Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 238 of 325
Found at i:74723204 original size:3 final size:3
Alignment explanation
Indices: 74723196--74723227 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
74723186 TGAAATTAAA
74723196 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
74723228 ATACTCACCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:74724494 original size:14 final size:14
Alignment explanation
Indices: 74724475--74724502 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
74724465 CTCTTTCCAG
74724475 GCACTCTTTAGTTC
1 GCACTCTTTAGTTC
74724489 GCACTCTTTAGTTC
1 GCACTCTTTAGTTC
74724503 TTATCTACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.43
Consensus pattern (14 bp):
GCACTCTTTAGTTC
Found at i:74724601 original size:22 final size:22
Alignment explanation
Indices: 74724576--74724619 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
74724566 CATCTAGTAG
74724576 CTTTGATTTCATGAATGAGCAT
1 CTTTGATTTCATGAATGAGCAT
*
74724598 CTTTGATTTCATGAATTAGCAT
1 CTTTGATTTCATGAATGAGCAT
74724620 ACAAACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (22 bp):
CTTTGATTTCATGAATGAGCAT
Found at i:74737378 original size:39 final size:39
Alignment explanation
Indices: 74737330--74737445 Score: 126
Period size: 39 Copynumber: 3.0 Consensus size: 39
74737320 TATAAAGACG
* *
74737330 TTTTA-GAGTATTGTGGTATATGCTTGAATGTTATGTGA
1 TTTTATGAGTATTGTGATATATGCTTGAATGTTAAGTGA
* * * *
74737368 TTTTATGAGTATTGTGACATATGCTTAAACGTTAAGAGA
1 TTTTATGAGTATTGTGATATATGCTTGAATGTTAAGTGA
* * * * *
74737407 TTATATGAGTATGGTGATTTATGCTTGTATGTTAGGTGA
1 TTTTATGAGTATTGTGATATATGCTTGAATGTTAAGTGA
74737446 CTATATGTAA
Statistics
Matches: 62, Mismatches: 15, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
38 5 0.08
39 57 0.92
ACGTcount: A:0.27, C:0.04, G:0.25, T:0.44
Consensus pattern (39 bp):
TTTTATGAGTATTGTGATATATGCTTGAATGTTAAGTGA
Found at i:74741812 original size:24 final size:26
Alignment explanation
Indices: 74741783--74741833 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
74741773 ATTTCAGAAA
74741783 TAAATATT-ATAATTT-ATAAAAATT
1 TAAATATTAATAATTTGATAAAAATT
* *
74741807 TAAATATTAATTATTTGATTAAAATT
1 TAAATATTAATAATTTGATAAAAATT
74741833 T
1 T
74741834 TTTACCCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 8 0.35
25 6 0.26
26 9 0.39
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (26 bp):
TAAATATTAATAATTTGATAAAAATT
Found at i:74753600 original size:50 final size:50
Alignment explanation
Indices: 74753525--74753623 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
74753515 CTAATTGTCT
74753525 TAACAACCTTAACGAAAAAGTGAGGTAGGACATTAATTCAAGGGTTAATG
1 TAACAACCTTAACGAAAAAGTGAGGTAGGACATTAATTCAAGGGTTAATG
*
74753575 TAACAACCTTAACGAAAAAGTGAGGTGGGACATTAATTCAAGGGTTAAT
1 TAACAACCTTAACGAAAAAGTGAGGTAGGACATTAATTCAAGGGTTAAT
74753624 ATCCATTTTG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.41, C:0.12, G:0.22, T:0.24
Consensus pattern (50 bp):
TAACAACCTTAACGAAAAAGTGAGGTAGGACATTAATTCAAGGGTTAATG
Found at i:74753864 original size:62 final size:63
Alignment explanation
Indices: 74753791--74753912 Score: 160
Period size: 62 Copynumber: 2.0 Consensus size: 63
74753781 AAAAAGTAAA
* *
74753791 AAAAAATTCATAAA-ATTCT-AAACATTATATAATAAACAAAACACATACTTACA-ATTTTTTCT
1 AAAAAATTCATAAATA-TCTAAAAAAATA-ATAATAAACAAAACACATACTTACATATTTTTTCT
* * *
74753853 AAAAAATTCATAATTATGTAAAAAAATAATAATAAACAAAACACGTACTTACATATTTTT
1 AAAAAATTCATAAATATCTAAAAAAATAATAATAAACAAAACACATACTTACATATTTTT
74753913 ATAAATTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
62 39 0.75
63 13 0.25
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (63 bp):
AAAAAATTCATAAATATCTAAAAAAATAATAATAAACAAAACACATACTTACATATTTTTTCT
Found at i:74755442 original size:3 final size:3
Alignment explanation
Indices: 74755434--74755458 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
74755424 TCTTTTTTGT
74755434 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
74755459 ACCCGTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:74758154 original size:2 final size:2
Alignment explanation
Indices: 74758147--74758188 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
74758137 GCTATAAAGT
74758147 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74758189 ACTAATAGAC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:74758872 original size:4 final size:4
Alignment explanation
Indices: 74758863--74758910 Score: 96
Period size: 4 Copynumber: 12.0 Consensus size: 4
74758853 GTCCTTGAGG
74758863 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
74758911 AATGTCCAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.50
Consensus pattern (4 bp):
TATC
Found at i:74762572 original size:18 final size:20
Alignment explanation
Indices: 74762549--74762595 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
74762539 GTTAATATTG
74762549 ATTAAGATTAATTAA-T-TA
1 ATTAAGATTAATTAACTATA
*
74762567 ATTAAGGTTAATTAACTTATA
1 ATTAAGATTAATTAAC-TATA
74762588 ATTAAGAT
1 ATTAAGAT
74762596 ATAAAAGACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 14 0.58
20 1 0.04
21 9 0.38
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.43
Consensus pattern (20 bp):
ATTAAGATTAATTAACTATA
Found at i:74771024 original size:44 final size:46
Alignment explanation
Indices: 74770969--74771078 Score: 136
Period size: 46 Copynumber: 2.4 Consensus size: 46
74770959 CCATGTCCTG
74770969 GACATGGTCTTACACTAGCTTA-A-CTCGTA-GCCGATGCATCTCCCA
1 GACAT-GTCTTACACTAGCTTACATCTCG-AGGCCGATGCATCTCCCA
* * * * *
74771014 GACATGTCTTACACTGGCTTACATTTCGAGGCTGATGTATGTCCCA
1 GACATGTCTTACACTAGCTTACATCTCGAGGCCGATGCATCTCCCA
74771060 GACATGTCTTACACTAGCT
1 GACATGTCTTACACTAGCT
74771079 CTCGTCTTAC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
44 15 0.27
45 7 0.12
46 34 0.61
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (46 bp):
GACATGTCTTACACTAGCTTACATCTCGAGGCCGATGCATCTCCCA
Found at i:74775613 original size:93 final size:93
Alignment explanation
Indices: 74775500--74775671 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
74775490 CGCCCATAAG
* *
