCTT
66 GGAATTTTCGTCCCCGAAAATCTTACTAGAAAATAAATTCAAGTATTGCACTTTCATAGCTTCTT
* * ** * * *
74354376 TCGGTTCCCAAGTAGCCTCTTCTATTTTGTGTCGTGGCTAGAGAACTTTAACTAAAGCTATACTT
131 TCGGTTCCCAGGAAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAGCTATACTT
* *
74354441 TTATGTCTCAATTCTTTAACTTCCTGAGCTAGAATTTTGAT-AGGTTCTTCACTGTTCGTCATAT
196 TTATTTCTCAATTCTTTAACTTCCTGAGCTAGAATTCTGATCA-GTTCTTCACTGTTCGTCATAT
*
74354505 TAGGTTGAATTTCAACATCAACTAGGAATATTACGTGTGAAGGATCTGATCGA-AACTGTCG-AA
260 TAGGTTGAATTTCAACATCAACTAGG-ATATTACATGTGAAGGATCTGATCGATAAC-GTCGTAA
* *
74354568 CCATCGATATGCG-GAATACATTATGTATCTTTTCTAACTCTTACGAGAAAGCTAACCGATAAGC
323 -CATC--TATGCGTGAATACATTATGAATCTTTTCTAACTCTAACG-GAAAGCTAACCGATAAGC
* * * * *
74354632 TAATGGCCTAGTTCTCTCAATGATCTTAAAT-AGCCAGATAAACCACAGACTAAGCTTTCCTTTT
384 TACTGGCCCAATTCTCTCAATGATCTAAAATGA-CCAGATAAACCACGGACTAAGCTTTCCTTTT
* ** * * * * * *
74354696 TGTCCAAATTGAAGAACTTTCTTCTAAGGAAATCCTTTTAGAAATATTATGTCGTCGACTTGAAA
448 TGGCCAAATCAAAGAACTTTCTTCCAAGGAAATACTTTCAGAAATATTGTGTCGCCAACTTGAAA
* * *
74354761 TTCAATATCTTTTCTATTCAAATCTGCGTAAGATTTCTGTCAATCCAAAGCTGCATTTAAGCTAT
513 TTCAATATCTTTTCTTTTCAAATCTGCGTAAGATTTCTGTCGATCCAAAGCTGCTTTTAAGCTAT
*
74354826 CACGTATCACTTTGACCATTTAT-TTGGTTTCTTAAATCAAATCAACACCAAATAACTTTTTCTC
578 CACGTATCACTTTGACC-TTT-TCTTGGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCTC
* * *
74354890 ACTTAGCTCTATCTATTATAACAGAAT
641 ACTAAGCTCTATCCAGTATAACAGAAT
74354917 CGATACTTTT
Statistics
Matches: 1169, Mismatches: 175, Indels: 62
0.83 0.12 0.04
Matches are distributed among these distances:
701 2 0.00
702 150 0.13
703 283 0.24
704 531 0.45
705 193 0.17
706 10 0.01
ACGTcount: A:0.30, C:0.22, G:0.13, T:0.35
Consensus pattern (700 bp):
TTTGTGGTCCCGAAACCATTGTTCTGATTTCACTAAAAACGGGCAGTTACAACTCTCCCCCTAAA
GGAATTTTCGTCCCCGAAAATCTTACTAGAAAATAAATTCAAGTATTGCACTTTCATAGCTTCTT
TCGGTTCCCAGGAAGCCTCTTCTATTCCGTGTCGTTGCCAAAGAACTTTAACTAAAGCTATACTT
TTATTTCTCAATTCTTTAACTTCCTGAGCTAGAATTCTGATCAGTTCTTCACTGTTCGTCATATT
AGGTTGAATTTCAACATCAACTAGGATATTACATGTGAAGGATCTGATCGATAACGTCGTAACAT
CTATGCGTGAATACATTATGAATCTTTTCTAACTCTAACGGAAAGCTAACCGATAAGCTACTGGC
CCAATTCTCTCAATGATCTAAAATGACCAGATAAACCACGGACTAAGCTTTCCTTTTTGGCCAAA
TCAAAGAACTTTCTTCCAAGGAAATACTTTCAGAAATATTGTGTCGCCAACTTGAAATTCAATAT
CTTTTCTTTTCAAATCTGCGTAAGATTTCTGTCGATCCAAAGCTGCTTTTAAGCTATCACGTATC
ACTTTGACCTTTTCTTGGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCTCACTAAGCTCT
ATCCAGTATAACAGAATTCCACACTTTCGACCATACAAAGCTTCGTCGGA
Found at i:74355349 original size:484 final size:484
Alignment explanation
Indices: 74354435--74355395 Score: 1292
Period size: 484 Copynumber: 2.0 Consensus size: 484
74354425 AACTAAAGCT
* *
74354435 ATACTTTTATGTCTCAATTCTTTAACTTCCTGAGCTAGAATTTTGATAGGTTCTTCACTGTTCGT
1 ATACTTTTATGTCTCAATTCTTTAACTTCCTGAGCTAGAATTCTGATAGGTTCTTCACTGTACGT
* * * * * *
74354500 CATATTAGGTTGAATTTCAACATCAACTAGGAATATTACGTGTGAAGGATCTGATCGAAACTGTC
66 CATATAAGGTTGAATTTCAACATCAACTAGGAATATTACCTATAAAGGATCTAATCGAAACAGTC
** * * * * *
74354565 GAACCATCGATATGCGGAATACATTATGTATCTTTTCTAACTCTTACGAGAAAGCTAACCGATAA
131 GAACCATCGATACACGGAATACATTATGAATATCTTCTAACTCTGACGAGAAAGCGAACCGATAA
* * * * *
74354630 GCTAATGGCCTAGTTCTCTCAATGATCTTAAATAGCCAGATAAACCACAGACTAAGCTTTCCTTT
196 GCTAATAGCCCAATTCTCTCAATGATCTCAAACAGCCAGATAAACCACAGACTAAGCTTTCCTTT
* * ** * * * ** *
74354695 TTGTCCAAATTGAAGAACTTTCTTCTAAGGAAATCCTTTTAGAAATATTATGTCGTCGACTTGAA
261 TCGGCCAAATCAAAGAACTTTATTCCAAGGAAATACTTTTAGAAATACCATGTCCTCGACTTGAA
* *
74354760 ATTCAATATCTTTTCTATTCAAATCTGCGTAAGATTTCTGTCAATCCAAAGCTGCATTTAAGCTA
326 ATTCAATATCTTTTCTATTCAAATCTGCGTAAGATTTCTGTCAATCCAAAACTGCATTTAAACTA
* * *
74354825 TCACGTATCACTTTGACCATTTATTTGGTTTCTTAAATCAAATCAACACC-AAATAACTTTTTCT
391 TCACGTATCACTTTGACCATTTATTTAGTTCCTCAAATCAAATCAACACCGAAA-AACTTTTTCT
* *
74354889 CACTTAGCTCTATCTATTATAACAGAATCG
455 CACTCAGCTCTATCTAGTATAACAGAATCG
* *
74354919 ATACTTTTATTTCTCAATTCTTTAACTT-CTCGAGCTAGAATTCTGATTGGTTCTTCACTGTACG
1 ATACTTTTATGTCTCAATTCTTTAACTTCCT-GAGCTAGAATTCTGATAGGTTCTTCACTGTACG
* *
74354983 TCATATAAGGTTGAATTTCAACATCAACT-GGAGATATTACCTATAAAGGATCTAATTGATACAG
65 TCATATAAGGTTGAATTTCAACATCAACTAGGA-ATATTACCTATAAAGGATCTAATCGAAACAG
* * *
74355047 TTGTAA-CATCGATACATGGAATACATTATGAATATCTTCTAACTCTGACG-GCTAAGCGAACCG
129 TCG-AACCATCGATACACGGAATACATTATGAATATCTTCTAACTCTGACGAG-AAAGCGAACCG
* *
74355110 ATAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACAG-CACGATAAACCACGGACTAAGCTTT
192 ATAAGCTAATAGCCCAATTCTCTCAATGATCTCAAACAGCCA-GATAAACCACAGACTAAGCTTT
* *
74355174 CCTTTTCGGCCAAATCAAAGAACTTTATTCCAAGGCAATACTTTTAGAAATACCGTGTCACT-GA
256 CCTTTTCGGCCAAATCAAAGAACTTTATTCCAAGGAAATACTTTTAGAAATACCATGTC-CTCGA
* * * *
74355238 CTTGAAATTTAATATCTTTTCTTTTCAAATCTGCGTAAGATTTTTGTCGATCCAAAACTGC-TTT
320 CTTGAAATTCAATATCTTTTCTATTCAAATCTGCGTAAGATTTCTGTCAATCCAAAACTGCATTT
74355302 CAAACTATCACGTATCACTTTGACCATTT-TTTCAGTTCCTCAAATCAAATCAACACCGAAAAAC
385 -AAACTATCACGTATCACTTTGACCATTTATTT-AGTTCCTCAAATCAAATCAACACCGAAAAAC
* *
74355366 TTTTTCTCGCTCAGCTCTGTCTAGTATAAC
448 TTTTTCTCACTCAGCTCTATCTAGTATAAC
74355396 GAAATCCAAC
Statistics
Matches: 414, Mismatches: 54, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
483 14 0.03
484 394 0.95
485 6 0.01
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.35
Consensus pattern (484 bp):
ATACTTTTATGTCTCAATTCTTTAACTTCCTGAGCTAGAATTCTGATAGGTTCTTCACTGTACGT
CATATAAGGTTGAATTTCAACATCAACTAGGAATATTACCTATAAAGGATCTAATCGAAACAGTC
GAACCATCGATACACGGAATACATTATGAATATCTTCTAACTCTGACGAGAAAGCGAACCGATAA
GCTAATAGCCCAATTCTCTCAATGATCTCAAACAGCCAGATAAACCACAGACTAAGCTTTCCTTT
TCGGCCAAATCAAAGAACTTTATTCCAAGGAAATACTTTTAGAAATACCATGTCCTCGACTTGAA
ATTCAATATCTTTTCTATTCAAATCTGCGTAAGATTTCTGTCAATCCAAAACTGCATTTAAACTA
TCACGTATCACTTTGACCATTTATTTAGTTCCTCAAATCAAATCAACACCGAAAAACTTTTTCTC
ACTCAGCTCTATCTAGTATAACAGAATCG
Found at i:74356754 original size:703 final size:701
Alignment explanation
Indices: 74354919--74358391 Score: 3826
Period size: 702 Copynumber: 4.9 Consensus size: 701
74354909 AACAGAATCG
* **
74354919 ATACTTTTATTTCTCAATTCTTTAACTTCTCGAGCTAGAATTCTGATTGGTTCTTCACTGTACGT
1 ATACTTTTATTTCTCAATTCTTTAACTTCCCGAGCTAGAATTCTGATCAGTTCTTCACTGTACGT
* * * * * * *
74354984 CATATAAGGTTGAATTTCAACATCAACTGGAGATATTACCTATAAAGGATCTAATTGATACAGTT
66 CATATCAGGTTGAATTTCAACATCAATTGGGGATATTACCTGTGAAGGATCTAATCGATACA-TC
** * * * *
74355049 GTAACATCGATACATGGAATACATTATGAATATCTTCTAACTCTGACGGCTAAGCGAACCGATAA
130 GTAACATCGATATGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGATAA
* * **
74355114 GCTACTAGCCCAATTCTCTCAATGATCTCAAACAGCACGATAAACCACGGACTAAGCTTTCCTTT
195 GCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCTCGATAAACCACAAACTAAGCTTTCCTTT
** * * * *
74355179 TCGGCCAAATCAAAGAACTTTATTCCAAGGCAATACTTTTAGAAATACCGTGTCACTGACTTGAA
260 TCAACCAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAA
* * * *
74355244 ATTTAATATCTTTTCTTTTCAAATCTGCGTAAGATTTTTGTCGATCCAAAACTGCTTTCAAACTA
325 ATTCAATATCTTTTCTTTTCAAATCAGCGTAAGATTTTTATCGATCCAAAACTGCTTTCAAGCTA
* * *
74355309 TCACGTATCACTTTGACCATTTTTTCAGTTCCTCAAATCAAATCAACACCGAAAAACTTTTTCTC
390 TCACGTATCACTTTGACC-TTTTTTCAGTTTCTCAAATCAAATCAACACTGAATAACTTTTTCTC
* * * * ** * * *
74355374 GCTCAGCTCTGTCTAGTATAACGAAATCCAACACTTTTAACCATAGAAAACTTCG-TCAGATTTG
454 GCTCAGCTCTATCCAGTATAACGAAATTCGACACTTTCGACCATACAAAGCTTCGTTGA-ATTTG
* * * ** **
74355438 TGGTCAAGAAACCACTATTCTGACTTCACTGAAAATGCATTGTTACAACTCTCCCTTTAAAGGAA
518 TGGTCAGGAAACCATTTTTC-GACTTCACTGAAAATGGGTTGTTACAACTCTCCCCCTAAAGGAA
* ***** * *
74355503 TTTTCATTCCTGTGTATCTTAATAGAAAATAAGTTCAAGTATTGCACTTT-AATAGCTACTTCTG
582 TTTTCATCCCAAAAAATCTTACTAGAAAATAAGTTCAAGTATTGCACTTTCAA-AGCTTCTTCTG
* * * *
74355567 TTTCCCAGAAAGCTTCTTCGATTCCGTGTCATTACCA-ACGAACTTTAACTAAAGC-
646 GTTCCCAGGAAGCCTCTTCGATTCCATGTCATTACCAGA-GAACTTTAACTAAAGCT
* * * * * * * * *
74355622 -GACCTTTATTTATCAAATCTTTAACTTCCCGAGCTAGAATTTTGACCAGTTATTCACTATATGT
1 ATACTTTTATTTCTCAATTCTTTAACTTCCCGAGCTAGAATTCTGATCAGTTCTTCACTGTACGT
* * * *
74355686 CATATCAGGTTGAATTTCAATATCAACTGGGGATATTACCTGTGAAGTATCTGATCGATACTATC
66 CATATCAGGTTGAATTTCAACATCAATTGGGGATATTACCTGTGAAGGATCTAATCGATAC-ATC
* * * **
74355751 ATAACATCGATATGTGGAATACATTATGAATCTTTTCTAACTCTGATGGTAAAGCTAACAAATAA
130 GTAACATCGATATGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGATAA
* ** * * * * * *
74355816 GTTACCGGCCCAAATCTCTCAATCATCTCAAGCGGCCCAATAAACCACAGACTAAGCTTTCCTTT
195 GCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCTCGATAAACCACAAACTAAGCTTTCCTTT
*
74355881 TCGAA-AAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAA-ACTGTGTCGCTGACTTGA
260 TC-AACCAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGA
* * * * * *
74355944 AATTCAACATCTTTTCTTTTCAAATTAGCATAAGATTTTTATTGATCCAAAATTTCTTTCAAGCT
324 AATTCAATATCTTTTCTTTTCAAATCAGCGTAAGATTTTTATCGATCCAAAACTGCTTTCAAGCT
* * *
74356009 ATCACGTATCACTTTAACCTATTCTTC-GATTTTTCAAATCAAATCAACACTGAATAACTTTTTC
389 ATCACGTATCACTTTGACCT-TTTTTCAG-TTTCTCAAATCAAATCAACACTGAATAACTTTTTC
* * * **
74356073 TCGCTTAGCTCTATCCAGTTTAACGAAATTCGACACTTTCGACCATGCAAAGCTTCGTTGGGTTT
452 TCGCTCAGCTCTATCCAGTATAACGAAATTCGACACTTTCGACCATACAAAGCTTCGTTGAATTT
* * * * *
74356138 GTGATCAGGAAACCTTTGTTTCGACTTCACTGAAAATGGGCTATTACAACTCTCCCCTTAAAGGA
517 GTGGTCAGGAAACCATT-TTTCGACTTCACTGAAAATGGGTTGTTACAACTCTCCCCCTAAAGGA
* * *
74356203 ATTTTCATCCCAAAAAATCTTACTAGAAAATAAGTTCAACTATTACACTTTCAAAGCTTCTTCTA
581 ATTTTCATCCCAAAAAATCTTACTAGAAAATAAGTTCAAGTATTGCACTTTCAAAGCTTCTTCTG
* * * * * *
74356268 GTTCCCAGGCAGCTTCTTCTATTCCATGTCATTGCTAGAGAACTTTAGCTAAAGCT
646 GTTCCCAGGAAGCCTCTTCGATTCCATGTCATTACCAGAGAACTTTAACTAAAGCT
* * *
74356324 ATACTTTTATTTCTCAATTCTTTAACTTCCCAAGCTAGAATTGTGATAAGTTCTTCACTGTACGT
1 ATACTTTTATTTCTCAATTCTTTAACTTCCCGAGCTAGAATTCTGATCAGTTCTTCACTGTACGT
* * * *
74356389 CATATTAGGTTGCATTTCAACATCAATTGGGGATATTACATGTGAAGGATCTAATCAATATCATC
66 CATATCAGGTTGAATTTCAACATCAATTGGGGATATTACCTGTGAAGGATCTAATCGATA-CATC
*** * * *
74356454 GTAACATCGATA-CACGATATACATTATGAATCTTTCCT-ACGTCTTACGCCAAAGCTAACCGAT
130 GTAACATCGATATGTGGA-ATACATTATGAATCTTTTCTAAC-TCTGACGGCAAAGCTAACCGAT
* * * * * *
74356517 AAGCTATTAGCCCAATTCTCTTAATAATTTCAAACAGCTCGATAAACCACAAACTAAGTTTTCCT
193 AAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCTCGATAAACCACAAACTAAGCTTTCCT
* * *
74356582 TTTCAATCAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCCGACTTC
258 TTTCAACCAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTG
* * * *
74356647 AAATCCAATATATTTTCTTTTTAAATCAGGGTAAGATTTTTATCGATCCAAAACTGCTTTCAAGC
323 AAATTCAATATCTTTTCTTTTCAAATCAGCGTAAGATTTTTATCGATCCAAAACTGCTTTCAAGC
* **
74356712 TATCACGTATCACTTT-ATCCTTTTTTCAGCTTCTTGAATCAAATCAACACTGAATAACTTTTTC
388 TATCACGTATCACTTTGA-CCTTTTTTCAGTTTCTCAAATCAAATCAACACTGAATAACTTTTTC
* * * * * * *
74356776 TCGCTCAACTCTGTCCAATATAAC-AGAATTCAAAACTTTTGACCATACAAAGCTT-TTTCGAAT
452 TCGCTCAGCTCTATCCAGTATAACGA-AATTCGACACTTTCGACCATACAAAGCTTCGTT-GAAT
*** * * * * **
74356839 TTGTGGTCTCAAAACCACTATCTCGATTTCACAGAAAACAGGTTGTTACAACTCTCCCCCTAAAG
515 TTGTGGTCAGGAAACCA-TTTTTCGACTTCACTGAAAATGGGTTGTTACAACTCTCCCCCTAAAG
* * * *
74356904 GAATTTTCGTCCCCAAAAATCTTACCAGAAAATAAGGTCAAGTATTGCACTTTCATAA-CTTCTT
579 GAATTTTCATCCCAAAAAATCTTACTAGAAAATAAGTTCAAGTATTGCACTTTCA-AAGCTTCTT
* * ** *
74356968 CTGGTTCCCAAGAAGCCTCTTCTATTCTGTGTCATTTCCAGAGAACTTTAACTAAAGCT
643 CTGGTTCCCAGGAAGCCTCTTCGATTCCATGTCATTACCAGAGAACTTTAACTAAAGCT
* * * *
74357027 ATACTTTTATTTCTCAATTCTTTAACTTTCCGAGCTAGAATTCTGATCGGTTCTTCACTATACAT
1 ATACTTTTATTTCTCAATTCTTTAACTTCCCGAGCTAGAATTCTGATCAGTTCTTCACTGTACGT
* * *** *
74357092 CATATCAGGTTGAATGTCAACATCAAATT-GGGATATTACCTGCT-TAGGATCCGGTTGATACCA
66 CATATCAGGTTGAATTTCAACATC-AATTGGGGATATTACCTG-TGAAGGATCTAATCGATA-CA
* * * *
74357155 TCATAACATCGATATGTTGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGTTAATCGAT
128 TCGTAACATCGATATGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGAT
* * ** *
74357220 AAACTACTAGCTCAATTCTCTCAATGATCTCAAACGGCTTAATAAACCACATACTAAGCTTTCCT
193 AAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCTCGATAAACCACAAACTAAGCTTTCCT
* * * * * *
74357285 TTT-AGACCAAATCAAAGAACTTCCTTCCAAGGCAATGCTTTCAAAAATACTATGTC-ATCACTT
258 TTTCA-ACCAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTT
* * * * **
74357348 GAAATTCAATATC-TTTCTTTTCAAATCTA-CGTAAGATTTCTGTCAATCCAAAGCTTTTTTCAA
322 GAAATTCAATATCTTTTCTTTTCAAATC-AGCGTAAGATTTTTATCGATCCAAAACTGCTTTCAA
* *
74357411 GCTATCACGTATCACTTTGACCATTTATTC-GATTTCTAAAATCAAATCAACACCT-AATAACTT
386 GCTATCACGTATCACTTTGACC-TTTTTTCAG-TTTCTCAAATCAAATCAACA-CTGAATAACTT
* * * * *
74357474 TTTCTCGCTCAGCTCTATCCACTATAACAAAATTTGACACTTTCGACCCTACAAAGCTTCATTGA
448 TTTCTCGCTCAGCTCTATCCAGTATAACGAAATTCGACACTTTCGACCATACAAAGCTTCGTTGA
** ** * *
74357539 ATTTGTGGTCCTGAAACCATTACTCTGACTTCACT-ACAAATGGGTTGTTACGACTCTGCCCCTA
513 ATTTGTGGTCAGGAAACCATTTTTC-GACTTCACTGA-AAATGGGTTGTTACAACTCTCCCCCTA
*** ** * * * *
74357603 AAGGAATTTTCATCCTTGAGCATCTTACCAGAAAATAAATTCAAGTATTGCACTTTCATAGCTTT
576 AAGGAATTTTCATCCCAAAAAATCTTACTAGAAAATAAGTTCAAGTATTGCACTTTCAAAGCTTC
** * * *
74357668 TTCTGGTTCTTAGGCAGCCTCATCGATTCCATGTCATTACCAGAGAACTTTAACTAAAGTT
641 TTCTGGTTCCCAGGAAGCCTCTTCGATTCCATGTCATTACCAGAGAACTTTAACTAAAGCT
* * * *
74357729 ATACCTTTATTTCTCAAATCTTTAACTTCCCGAGCTAGAATTTTGATCAG-TCATTCACTGTATG
1 ATACTTTTATTTCTCAATTCTTTAACTTCCCGAGCTAGAATTCTGATCAGTTC-TTCACTGTACG
* * *
74357793 TCATATCAGGTTGAATTCCAACATCAACTT-GGGATATTACTTGTGAAGGATATAA-CTGATACT
65 TCATATCAGGTTGAATTTCAACATCAA-TTGGGGATATTACCTGTGAAGGATCTAATC-GATAC-
* * *
74357856 GTCGTAACATCGATATGTGGAATACATTATGAATCTTTTCTAACAT-TGACGACAAAGCTAACCA
127 ATCGTAACATCGATATGTGGAATACATTATGAATCTTTTCTAAC-TCTGACGGCAAAGCTAACCG
* * * *
74357920 ATAAGTTATTGGCCCAATTCTCTCAATGATCTCAAACGGC-CTGATAAACCACGGAAA--AGGCT
191 ATAAGCTACTAGCCCAATTCTCTCAATGATCTCAAACGGCTC-GATAAACCAC--AAACTAAGCT
* * * * *
74357982 TTCCTTTTCGACCAAATCAAAGAAATTTCTTCCAAGGCAATACTTTCAGAAATAATATGTCGTTG
253 TTCCTTTTCAACCAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTG
* *
74358047 ACTTGAAATTCAATATCTTTTCTTTTCAAATCAGCGTAAGATTTTTATTGATCCAAAACTGCTTC
318 ACTTGAAATTCAATATCTTTTCTTTTCAAATCAGCGTAAGATTTTTATCGATCCAAAACTGCTTT
* *
74358112 CAAGCTATCATGTATCACTTTGA-CTTTTTCTTAGGTTTCTCAAATCAAATCAACACCT-AATAA
383 CAAGCTATCACGTATCACTTTGACCTTTTT-TCA-GTTTCTCAAATCAAATCAACA-CTGAATAA
* * * *
74358175 CTTTTTCTCACTCAGTTCTATCCATTATAATGAAATTCGACACTTTCGACACTTTCGACCCTACA
445 CTTTTTCTCGCTCAGCTCTATCCAGTATAACGAAATTCGACACTTTCG--AC---C-A---TACA
* * * * * * * *
74358240 AAGCTTCGTCGAATTTATGGTTAGGAAACCATTGTTCCGTCTACACTGAAAATGGGCTATTACAA
501 AAGCTTCGTTGAATTTGTGGTCAGGAAACCATT-TTTCGACTTCACTGAAAATGGGTTGTTACAA
* * * *
74358305 TTCTCCCCCCAAAAGGAATTTTTATCCCAAAAAATCTTACTAGAAAATAAGTT-AACTATTGCAC
565 CTCT-CCCCCTAAAGGAATTTTCATCCCAAAAAATCTTACTAGAAAATAAGTTCAAGTATTGCAC
* *
74358369 TTTCATAGCTTCTTGTGGTTCCC
629 TTTCAAAGCTTCTTCTGGTTCCC
74358392 TGTAACACCC
Statistics
Matches: 2304, Mismatches: 402, Indels: 118
0.82 0.14 0.04
Matches are distributed among these distances:
700 2 0.00
701 394 0.17
702 779 0.34
703 769 0.33
704 233 0.10
705 1 0.00
706 2 0.00
709 1 0.00
713 83 0.04
714 40 0.02
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.34
Consensus pattern (701 bp):
ATACTTTTATTTCTCAATTCTTTAACTTCCCGAGCTAGAATTCTGATCAGTTCTTCACTGTACGT
CATATCAGGTTGAATTTCAACATCAATTGGGGATATTACCTGTGAAGGATCTAATCGATACATCG
TAACATCGATATGTGGAATACATTATGAATCTTTTCTAACTCTGACGGCAAAGCTAACCGATAAG
CTACTAGCCCAATTCTCTCAATGATCTCAAACGGCTCGATAAACCACAAACTAAGCTTTCCTTTT
CAACCAAATCAAAGAACTTTCTTCCAAGGCAATACTTTCAGAAATACTGTGTCGCTGACTTGAAA
TTCAATATCTTTTCTTTTCAAATCAGCGTAAGATTTTTATCGATCCAAAACTGCTTTCAAGCTAT
CACGTATCACTTTGACCTTTTTTCAGTTTCTCAAATCAAATCAACACTGAATAACTTTTTCTCGC
TCAGCTCTATCCAGTATAACGAAATTCGACACTTTCGACCATACAAAGCTTCGTTGAATTTGTGG
TCAGGAAACCATTTTTCGACTTCACTGAAAATGGGTTGTTACAACTCTCCCCCTAAAGGAATTTT
CATCCCAAAAAATCTTACTAGAAAATAAGTTCAAGTATTGCACTTTCAAAGCTTCTTCTGGTTCC
CAGGAAGCCTCTTCGATTCCATGTCATTACCAGAGAACTTTAACTAAAGCT
Found at i:74364678 original size:42 final size:42
Alignment explanation
Indices: 74364619--74364702 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
74364609 AAATTCATCG
74364619 TGACTTTGTCCCATTTCCACTCAGCTATCATGATCGGCTGAA
1 TGACTTTGTCCCATTTCCACTCAGCTATCATGATCGGCTGAA
74364661 TGACTTTGTCCCATTTCCACTCAGCTATCATGATCGGCTGAA
1 TGACTTTGTCCCATTTCCACTCAGCTATCATGATCGGCTGAA
74364703 GCAACCCAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (42 bp):
TGACTTTGTCCCATTTCCACTCAGCTATCATGATCGGCTGAA
Found at i:74378041 original size:24 final size:24
Alignment explanation
Indices: 74377821--74378039 Score: 393
Period size: 24 Copynumber: 9.1 Consensus size: 24
74377811 GCAAAGACCA
*
74377821 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
74377845 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
74377869 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
74377893 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
74377917 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74377941 TATGGCACTATGTGTGCTATTTAC
1 TATGGCACTATGTGTGCGATTTAC
74377965 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
74377989 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
74378013 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
74378037 TAT
1 TAT
74378040 AGTCACATTC
Statistics
Matches: 190, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 190 1.00
ACGTcount: A:0.21, C:0.17, G:0.25, T:0.38
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:74385580 original size:40 final size:40
Alignment explanation
Indices: 74385525--74385734 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
74385515 AACATTGGAA
74385525 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74385565 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
74385605 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
74385645 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * * * *
74385684 ACCAAATCCGGGTTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
74385725 CTATATCCGG
1 ATATATCCGG
74385735 TTAAATCCCG
Statistics
Matches: 151, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
39 2 0.01
40 149 0.99
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:74389441 original size:41 final size:43
Alignment explanation
Indices: 74389392--74389499 Score: 112
Period size: 45 Copynumber: 2.5 Consensus size: 43
74389382 TCTCAGATAG
* ** *
74389392 GGTCTTACACGAAT-CAAATA-CGATGTCAATGTCCTAGACAT
1 GGTCTTACACGAATACAAATATCGATGCCAACATCCCAGACAT
* *
74389433 GGTCTTACACGTAATAACATATATCGATGCCAACATCCCAGACGT
1 GGTCTTACACG-AAT-ACAAATATCGATGCCAACATCCCAGACAT
* *
74389478 GGTCTTACACGAAAACACATAT
1 GGTCTTACACGAATACAAATAT
74389500 TGGAATCCTG
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
41 11 0.20
42 3 0.05
43 7 0.13
44 7 0.13
45 27 0.49
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGAATACAAATATCGATGCCAACATCCCAGACAT
Found at i:74392044 original size:693 final size:693
Alignment explanation
Indices: 74390709--74392595 Score: 2106
Period size: 693 Copynumber: 2.7 Consensus size: 693
74390699 GGATGTTACA
*
74390709 ATCACGTATCACTTTGACCTTTTCTTCAGTTTCTCAAATCAAATCAACACGAAATAACTTTTTCT
1 ATCACGTATCACTTTGACCTTTTCTTCAGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCT
* * * * * * *
74390774 TGCTCAGCTATTTCCATTTTAATGGAATTTGACACTTTCAACCCTACAAAGCTTTGTCGAATTTT
66 TGCTCAGCTCTTTCCATTATAATGGAATTCGACACTTTCGACCCTACAAAGCTTCGTCGGATTTG
* ** *
74390839 TGGTCCTAAAACCACTGCTCTGATTTCACTATAAACGGGCTGTTACAACTCTCCCCCTAAAGGAA
131 TGGTCC-GAAACCACTGCTCCAATTTCACTACAAAC-GGCTGTTACAACTCTCCCCCT-AAGGAA
*
74390904 TTTTCGTCCCTCAATATCTTACTAGAAAATAAGTTCAAGT-TCTGCACTTTCATAGCTTCTTCTG
193 -TTTCGTCCC-CAATATCTTACCAGAAAATAAGTTCAAGTAT-TGCACTTTCATAGCTTCTTCTG
* * *
74390968 GTTCCCAGGCAGCCTCTTTAATTTCATGTTGTTACCAAAGAACTTTAACTAAAGCTATACCTTTA
255 GTTCCCAGGCAACCTCTTTAATTCCGTGTTGTTACCAAAGAACTTTAACTAAAGCTATACCTTTA
* * * ** *
74391033 TTTCTCAAATCTTTCACTTCCTGAGCTAGAATTTTGATCGGTTCTTCACTGTTTATCATATTAGG
320 TTTCTCAAATCTTTAACTT-CT--GCAAGAA--TTGATCAGTTCTTCACTGTACATCATATCAGG
* ** ** *
74391098 TTGAATTCCAACATCAACAGGGGATATTACATGTGAAGGATCTAATTGATACCGCGTAACATCGG
380 TTGAATTCCAACATCAACAGGGGATATTACATATGAAAAATCTAACCGATACCGCGTAACATCGA
* * * * * ** *
74391163 TATGTGGAATACATTATGAATCTTTTCTAACTCTGATGGCAAAGCTAACCAATAAGCTACTGGCC
445 TACGTGGAATACATTATAAATCGTTTCTAACTCTAATAGCAAAGCTAACCAATAAAATACTAGCC
* **
74391228 CAATTCTCTCAATGATCTCAAATGGCTTGATAAACCACAAACTAAGCTTTCCTTTTCGACCAAAT
510 CAATTCTCCCAATGATCTCAAATGGCCAGATAAACCACAAACTAAGCTTTCCTTTTCGACCAAAT
* * *
74391293 CAAAGAACTTTCTTCCAAGGCAACACTTTCAAAAATACTGTGTCGCTTACTTGAAATTCAATATC
575 CAAAGAACTTTCTTCCAAGGCAACACTTTCAAAAATACTATGACGCTCACTTGAAATTCAATATC
* * * * *
74391358 TTTTCTTTTCAGAT-TAGCGTAAGATTTTTATCGATCCAAAA-CTGCTGTCAAGTT
640 TTTTCTTTTCAAATCT-GCGTAAGATTTATATCAAT-CAAAAGCTACTGTCAAGCT
*
74391412 ATCACGTATCAGTTTGACCTTTTCTTCAGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCT
1 ATCACGTATCACTTTGACCTTTTCTTCAGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCT
* * * * *
74391477 TGCTCAACTCTGTCCAATATAATGGACTTCGACACTTTCGACCATACAAAGCTTCGTCGGATTTG
66 TGCTCAGCTCTTTCCATTATAATGGAATTCGACACTTTCGACCCTACAAAGCTTCGTCGGATTTG
* * **
74391542 TGGTCTCGAAACCACT-ATCCCAATTTCACTGA-AAATGGCAATTACAACTCTCCCCCTATAGGA
131 TGGTC-CGAAACCACTGCT-CCAATTTCACT-ACAAACGGCTGTTACAACTCTCCCCCTA-AGGA
* * * * * *
74391605 ATATTCGTCCCCAAAAATCTTACCAGAAAATAAGCTCAAGTATTGCAATTTCATATCTTTTTTTG
192 AT-TTCGTCCCC-AATATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCATAGCTTCTTCTG
* * * * * *
74391670 GTTCCCATGCATCTTCTTTTATTCCGTGTTGTTGCCAAAGAACTTTAACTAAAGCTATACTTTTA
255 GTTCCCAGGCAACCTCTTTAATTCCGTGTTGTTACCAAAGAACTTTAACTAAAGCTATACCTTTA
* *
74391735 TTTCTCAATTCTTTAACTTCT-CAAG-A-T-AT-AGTTCTGAT-ACTGTACGTCATATCAGGTTG
320 TTTCTCAAATCTTTAACTTCTGCAAGAATTGATCAGTTCT--TCACTGTACATCATATCAGGTTG
* * * * *
74391794 AATGT-CTACATCAACTGGGGATATTACCTAT-ACAAAATCTAACCGATACTGACTTAACATCGA
383 AAT-TCCAACATCAACAGGGGATATTACATATGA-AAAATCTAACCGATACCG-CGTAACATCGA
*
74391857 TACGTTGAATACATTATAAATCGTTTCTAACTCTAATAG-AAAGCTAACCAATAAAATACTAGCC
445 TACGTGGAATACATTATAAATCGTTTCTAACTCTAATAGCAAAGCTAACCAATAAAATACTAGCC
* * * *
74391921 TAGTTCTCCCAATGATCTCAAATGGCCAGATAAACCATAAACTAAGCTTTCCATTTT-GACCGAA
510 CAATTCTCCCAATGATCTCAAATGGCCAGATAAACCACAAACTAAGCTTTCC-TTTTCGACCAAA
* *
74391985 TCAAAGAATTTTCTTCCAAGGCAATACTTTCAAAAAATACTATGACGC-CACTTGAAATTCAATA
574 TCAAAGAACTTTCTTCCAAGGCAACACTTTC-AAAAATACTATGACGCTCACTTGAAATTCAATA
* * *
74392049 TCTTTTCTTTTCAAATCTGTGTAAGATTTATGTCAATCAAAAGCTACTTTCAAGCT
638 TCTTTTCTTTTCAAATCTGCGTAAGATTTATATCAATCAAAAGCTACTGTCAAGCT
* * * *
74392105 ATCACATATCACTTTGAACTTCTCTTCGGTTTCTCAAATCAAATCAACA-CAGGAA-AACTTTTT
1 ATCACGTATCACTTTGACCTTTTCTTCAGTTTCTCAAATCAAATCAACACCA--AATAACTTTTT
* * ** * *
74392168 CTCGCTCAGCTCTTTCTATTAT-ATCAAAATTCGACACTTTTGACCCTACAAAGCTTCGTCAGAT
64 CTTGCTCAGCTCTTTCCATTATAAT-GGAATTCGACACTTTCGACCCTACAAAGCTTCGTCGGAT
* **
74392232 TTGTGGTCCCGAAACCACTGCTCCAACTTCACTACAAACGCGCTGTTACAAAACTCCCCCTAAGG
128 TTGTGGT-CCGAAACCACTGCTCCAATTTCACTACAAACG-GCTGTTACAACTCTCCCCCTAA-G
* * *
74392297 GAAGTTTCGTCCCTGAGTATCTTACCAAAAAATAAGTTCAAGTATTGCACTTTCATAGCTTCTTC
190 GAA-TTTCGTCCC-CAATATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCATAGCTTCTTC
*** * * *
74392362 TGGTTCCCAGGCAACCTCTCCGATTCTGTGTTATTACCAAAGACCTTTAACTAAAGCTATACCTT
253 TGGTTCCCAGGCAACCTCTTTAATTCCGTGTTGTTACCAAAGAACTTTAACTAAAGCTATACCTT
* * * * ** *
74392427 GATTTCTCAAATATTTAACTTCCTGAGATATAATTTTGAT-ATGTTCTTCACTGTATGTCGTATC
318 TATTTCTCAAATCTTTAACTT-CTG-CA-AGAA--TTGATCA-GTTCTTCACTGTACATCATATC
* * * * * * * * *
74392491 AGGTTGAATTCCAACATCAACTGGGGATATTACCTGTGAAAGATCTGATCTATACCATCATAGA-
377 AGGTTGAATTCCAACATCAACAGGGGATATTACATATGAAAAATCTAACCGATACC-GCGTA-AC
* * *
74392555 ATCGATATGTGGAATACATTATGAATCTTTTCTAACTCTAA
440 ATCGATACGTGGAATACATTATAAATCGTTTCTAACTCTAA
74392596 CGGCAAATCT
Statistics
Matches: 996, Mismatches: 147, Indels: 82
0.81 0.12 0.07
Matches are distributed among these distances:
692 16 0.02
693 349 0.35
694 211 0.21
695 3 0.00
697 2 0.00
698 4 0.00
699 1 0.00
701 5 0.01
702 153 0.15
703 243 0.24
704 9 0.01
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.34
Consensus pattern (693 bp):
ATCACGTATCACTTTGACCTTTTCTTCAGTTTCTCAAATCAAATCAACACCAAATAACTTTTTCT
TGCTCAGCTCTTTCCATTATAATGGAATTCGACACTTTCGACCCTACAAAGCTTCGTCGGATTTG
TGGTCCGAAACCACTGCTCCAATTTCACTACAAACGGCTGTTACAACTCTCCCCCTAAGGAATTT
CGTCCCCAATATCTTACCAGAAAATAAGTTCAAGTATTGCACTTTCATAGCTTCTTCTGGTTCCC
AGGCAACCTCTTTAATTCCGTGTTGTTACCAAAGAACTTTAACTAAAGCTATACCTTTATTTCTC
AAATCTTTAACTTCTGCAAGAATTGATCAGTTCTTCACTGTACATCATATCAGGTTGAATTCCAA
CATCAACAGGGGATATTACATATGAAAAATCTAACCGATACCGCGTAACATCGATACGTGGAATA
CATTATAAATCGTTTCTAACTCTAATAGCAAAGCTAACCAATAAAATACTAGCCCAATTCTCCCA
ATGATCTCAAATGGCCAGATAAACCACAAACTAAGCTTTCCTTTTCGACCAAATCAAAGAACTTT
CTTCCAAGGCAACACTTTCAAAAATACTATGACGCTCACTTGAAATTCAATATCTTTTCTTTTCA
AATCTGCGTAAGATTTATATCAATCAAAAGCTACTGTCAAGCT
Found at i:74396867 original size:40 final size:40
Alignment explanation
Indices: 74396811--74397054 Score: 339
Period size: 40 Copynumber: 6.1 Consensus size: 40
74396801 TGGGATTTAA
* * *
74396811 CCGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
74396851 CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74396891 CCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74396931 CCGGATATAGTAACTCGTACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
74396971 CCGGATATTGTAACTCACACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
74397011 CCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
74397051 CCGG
1 CCGG
74397055 TTATCATCCG
Statistics
Matches: 185, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 183 0.99
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:74416938 original size:24 final size:24
Alignment explanation
Indices: 74416911--74416987 Score: 95
Period size: 24 Copynumber: 3.2 Consensus size: 24
74416901 TAAGCCAATT
74416911 CACATAGCTATAAACAAAACCAAA
1 CACATAGCTATAAACAAAACCAAA
* ** *
74416935 CACATATC-ATTTAC-AAACCAATT
1 CACATAGCTATAAACAAAACCAA-A
74416958 CACATAGCTATAAACAAAACCAAA
1 CACATAGCTATAAACAAAACCAAA
74416982 CACATA
1 CACATA
74416988 TCATTTACAA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 7 0.17
23 11 0.26
24 17 0.40
25 7 0.17
ACGTcount: A:0.53, C:0.26, G:0.03, T:0.18
Consensus pattern (24 bp):
CACATAGCTATAAACAAAACCAAA
Found at i:74416957 original size:47 final size:47
Alignment explanation
Indices: 74416905--74417006 Score: 195
Period size: 47 Copynumber: 2.2 Consensus size: 47
74416895 AAAAAATAAG
74416905 CCAATTCACATAGCTATAAACAAAACCAAACACATATCATTTACAAA
1 CCAATTCACATAGCTATAAACAAAACCAAACACATATCATTTACAAA
*
74416952 CCAATTCACATAGCTATAAACAAAACCAAACACATATCATTTACAAG
1 CCAATTCACATAGCTATAAACAAAACCAAACACATATCATTTACAAA
74416999 CCAATTCA
1 CCAATTCA
74417007 AATGGCTAAA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.49, C:0.26, G:0.03, T:0.22
Consensus pattern (47 bp):
CCAATTCACATAGCTATAAACAAAACCAAACACATATCATTTACAAA
Found at i:74426971 original size:6 final size:6
Alignment explanation
Indices: 74426953--74427002 Score: 64
Period size: 6 Copynumber: 8.2 Consensus size: 6
74426943 TAGACTTAAT
* * *
74426953 TTCAGA CTCAGA TTTAGA TATCAGA TTTAGA TTCAGA TTCAGA TTCAGA
1 TTCAGA TTCAGA TTCAGA T-TCAGA TTCAGA TTCAGA TTCAGA TTCAGA
74427002 T
1 T
74427003 AGCAGATATG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
6 32 0.86
7 5 0.14
ACGTcount: A:0.34, C:0.14, G:0.16, T:0.36
Consensus pattern (6 bp):
TTCAGA
Found at i:74426995 original size:31 final size:31
Alignment explanation
Indices: 74426937--74427009 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
74426927 CAATTAGAAA
*
74426937 TAGATAT-AGACTTAATTTCAGACTCAGATT
1 TAGATATCAGATTTAATTTCAGACTCAGATT
*
74426967 TAGATATCAGATTTAGA-TTCAGATTCAGATT
1 TAGATATCAGATTTA-ATTTCAGACTCAGATT
* *
74426998 CAGATAGCAGAT
1 TAGATATCAGAT
74427010 ATGCCAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 7 0.19
31 29 0.78
32 1 0.03
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (31 bp):
TAGATATCAGATTTAATTTCAGACTCAGATT
Found at i:74427508 original size:33 final size:33
Alignment explanation
Indices: 74427471--74427546 Score: 116
Period size: 33 Copynumber: 2.3 Consensus size: 33
74427461 TGCTCATGTA
*
74427471 GGCCCACACGCCCATATTTGGCCTTGCCCGTGT
1 GGCCCACACGCCCATATTTGGCCTTGCCCGTAT
* *
74427504 GGCCCACACACCTATATTTGGCCTTGCCCGTAT
1 GGCCCACACGCCCATATTTGGCCTTGCCCGTAT
*
74427537 GACCCACACG
1 GGCCCACACG
74427547 GCCTAGCCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.17, C:0.39, G:0.21, T:0.22
Consensus pattern (33 bp):
GGCCCACACGCCCATATTTGGCCTTGCCCGTAT
Found at i:74429149 original size:15 final size:15
Alignment explanation
Indices: 74429129--74429158 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
74429119 TTAAAAGCCC
*
74429129 ATTCAAGGACATATT
1 ATTCAAGAACATATT
74429144 ATTCAAGAACATATT
1 ATTCAAGAACATATT
74429159 TAGATGGCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (15 bp):
ATTCAAGAACATATT
Found at i:74440617 original size:14 final size:16
Alignment explanation
Indices: 74440593--74440624 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
74440583 TCGGCTGTGG
74440593 ATTTGGGTTTTAA-AA
1 ATTTGGGTTTTAAGAA
74440608 ATTT-GGTTTTAAGAA
1 ATTTGGGTTTTAAGAA
74440623 AT
1 AT
74440625 GTTCTTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.34, C:0.00, G:0.19, T:0.47
Consensus pattern (16 bp):
ATTTGGGTTTTAAGAA
Found at i:74452604 original size:16 final size:17
Alignment explanation
Indices: 74452583--74452626 Score: 65
Period size: 16 Copynumber: 2.7 Consensus size: 17
74452573 TATATATATT
74452583 TTATATTATTAATT-GA
1 TTATATTATTAATTAGA
*
74452599 TTATATTA-TAATTATA
1 TTATATTATTAATTAGA
74452615 TTATATTATTAA
1 TTATATTATTAA
74452627 ACAAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 5 0.20
16 17 0.68
17 3 0.12
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
TTATATTATTAATTAGA
Found at i:74452754 original size:2 final size:2
Alignment explanation
Indices: 74452737--74452778 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
74452727 GAATTACTAT
74452737 TA TA T- TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74452777 TA
1 TA
74452779 AGTAAAGTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74453936 original size:51 final size:53
Alignment explanation
Indices: 74453881--74453996 Score: 137
Period size: 51 Copynumber: 2.2 Consensus size: 53
74453871 AATTGTCGCT
*** *
74453881 TTACTGTTACTATTCTGGATTCGTTCCGAAGAGGTACTCTA-TACC-TTACTG
1 TTACTGTTACTATTCCAAATTCGTTCCGAAGAGGTACTCTAGTACCGCTACTG
* * *
74453932 TTACTGTTACTGTTCCAAATTTGTTCCGATGAGGTACTCTATGTACCGCTACTG
1 TTACTGTTACTATTCCAAATTCGTTCCGAAGAGGTACTCTA-GTACCGCTACTG
*
74453986 TTACTATTACT
1 TTACTGTTACT
74453997 GTTACTGTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
51 35 0.65
53 4 0.07
54 15 0.28
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (53 bp):
TTACTGTTACTATTCCAAATTCGTTCCGAAGAGGTACTCTAGTACCGCTACTG
Found at i:74454138 original size:18 final size:18
Alignment explanation
Indices: 74454115--74454158 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
74454105 TAAATAAAGA
74454115 TACTGAATAATTGACTGC
1 TACTGAATAATTGACTGC
* *
74454133 TACTGAATATTTGACTGT
1 TACTGAATAATTGACTGC
74454151 TACTGAAT
1 TACTGAAT
74454159 TACTGATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (18 bp):
TACTGAATAATTGACTGC
Found at i:74464327 original size:16 final size:16
Alignment explanation
Indices: 74464306--74464337 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
74464296 ACACAAAAGG
74464306 CATGATTATTTCAACT
1 CATGATTATTTCAACT
74464322 CATGATTATTTCAACT
1 CATGATTATTTCAACT
74464338 ATCGTAACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.44
Consensus pattern (16 bp):
CATGATTATTTCAACT
Found at i:74464983 original size:55 final size:55
Alignment explanation
Indices: 74464880--74465008 Score: 141
Period size: 55 Copynumber: 2.3 Consensus size: 55
74464870 GGCCCATGCA
* *
74464880 TGTGTTAATTTAACAGGTTCGACCACGGGTGCTAGACAAGGGCATGTCGAACGCC
1 TGTGTTAATTTGACAGGTTCGACCACGGGTGCAAGACAAGGGCATGTCGAACGCC
* * * * * ** *
74464935 TGTGTTAATTTGACAGGTTCGGCCACGGTTTCAAGGCACGGGTGTGTCGCACGCC
1 TGTGTTAATTTGACAGGTTCGACCACGGGTGCAAGACAAGGGCATGTCGAACGCC
* * *
74464990 CGTGTTATTTTGGCAGGTT
1 TGTGTTAATTTGACAGGTT
74465009 AGCCCATGGC
Statistics
Matches: 61, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 61 1.00
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.29
Consensus pattern (55 bp):
TGTGTTAATTTGACAGGTTCGACCACGGGTGCAAGACAAGGGCATGTCGAACGCC
Found at i:74467976 original size:13 final size:13
Alignment explanation
Indices: 74467958--74467985 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
74467948 GCTCGACAGG
74467958 GACACGCCCGTGT
1 GACACGCCCGTGT
74467971 GACACGCCCGTGT
1 GACACGCCCGTGT
74467984 GA
1 GA
74467986 GTCGTGCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.36, G:0.32, T:0.14
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:74473910 original size:40 final size:39
Alignment explanation
Indices: 74473855--74474057 Score: 248
Period size: 40 Copynumber: 5.1 Consensus size: 39
74473845 TGAATGATAC
* * *
74473855 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTG-TTATAT
*
74473895 CCGGGTTAAGACCCGAAGGCATTTGTG-TGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCT-AG-TGTTATAT
*
74473935 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAG-TGTTATAT
* * *
74473975 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-TGTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGT-TATAT
* *
74474014 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCTAGT-GTTATAT
74474054 CCGG
1 CCGG
74474058 CTAAATTCCG
Statistics
Matches: 144, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 106 0.74
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.28
Consensus pattern (39 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGTTATAT
Found at i:74474057 original size:79 final size:80
Alignment explanation
Indices: 74473851--74474061 Score: 309
Period size: 80 Copynumber: 2.7 Consensus size: 80
74473841 CAATTGAATG
* * * * *
74473851 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATATCCGGGTTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
*
74473916 TTTGTGTGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
74473931 ATATCCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
74473996 TTTGTGCGAGTTG-T
66 TTTGTGCGAGTTGCT
* *
74474010 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAA
74474062 ATTCCGAAGA
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
78 6 0.05
79 42 0.36
80 69 0.59
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:74481997 original size:40 final size:40
Alignment explanation
Indices: 74481942--74482145 Score: 275
Period size: 40 Copynumber: 5.1 Consensus size: 40
74481932 TGAATGATAC
* * * *
74481942 CCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
74481982 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
74482022 CTGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * *
74482062 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* ** *
74482102 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
74482142 CCGG
1 CCGG
74482146 CTAAATTCCA
Statistics
Matches: 145, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 143 0.99
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:74482086 original size:80 final size:80