74775500 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74775565 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
74775593 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
74775658 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
74775672 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:74775668 original size:46 final size:46
Alignment explanation
Indices: 74775493--74775668 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
74775483 TGTAACCCGC
* * *
74775493 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
74775539 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
74775589 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
74775632 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
74775669 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:74780865 original size:46 final size:44
Alignment explanation
Indices: 74780767--74780885 Score: 141
Period size: 46 Copynumber: 2.6 Consensus size: 44
74780757 ATGCCAATGC
*
74780767 CATGTCCCAGACATGGTCTTACACTAGCTTAACTCGTAGCCGATG
1 CATGTCTCAGACAT-GTCTTACACTAGCTTAACTCGTAGCCGATG
* * *
74780812 CATGTCTCAGACATGTCTTGCAATAGCTTACATCTCG-AGGCTGATG
1 CATGTCTCAGACATGTCTTACACTAGCTTA-A-CTCGTA-GCCGATG
* *
74780858 CATGTCTCAAACATATCTTACACTAGCT
1 CATGTCTCAGACATGTCTTACACTAGCT
74780886 CTCGTCTCAC
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
44 14 0.22
45 15 0.24
46 34 0.54
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (44 bp):
CATGTCTCAGACATGTCTTACACTAGCTTAACTCGTAGCCGATG
Found at i:74780901 original size:46 final size:46
Alignment explanation
Indices: 74780808--74780980 Score: 145
Period size: 46 Copynumber: 3.7 Consensus size: 46
74780798 ACTCGTAGCC
* * * * *
74780808 GATGCATGTCTCAGACATGTCTTGCAATAGCT-TACATCTCGAGGCT
1 GATGCATGTCTCAAACATATCTTACACTAGCTCT-CGTCTCGAGGCT
*
74780854 GATGCATGTCTCAAACATATCTTACACTAGCTCTCGTCTC-ACTGCT
1 GATGCATGTCTCAAACATATCTTACACTAGCTCTCGTCTCGA-GGCT
* * * * * *
74780900 GATGCCATGTCCCGAATATAGTCTTACACTAGCTCTCGTAAT-GTGGCC
1 GATG-CATGTCTCAAACATA-TCTTACACTAGCTCTCGT-CTCGAGGCT
* * *
74780948 GATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GATGCATGTCTCAAACATATCTTACACTAGCTC
74780981 ACAATGGTTC
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 54 0.52
47 24 0.23
48 24 0.23
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
GATGCATGTCTCAAACATATCTTACACTAGCTCTCGTCTCGAGGCT
Found at i:74782909 original size:29 final size:29
Alignment explanation
Indices: 74782865--74782923 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
74782855 ATTCTATGCC
*
74782865 ATATTGGAGTCCATCTTTAACAAAGTTTT
1 ATATTAGAGTCCATCTTTAACAAAGTTTT
*
74782894 ATATTAGAGTCTATCTTTAACAAAGTTTT
1 ATATTAGAGTCCATCTTTAACAAAGTTTT
74782923 A
1 A
74782924 AGTCATAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.42
Consensus pattern (29 bp):
ATATTAGAGTCCATCTTTAACAAAGTTTT
Found at i:74785542 original size:19 final size:19
Alignment explanation
Indices: 74785504--74785543 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
74785494 AAAATGTCAT
*
74785504 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
74785523 ATTAA-TTTAATTTCACTTG
1 ATTAATTTTAATTT-ACTTG
74785542 AT
1 AT
74785544 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:74791122 original size:40 final size:40
Alignment explanation
Indices: 74791077--74791244 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74791067 CGGAATATAA
74791077 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74791117 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74791157 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
74791197 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74791237 CCGGATAT
1 CCGGATAT
74791245 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74794003 original size:24 final size:24
Alignment explanation
Indices: 74793954--74794008 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
74793944 ACCCTTGTAC
* *
74793954 TCATCTTCATCTCCACCATTGTCT
1 TCATCTTCATCTCCACCATCGGCT
* *
74793978 TCATCTTCATCTCTACTATCGGCT
1 TCATCTTCATCTCCACCATCGGCT
*
74794002 TCGTCTT
1 TCATCTT
74794009 TATCGCCTTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.15, C:0.35, G:0.07, T:0.44
Consensus pattern (24 bp):
TCATCTTCATCTCCACCATCGGCT
Found at i:74797478 original size:44 final size:44
Alignment explanation
Indices: 74797428--74797514 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
74797418 TTTCATTCAA
74797428 TCTTTAACCCTCTT-TCCACTATTTTTTGTGTATTTTCCAAGTTT
1 TCTTTAACCCT-TTGTCCACTATTTTTTGTGTATTTTCCAAGTTT
*
74797472 TCTTTAACCCTTTGTTCACTATTTTTTGTGTATTTTCCAAGTT
1 TCTTTAACCCTTTGTCCACTATTTTTTGTGTATTTTCCAAGTT
74797515 GGACTACTGC
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
43 2 0.05
44 39 0.95
ACGTcount: A:0.16, C:0.21, G:0.08, T:0.55
Consensus pattern (44 bp):
TCTTTAACCCTTTGTCCACTATTTTTTGTGTATTTTCCAAGTTT
Found at i:74801146 original size:44 final size:44
Alignment explanation
Indices: 74801096--74801183 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
74801086 TTTCATTCAA
*
74801096 TCTTTAACCCTCT-TTCCACTATTTTTGGTGTATTTTCCAAGTTG
1 TCTTTAACCCT-TATTCCACTATTTTTGGTGCATTTTCCAAGTTG
*
74801140 TCTTTAACCCTTATTCCACTATTTTTTGTGCATTTTCCAAGTTG
1 TCTTTAACCCTTATTCCACTATTTTTGGTGCATTTTCCAAGTTG
74801184 GACTACTGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
43 1 0.02
44 40 0.98
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (44 bp):
TCTTTAACCCTTATTCCACTATTTTTGGTGCATTTTCCAAGTTG
Found at i:74801639 original size:50 final size:50
Alignment explanation
Indices: 74801524--74801794 Score: 290
Period size: 50 Copynumber: 5.5 Consensus size: 50
74801514 GTAAGATACC
* * * * *
74801524 GATGCCATGTCCCGGACATGGTCTTACATTG-C-CTCACACATCAAGG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCT
74801571 CGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCT
1 -GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCT
* * * * * *
74801622 GATGCCATGTTCTAGACATGGTCTTACACTGGCTCTCATCTGTCG-GTGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAG-GCT
* * * *
74801672 GATGCCATGTCCCAGACATGGTCTTACACT-AGCTTTCATATCTTGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTCTCATATATCGAGGCT
* * *
74801722 GATGCCATGTCCTAGACATGGTCTTACACTGACTCTCATA-AT-GTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCT
74801770 GATG-CATGTCCCAGACAT-GTCTTAC
1 GATGCCATGTCCCAGACATGGTCTTAC
74801795 GCTACCACAC
Statistics
Matches: 191, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
46 7 0.04
47 13 0.07
48 38 0.20
49 3 0.02
50 127 0.66
51 3 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATATATCGAGGCT
Found at i:74803595 original size:9 final size:9
Alignment explanation
Indices: 74803556--74803598 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
74803546 CAAACAAAAG
*
74803556 TTGAGAAAA
1 TTGAGAGAA
74803565 TTGAGAGAA
1 TTGAGAGAA
*
74803574 TTGA-AGGAG
1 TTGAGA-GAA
74803583 TTGAGAGAA
1 TTGAGAGAA
74803592 TTGAGAG
1 TTGAGAG
74803599 TTTAAAGAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
8 1 0.03
9 27 0.93
10 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:74805805 original size:15 final size:15
Alignment explanation
Indices: 74805785--74805816 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
74805775 AAAACATTCC
*
74805785 TAGTTCGAATTTCAA
1 TAGTTCAAATTTCAA
74805800 TAGTTCAAATTTCAA
1 TAGTTCAAATTTCAA
74805815 TA
1 TA
74805817 TCTACAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (15 bp):
TAGTTCAAATTTCAA
Found at i:74818988 original size:70 final size:70
Alignment explanation
Indices: 74818870--74819652 Score: 667
Period size: 70 Copynumber: 11.1 Consensus size: 70
74818860 ATCATGATGT
* * *
74818870 GCCTTCAAATAGTTAGCGAGAGTTAAAAGCTCCCA-CTTGTAATTTCAAGGCTCGCTGATTTCAT
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGC-TGTAATTTCAAGGCTCGCTGATTTCAT
*
74818934 ATTGCG
65 ATCGCG
* * * * * * ** *
74818940 GCCTCCAAATAGTTACCAATAGTTAAAAGCTCACAGTTGTAATTTCAAGGCTCATTAATTTCATA
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCATA
74819005 TCGCG
66 TCGCG
* * * *
74819010 ACCTCCAAACAAAGGTTTAGCGATAGTTAAAAGCTCTCAACTATAATTTCAAGGCTCGCTGATTT
1 GCCTCCAAAC--A-G-TTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTT
74819075 CATATCGCG
62 CATATCGCG
* * * * * * * * * *
74819084 GCCTCTAGATAGTTAGCTAGAGTTAAAACCTCACAGTTGTAATTTCAAAGCTTGTTGATTTCATA
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCATA
* *
74819149 TTGTG
66 TCGCG
* * * * *
74819154 ACCTCCAAACAGTTAACGAGAGTTAAAAGCTCTCAACTATAATTTCAAGGCTTGCTGATTTCATA
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCATA
*
74819219 TCGTG
66 TCGCG
* * *
74819224 GCCTCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCTATAATTTCAAGGCTCACTGATTTCATA
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCATA
*
74819289 TCGCA
66 TCGCG
* * * * * * *
74819294 ACCTTCAAACAGTTAGCAAAAGTTAAAAGCT-TCTAGTTGTAACTTCAAGGCTCGCTAATTTCAT
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTC-AGCTGTAATTTCAAGGCTCGCTGATTTCAT
* *
74819358 ATTGTG
65 ATCGCG
* * * * * *
74819364 ACCTCCAAACAGTTAGCGAAAGCTAAATGCTC-CTAGCTGTAATTTCAAGACTCGTTGATTTCAT
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTC-AGCTGTAATTTCAAGGCTCGCTGATTTCAT
*
74819428 ATCG-A
65 ATCGCG
* * * * * * ** * *
74819433 GCCTCTAAACAGTTAGCAATAGTTAAAAGCTCTCGGTTGTAATTCCAACACTTGCTGATTTCATG
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCATA
* **
74819498 TTGAA
66 TCGCG
** * * ** * * * * *
74819503 ATCTCTAAACTA-CTAATGATAGTTAAAAGCTCCCAACTGTAATTGCAAAGCTCGCTGATTTCAT
1 GCCTCCAAAC-AGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCAT
*
74819567 ATCGTG
65 ATCGCG
* * * * * * *
74819573 GCCTCCAAACAGTTAGCGAGAATTAAAAGCTCCCACCTGTAATTTTAAGGCTTGTTGATTCCATA
1 GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCATA
*
74819638 TCGCA
66 TCGCG
74819643 GCCTCCAAAC
1 GCCTCCAAAC
74819653 GGCTCACGGA
Statistics
Matches: 570, Mismatches: 132, Indels: 22
0.79 0.18 0.03
Matches are distributed among these distances:
69 55 0.10
70 455 0.80
71 2 0.00
72 2 0.00
73 1 0.00
74 55 0.10
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (70 bp):
GCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTGTAATTTCAAGGCTCGCTGATTTCATA
TCGCG
Found at i:74819357 original size:210 final size:208
Alignment explanation
Indices: 74818880--74819652 Score: 789
Period size: 210 Copynumber: 3.7 Consensus size: 208
74818870 GCCTTCAAAT
* * * *
74818880 AGTTAGCGAGAGTTAAAAGCTCCCACTTGTAATTTCAAGGCTCGCTGATTTCATATTGCGGCCTC
1 AGTTAGC-AGAGTTAAAAGCTCCCAGTTGTAATTTCAAAGCTCGCTGATTTCATATTGTGACCTC
* * * * * * *
74818945 CAAATAGTTACCAATAGTTAAAAGCTCACAGTTGTAATTTCAAGGCTCATTAATTTCATATCGC-
65 CAAACAGTTAGCGAGAGTTAAAAGCTC-CAGCTGTAATTTCAAGGCTCGTTGATTTCATATCGCA
*
74819009 GACCTCCAAACAAAGGTTTAGCGATAGTTAAAAGCTCTCAACTATAATTTCAAGGCTCGCTGATT
129 G-CCTCCAAAC--A-G-TTAGCGATAGTTAAAAGCTCTCAGCTATAATTTCAAGGCTCGCTGATT
** * *
74819074 TCATATCGCGGCCTCTAGAT
189 TCATATCGCAACCTCTAAAC
* * * *
74819094 AGTTAGCTAGAGTTAAAACCTCACAGTTGTAATTTCAAAGCTTGTTGATTTCATATTGTGACCTC
1 AGTTAGC-AGAGTTAAAAGCTCCCAGTTGTAATTTCAAAGCTCGCTGATTTCATATTGTGACCTC
* * * * * **
74819159 CAAACAGTTAACGAGAGTTAAAAGCTCTCAACTATAATTTCAAGGCTTGCTGATTTCATATCGTG
65 CAAACAGTTAGCGAGAGTTAAAAGCTC-CAGCTGTAATTTCAAGGCTCGTTGATTTCATATCGCA
* * *
74819224 GCCTCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCTATAATTTCAAGGCTCACTGATTTCATA
129 GCCTCCAAACAGTTAGCGATAGTTAAAAGCTCTCAGCTATAATTTCAAGGCTCGCTGATTTCATA
74819289 TCGCAACCT-TCAAAC
194 TCGCAACCTCT-AAAC
* * * * * *
74819304 AGTTAGCAAAAGTTAAAAGCTTCTAGTTGTAACTTCAAGGCTCGCTAATTTCATATTGTGACCTC
1 AGTTAGC-AGAGTTAAAAGCTCCCAGTTGTAATTTCAAAGCTCGCTGATTTCATATTGTGACCTC
* * * *
74819369 CAAACAGTTAGCGAAAGCTAAATGCTCCTAGCTGTAATTTCAAGACTCGTTGATTTCATATCG-A
65 CAAACAGTTAGCGAGAGTTAAAAGCTCC-AGCTGTAATTTCAAGGCTCGTTGATTTCATATCGCA
* * * * * * ** * *
74819433 GCCTCTAAACAGTTAGCAATAGTTAAAAGCTCTCGGTTGTAATTCCAACACTTGCTGATTTCATG
129 GCCTCCAAACAGTTAGCGATAGTTAAAAGCTCTCAGCTATAATTTCAAGGCTCGCTGATTTCATA
* * *
74819498 TTGAAATCTCTAAAC
194 TCGCAACCTCTAAAC
* * * ** * * *
74819513 TACTAATG-ATAGTTAAAAGCTCCCAACTGTAATTGCAAAGCTCGCTGATTTCATATCGTGGCCT
1 -AGTTA-GCAGAGTTAAAAGCTCCCAGTTGTAATTTCAAAGCTCGCTGATTTCATATTGTGACCT
* * * * *
74819577 CCAAACAGTTAGCGAGAATTAAAAGCTCCCACCTGTAATTTTAAGGCTTGTTGATTCCATATCGC
64 CCAAACAGTTAGCGAGAGTTAAAAGCT-CCAGCTGTAATTTCAAGGCTCGTTGATTTCATATCGC
74819642 AGCCTCCAAAC
128 AGCCTCCAAAC