Alignment explanation
Indices: 74481938--74482149 Score: 311
Period size: 80 Copynumber: 2.7 Consensus size: 80
74481928 CAATTGAATG
* * * *
74481938 ATACCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGGTTAAGACCCGAAGGC
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTG-TTATATCCGGGCTAAGACCCGAAGGC
74482002 ATTTGTGCGAGTTGCT
65 ATTTGTGCGAGTTGCT
* * *
74482018 ATATCTGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
74482083 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGCT
* * *
74482098 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAA
74482150 ATTCCAAAGA
Statistics
Matches: 118, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
79 6 0.05
80 110 0.93
81 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
ATACCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCT
Found at i:74490740 original size:58 final size:57
Alignment explanation
Indices: 74490650--74490805 Score: 174
Period size: 56 Copynumber: 2.7 Consensus size: 57
74490640 CTATTGACCT
** * *
74490650 TGTTATAGGAAGGATTTAGCCTGGACAGGTAATCCTGATATAATAC-CTCTCGAGTATA
1 TGTTATATAAAGGATTTAGCCTGGACTGGTAATCCTGATATAA-ACTCT-TCGAGCATA
* * * * *
74490708 TGTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGAACTCTTTGAGCATA
1 TGTTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTGATATAAACTCTTCGAGCATA
*
74490764 TGTTATATAAAGGATTTAGCCTGGACTGGTAATCCTGTTATA
1 TGTTATATAAAGGATTTAGCCTGGACTGGTAATCCTGATATA
74490806 CACTATTGAC
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
55 2 0.02
56 41 0.51
57 5 0.06
58 32 0.40
59 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.35
Consensus pattern (57 bp):
TGTTATATAAAGGATTTAGCCTGGACTGGTAATCCTGATATAAACTCTTCGAGCATA
Found at i:74492522 original size:45 final size:45
Alignment explanation
Indices: 74492470--74492573 Score: 111
Period size: 45 Copynumber: 2.3 Consensus size: 45
74492460 AATGGTTGTT
* * *
74492470 GACACACAACAAAAA-CACCGTAAATGGAATCTGCCTATGGCTATG
1 GACACACAACAAAAATAACCATAAAT-GAAACTGCCTATGGCTATG
* * * * *
74492515 GATACACAGCAAAAATAATCATAGATGAAACTGCCTATGGTTATG
1 GACACACAACAAAAATAACCATAAATGAAACTGCCTATGGCTATG
*
74492560 GGCACACAACAAAA
1 GACACACAACAAAA
74492574 TAATGCAAAT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
45 41 0.87
46 6 0.13
ACGTcount: A:0.43, C:0.21, G:0.17, T:0.18
Consensus pattern (45 bp):
GACACACAACAAAAATAACCATAAATGAAACTGCCTATGGCTATG
Found at i:74495361 original size:21 final size:22
Alignment explanation
Indices: 74495336--74495378 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
74495326 AGGGGAAATT
74495336 TTCAAAAAGAAAAGAAA-AAAA
1 TTCAAAAAGAAAAGAAATAAAA
74495357 TTCAAAAAGAAAAGAAATAAAA
1 TTCAAAAAGAAAAGAAATAAAA
74495379 CAAAATCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (22 bp):
TTCAAAAAGAAAAGAAATAAAA
Found at i:74500905 original size:93 final size:93
Alignment explanation
Indices: 74500793--74500963 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
74500783 GCCCATAAGT
* *
74500793 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74500858 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74500886 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74500951 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74500964 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74500979 original size:46 final size:46
Alignment explanation
Indices: 74500785--74500965 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
74500775 TGTAACCCGC
* * *
74500785 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
74500831 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
74500881 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
74500924 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
74500966 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:74503374 original size:30 final size:30
Alignment explanation
Indices: 74503330--74503418 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
74503320 CAAAGATAAC
*
74503330 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
74503359 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
74503389 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
74503419 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:74503378 original size:15 final size:14
Alignment explanation
Indices: 74503330--74503412 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
74503320 CAAAGATAAC
*
74503330 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
74503344 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
74503359 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
74503374 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
74503389 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
74503404 AAGAAACCC
1 AAGAAACCC
74503413 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:74503418 original size:15 final size:15
Alignment explanation
Indices: 74503341--74503418 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
74503331 AGAAAACCGA
74503341 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
74503356 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
74503370 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
74503385 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
74503401 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
74503416 ATA
1 ATA
74503419 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:74506480 original size:93 final size:93
Alignment explanation
Indices: 74506368--74506538 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
74506358 GCCCATAAGT
* *
74506368 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74506433 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
74506461 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
74506526 CGAGTTCGGATGC
66 CGAGTTCGGATGC
74506539 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:74506554 original size:46 final size:46
Alignment explanation
Indices: 74506360--74506540 Score: 233
Period size: 46 Copynumber: 3.9 Consensus size: 46
74506350 TGTAACCCGC
* * *
74506360 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
74506406 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
74506456 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
74506499 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
74506541 AACCATCCTA
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 72 0.62
47 32 0.28
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:74511383 original size:2 final size:2
Alignment explanation
Indices: 74511376--74511403 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
74511366 ACTCCTAATA
74511376 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74511404 TCTAATGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74512679 original size:32 final size:32
Alignment explanation
Indices: 74512638--74512701 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
74512628 AATACAAGTT
74512638 ATATTTCCATATTACAATTCGACCATGTAATA
1 ATATTTCCATATTACAATTCGACCATGTAATA
*
74512670 ATATTTCCATATTACAATTTGACCATGTAATA
1 ATATTTCCATATTACAATTCGACCATGTAATA
74512702 CCACTTAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.39
Consensus pattern (32 bp):
ATATTTCCATATTACAATTCGACCATGTAATA
Found at i:74514383 original size:46 final size:47
Alignment explanation
Indices: 74514308--74514478 Score: 149
Period size: 46 Copynumber: 3.6 Consensus size: 47
74514298 GGGGTAGGGT
*
74514308 GCCGATGTCATATCCCAGACATGGTCTTACACTGAC-TATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGACTTA-CATCTCG-AG
* * * *
74514356 GCCGATGCATGTCCTAGCCAT-GTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGACTTACATCTCGAG
* * *
74514402 GCCGATGCATGTCCC-GAACAT-GTCTTATACTAGCAC-T-CGTCTCGAT
1 GCCGATGCATGTCCCAG-ACATGGTCTTACACT-G-ACTTACATCTCGAG
*
74514448 GCCAATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATG-CATGTCCCAGACATGGTCTTACA
74514479 TAGGCTCTCA
Statistics
Matches: 103, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
45 2 0.02
46 58 0.56
47 27 0.26
48 16 0.16
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGACTTACATCTCGAG
Found at i:74516538 original size:19 final size:19
Alignment explanation
Indices: 74516514--74516552 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
74516504 TCAAACATAG
74516514 AATCAAAACTAATTTTCTT
1 AATCAAAACTAATTTTCTT
74516533 AATCAAAACTAATTTTCTT
1 AATCAAAACTAATTTTCTT
74516552 A
1 A
74516553 CTTTTAGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (19 bp):
AATCAAAACTAATTTTCTT
Found at i:74517052 original size:19 final size:19
Alignment explanation
Indices: 74517030--74517069 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
74517020 ACTCAAAAAG
74517030 AATTTATTAATTCAAAGAT
1 AATTTATTAATTCAAAGAT
74517049 AATTTATTAATTCAAAGAT
1 AATTTATTAATTCAAAGAT
74517068 AA
1 AA
74517070 GTTAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (19 bp):
AATTTATTAATTCAAAGAT
Found at i:74531083 original size:40 final size:40
Alignment explanation
Indices: 74531038--74531204 Score: 151
Period size: 40 Copynumber: 4.2 Consensus size: 40
74531028 CGGAATATAA
74531038 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74531078 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
74531118 CCGGATGTAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74531157 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
74531197 CCGGATAT
1 CCGGATAT
74531205 CATTCAATTT
Statistics
Matches: 101, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
39 31 0.31
40 69 0.68
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74531187 original size:79 final size:80
Alignment explanation
Indices: 74531054--74531202 Score: 189
Period size: 79 Copynumber: 1.9 Consensus size: 80
74531044 ATAATCACGT
*
74531054 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
74531118 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
74531134 GCACAATTGCCTTC-GGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
74531196 CCCGGAT
64 CCCGGAT
74531203 ATCATTCAAT
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
78 3 0.05
79 43 0.72
80 14 0.23
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:74541753 original size:48 final size:47
Alignment explanation
Indices: 74541607--74541775 Score: 196
Period size: 48 Copynumber: 3.6 Consensus size: 47
74541597 AAGTTGACGC
* *
74541607 CATGTCCCAGACAGGTCATACACTAGCTTGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TGTATATCTCGAGGCCGATG
* * * * * ** * *
74541655 CATATCCTAGACATATCTTACACTAGCTCT-CATCTTAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTGTATATCTCGAGGCCGATG
* *
74541701 CATGTCCCAAACATGTCTTACACTGGCTGGTATATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-GTATATCTCGAGGCCGATG
74541749 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
74541776 ACACATATCA
Statistics
Matches: 95, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
46 34 0.36
47 3 0.03
48 58 0.61
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTGTATATCTCGAGGCCGATG
Found at i:74545611 original size:31 final size:31
Alignment explanation
Indices: 74545576--74545728 Score: 184
Period size: 31 Copynumber: 4.9 Consensus size: 31
74545566 GAGCATCAAC
*
74545576 CATTCATA-TTTACATATTCATACCTTGTAAT
1 CATTCATACTTT-CATATTCATACCCTGTAAT
* *
74545607 CATTCATACCTTT-ATAGTCATGCCCTGTAAT
1 CATTCATA-CTTTCATATTCATACCCTGTAAT
* * *
74545638 CATTCATACTGTCATATTCATATCTTGTAAT
1 CATTCATACTTTCATATTCATACCCTGTAAT
* *
74545669 CATTCATACTTTTATATCCATACCCTGTAAT
1 CATTCATACTTTCATATTCATACCCTGTAAT
* *
74545700 CATTCATATTTTCATATTCATACTCTGTA
1 CATTCATACTTTCATATTCATACCCTGTA
74545729 TTATCACATA
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
30 3 0.03
31 96 0.94