74819653 GGCTCACGGA
Statistics
Matches: 461, Mismatches: 90, Indels: 20
0.81 0.16 0.04
Matches are distributed among these distances:
209 161 0.35
210 180 0.39
211 2 0.00
212 1 0.00
214 116 0.25
215 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (208 bp):
AGTTAGCAGAGTTAAAAGCTCCCAGTTGTAATTTCAAAGCTCGCTGATTTCATATTGTGACCTCC
AAACAGTTAGCGAGAGTTAAAAGCTCCAGCTGTAATTTCAAGGCTCGTTGATTTCATATCGCAGC
CTCCAAACAGTTAGCGATAGTTAAAAGCTCTCAGCTATAATTTCAAGGCTCGCTGATTTCATATC
GCAACCTCTAAAC
Found at i:74819535 original size:139 final size:141
Alignment explanation
Indices: 74819225--74819604 Score: 346
Period size: 139 Copynumber: 2.7 Consensus size: 141
74819215 CATATCGTGG
* ** * * * *
74819225 CCTCCAAACAGTTAGTGAGAGTTAAAAGCT-CTCAGCTATAATTTCAAGGCTCACTGATTTCATA
1 CCTCCAAACAGCTAACGAAAGTTAAAAGCTCCT-AGCTGTAATTTCAAGACTCGCTGATTTCATA
* **
74819289 TCGCAACCT-TCAAACAGTTAGCAAAAGTTAAAAGCT-TCTAGTTGTAACTTCAAGGCTCGCTAA
65 TCGCAGCCTCT-AAACAGTTAGCAAAAGTTAAAAGCTCTCTAGTTGTAACTTCAACACTCGCTAA
**
74819352 TTTCATATTGTGA
129 TTTCATATTGAAA
* * * * *
74819365 CCTCCAAACAGTTAGCGAAAGCTAAATGCTCCTAGCTGTAATTTCAAGACTCGTTGATTTCATAT
1 CCTCCAAACAGCTAACGAAAGTTAAAAGCTCCTAGCTGTAATTTCAAGACTCGCTGATTTCATAT
* * * *
74819430 CG-AGCCTCTAAACAGTTAGCAATAGTTAAAAGCTCTC-GGTTGTAA-TTCCAACACTTGCTGAT
66 CGCAGCCTCTAAACAGTTAGCAAAAGTTAAAAGCTCTCTAGTTGTAACTT-CAACACTCGCTAAT
*
74819492 TTCATGTTGAAA
130 TTCATATTGAAA
* * * * * * *
74819504 TCTCTAAACTA-CTAATGATAGTTAAAAGCTCCCAACTGTAATTGCAA-AGCTCGCTGATTTCAT
1 CCTCCAAAC-AGCTAACGAAAGTTAAAAGCTCCTAGCTGTAATTTCAAGA-CTCGCTGATTTCAT
** * *
74819567 ATCGTGGCCTCCAAACAGTTAGCGAGAA-TTAAAAGCTC
64 ATCGCAGCCTCTAAACAGTTAGC-AAAAGTTAAAAGCTC
74819605 CCACCTGTAA
Statistics
Matches: 198, Mismatches: 34, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
138 3 0.02
139 105 0.53
140 86 0.43
141 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (141 bp):
CCTCCAAACAGCTAACGAAAGTTAAAAGCTCCTAGCTGTAATTTCAAGACTCGCTGATTTCATAT
CGCAGCCTCTAAACAGTTAGCAAAAGTTAAAAGCTCTCTAGTTGTAACTTCAACACTCGCTAATT
TCATATTGAAA
Found at i:74819879 original size:59 final size:58
Alignment explanation
Indices: 74819661--74820005 Score: 298
Period size: 58 Copynumber: 5.9 Consensus size: 58
74819651 ACGGCTCACG
* * * * * * * *
74819661 GATTTATATTCCCAACTAATTATTTTAGAGAATATGTTTAATTTTAGAACAACTTGTG
1 GATTTATATTCCCAACTAATTATTTTAGAAAATTTGCTTAAGTTCAAAACAGCTTGTA
* ** * * * * * * * * *
74819719 GATTTATATTTCCAGTTGATGATTTTGGAAAATTCGTTTAAGTTTAGAATAGCTCT-CA
1 GATTTATATTCCCAACTAATTATTTTAGAAAATTTGCTTAAGTTCAAAACAGCT-TGTA
** ** * * *
74819777 GATTTATATTCTTAGTTGATTATTTTAGAAAATATGCTTAAGTTCAAAACAGCTTGTG
1 GATTTATATTCCCAACTAATTATTTTAGAAAATTTGCTTAAGTTCAAAACAGCTTGTA
* * * *
74819835 GATTTATATTCCCAACTAATAATTTCTTGAAAATTTG-TTGAAGTTCATAACAGCTTGCA
1 GATTTATATTCCCAACTAATTATTT-TAGAAAATTTGCTT-AAGTTCAAAACAGCTTGTA
* * * *
74819894 GATTTATATTCCCAACTAATTATTTTAAAAAATATGCTTAAGTTCAAAACAACTCGTA
1 GATTTATATTCCCAACTAATTATTTTAGAAAATTTGCTTAAGTTCAAAACAGCTTGTA
* * * *
74819952 GATTTATATTCCTAACTGATTATTTTGGAAAATTTGCTTAAGTTTAAAACAGCT
1 GATTTATATTCCCAACTAATTATTTTAGAAAATTTGCTTAAGTTCAAAACAGCT
74820006 CGCAGACTCA
Statistics
Matches: 229, Mismatches: 53, Indels: 10
0.78 0.18 0.03
Matches are distributed among these distances:
57 1 0.00
58 176 0.77
59 52 0.23
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.41
Consensus pattern (58 bp):
GATTTATATTCCCAACTAATTATTTTAGAAAATTTGCTTAAGTTCAAAACAGCTTGTA
Found at i:74821645 original size:40 final size:41
Alignment explanation
Indices: 74821601--74821752 Score: 234
Period size: 41 Copynumber: 3.7 Consensus size: 41
74821591 ATCATACATG
* *
74821601 AGCGGCGTTTTTAGCAAAGTGCCGCT-AAAACCAGAGCAAT
1 AGCGGCGTTTTTGGCAAAGCGCCGCTAAAAACCAGAGCAAT
*
74821641 AGCGGCGTTTTTGTCAAAGCGCCGCTAAAAACCAGAGCAAT
1 AGCGGCGTTTTTGGCAAAGCGCCGCTAAAAACCAGAGCAAT
* *
74821682 AGCGGCGTTTTTGGCAAAGTGCCGCTAAAAACCAGAGTAAT
1 AGCGGCGTTTTTGGCAAAGCGCCGCTAAAAACCAGAGCAAT
* *
74821723 AGCGGCGTTTTTGGTAAAACGCCGCTAAAA
1 AGCGGCGTTTTTGGCAAAGCGCCGCTAAAA
74821753 GTCATATAAT
Statistics
Matches: 102, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
40 23 0.23
41 79 0.77
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.21
Consensus pattern (41 bp):
AGCGGCGTTTTTGGCAAAGCGCCGCTAAAAACCAGAGCAAT
Found at i:74822256 original size:19 final size:20
Alignment explanation
Indices: 74822209--74822256 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 20
74822199 ATATTAGATT
*
74822209 TAAA-AAAAACATTGATAAA
1 TAAATAAAAACATTAATAAA
74822228 TAAATAAAAACATTAAT-AA
1 TAAATAAAAACATTAATAAA
74822247 TAAATAAAAA
1 TAAATAAAAA
74822257 TGAAATATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (20 bp):
TAAATAAAAACATTAATAAA
Found at i:74822679 original size:7 final size:7
Alignment explanation
Indices: 74822667--74822693 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
74822657 TAACTTGGTA
74822667 TGGAGAG
1 TGGAGAG
74822674 TGGAGAG
1 TGGAGAG
74822681 TGGAGAG
1 TGGAGAG
74822688 TGGAGA
1 TGGAGA
74822694 ATCGGAGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.56, T:0.15
Consensus pattern (7 bp):
TGGAGAG
Found at i:74826795 original size:44 final size:44
Alignment explanation
Indices: 74826732--74826820 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
74826722 GCTATTACTT
74826732 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
74826776 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
1 TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
74826820 T
1 T
74826821 GATGCTATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.13, T:0.46
Consensus pattern (44 bp):
TCATTTAGGTGTCAACTTTATTTTAACAGATGTTATGCCTTATA
Found at i:74827560 original size:19 final size:21
Alignment explanation
Indices: 74827532--74827579 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
74827522 TTATTATTTA
74827532 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
74827552 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
74827572 TTTTAGTT
1 TTTTAGTT
74827580 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:74838201 original size:21 final size:22
Alignment explanation
Indices: 74838176--74838218 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