33 3 0.03
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (31 bp):
CATTCATACTTTCATATTCATACCCTGTAAT
Found at i:74545613 original size:17 final size:17
Alignment explanation
Indices: 74545591--74545707 Score: 99
Period size: 17 Copynumber: 7.4 Consensus size: 17
74545581 ATATTTACAT
74545591 ATTCATACCTTGTAATC
1 ATTCATACCTTGTAATC
74545608 ATTCATACCTT-T-AT-
1 ATTCATACCTTGTAATC
* * *
74545622 AGTCATGCCCTGTAATC
1 ATTCATACCTTGTAATC
*
74545639 ATTCATA-C-TGTCAT-
1 ATTCATACCTTGTAATC
*
74545653 ATTCATATCTTGTAATC
1 ATTCATACCTTGTAATC
*
74545670 ATTCATA-CTT-TTAT-
1 ATTCATACCTTGTAATC
* *
74545684 ATCCATACCCTGTAATC
1 ATTCATACCTTGTAATC
74545701 ATTCATA
1 ATTCATA
74545708 TTTTCATATT
Statistics
Matches: 79, Mismatches: 12, Indels: 18
0.72 0.11 0.17
Matches are distributed among these distances:
14 21 0.27
15 14 0.18
16 15 0.19
17 29 0.37
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (17 bp):
ATTCATACCTTGTAATC
Found at i:74545656 original size:62 final size:62
Alignment explanation
Indices: 74545588--74545722 Score: 209
Period size: 62 Copynumber: 2.2 Consensus size: 62
74545578 TTCATATTTA
*
74545588 CATATTCATACCTTGTAATCATTCATACCTTTATAGT-CATGCCCTGTAATCATTCATACTGT
1 CATATTCATACCTTGTAATCATTCATACCTTTATA-TCCATACCCTGTAATCATTCATACTGT
* * * *
74545650 CATATTCATATCTTGTAATCATTCATACTTTTATATCCATACCCTGTAATCATTCATATTTT
1 CATATTCATACCTTGTAATCATTCATACCTTTATATCCATACCCTGTAATCATTCATACTGT
74545712 CATATTCATAC
1 CATATTCATAC
74545723 TCTGTATTAT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 1 0.02
62 65 0.98
ACGTcount: A:0.29, C:0.23, G:0.05, T:0.43
Consensus pattern (62 bp):
CATATTCATACCTTGTAATCATTCATACCTTTATATCCATACCCTGTAATCATTCATACTGT
Found at i:74545658 original size:14 final size:14
Alignment explanation
Indices: 74545631--74545723 Score: 60
Period size: 14 Copynumber: 6.1 Consensus size: 14
74545621 TAGTCATGCC
74545631 CTGTAATCATTCATA
1 CTGTAAT-ATTCATA
*
74545646 CTGTCATATTCATA
1 CTGTAATATTCATA
74545660 TCTTGTAATCATTCATA
1 -C-TGTAAT-ATTCATA
* * *
74545677 CTTTTATATCCATA
1 CTGTAATATTCATA
74545691 CCCTGTAATCATTCATA
1 --CTGTAAT-ATTCATA
* * *
74545708 TTTTCATATTCATA
1 CTGTAATATTCATA
74545722 CT
1 CT
74545724 CTGTATTATC
Statistics
Matches: 60, Mismatches: 12, Indels: 13
0.71 0.14 0.15
Matches are distributed among these distances:
14 21 0.35
15 15 0.25
16 11 0.18
17 13 0.22
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.45
Consensus pattern (14 bp):
CTGTAATATTCATA
Found at i:74545762 original size:5 final size:5
Alignment explanation
Indices: 74545752--74545805 Score: 72
Period size: 5 Copynumber: 10.2 Consensus size: 5
74545742 ATCATAAATC
*
74545752 TCAAT TCAAT TCAAT TCAAT TCAAT TCAAT TCATAT GCAATT TCACAT
1 TCAAT TCAAT TCAAT TCAAT TCAAT TCAAT TCA-AT TCAA-T TCA-AT
74545800 TCAAT T
1 TCAAT T
74545806 TCATAATCTC
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
5 32 0.73
6 11 0.25
7 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:74551284 original size:2 final size:2
Alignment explanation
Indices: 74551228--74551267 Score: 71
Period size: 2 Copynumber: 19.5 Consensus size: 2
74551218 AGATAGAAAG
74551228 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
74551268 AAGAAATTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:74553089 original size:26 final size:26
Alignment explanation
Indices: 74553056--74553116 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
74553046 CTTTTTGAGT
74553056 TTTTCTTTTCAAGAATTTCTCTCGAG
1 TTTTCTTTTCAAGAATTTCTCTCGAG
*
74553082 TTTTCTTTTCAAGAATTTCTCTTGAG
1 TTTTCTTTTCAAGAATTTCTCTCGAG
74553108 TTTTCTTTT
1 TTTTCTTTT
74553117 AGAAGAGTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.16, C:0.16, G:0.10, T:0.57
Consensus pattern (26 bp):
TTTTCTTTTCAAGAATTTCTCTCGAG
Found at i:74560010 original size:53 final size:53
Alignment explanation
Indices: 74559930--74560089 Score: 145
Period size: 52 Copynumber: 3.1 Consensus size: 53
74559920 AGAGGTTTAA
* * * *
74559930 TTTAGTTAAAATAATTAAGATTTTAAATTAATAAGTTAGATAATAATTTAGAT
1 TTTAATTAAGATAATTAGGAATTTAAATTAATAAGTTAGATAATAATTTAGAT
* ** *
74559983 TTTAATTAAGATAATTAGGAGTTTAAA-T-A-AA-TTAGGATAATTATATTTTTAA
1 TTTAATTAAGATAATTAGGAATTTAAATTAATAAGTTA-GATAA-TA-ATTTAGAT
*
74560035 TTTAGA-TAAGATAATTAGGAATTT-CATTAAT-AGATTAGATAATAATTTAGAT
1 TTTA-ATTAAGATAATTAGGAATTTAAATTAATAAG-TTAGATAATAATTTAGAT
74560087 TTT
1 TTT
74560090 TTGGTGAAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 19
0.74 0.10 0.16
Matches are distributed among these distances:
49 3 0.03
50 7 0.08
51 4 0.05
52 36 0.42
53 28 0.33
54 5 0.06
55 3 0.03
ACGTcount: A:0.44, C:0.01, G:0.11, T:0.44
Consensus pattern (53 bp):
TTTAATTAAGATAATTAGGAATTTAAATTAATAAGTTAGATAATAATTTAGAT
Found at i:74560386 original size:25 final size:23
Alignment explanation
Indices: 74560357--74560403 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 23
74560347 AATAAAAAAC
*
74560357 TTTAAAATATAATAAATCAAATATA
1 TTTAAAACATAA-AAA-CAAATATA
74560382 TTTAAAACATAAAAACAAATAT
1 TTTAAAACATAAAAACAAATAT
74560404 TAAAACAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 3 0.14
25 11 0.52
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATATA
Found at i:74560420 original size:19 final size:20
Alignment explanation
Indices: 74560383--74560421 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
74560373 TCAAATATAT
74560383 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
74560403 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
74560422 AATAATGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:74563647 original size:13 final size:13
Alignment explanation
Indices: 74563629--74563660 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
74563619 ATGGTTGCCG
74563629 AATATACAAACAT
1 AATATACAAACAT
74563642 AATATACAAACAT
1 AATATACAAACAT
74563655 ACATAT
1 A-ATAT
74563661 GCATGTGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.59, C:0.16, G:0.00, T:0.25
Consensus pattern (13 bp):
AATATACAAACAT
Found at i:74570203 original size:53 final size:52
Alignment explanation
Indices: 74570140--74570390 Score: 175
Period size: 53 Copynumber: 4.8 Consensus size: 52
74570130 TAATTTAGAT
* *
74570140 TTTAGTTAAGATAATTAGAAGTTTAAATTAAATTAGGATAATTAAAGTTCTAA
1 TTTAATTAAGATAATTA-AAGTTTAAATTAAATTAGGATAATTAAAGTTTTAA
* * * *
74570193 TCTATTTAAGATCATTAATAATTTAAATTAATAGGTTA-GATAA-T-AA-TTTTAGA
1 TTTAATTAAGATAATTAA-AGTTTAAATTAA-A--TTAGGATAATTAAAGTTTTA-A
* *
74570246 TTTTAATTAAGATAATTAGGAG-TTAAATTTAAATTAGGATAATTAGAGTTTTAA
1 -TTTAATTAAGATAATTA-AAGTTTAAA-TTAAATTAGGATAATTAAAGTTTTAA
74570300 TTTAGA-TAAGATAATTAAAGTTT-AATTAATAGGTTA-GATAA-T-AA--TTTAGA
1 TTTA-ATTAAGATAATTAAAGTTTAAATTAA-A--TTAGGATAATTAAAGTTTTA-A
* * *
74570350 TTTTAATTAAAATAATTAGAATTTTAAATTATATTAGGATA
1 -TTTAATTAAGATAATTA-AAGTTTAAATTAAATTAGGATA
74570391 GTTAGAGTGA
Statistics
Matches: 159, Mismatches: 16, Indels: 48
0.71 0.07 0.22
Matches are distributed among these distances:
49 4 0.03
50 5 0.03
51 26 0.16
52 22 0.14
53 62 0.39
54 27 0.17
55 10 0.06
56 3 0.02
ACGTcount: A:0.45, C:0.01, G:0.12, T:0.42
Consensus pattern (52 bp):
TTTAATTAAGATAATTAAAGTTTAAATTAAATTAGGATAATTAAAGTTTTAA
Found at i:74570250 original size:107 final size:104
Alignment explanation
Indices: 74570125--74570390 Score: 381
Period size: 107 Copynumber: 2.5 Consensus size: 104
74570115 ATTTCTTCCC
*
74570125 GATAATAATTTAGATTTTAGTTAAGATAATTAGAAGTTTAAATTAAATTAGGATAATTAAAGTTC
1 GATAATAATTTAGATTTTAATTAAGATAATTAGAAGTTTAAATTAAATTAGGATAATTAAAGTTC
** *
74570190 TAATCTATTTAAGATCATTAATAATTTAAATTAATAGGTTA
66 TAATCTAGATAAGATAATTAA-AATTT-AATTAATAGGTTA
* *
74570231 GATAATAATTTTAGATTTTAATTAAGATAATTAGGAG-TTAAATTTAAATTAGGATAATTAGAGT
1 GATAATAA-TTTAGATTTTAATTAAGATAATTAGAAGTTTAAA-TTAAATTAGGATAATTAAAGT
* * *
74570295 TTTAATTTAGATAAGATAATTAAAGTTTAATTAATAGGTTA
64 TCTAATCTAGATAAGATAATTAAAATTTAATTAATAGGTTA
* * *
74570336 GATAATAATTTAGATTTTAATTAAAATAATTAGAATTTTAAATTATATTAGGATA
1 GATAATAATTTAGATTTTAATTAAGATAATTAGAAGTTTAAATTAAATTAGGATA
74570391 GTTAGAGTGA
Statistics
Matches: 144, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
104 37 0.26
105 26 0.18
106 17 0.12
107 64 0.44
ACGTcount: A:0.45, C:0.01, G:0.12, T:0.42
Consensus pattern (104 bp):
GATAATAATTTAGATTTTAATTAAGATAATTAGAAGTTTAAATTAAATTAGGATAATTAAAGTTC
TAATCTAGATAAGATAATTAAAATTTAATTAATAGGTTA
Found at i:74570294 original size:26 final size:26
Alignment explanation
Indices: 74570145--74570398 Score: 114
Period size: 27 Copynumber: 9.6 Consensus size: 26
74570135 TAGATTTTAG
*
74570145 TTAAGATAATTAGAAGTTTAAATTAAA
1 TTAAGATAATTAG-AGTTTAATTTAAA
* * * *
74570172 TTAGGATAATTAAAGTTCTAATCT-AT
1 TTAAGATAATTAGAGTT-TAATTTAAA
* * * *
74570198 TTAAGATCATTAATAATTTAAATTAATA
1 TTAAGATAATT-AGAGTTTAATTTAA-A
* *
74570226 GGTT-AGATAA-TA-ATTTTAGATTTTAA
1 --TTAAGATAATTAGAGTTTA-ATTTAAA
*
74570252 TTAAGATAATTAGGAGTTAAATTTAAA
1 TTAAGATAATTA-GAGTTTAATTTAAA
* *
74570279 TTAGGATAATTAGAGTTTTAATTTAGA
1 TTAAGATAATTAGAG-TTTAATTTAAA
*
74570306 -TAAGATAATTAAAGTTTAA-TTAATA
1 TTAAGATAATTAGAGTTTAATTTAA-A
*
74570331 GGTT-AGATAA-TA-A-TTTAGATTTTAA
1 --TTAAGATAATTAGAGTTTA-ATTTAAA
* * * *
74570356 TTAAAATAATTAGAATTTTAAATTATA
1 TTAAGATAATTAG-AGTTTAATTTAAA
* *
74570383 TTAGGATAGTTAGAGT
1 TTAAGATAATTAGAGT
74570399 GATGCGGTCG
Statistics
Matches: 170, Mismatches: 34, Indels: 47
0.68 0.14 0.19
Matches are distributed among these distances:
23 2 0.01
24 14 0.08
25 17 0.10
26 48 0.28
27 72 0.42
28 10 0.06
29 5 0.03
30 2 0.01
ACGTcount: A:0.44, C:0.01, G:0.13, T:0.42
Consensus pattern (26 bp):
TTAAGATAATTAGAGTTTAATTTAAA
Found at i:74570307 original size:21 final size:21
Alignment explanation
Indices: 74570241--74570308 Score: 57
Period size: 26 Copynumber: 3.0 Consensus size: 21
74570231 GATAATAATT
*
74570241 TTAGA-TTTTAATTAAGATAA
1 TTAGAGTTTTAATTTAGATAA
*
74570261 TTAGGAGTTAAATTTAAATTAGGATAA
1 TTA-GAG-T---TTTAATTTA-GATAA
74570288 TTAGAGTTTTAATTTAGATAA
1 TTAGAGTTTTAATTTAGATAA
74570309 GATAATTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 13
0.70 0.06 0.24
Matches are distributed among these distances:
20 3 0.08
21 7 0.18
22 8 0.21
23 1 0.03
25 1 0.03
26 10 0.26
27 8 0.21
ACGTcount: A:0.43, C:0.00, G:0.15, T:0.43
Consensus pattern (21 bp):
TTAGAGTTTTAATTTAGATAA
Found at i:74575948 original size:48 final size:48
Alignment explanation
Indices: 74575825--74576202 Score: 319
Period size: 48 Copynumber: 7.9 Consensus size: 48
74575815 GGTAAGATGT
* * * * * * * *
74575825 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAATGT
1 CGATGCCATGTCCCAAACATGATCTTACACTAG--CTCACATATCGAGGC
* * * * *
74575875 C-ATGCCATGTTCCAAACATGGTCTTACACTAACCCACATGTCGAGGC
1 CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATATCGAGGC
* * * * * * *
74575922 CAATGCCATGTCCCAGACATTATCTTACACTAGCTCTCATATCAATGT
1 CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATATCGAGGC
* * *
74575970 CGATGCCATGTTCCAAACATGATCTTACACTGGCTCACATATTGAGGC
1 CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATATCGAGGC
* * * * *
74576018 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC-ATTGT
1 CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATATCGA-GGC
* * * *
74576066 CGATGCCATGTTCCAAACATGGTTTTACACTGGCTCACATATCGAGGC
1 CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATATCGAGGC
* * * * * * *
74576114 TGATGCCATGTCTCATACATGGTCTTACACTAGCTCTCATATCAATGC
1 CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATATCGAGGC
* * * * *
74576162 CGATGTCATATTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATA
74576203 ACCCTAGTAT
Statistics
Matches: 261, Mismatches: 64, Indels: 8
0.78 0.19 0.02
Matches are distributed among these distances:
47 11 0.04
48 222 0.85
49 27 0.10
50 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGATCTTACACTAGCTCACATATCGAGGC
Found at i:74576009 original size:96 final size:96
Alignment explanation
Indices: 74575825--74576202 Score: 560
Period size: 96 Copynumber: 3.9 Consensus size: 96
74575815 GGTAAGATGT
* *
74575825 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAATGTC-ATGCCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC--ATATCAATGTCGATGCCATGTTCCA
** * *
74575889 AACATGGTCTTACACTAACCCACATGTCGAGGC
64 AACATGGTCTTACACTGGCTCACATATCGAGGC
* **
74575922 CAATGCCATGTCCCAGACATTATCTTACACTAGCTCTCATATCAATGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTTCCAAA
* *
74575987 CATGATCTTACACTGGCTCACATATTGAGGC
66 CATGGTCTTACACTGGCTCACATATCGAGGC
*
74576018 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCATTGTCGATGCCATGTTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTTCCAAA
*
74576083 CATGGTTTTACACTGGCTCACATATCGAGGC
66 CATGGTCTTACACTGGCTCACATATCGAGGC
* * * * * *
74576114 TGATGCCATGTCTCATACATGGTCTTACACTAGCTCTCATATCAATGCCGATGTCATATTCCAAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTTCCAAA
74576179 CATGGTCTTACACTGGCTCACATA
66 CATGGTCTTACACTGGCTCACATA
74576203 ACCCTAGTAT
Statistics
Matches: 254, Mismatches: 26, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
95 11 0.04
96 210 0.83
97 33 0.13
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.29
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGTCGATGCCATGTTCCAAA
CATGGTCTTACACTGGCTCACATATCGAGGC
Found at i:74576094 original size:144 final size:144
Alignment explanation
Indices: 74575821--74576202 Score: 403
Period size: 144 Copynumber: 2.6 Consensus size: 144
74575811 AAAGGGTAAG
* * * *
74575821 ATGTCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCAATGTC-ATGCCATGT
1 ATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-T-AATGCCGATGCCATGT
* * * * *
74575885 TCCAAACATGGTCTTACACTAACCCACATGTCGAGGCCAATGCCATGTCCCAGACATTATCTTAC
64 TCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCAATGCCATGTCCCAAACATGATCTTAC
*
74575950 ACTAGCTCTCATATCA
129 ACTAGCTCACATATCA
* * * * *
74575966 ATGTCGATGCCATGTTCCAAACATGATCTTACACTGGCTCACATATTGAGGCCGATGCCATGTCC
1 ATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATTAATGCCGATGCCATGTTC
* * * * * * * *
74576031 CAGACATGGTCTTACACTAGCTCTCATATC-ATTGTCGATGCCATGTTCCAAACATGGTTTTACA
66 CAAACATGGTCTTACACTAGCTCACATATCGA-GGCCAATGCCATGTCCCAAACATGATCTTACA
* *
74576095 CTGGCTCACATATCG
130 CTAGCTCACATATCA
* * * * * *
74576110 A-GGCTGATGCCATG-TCTCATACATGGTCTTACACTAGCTCTCATATCAATGCCGATGTCATAT
1 ATGTC-GATGCCATGTTC-CAAACATGGTCTTACACTGGCTCTCATATTAATGCCGATGCCATGT
*
74576173 TCCAAACATGGTCTTACACTGGCTCACATA
64 TCCAAACATGGTCTTACACTAGCTCACATA
74576203 ACCCTAGTAT
Statistics
Matches: 194, Mismatches: 39, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
143 8 0.04
144 145 0.75
145 41 0.21
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (144 bp):
ATGTCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATTAATGCCGATGCCATGTTC
CAAACATGGTCTTACACTAGCTCACATATCGAGGCCAATGCCATGTCCCAAACATGATCTTACAC
TAGCTCACATATCA
Found at i:74579483 original size:45 final size:45
Alignment explanation
Indices: 74579419--74579510 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
74579409 AGGTAAAATA
74579419 TTATCCTAATTTGGATTTCTATAATGCTCGGTTAGGAAATTTACC
1 TTATCCTAATTTGGATTTCTATAATGCTCGGTTAGGAAATTTACC
74579464 TTATCCTAATTTGGATTTCTATAATGCTCGGTTAGGAAATTTACC
1 TTATCCTAATTTGGATTTCTATAATGCTCGGTTAGGAAATTTACC
74579509 TT
1 TT
74579511 CGCTTACCTG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.26, C:0.15, G:0.15, T:0.43
Consensus pattern (45 bp):
TTATCCTAATTTGGATTTCTATAATGCTCGGTTAGGAAATTTACC
Found at i:74581959 original size:30 final size:30
Alignment explanation
Indices: 74581913--74581991 Score: 104
Period size: 30 Copynumber: 2.6 Consensus size: 30
74581903 TTAAAAAAAT
* * *
74581913 AATTCTACTCTTTTTAAAAGGTTAATGATCA
1 AATTCAACT-TTTTTAAAAGATTAATAATCA
* *
74581944 AATTCGATTTTTTTAAAAGATTAATAATCA
1 AATTCAACTTTTTTAAAAGATTAATAATCA
74581974 AATTCAACTTTTTTAAAA
1 AATTCAACTTTTTTAAAA
74581992 TTGAATGTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 35 0.83
31 7 0.17
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (30 bp):
AATTCAACTTTTTTAAAAGATTAATAATCA
Found at i:74588081 original size:48 final size:48
Alignment explanation
Indices: 74588010--74588339 Score: 283
Period size: 48 Copynumber: 6.9 Consensus size: 48
74588000 GGTGAATTGT
* * * * *
74588010 CGATGCCATGTTCCAAACATGGTCTTATACTGGCTCACATGTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGC
* * *** * * *
74588058 CGATGCCATGTCCTAGACATGGTCTTACACTAACTCTTGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGC
* * *
74588106 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATAAT-GTGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCA-CAT-ATCGAGGC
* * * * *
74588154 TGATGCTATGTCCCAGACATGGTCTTACACTAG-TGCACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCT-CACATATCGAGGC
* * * *
74588202 CTATACCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TAC-ATTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT-CGA-GGC
* * * * * * *
74588250 TGATACCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGC
*
74588298 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT
74588340 GACCCAAATG
Statistics
Matches: 223, Mismatches: 49, Indels: 20
0.76 0.17 0.07
Matches are distributed among these distances:
47 5 0.02
48 214 0.96
49 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGC
Found at i:74588174 original size:96 final size:95
Alignment explanation
Indices: 74588010--74588328 Score: 315
Period size: 96 Copynumber: 3.3 Consensus size: 95
74588000 GGTGAATTGT
* * * * * * *
74588010 CGATGCCATGTTCCAAACATGGTCTTATACTGGCTCA-CAT-GTCGAGGCCGATGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCT-ATCATAAT-GTGGCTGATGCCATGTCCCA
** *
74588073 GACATGGTCTTACACTAACTCTTGTCTCAATGC
64 GACATGGTCTTACACT-ACTCTCATATCAATGC
* *
74588106 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGTTGATGCTATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCCATGTCCCAGA
* * *
74588171 CATGGTCTTACACTAGTGCACATATCAATGT
66 CATGGTCTTACACTACT-CTCATATCAATGC
* * * * * *
74588202 CTATACCATGTCCCAGACATGGTCTTACACTAGCTCTCATTACAT-T-GCTGATACCATGTTCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCA-TA-ATGTGGCTGATGCCATGTCCCA
* * *
74588265 AACATGGTCTTACACTGGCTCTCATATC-GTGGC
64 GACATGGTCTTACACT-ACTCTCATATCAAT-GC
74588298 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
74588329 AGCACACATA
Statistics
Matches: 185, Mismatches: 31, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
95 4 0.02
96 174 0.94
97 5 0.03
98 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAATGTGGCTGATGCCATGTCCCAGA
CATGGTCTTACACTACTCTCATATCAATGC
Found at i:74588231 original size:144 final size:144
Alignment explanation
Indices: 74588010--74588339 Score: 394
Period size: 144 Copynumber: 2.3 Consensus size: 144
74588000 GGTGAATTGT
* * * * * * * * * * * *
74588010 CGATGCCATGTTCCAAACATGGTCTTATACTGGCTCACATGTCGAGGCCGATGCCATGTCCTAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGTCTATACCATGTCCCAGA
** * *
74588075 CATGGTCTTACACTAACTCTTGTCT-CAATGCCGATGCCATGTCCCAGACATGGTCTTACACTGG
66 CATGGTCTTACACTAACTCTCAT-TACAATGCCGATACCATGTCCCAAACATGGTCTTACACTGG
*
74588139 CTATCATAAT-GTGGT
130 CTATCAT-ATCGTGGC
* * **
74588154 TGATGCTATGTCCCAGACATGGTCTTACACTAGTGCACATATCAATGTCTATACCATGTCCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGTCTATACCATGTCCCAGA
* * * *
74588219 CATGGTCTTACACTAGCTCTCATTACATTGCTGATACCATGTTCCAAACATGGTCTTACACTGGC
66 CATGGTCTTACACTAACTCTCATTACAATGCCGATACCATGTCCCAAACATGGTCTTACACTGGC
*
74588284 TCTCATATCGTGGC
131 TATCATATCGTGGC
74588298 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATAT
74588340 GACCCAAATG
Statistics
Matches: 155, Mismatches: 29, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
143 3 0.02
144 152 0.98
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (144 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAATGTCTATACCATGTCCCAGA
CATGGTCTTACACTAACTCTCATTACAATGCCGATACCATGTCCCAAACATGGTCTTACACTGGC
TATCATATCGTGGC
Found at i:74589469 original size:17 final size:18
Alignment explanation
Indices: 74589431--74589471 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
74589421 ATGCACTCAT
*
74589431 ATAAATATAATATAACAC
1 ATAAATATAATATAACAA
74589449 ATAAA-ATAATATTAA-AA
1 ATAAATATAATA-TAACAA
74589466 ATAAAT
1 ATAAAT
74589472 TCTCTAATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (18 bp):
ATAAATATAATATAACAA
Found at i:74596084 original size:48 final size:47
Alignment explanation
Indices: 74595994--74596085 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 47
74595984 TTATTATATT
* * * *
74595994 GCCAATGCCATGTTCCAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCAATGCCATGTCCCAACATGGTCTTACACTAGCACACATATCGTG
*
74596041 GCCAATGTCATGTCCCAAACATGGTCTTACACTAGCACACATATC
1 GCCAATGCCATGTCCC-AACATGGTCTTACACTAGCACACATATC
74596086 ACCCAAATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 14 0.36
48 25 0.64
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (47 bp):
GCCAATGCCATGTCCCAACATGGTCTTACACTAGCACACATATCGTG
Found at i:74602576 original size:48 final size:48
Alignment explanation
Indices: 74602520--74602799 Score: 236
Period size: 48 Copynumber: 5.9 Consensus size: 48
74602510 AGGGATATGA
* ** * *
74602520 GTGATCCCATGTAAGATCATGTCCAGGTCATTGCATTGGCATCGAAAT
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAAAT
*
74602568 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGTATCGAAAT
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAAAT
*
74602616 GTGATCCCATGTAAGACCGTGTCTGGGACATGGCATTGGCATC--AAT
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAAAT
* * * * *
74602662 GTGAGACATCGTGTAAGACCATAG-CTGGG-CTATCGGC-TTCGGTAT-G-CA-
1 GTGA-TC-CCATGTAAGACCAT-GTCTGGGAC-AT-GGCATT-GGCATCGAAAT
* * * *
74602710 -TGATCTCATGTAAGACCATGTCTGGGACATAGCATTGGCATTGACAT
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAAAT
* * * * * * *
74602757 TTGATCCAATGTAAGACCATATTTAGGATATGGCATTAGCATC
1 GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATC
74602800 CTACTATGTG
Statistics
Matches: 191, Mismatches: 27, Indels: 28
0.78 0.11 0.11
Matches are distributed among these distances:
44 7 0.04
45 23 0.12
46 11 0.06
47 5 0.03
48 136 0.71
49 9 0.05
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (48 bp):
GTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAAAT
Found at i:74613128 original size:19 final size:21
Alignment explanation
Indices: 74613090--74613131 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
74613080 TTTTTATTAG
74613090 TCTTCATTATTATTACTGTTAT
1 TCTTCATTATTATTA-TGTTAT
74613112 TCTTCATTA-TATT-TGTTAT
1 TCTTCATTATTATTATGTTAT
74613131 T
1 T
74613132 TATTATGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
21 4 0.20
22 9 0.45
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.62
Consensus pattern (21 bp):
TCTTCATTATTATTATGTTAT
Found at i:74616764 original size:38 final size:38
Alignment explanation
Indices: 74616639--74616780 Score: 221
Period size: 39 Copynumber: 3.7 Consensus size: 38
74616629 CCGCACAAAG
* * *
74616639 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAA-CTGCACAATT
*
74616679 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACT-GCACAATT
74616718 GCCTTCGGGCTTAGCCCGGATATCATAACTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTGCACAATT
74616756 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74616781 CTCGAACATT
Statistics
Matches: 96, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
38 33 0.34
39 54 0.56
40 9 0.09
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTGCACAATT
Found at i:74624147 original size:39 final size:39