74838166 TATAAAAGAT
74838176 AAATAATTAAACT-TAATTATA
1 AAATAATTAAACTCTAATTATA
* *
74838197 AAATATTTTAACTCTAATTATA
1 AAATAATTAAACTCTAATTATA
74838219 TATATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (22 bp):
AAATAATTAAACTCTAATTATA
Found at i:74838540 original size:17 final size:17
Alignment explanation
Indices: 74838520--74838554 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
74838510 TAGAATTAGC
*
74838520 TTGAAAATTTTATTTAA
1 TTGAAAATTTAATTTAA
74838537 TTGAAAATTTAATTTAA
1 TTGAAAATTTAATTTAA
74838554 T
1 T
74838555 AAATAATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (17 bp):
TTGAAAATTTAATTTAA
Found at i:74841767 original size:2 final size:2
Alignment explanation
Indices: 74841762--74841786 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
74841752 GTTTAGGTTT
74841762 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
74841787 GATTATATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74842855 original size:39 final size:39
Alignment explanation
Indices: 74842801--74842979 Score: 254
Period size: 39 Copynumber: 4.5 Consensus size: 39
74842791 TAATGGAGAA
74842801 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
**
74842840 TTATATCCGGGCTAAGTCTTGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
74842879 TTATATCCGGGCTAAGAT-CCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAG-TCCCGAAGGCATTCGTGCTGGTG
* * *
74842918 TTATATCCGGGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
74842957 TTATATTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
74842980 CATGCTTTGT
Statistics
Matches: 128, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
39 107 0.84
40 21 0.16
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:74845514 original size:25 final size:25
Alignment explanation
Indices: 74845486--74845535 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
74845476 GCTTAAAATA
74845486 TAATATTTGTAATAAGTATCTAAAC
1 TAATATTTGTAATAAGTATCTAAAC
74845511 TAATATTTGTAATAAGTATCTAAAC
1 TAATATTTGTAATAAGTATCTAAAC
74845536 ATATACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (25 bp):
TAATATTTGTAATAAGTATCTAAAC
Found at i:74849883 original size:19 final size:22
Alignment explanation
Indices: 74849844--74849885 Score: 63
Period size: 19 Copynumber: 2.0 Consensus size: 22
74849834 TGTTAAAAAT
74849844 TTTTGAAGTTTTCATTGATGAA
1 TTTTGAAGTTTTCATTGATGAA
74849866 TTTTGAA-TTTT-A-TGATGAA
1 TTTTGAAGTTTTCATTGATGAA
74849885 T
1 T
74849886 ACCATGTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 8 0.40
20 1 0.05
21 4 0.20
22 7 0.35
ACGTcount: A:0.29, C:0.02, G:0.17, T:0.52
Consensus pattern (22 bp):
TTTTGAAGTTTTCATTGATGAA
Found at i:74852059 original size:40 final size:39
Alignment explanation
Indices: 74851935--74852075 Score: 119
Period size: 40 Copynumber: 3.6 Consensus size: 39
74851925 CGACTTCGAG
* *
74851935 TCGATGAGACACTAGATGTC-AATTTGCTACTTCGGATTAAT
1 TCGATGAGACACTGGGTGTCAAATTT--TACTTCGGATT-AT
* * * *
74851976 TCAATGAGGCACTGGGTG-CCAA-TTTACTTCGGTTTA-
1 TCGATGAGACACTGGGTGTCAAATTTTACTTCGGATTAT
* *
74852012 GCTGATGAGACACTGGGTGTCAAATTATTACTTCGAATTAT
1 TC-GATGAGACACTGGGTGTCAAATT-TTACTTCGGATTAT
* *
74852053 TCGATGAGGCACTGGGTGCCAAA
1 TCGATGAGACACTGGGTGTCAAA
74852076 CTGGTGTATT
Statistics
Matches: 80, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
36 1 0.01
37 15 0.19
38 13 0.16
39 1 0.01
40 33 0.41
41 17 0.21
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (39 bp):
TCGATGAGACACTGGGTGTCAAATTTTACTTCGGATTAT
Found at i:74863105 original size:71 final size:71
Alignment explanation
Indices: 74862989--74863133 Score: 290
Period size: 71 Copynumber: 2.0 Consensus size: 71
74862979 TTGGACCTCA
74862989 CAATCAAATTCCACTGATTTCCCAACAATCCAACAACCAATAGTTGACAAGTATAGGCAAATCAA
1 CAATCAAATTCCACTGATTTCCCAACAATCCAACAACCAATAGTTGACAAGTATAGGCAAATCAA
74863054 TTTGAT
66 TTTGAT
74863060 CAATCAAATTCCACTGATTTCCCAACAATCCAACAACCAATAGTTGACAAGTATAGGCAAATCAA
1 CAATCAAATTCCACTGATTTCCCAACAATCCAACAACCAATAGTTGACAAGTATAGGCAAATCAA
74863125 TTTGAT
66 TTTGAT
74863131 CAA
1 CAA
74863134 ATTCATCATC
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 74 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (71 bp):
CAATCAAATTCCACTGATTTCCCAACAATCCAACAACCAATAGTTGACAAGTATAGGCAAATCAA
TTTGAT
Found at i:74868052 original size:24 final size:26
Alignment explanation
Indices: 74868015--74868067 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
74868005 CTTTCAATCC
* *
74868015 TTTCAGTCTGTCGTTTGACAC-GGGT
1 TTTCAGTCTATCGTGTGACACGGGGT
74868040 TTTC-GTCTATCGTGTGACACGGGGT
1 TTTCAGTCTATCGTGTGACACGGGGT
74868065 TTT
1 TTT
74868068 GGTTTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.11, C:0.19, G:0.28, T:0.42
Consensus pattern (26 bp):
TTTCAGTCTATCGTGTGACACGGGGT
Found at i:74868180 original size:47 final size:47
Alignment explanation
Indices: 74868118--74868211 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 47
74868108 TTTTGTTTGG
*
74868118 CACGACCTGTTATTTCTTCTTATGCGCAATGGAGG-GAGAGTTGGCTA
1 CACGACCTGTTATTTCTTCTTATGCACAATGGAGGAG-GAGTTGGCTA
*
74868165 CACGGCCTGTTATTTCTTCTTATGCACAATGGAGGAGGAGTTGGCTA
1 CACGACCTGTTATTTCTTCTTATGCACAATGGAGGAGGAGTTGGCTA
74868212 ACTTGACCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
47 43 0.98
48 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.32
Consensus pattern (47 bp):
CACGACCTGTTATTTCTTCTTATGCACAATGGAGGAGGAGTTGGCTA
Found at i:74879448 original size:2 final size:2
Alignment explanation
Indices: 74879441--74879470 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
74879431 CTTATACTGG
*
74879441 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74879471 GATGTAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:74880738 original size:29 final size:29
Alignment explanation
Indices: 74880706--74880778 Score: 92
Period size: 30 Copynumber: 2.5 Consensus size: 29
74880696 TAAAAGTTAT
*
74880706 AAAAGTTATTAAATTTTAATAAAAATATA
1 AAAAATTATTAAATTTTAATAAAAATATA
* * *
74880735 AAAAAATATTTAAATTTTATTAAAAATTTA
1 AAAAATTA-TTAAATTTTAATAAAAATATA
*
74880765 AAAAATTATAAAAT
1 AAAAATTATTAAAT
74880779 ACATCAAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 11 0.30
30 26 0.70
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.38
Consensus pattern (29 bp):
AAAAATTATTAAATTTTAATAAAAATATA
Found at i:74880989 original size:10 final size:9
Alignment explanation
Indices: 74880954--74881094 Score: 52
Period size: 10 Copynumber: 14.4 Consensus size: 9
74880944 TATACGATAA
74880954 TTTTTATAT
1 TTTTTATAT
*
74880963 TTTTTTTAT
1 TTTTTATAT
*
74880972 GAATTTTATAT
1 --TTTTTATAT
*
74880983 TTCTTTACAT
1 TT-TTTATAT
74880993 TTTTTATAAT
1 TTTTTAT-AT
*
74881003 TTTCTTATGAA
1 TTT-TTAT-AT
* *
74881014 TTTATACAAT
1 TTTTTA-TAT
*
74881024 TTTCTA-ATT
1 TTTTTATA-T
*
74881033 TTTTTTTAT
1 TTTTTATAT
*
74881042 ATTTCTATAT
1 -TTTTTATAT
*
74881052 GTTTTATGA-
1 TTTTTAT-AT
74881061 TTTTTATAAT
1 TTTTTAT-AT
*
74881071 TTTTAAATAT
1 TTTT-TATAT
74881081 ATTTTTATAT
1 -TTTTTATAT
74881091 TTTT
1 TTTT
74881095 ATTAAAATTT
Statistics
Matches: 97, Mismatches: 22, Indels: 26
0.67 0.15 0.18
Matches are distributed among these distances:
8 1 0.01
9 35 0.36
10 40 0.41
11 21 0.22
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTTTATAT
Found at i:74881034 original size:39 final size:39
Alignment explanation
Indices: 74880954--74881036 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 39
74880944 TATACGATAA
* * * *
74880954 TTTTTATATTTTTTTTATGAATTTTATATTTCTTTACAT
1 TTTTTATAATTTTCTTATGAATTTTAAATTTCTCTACAT
74880993 TTTTTATAATTTTCTTATGAATTTATACAATTT-TCTA-AT
1 TTTTTATAATTTTCTTATGAATTT-TA-AATTTCTCTACAT
74881032 TTTTT
1 TTTTT
74881037 TTTATATTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
39 29 0.76
40 5 0.13
41 4 0.11
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.66
Consensus pattern (39 bp):
TTTTTATAATTTTCTTATGAATTTTAAATTTCTCTACAT
Found at i:74881089 original size:8 final size:8
Alignment explanation
Indices: 74881035--74881096 Score: 52
Period size: 8 Copynumber: 6.9 Consensus size: 8
74881025 TTCTAATTTT
74881035 TTTTTATA
1 TTTTTATA
*
74881043 TTTCTATA
1 TTTTTATA
74881051 TGTTTTATGA
1 T-TTTTAT-A
74881061 TTTTTATAA
1 TTTTTAT-A
74881070 TTTTTAAATATA
1 -TTTT---TATA
74881082 TTTTTATA
1 TTTTTATA
74881090 TTTTTAT
1 TTTTTAT
74881097 TAAAATTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
8 19 0.42
9 12 0.27
10 6 0.13
11 4 0.09
12 1 0.02
13 3 0.07
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.68
Consensus pattern (8 bp):
TTTTTATA
Found at i:74881108 original size:29 final size:30
Alignment explanation
Indices: 74881047--74881126 Score: 85
Period size: 29 Copynumber: 2.7 Consensus size: 30
74881037 TTTATATTTC
**
74881047 TATATGTTTTATGATTTTTA-TAATTTTTAAA
1 TATAT-TTTTAT-ATTTTTATTAAAATTTAAA
74881078 TATATTTTTATATTTTTATTAAAATTT-AA
1 TATATTTTTATATTTTTATTAAAATTTAAA
*
74881107 TA-ATTTTTAGTACTTTTATT
1 TATATTTTTA-TATTTTTATT
74881127 GGTTTCTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
28 7 0.16
29 20 0.45
30 12 0.27
31 5 0.11
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.62
Consensus pattern (30 bp):
TATATTTTTATATTTTTATTAAAATTTAAA
Found at i:74892446 original size:16 final size:16
Alignment explanation
Indices: 74892415--74892451 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
74892405 ATGGGAAGAA
74892415 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
74892431 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
74892447 TATTA
1 TATTA
74892452 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:74892488 original size:25 final size:27
Alignment explanation
Indices: 74892457--74892510 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
74892447 TATTAAAATA
74892457 AAATTAA-AATATTA-AATAATT-TATT
1 AAATTAATAA-ATTATAATAATTATATT
*
74892482 AAATTAATAAATTATATTAATTATATT
1 AAATTAATAAATTATAATAATTATATT
74892509 AA
1 AA
74892511 TAATTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 11 0.44
26 8 0.32
27 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
AAATTAATAAATTATAATAATTATATT
Found at i:74892501 original size:38 final size:37
Alignment explanation
Indices: 74892459--74892550 Score: 98
Period size: 38 Copynumber: 2.4 Consensus size: 37
74892449 TTAAAATAAA
*
74892459 ATTAAAATATTAAATAATTTATTAAATTAATAAATTAT
1 ATTAAAATATTAAATAATTTATTAAATGAATAAA-TAT
* * *
74892497 ATTAATTATATT-AATAATTTATTATATGACTAAATAT
1 ATTAA-AATATTAAATAATTTATTAAATGAATAAATAT
74892534 A-TATAAATAATTAAATA
1 ATTA-AAAT-ATTAAATA
74892551 TATATGTTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
36 4 0.09
37 8 0.18
38 28 0.62
39 5 0.11
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (37 bp):
ATTAAAATATTAAATAATTTATTAAATGAATAAATAT
Found at i:74892589 original size:22 final size:21
Alignment explanation
Indices: 74892564--74892606 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
74892554 ATGTTTAATA
74892564 ATATTAAAAAATATAATATTTT
1 ATATTAAAAAAT-TAATATTTT
* *
74892586 ATATTAATATATTAATATTTT
1 ATATTAAAAAATTAATATTTT
74892607 TAAATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATTAAAAAATTAATATTTT
Found at i:74898131 original size:43 final size:43
Alignment explanation
Indices: 74898077--74898360 Score: 311
Period size: 43 Copynumber: 6.6 Consensus size: 43
74898067 TTTTAGAAAA
* * **
74898077 AAACACCGCTAAAGATCATGACATTTAGCGGCGCTTTTTTTAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* * * *
74898120 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTT-ATAAA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCT-AC
* *
74898163 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCAAA
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* * ** * *
74898206 AAACGCCGCTAAAGGTCCTGGTCTTTAGCAGCGCTTTTCC-AT
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* * *
74898248 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCACTTTTCCTGC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* * * *
74898291 AAATGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTCTTGC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
* * *
74898334 AAACGCAGCTAAAAATCATGAACTTTA
1 AAACGCCGCTAAAGATCATGACCTTTA
74898361 AAAAAATTAT
Statistics
Matches: 206, Mismatches: 32, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
42 37 0.18
43 169 0.82