Alignment explanation
Indices: 74624029--74624211 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
74624019 TCGTTCAAAC
* * ** * **
74624029 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
74624069 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
*
74624109 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
74624148 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
74624187 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74624212 CTCGAACATT
Statistics
Matches: 126, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 88 0.70
40 38 0.30
ACGTcount: A:0.23, C:0.31, G:0.22, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:74632881 original size:39 final size:38
Alignment explanation
Indices: 74632803--74632943 Score: 196
Period size: 39 Copynumber: 3.7 Consensus size: 38
74632793 CCGCACAAAG
* * *
74632803 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAA-CTGCACAATT
*
74632843 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCCCAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACT-GCACAATT
74632882 GCCTTCGGGCTTAGCCCGG--ATCAATAACTGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATC-ATAACTGCACAATT
74632919 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74632944 CTCGAACATT
Statistics
Matches: 92, Mismatches: 5, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
37 29 0.32
38 8 0.09
39 46 0.50
40 9 0.10
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (38 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTGCACAATT
Found at i:74640355 original size:39 final size:39
Alignment explanation
Indices: 74640188--74640369 Score: 240
Period size: 39 Copynumber: 4.6 Consensus size: 39
74640178 TCGTTCAAAC
* * ** * **
74640188 GCCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAAG
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
* * * *
74640228 GCCTTCGGGACTTAACCCGGATATCACAATTTGCACAATT
1 GCCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATT
74640268 GCCTTCGGGCTTAGCCCGGATATCATAACTCGC-CAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
74640306 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
1 GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
74640345 GCCTTCGGGCTTAGCCCGGATATCA
1 GCCTTCGGGCTTAGCCCGGATATCA
74640370 CTCGAACATT
Statistics
Matches: 126, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
38 38 0.30
39 50 0.40
40 38 0.30
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.24
Consensus pattern (39 bp):
GCCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATT
Found at i:74647774 original size:42 final size:43
Alignment explanation
Indices: 74647661--74647811 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
74647651 TAGGATTCCG
* * * *
74647661 ATATGTGATTTCGTGTAAGACCAC-GTCTGGAACATTGGCATCG
1 ATATTTGATTTCGTGTAAGACC-CTGTCTGGGACATAGGCATCA
* * *
74647704 AT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATCGGCATC-
1 ATATT-TGATTT-CGTGTAAGACCCTGTCTGGGACATAGGCATCA
* *
74647747 ATATTTGATTTCGTGTAAGACCCTGTCTGGGACAAAGACATCA
1 ATATTTGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCA
* *
74647790 ATATTTGATTACATGTAAGACC
1 ATATTTGATTTCGTGTAAGACC
74647812 ACGTCTAGGA
Statistics
Matches: 91, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
42 28 0.31
43 34 0.37
44 29 0.32
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
ATATTTGATTTCGTGTAAGACCCTGTCTGGGACATAGGCATCA
Found at i:74649478 original size:68 final size:67
Alignment explanation
Indices: 74649406--74649555 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
74649396 CATCATGTGT
* * * *
74649406 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
74649468 ATGTAG
62 ATGTAG
** * *
74649474 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
74649539 AG
66 AG
74649541 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
74649556 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:74649511 original size:64 final size:64
Alignment explanation
Indices: 74649430--74649613 Score: 185
Period size: 67 Copynumber: 2.8 Consensus size: 64
74649420 AGACATTATG
* *
74649430 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
74649494 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
74649559 AA
63 AA
* * * * *
74649561 ACTG--GCTAGGTCACATGGGTGGTATTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
74649614 CGAACTATAT
Statistics
Matches: 97, Mismatches: 18, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 21 0.22
65 7 0.07
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:74652432 original size:9 final size:9
Alignment explanation
Indices: 74652418--74652449 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
74652408 ATAAGTATAA
74652418 AATTAACCG
1 AATTAACCG
74652427 AATTAACCG
1 AATTAACCG
*
74652436 AATTAATCG
1 AATTAACCG
74652445 AATTA
1 AATTA
74652450 TTTGTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.47, C:0.16, G:0.09, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:74652484 original size:5 final size:6
Alignment explanation
Indices: 74652469--74652516 Score: 69
Period size: 6 Copynumber: 7.5 Consensus size: 6
74652459 AATTATATGT
74652469 TTTTTA TTTTTA TTTTTA TTTTTTAGA TTTTTA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTTT--A TTTTTA TTTTTA TTTTTA TTT
74652517 GTTAAATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
6 28 0.72
7 5 0.13
8 5 0.13
9 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:74652692 original size:18 final size:18
Alignment explanation
Indices: 74652669--74652703 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
74652659 TTTTATTAAT
74652669 TTTTTTCGGTTAACTGAA
1 TTTTTTCGGTTAACTGAA
74652687 TTTTTTCGGTTAACTGA
1 TTTTTTCGGTTAACTGA
74652704 CCGGTTTCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.20, C:0.11, G:0.17, T:0.51
Consensus pattern (18 bp):
TTTTTTCGGTTAACTGAA
Found at i:74659078 original size:31 final size:32
Alignment explanation
Indices: 74659043--74659108 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
74659033 TCTAATGTTT
74659043 TTTAAGACACT-AAATAGAATTTT-TTTTCTTA
1 TTTAAGACACTAAAATAGAATTTTATTTT-TTA
* * *
74659074 TTTAAGAGATTAAAATATAATTTTATTTTTTA
1 TTTAAGACACTAAAATAGAATTTTATTTTTTA
74659106 TTT
1 TTT
74659109 TTAAGGATCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
31 9 0.30
32 17 0.57
33 4 0.13
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.53
Consensus pattern (32 bp):
TTTAAGACACTAAAATAGAATTTTATTTTTTA
Found at i:74661311 original size:73 final size:74
Alignment explanation
Indices: 74661044--74661486 Score: 665
Period size: 74 Copynumber: 6.0 Consensus size: 74
74661034 TACTCTATTA
* * *
74661044 TATGTTATGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGGATTCTAGCA
1 TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
*
74661109 CGTGGATTT
66 CGTGGATTG
* * * * *
74661118 TATGTTTTGTGTTTAGATAGCGCGTTAAGGTTGTTAGCATGTAAAGAAGTTGATGAATTCTAGCA
1 TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
*
74661183 TGTGGATTG
66 CGTGGATTG
* *
74661192 CATGTTGTGTGTTTAGATAGCAAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
1 TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
74661257 CGTGGATTG
66 CGTGGATTG
* * *
74661266 TATGTTGTG-GTTTAGATAGCTAGTTAAGATTGTTAGCATGTAAAGCAGTCGATGAATTCTAGCA
1 TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
*
74661330 TGTGGATTG
66 CGTGGATTG
* * * *
74661339 TATGTTGTG-GTTTAGATAGTGCGTTAAGGTTGTTAGCATGTAAAGCAGTTGATGATTTCTAACA
1 TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
* *
74661403 TGTGGATAG
66 CGTGGATTG
*
74661412 TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGTATTCTAACA
1 TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
74661477 CGTGGATTG
66 CGTGGATTG
74661486 T
1 T
74661487 TGCCTTTGTT
Statistics
Matches: 333, Mismatches: 35, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
73 134 0.40
74 199 0.60
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.38
Consensus pattern (74 bp):
TATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGAATTCTAACA
CGTGGATTG
Found at i:74661440 original size:220 final size:222
Alignment explanation
Indices: 74661044--74661486 Score: 737
Period size: 220 Copynumber: 2.0 Consensus size: 222
74661034 TACTCTATTA
* *
74661044 TATGTTATGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTTGATGGATTCTAGCA
1 TATGTTATGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTCGATGAATTCTAGCA
* *
74661109 CGTGGATTTTATGTTTTGTGTTTAGATAGCGCGTTAAGGTTGTTAGCATGTAAAGAAGTTGATGA
66 CGTGGATTGTATGTTGTGTGTTTAGATAGCGCGTTAAGGTTGTTAGCATGTAAAGAAGTTGATGA
* *
74661174 ATTCTAGCATGTGGATTGCATGTTGTGTGTTTAGATAGCAAGTTAAGATTGTTAGCATGTAAAGC
131 ATTCTAACATGTGGATAGCATGTTGTGTGTTTAGATAGCAAGTTAAGATTGTTAGCATGTAAAGC
74661239 AGTTGATGAATTCTAACACGTGGATTG
196 AGTTGATGAATTCTAACACGTGGATTG
* *
74661266 TATGTTGTG-GTTTAGATAGCTAGTTAAGATTGTTAGCATGTAAAGCAGTCGATGAATTCTAGCA
1 TATGTTATGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTCGATGAATTCTAGCA
* * *
74661330 TGTGGATTGTATGTTGTG-GTTTAGATAGTGCGTTAAGGTTGTTAGCATGTAAAGCAGTTGATGA
66 CGTGGATTGTATGTTGTGTGTTTAGATAGCGCGTTAAGGTTGTTAGCATGTAAAGAAGTTGATGA
* * *
74661394 TTTCTAACATGTGGATAGTATGTTGTGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGC
131 ATTCTAACATGTGGATAGCATGTTGTGTGTTTAGATAGCAAGTTAAGATTGTTAGCATGTAAAGC
*
74661459 AGTTGATGTATTCTAACACGTGGATTG
196 AGTTGATGAATTCTAACACGTGGATTG
74661486 T
1 T
74661487 TGCCTTTGTT
Statistics
Matches: 206, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
220 131 0.64
221 67 0.33
222 8 0.04
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.38
Consensus pattern (222 bp):
TATGTTATGTGTTTAGATAGCGAGTTAAGATTGTTAGCATGTAAAGCAGTCGATGAATTCTAGCA
CGTGGATTGTATGTTGTGTGTTTAGATAGCGCGTTAAGGTTGTTAGCATGTAAAGAAGTTGATGA
ATTCTAACATGTGGATAGCATGTTGTGTGTTTAGATAGCAAGTTAAGATTGTTAGCATGTAAAGC
AGTTGATGAATTCTAACACGTGGATTG
Found at i:74665189 original size:27 final size:27
Alignment explanation
Indices: 74665151--74665203 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
74665141 AAAAATGAGG
*
74665151 CCATTCAAAGAAGTAAGTAATCTTACA
1 CCATTCAAAGAAGTAAGAAATCTTACA
74665178 CCATTCAAAGAAGTAAGAAATCTTAC
1 CCATTCAAAGAAGTAAGAAATCTTAC
74665204 TCCCAGGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.45, C:0.19, G:0.11, T:0.25
Consensus pattern (27 bp):
CCATTCAAAGAAGTAAGAAATCTTACA
Found at i:74667515 original size:6 final size:6
Alignment explanation
Indices: 74667501--74667533 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
74667491 GGAATACACT
*
74667501 GTAATA GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTA
74667534 GCGGTACATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.48, C:0.12, G:0.18, T:0.21
Consensus pattern (6 bp):
GTAACA
Found at i:74673906 original size:55 final size:55
Alignment explanation
Indices: 74673839--74673965 Score: 130
Period size: 55 Copynumber: 2.3 Consensus size: 55
74673829 CGAGCCTGCC
* ** * *
74673839 AAAACAATACGGGCGTGCGACATGCCCGTGTGGAAGAACCGTAGG-AAAACCTGTT
1 AAAACAACACGGGCGTGCGACACACCCGGGTGGAACAACCGT-GGTAAAACCTGTT
* * * **
74673894 AAAACAACACGGGCATTCGACACACCCGGGTGGAACACCCGTGGTTGAACCTGTT
1 AAAACAACACGGGCGTGCGACACACCCGGGTGGAACAACCGTGGTAAAACCTGTT
**
74673949 AAATTAACACGGGCGTG
1 AAAACAACACGGGCGTG
74673966 GGGCTTGCAC
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
54 2 0.04
55 55 0.96
ACGTcount: A:0.31, C:0.24, G:0.28, T:0.17
Consensus pattern (55 bp):
AAAACAACACGGGCGTGCGACACACCCGGGTGGAACAACCGTGGTAAAACCTGTT
Found at i:74679841 original size:94 final size:95
Alignment explanation
Indices: 74679585--74679862 Score: 321
Period size: 94 Copynumber: 2.9 Consensus size: 95
74679575 GTCATAGTCA
** * * *
74679585 AGCTATGGTCTTACACATGTAACCTGATGTTTAATGTCCTAG-TGAACTACCCCATGTTTAATAT