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTAC
Found at i:74898329 original size:85 final size:85
Alignment explanation
Indices: 74898074--74898329 Score: 307
Period size: 85 Copynumber: 3.0 Consensus size: 85
74898064 GTTTTTTAGA
* * ** * *
74898074 AAAAAACACCGCTAAAGATCATGACATTTAGCGGCGCTTTTTTTACAAACGCCGCTAAAGACCAA
1 AAAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGATCAT
* *
74898139 GACCTTTAGCGGCGCTTTTAT
66 GACCTTTAGCGACGCTTTT-C
* * * *
74898160 AAAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCAAAAAACGCCGCTAAAGGTCCT
1 AAAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGATCAT
**
74898225 GGTCTTTAGC-AGCGCTTTTC
66 GACCTTTAGCGA-CGCTTTTC
* * * * * *
74898245 CATAAACGCCGCTAAAGGTCATGACCTTTAGCGGCACTTTTCCTGCAAATGCCGCTAAAGATCAT
1 AAAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGATCAT
74898310 GACCTTTAGCGACGCTTTTC
66 GACCTTTAGCGACGCTTTTC
74898330 TTGCAAACGC
Statistics
Matches: 142, Mismatches: 26, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
85 71 0.50
86 71 0.50
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (85 bp):
AAAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGATCAT
GACCTTTAGCGACGCTTTTC
Found at i:74898360 original size:128 final size:128
Alignment explanation
Indices: 74898074--74898360 Score: 308
Period size: 128 Copynumber: 2.2 Consensus size: 128
74898064 GTTTTTTAGA
* * * **
74898074 AAAAAACACCGCTAAAGATCATGACATTTAGCGGCGCTTTTTTTACAAACGCCGCTAAAGACCAA
1 AAAAAACGCAGCTAAAGATCATGAC-TTTAGCAGCGCTTTTTCCACAAACGCCGCTAAAGACCAA
* *
74898139 GACCTTTAGCGGCGCTTTTATAAAAAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTTCC
65 GACCTTTAGCGGCACTTTTATAAAAAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTCC
* * * * * ** *
74898203 AAAAAACGCCGCTAAAGGTCCTGGTCTTTAGCAGCGC-TTTTCCATAAACGCCGCTAAAGGTCAT
1 AAAAAACGCAGCTAAAGATCAT-GACTTTAGCAGCGCTTTTTCCACAAACGCCGCTAAAGACCAA
* ** * *
74898267 GACCTTTAGCGGCACTTTTCCT-GCAAATGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTCT
65 GACCTTTAGCGGCACTTTT-ATAAAAAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTCC
*** *
74898331 TGCAAACGCAGCTAAAAATCATGAACTTTA
1 AAAAAACGCAGCTAAAGATCATG-ACTTTA
74898361 AAAAAATTAT
Statistics
Matches: 129, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
127 1 0.01
128 96 0.74
129 30 0.23
130 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (128 bp):
AAAAAACGCAGCTAAAGATCATGACTTTAGCAGCGCTTTTTCCACAAACGCCGCTAAAGACCAAG
ACCTTTAGCGGCACTTTTATAAAAAACGCCGCTAAAGATCATGACCTTTAGCGACGCTTTTCC
Found at i:74898409 original size:22 final size:23
Alignment explanation
Indices: 74898381--74898423 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
74898371 TTTATTTTAA
*
74898381 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
74898403 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
74898424 ATTTTTGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:74902189 original size:16 final size:16
Alignment explanation
Indices: 74902165--74902209 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
74902155 TAATTTTAAA
*
74902165 TTTATATTTATAATAT
1 TTTAAATTTATAATAT
* *
74902181 TTTAAATTTATATTTT
1 TTTAAATTTATAATAT
74902197 TTTAAATTTATAA
1 TTTAAATTTATAA
74902210 AAAAAAGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTAAATTTATAATAT
Found at i:74903559 original size:38 final size:38
Alignment explanation
Indices: 74903515--74903592 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
74903505 TCGATCATTT
74903515 GAAAGTGTCATCTAAAACCTGAATAAAAAATAATTGAG
1 GAAAGTGTCATCTAAAACCTGAATAAAAAATAATTGAG
74903553 GAAAGTGTCATCTAAAACCTGAATAAAAAATAATTGAG
1 GAAAGTGTCATCTAAAACCTGAATAAAAAATAATTGAG
74903591 GA
1 GA
74903593 TGACTCTGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.23
Consensus pattern (38 bp):
GAAAGTGTCATCTAAAACCTGAATAAAAAATAATTGAG
Found at i:74904305 original size:38 final size:39
Alignment explanation
Indices: 74904263--74904344 Score: 112
Period size: 38 Copynumber: 2.1 Consensus size: 39
74904253 TAAAAGTGTC
* * *
74904263 AATTATAAGGATAAATAATGATATTCTGTAGAAGAAT-A
1 AATTATAAGGATAAATAATGACATTATGTACAAGAATCA
* *
74904301 AATTATATGGCTAAATAATGACATTATGTACAAGAATCA
1 AATTATAAGGATAAATAATGACATTATGTACAAGAATCA
74904340 AATTA
1 AATTA
74904345 GATCAAATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
38 32 0.84
39 6 0.16
ACGTcount: A:0.49, C:0.06, G:0.13, T:0.32
Consensus pattern (39 bp):
AATTATAAGGATAAATAATGACATTATGTACAAGAATCA
Found at i:74904820 original size:19 final size:20
Alignment explanation
Indices: 74904796--74904833 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
74904786 ATATGATTTA
74904796 AAATAA-AAAAAAAAATTCT
1 AAATAACAAAAAAAAATTCT
*
74904815 AAATAACAATAAAAAATTC
1 AAATAACAAAAAAAAATTC
74904834 AAAAAGAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
AAATAACAAAAAAAAATTCT
Found at i:74905646 original size:39 final size:38
Alignment explanation
Indices: 74905587--74905682 Score: 120
Period size: 39 Copynumber: 2.5 Consensus size: 38
74905577 CAATTAATCG
* * * *
74905587 ATTATAATTACCATAATTATAATAATGTTTGACTGAAAA
1 ATTATAATTACAATAATTATAATAATATTCGA-TCAAAA
* * *
74905626 ATTACAATTACAATAGTTATAATAATATTCGATCATAA
1 ATTATAATTACAATAATTATAATAATATTCGATCAAAA
74905664 ATTATAATTACAATAATTA
1 ATTATAATTACAATAATTA
74905683 CAACAAGGAT
Statistics
Matches: 48, Mismatches: 9, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
38 21 0.44
39 27 0.56
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (38 bp):
ATTATAATTACAATAATTATAATAATATTCGATCAAAA
Found at i:74907140 original size:15 final size:15
Alignment explanation
Indices: 74907122--74907154 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
74907112 ACTCCATTTT
74907122 ATTTATATTAGGATA
1 ATTTATATTAGGATA
74907137 ATTTATATTAGGATA
1 ATTTATATTAGGATA
74907152 ATT
1 ATT
74907155 ATTAGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
ATTTATATTAGGATA
Found at i:74907200 original size:10 final size:10
Alignment explanation
Indices: 74907181--74907212 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
74907171 TTTTAGGATT
74907181 TTAT-TTTAA
1 TTATCTTTAA
74907190 TTATCTTTAA
1 TTATCTTTAA
74907200 TTATCTTTAA
1 TTATCTTTAA