1 AGCTATGGTCTTACACATGTAACCACATGTTTAATGTTCTAGCAG-ACTACCCCGTGTTTAATA-
** * * *
74679649 CC-CGACAGACTTTCTATGCTATCAT-AGTCG
64 CCTCGACAGACTTTCTATATTGTTATAACTCG
* * * *
74679679 AGTTATGGTATTACACTTGTAACCACATGTTTAATGTTCTAGCAGACTACCCCGTGTTTAATATC
1 AGCTATGGTCTTACACATGTAACCACATGTTTAATGTTCTAGCAGACTACCCCGTGTTTAATACC
74679744 TCGACAGACTTTCTATATTGTTATAACT-G
66 TCGACAGACTTTCTATATTGTTATAACTCG
* * * * *
74679773 AGCTATGGTCTTACACAGGTAACCCCATGTTTAATGTTTTAGCAGACTACCACGTGTTTAATGCC
1 AGCTATGGTCTTACACATGTAACCACATGTTTAATGTTCTAGCAGACTACCCCGTGTTTAATACC
* *
74679838 TCGACAAACTCTCTATATTGTTATA
66 TCGACAGACTTTCTATATTGTTATA
74679863 GTCGAGTCAA
Statistics
Matches: 156, Mismatches: 25, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
93 1 0.01
94 152 0.97
95 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (95 bp):
AGCTATGGTCTTACACATGTAACCACATGTTTAATGTTCTAGCAGACTACCCCGTGTTTAATACC
TCGACAGACTTTCTATATTGTTATAACTCG
Found at i:74679954 original size:13 final size:14
Alignment explanation
Indices: 74679931--74679959 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
74679921 ATCAAATATT
74679931 GAAACAATAAAGAA
1 GAAACAATAAAGAA
74679945 GAAA-AATAAAGAA
1 GAAACAATAAAGAA
74679958 GA
1 GA
74679960 TAGATGGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.72, C:0.03, G:0.17, T:0.07
Consensus pattern (14 bp):
GAAACAATAAAGAA
Found at i:74681818 original size:23 final size:23
Alignment explanation
Indices: 74681792--74681837 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
74681782 GATAGGCGGG
74681792 TGTTATAGGCGAAATGATAACTT
1 TGTTATAGGCGAAATGATAACTT
74681815 TGTTATAGGCGAAATGATAACTT
1 TGTTATAGGCGAAATGATAACTT
74681838 GCCATAACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (23 bp):
TGTTATAGGCGAAATGATAACTT
Found at i:74687902 original size:5 final size:6
Alignment explanation
Indices: 74687877--74687905 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
74687867 TTAATTTCTC
74687877 CATTTT CATTTT CATTTT CA-TTT CATTTT
1 CATTTT CATTTT CATTTT CATTTT CATTTT
74687906 GGAGAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.66
Consensus pattern (6 bp):
CATTTT
Found at i:74687902 original size:11 final size:12
Alignment explanation
Indices: 74687877--74687905 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
74687867 TTAATTTCTC
74687877 CATTTTCATTTT
1 CATTTTCATTTT
74687889 CATTTTCA-TTT
1 CATTTTCATTTT
74687900 CATTTT
1 CATTTT
74687906 GGAGAAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 9 0.53
12 8 0.47
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.66
Consensus pattern (12 bp):
CATTTTCATTTT
Found at i:74687961 original size:57 final size:58
Alignment explanation
Indices: 74687897--74688006 Score: 154
Period size: 57 Copynumber: 1.9 Consensus size: 58
74687887 TTCATTTTCA
*
74687897 TTTCATTTTGGAGAAAACTACAT-TCATTT-TAAA-ATAACTCCATTTCTCTATTATGTT
1 TTTCATTTTAGAGAAAACTA-ATATCATTTCTAAATATAAC-CCATTTCTCTATTATGTT
* *
74687954 TTTCATTTTAGAGAAAATTAATATCATTTCTAAATATTACCCATTTCTCTATT
1 TTTCATTTTAGAGAAAACTAATATCATTTCTAAATATAACCCATTTCTCTATT
74688007 TTCACCATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
56 2 0.04
57 24 0.51
58 17 0.36
59 4 0.09
ACGTcount: A:0.33, C:0.15, G:0.05, T:0.46
Consensus pattern (58 bp):
TTTCATTTTAGAGAAAACTAATATCATTTCTAAATATAACCCATTTCTCTATTATGTT
Found at i:74693662 original size:43 final size:43
Alignment explanation
Indices: 74693615--74693697 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
74693605 TCCAACACTA
* * * *
74693615 TGTGTGGCAATATAATTGCTTCAGCTTGCTCGATGATGCACCT
1 TGTGTGCCAATATAATTACTTCAGCTTACTCAATGATGCACCT
* *
74693658 TGTGTGCCATTATAATTACTTCGGCTTACTCAATGATGCA
1 TGTGTGCCAATATAATTACTTCAGCTTACTCAATGATGCA
74693698 TTATGTGGGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (43 bp):
TGTGTGCCAATATAATTACTTCAGCTTACTCAATGATGCACCT
Found at i:74708010 original size:34 final size:34
Alignment explanation
Indices: 74707972--74708039 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
74707962 CATTGCAGTT
* *
74707972 GTTTCTCTACTTTAA-TGCATATGTTGTGATTATG
1 GTTTCTCTACTTAAATTG-ATATCTTGTGATTATG
74708006 GTTTCTCTACTTAAATTGATATCTTGTGATTATG
1 GTTTCTCTACTTAAATTGATATCTTGTGATTATG
74708040 TTATATTTGT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 29 0.94
35 2 0.06
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.50
Consensus pattern (34 bp):
GTTTCTCTACTTAAATTGATATCTTGTGATTATG
Found at i:74709385 original size:16 final size:16
Alignment explanation
Indices: 74709364--74709450 Score: 129
Period size: 16 Copynumber: 5.4 Consensus size: 16
74709354 GTTTGTTTCA
*
74709364 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
74709380 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
* *
74709396 ATGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
*
74709412 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
74709428 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
74709444 CTGTAAT
1 CTGTAAT
74709451 CAGTAATTTA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 64 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:74709524 original size:44 final size:46
Alignment explanation
Indices: 74709432--74709524 Score: 129
Period size: 44 Copynumber: 2.1 Consensus size: 46
74709422 ATAGAACTGT
74709432 AATGGAATAGAGCTGTAATCAGTAATTTAACTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATTTAACTGTTTGGTTGAATGG
* **
74709478 AATGGAATAGAGTTGTAAT-AG-AATTCT-TGTGTTTGGTTGAATGG
1 AATGGAATAGAGCTGTAATCAGTAATT-TAACTGTTTGGTTGAATGG
74709522 AAT
1 AAT
74709525 AGATGTAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 22 0.51
45 3 0.07
46 18 0.42
ACGTcount: A:0.32, C:0.04, G:0.27, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAGCTGTAATCAGTAATTTAACTGTTTGGTTGAATGG
Found at i:74709706 original size:61 final size:57
Alignment explanation
Indices: 74709610--74709745 Score: 148
Period size: 61 Copynumber: 2.3 Consensus size: 57
74709600 TGTTATTAAG
* * * * *
74709610 TTTTAATAAAATTATTGTTAAATATATTTTAATAAAAATAAAAATAAATAATTTAATCATA
1 TTTTAATATAATTATTATTAAATAAATTTTAAT-AAAAT---AATAAATAATTTAATAACA
* *
74709671 TTTTAACATAATTATTATTAAATACAATTTT-ATAAAATAATATATAATTTAATAACA
1 TTTTAATATAATTATTATTAAATA-AATTTTAATAAAATAATAAATAATTTAATAACA
74709728 TTCTTAATATAATTATTA
1 TT-TTAATATAATTATTA
74709746 ATAATATTTA
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
57 18 0.28
58 14 0.22
60 5 0.08
61 23 0.35
62 5 0.08
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.45
Consensus pattern (57 bp):
TTTTAATATAATTATTATTAAATAAATTTTAATAAAATAATAAATAATTTAATAACA
Found at i:74709762 original size:13 final size:12
Alignment explanation
Indices: 74709708--74709770 Score: 55
Period size: 12 Copynumber: 5.4 Consensus size: 12
74709698 TTTTATAAAA
74709708 TAATATATAA-TT
1 TAATA-ATAATTT
*
74709720 TAATAA-CATTCT
1 TAATAATAATT-T
74709732 TAAT-ATAATTAT
1 TAATAATAATT-T
74709744 TAATAAT-A-TT
1 TAATAATAATTT
74709754 TAATAATAATTT
1 TAATAATAATTT
74709766 TAATA
1 TAATA
74709771 TAAAATTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
10 9 0.21
11 5 0.12
12 26 0.62
13 2 0.05
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATAATAATTT
Found at i:74717531 original size:508 final size:504
Alignment explanation
Indices: 74716580--74717596 Score: 1721
Period size: 508 Copynumber: 2.0 Consensus size: 504
74716570 AAGTCTTTAT
*
74716580 ACATGCCATACTCAAAATAGAAAAACTAACTATACCAAGTGCTACAATTGATAGTGTGAACGATG
1 ACATGCCATACTCAAAAAAGAAAAACTAACTATACCAAGTGCTACAATTGATAGTGTGAACGATG
** * *
74716645 CCTCCGATGTTCATTGATTCACGAGCTAATTAGGTGGCACTACAAGAAAATAGAAATGAGAAAAA
66 CCTCCGACATCCATTGATTCACGAGCTAATTAGGTGGCACTACAAGAAAATAGAAAGGAGAAAAA
*
74716710 AAGTAAACACAAAGCTTAGTAAGTTGCATGTAAATATATAACAACAATTTATCATACATTAATAT
131 AAGTAAACACAAAGCTTAGTAAGTTGCATGTAAATATATAACAACAATTTACCATACATTAATAT
*
74716775 ACTCATAACATATCGTAATTTGAACAAAATACATAAATAGTCGTAAGCATAACTTACTTATTTTC
196 ACTCATAACATATCGTAATTTGAACAAAATACATAAATAGTCGCAAGCATAACTTACTTATTTTC
74716840 ATTTCTAACTACTCTTACAATATAGATTGAGCTTGCATCTCATGAAATTCATGTGAATACCTGTA
261 ATTTCTAACTACTCTTACAATATAGATTGAGCTTGCATCTCATGAAATTCATGTGAATACCTGTA
* *
74716905 CCACTCATTGTATAGTCATAACCTCTCTTATTCCAACATAAACAATAAATTTTCCCGTTGAACCC
326 CCACTCATTGTATAGTAATAACCTCTCTTATTCCAAAATAAACAATAAATTTTCCCGTTGAACCC
74716970 TTTGGAATACTACCAGATATTCAATAAGCCTCAAACATAGGGTAAGATGCCGACGCCATGTCTCA
391 TTTGGAATACTACCAGATATTCAATAAGCCTCAAACATAGGGTAAGATGCCGACGCCATGTCTCA
*
74717035 GACATAGTCTTACACTCACTCATACATCAAAGTCGATGCCATGTCCCAG
456 GACATAGTCTTACACTCACTCATACATAAAAGTCGATGCCATGTCCCAG
74717084 ACATGCCATACTCAAAAAAGAAAAACTAACTATACCAAGTGCTACAATTGATAGTGTGAACGATG
1 ACATGCCATACTCAAAAAAGAAAAACTAACTATACCAAGTGCTACAATTGATAGTGTGAACGATG
* *
74717149 CCTCCGACATCCATTGATTCACGAGCTAATTAGGTGGCATTATAAGAAAATAGAAAGGAGAAAAA
66 CCTCCGACATCCATTGATTCACGAGCTAATTAGGTGGCACTACAAGAAAATAGAAAGGAG---AA
* *
74717214 GAAAAAGTAAGCACAAAGCTTAGTAAGTTGCATGTAAATATATAACAACAATTTACCATGCATTA
128 -AAAAAGTAAACACAAAGCTTAGTAAGTTGCATGTAAATATATAACAACAATTTACCATACATTA
* * *
74717279 ATATACTCATAACATATCGTAATTTGCACAAAATATATAAATAGTCGCAAGCATAACTTATTTAT
192 ATATACTCATAACATATCGTAATTTGAACAAAATACATAAATAGTCGCAAGCATAACTTACTTAT
* * *
74717344 TTTCATTTCTAGCTACTCTTACAATATAGATTGAGCTTGCATCTCATGAAATTCATTTGAATACT
257 TTTCATTTCTAACTACTCTTACAATATAGATTGAGCTTGCATCTCATGAAATTCATGTGAATACC
*
74717409 TGTACCACTCATTGTATAGTAATAACCTCTCTTATTCCAAAATAAACAGTAAATTTTCCCGTTGA
322 TGTACCACTCATTGTATAGTAATAACCTCTCTTATTCCAAAATAAACAATAAATTTTCCCGTTGA
*
74717474 ACCCTTTGGAATACTACC-GAATATTCAATAAGCCTTAAACATAGGGTAAGATGCCGACGCCATG
387 ACCCTTTGGAATACTACCAG-ATATTCAATAAGCCTCAAACATAGGGTAAGATGCCGACGCCATG
** * * ** *
74717538 TCTTGGATATGGTCTTACACTGGCTCATACATAAAAGTCGATGCTATGTCCCAG
451 TCTCAGACATAGTCTTACACTCACTCATACATAAAAGTCGATGCCATGTCCCAG
74717592 ACATG
1 ACATG
74717597 GTCTTACACT
Statistics
Matches: 479, Mismatches: 29, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
504 118 0.25
507 3 0.01
508 358 0.75
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (504 bp):
ACATGCCATACTCAAAAAAGAAAAACTAACTATACCAAGTGCTACAATTGATAGTGTGAACGATG
CCTCCGACATCCATTGATTCACGAGCTAATTAGGTGGCACTACAAGAAAATAGAAAGGAGAAAAA
AAGTAAACACAAAGCTTAGTAAGTTGCATGTAAATATATAACAACAATTTACCATACATTAATAT
ACTCATAACATATCGTAATTTGAACAAAATACATAAATAGTCGCAAGCATAACTTACTTATTTTC
ATTTCTAACTACTCTTACAATATAGATTGAGCTTGCATCTCATGAAATTCATGTGAATACCTGTA
CCACTCATTGTATAGTAATAACCTCTCTTATTCCAAAATAAACAATAAATTTTCCCGTTGAACCC
TTTGGAATACTACCAGATATTCAATAAGCCTCAAACATAGGGTAAGATGCCGACGCCATGTCTCA
GACATAGTCTTACACTCACTCATACATAAAAGTCGATGCCATGTCCCAG
Found at i:74717646 original size:50 final size:50
Alignment explanation
Indices: 74717546--74717855 Score: 326
Period size: 50 Copynumber: 6.3 Consensus size: 50
74717536 TGTCTTGGAT
* * * *
74717546 ATGGTCTTACACTGGCTCAT-ACATA--AAAGTCGATGCTATGTCCCAGAC
1 ATGGTCTTACACTGGCTC-TCACATATCGAGGCCGATGCCATGTCCCAGAC
* * * *
74717594 ATGGTCTTACACTGACTCTCACGTATCGAGGCTGATGCCATGTCCCAAAC
1 ATGGTCTTACACTGGCTCTCACATATCGAGGCCGATGCCATGTCCCAGAC
* * * * * *
74717644 ATGATCTTACACTGGCCCTCACGTATCAAGGTCGATGCCATGTCCCAGAT
1 ATGGTCTTACACTGGCTCTCACATATCGAGGCCGATGCCATGTCCCAGAC
* * *
74717694 ATGGTCTTACATTAGCTCTCACATATCGAGGCCGATGCCATGTCCCGGAC
1 ATGGTCTTACACTGGCTCTCACATATCGAGGCCGATGCCATGTCCCAGAC
* * *
74717744 ATGGTCTTACACTGGCTCTCGCATATTGCA-GCCGATGTCATGTCCCAGAC
1 ATGGTCTTACACTGGCTCTCACATATCG-AGGCCGATGCCATGTCCCAGAC
* ** * *
74717794 ATGGTCTTACA-AGGCTCTCATTTACCG-GTGCCGATGCCATGTCCTAGAC
1 ATGGTCTTACACTGGCTCTCACATATCGAG-GCCGATGCCATGTCCCAGAC
74717843 ATGGTCTTACACT
1 ATGGTCTTACACT
74717856 AGCACTCATA
Statistics
Matches: 215, Mismatches: 40, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
47 1 0.00
48 21 0.10
49 39 0.18
50 153 0.71
51 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
ATGGTCTTACACTGGCTCTCACATATCGAGGCCGATGCCATGTCCCAGAC
Done.