74907210 TTA
1 TTA
74907213 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:74908111 original size:12 final size:13
Alignment explanation
Indices: 74908094--74908127 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
74908084 CCTACTTCCC
74908094 CTTTACTATT-AT
1 CTTTACTATTAAT
74908106 CTTTACTATTAAT
1 CTTTACTATTAAT
74908119 -TTTACTATT
1 CTTTACTATT
74908128 TTACAGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 19 0.90
13 2 0.10
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (13 bp):
CTTTACTATTAAT
Found at i:74908979 original size:72 final size:72
Alignment explanation
Indices: 74908900--74909132 Score: 243
Period size: 72 Copynumber: 3.2 Consensus size: 72
74908890 TCTACAACAA
* ** *
74908900 AAAATTATGCTAGCTGTGCAGTAGAAAATTATGTAAACTGTATAGCAGAAAATTATGCTAGCTGT
1 AAAATTATGCTAGCTGTACAACAGAAAATTATGTAAACTATATAGCAGAAAATTATGCTAGCTGT
* *
74908965 GGAGTAG
66 GCAGCAG
* * * * * * *
74908972 AAGATTATGCTAGCTCTACAACAAAAAAATATGCAAACTATACAACAGAAAATTATGCTAGCTGT
1 AAAATTATGCTAGCTGTACAACAGAAAATTATGTAAACTATATAGCAGAAAATTATGCTAGCTGT
74909037 GCAGCAG
66 GCAGCAG
* * * * * * * *
74909044 AAAATTATGCAAGCTATACAACAGAAAATTATGTTAGCTATGTAGTAGAAAATTAT-ATGAGCTA
1 AAAATTATGCTAGCTGTACAACAGAAAATTATGTAAACTATATAGCAGAAAATTATGCT-AGCTG
*
74909108 TACAGCAG
65 TGCAGCAG
*
74909116 AAAATTATGCTACCTGT
1 AAAATTATGCTAGCTGT
74909133 GCAGTAGAAA
Statistics
Matches: 129, Mismatches: 31, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
71 1 0.01
72 128 0.99
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (72 bp):
AAAATTATGCTAGCTGTACAACAGAAAATTATGTAAACTATATAGCAGAAAATTATGCTAGCTGT
GCAGCAG
Found at i:74909141 original size:24 final size:24
Alignment explanation
Indices: 74908852--74909147 Score: 193
Period size: 24 Copynumber: 12.3 Consensus size: 24
74908842 TATGTAGTAA
* **
74908852 AAAATTATGCTAGTTGTGTAGC-G
1 AAAATTATGCTAGCTGTACAGCAG
* * * * *
74908875 AAAAATTATGCAAACTCTACAACAA
1 -AAAATTATGCTAGCTGTACAGCAG
* *
74908900 AAAATTATGCTAGCTGTGCAGTAG
1 AAAATTATGCTAGCTGTACAGCAG
* *
74908924 AAAATTATG-TAAACTGTATAGCAG
1 AAAATTATGCT-AGCTGTACAGCAG
** *
74908948 AAAATTATGCTAGCTGTGGAGTAG
1 AAAATTATGCTAGCTGTACAGCAG
* * * *
74908972 AAGATTATGCTAGCTCTACAACAA
1 AAAATTATGCTAGCTGTACAGCAG
* * * * *
74908996 AAAAATATGCAAACTATACAACAG
1 AAAATTATGCTAGCTGTACAGCAG
*
74909020 AAAATTATGCTAGCTGTGCAGCAG
1 AAAATTATGCTAGCTGTACAGCAG
* * *
74909044 AAAATTATGCAAGCTATACAACAG
1 AAAATTATGCTAGCTGTACAGCAG
* * ** *
74909068 AAAATTATGTTAGCTATGTAGTAG
1 AAAATTATGCTAGCTGTACAGCAG
* *
74909092 AAAATTAT-ATGAGCTATACAGCAG
1 AAAATTATGCT-AGCTGTACAGCAG
* * *
74909116 AAAATTATGCTACCTGTGCAGTAG
1 AAAATTATGCTAGCTGTACAGCAG
*
74909140 AAATTTAT
1 AAAATTAT
74909148 ACGAACTATA
Statistics
Matches: 205, Mismatches: 62, Indels: 10
0.74 0.22 0.04
Matches are distributed among these distances:
23 2 0.01
24 201 0.98
25 2 0.01
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.27
Consensus pattern (24 bp):
AAAATTATGCTAGCTGTACAGCAG
Found at i:74909161 original size:24 final size:24
Alignment explanation
Indices: 74909087--74909179 Score: 78
Period size: 24 Copynumber: 3.8 Consensus size: 24
74909077 TTAGCTATGT
* *
74909087 AGTAGAAAATTATATGAGCTATAC
1 AGTAGAAAATTATACGAACTATAC
* * * * * *
74909111 AGCAGAAAATTATGCTACCTGTGC
1 AGTAGAAAATTATACGAACTATAC
*
74909135 AGTAGAAATTTATACGAACTATAC
1 AGTAGAAAATTATACGAACTATAC
* *
74909159 AGTAAAAAAATTATGCGAACT
1 AGT-AGAAAATTATACGAACT
74909180 GGTGAGCTGC
Statistics
Matches: 51, Mismatches: 17, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
24 37 0.73
25 14 0.27
ACGTcount: A:0.44, C:0.13, G:0.16, T:0.27
Consensus pattern (24 bp):
AGTAGAAAATTATACGAACTATAC
Found at i:74909575 original size:54 final size:52
Alignment explanation
Indices: 74909517--74909776 Score: 196
Period size: 54 Copynumber: 4.8 Consensus size: 52
74909507 GACAAACCCC
* * * * * *
74909517 AAGATTCTGAAAATCTTGTAAATGAGAGGTTGCGATCCTAAATTGATAAACTGT
1 AAGATTCTAAAAATCTTATAAGT-AGAGGTTGCGATCATAAATCGACAAA-TGT
* * *
74909571 AAGATTCTAAAAATCTTATAAGTAGGAGGTTGCAATCGTAAATCGACAAATTGC
1 AAGATTCTAAAAATCTTATAAGTA-GAGGTTGCGATCATAAATCGACAAA-TGT
* * * *
74909625 GAGATTTTAAAAATCTCATAAGTAAGAGGTTGCGATCATAAATCAACAAATAGT
1 AAGATTCTAAAAATCTTATAAGT-AGAGGTTGCGATCATAAATCGACAAAT-GT
* * * * * * *
74909679 GAGATTCTGAAAATCTCATAAGTAGGAGTTTGCCATCGTAAATCGACAAATCAT
1 AAGATTCTAAAAATCTTATAAGTA-GAGGTTGCGATCATAAATCGACAAAT-GT
* * * * ** *
74909733 GATATTCTGAAAATCTCATAAGTAAGAGGTCACGATCGTAAATC
1 AAGATTCTAAAAATCTTATAAGT-AGAGGTTGCGATCATAAATC
74909777 AATGAACCAT
Statistics
Matches: 172, Mismatches: 29, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
53 3 0.02
54 167 0.97
55 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (52 bp):
AAGATTCTAAAAATCTTATAAGTAGAGGTTGCGATCATAAATCGACAAATGT
Found at i:74909630 original size:108 final size:108
Alignment explanation
Indices: 74909504--74909778 Score: 300
Period size: 108 Copynumber: 2.5 Consensus size: 108
74909494 TCGATTGCAT
* * * ** * * ** *
74909504 ATCGACAAACCCCAAGATTCTGAAAATCTTGTAAATGAGAGGTTGCGATCCTAAATTGATAAACT
1 ATCGACAAATCACGAGATTCTGAAAATCTCATAAATAAGAGGTTGCGATCATAAATCAACAAA-T
*
74909569 -GTAAGATTCTAAAAATCTTATAAGTAGGAGGTTGCAATCGTAA
65 AGTAAGATTCTAAAAATCTCATAAGTAGGAGGTTGCAATCGTAA
** * * *
74909612 ATCGACAAATTGCGAGATTTTAAAAATCTCATAAGTAAGAGGTTGCGATCATAAATCAACAAATA
1 ATCGACAAATCACGAGATTCTGAAAATCTCATAAATAAGAGGTTGCGATCATAAATCAACAAATA
* * * *
74909677 GTGAGATTCTGAAAATCTCATAAGTAGGAGTTTGCCATCGTAA
66 GTAAGATTCTAAAAATCTCATAAGTAGGAGGTTGCAATCGTAA
* * * ** *
74909720 ATCGACAAATCATGATATTCTGAAAATCTCATAAGTAAGAGGTCACGATCGTAAATCAA
1 ATCGACAAATCACGAGATTCTGAAAATCTCATAAATAAGAGGTTGCGATCATAAATCAA
74909779 TGAACCATAA
Statistics
Matches: 138, Mismatches: 28, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
107 1 0.01
108 137 0.99
ACGTcount: A:0.40, C:0.15, G:0.18, T:0.27
Consensus pattern (108 bp):
ATCGACAAATCACGAGATTCTGAAAATCTCATAAATAAGAGGTTGCGATCATAAATCAACAAATA
GTAAGATTCTAAAAATCTCATAAGTAGGAGGTTGCAATCGTAA
Found at i:74909798 original size:54 final size:53
Alignment explanation
Indices: 74909520--74909830 Score: 187
Period size: 54 Copynumber: 5.8 Consensus size: 53
74909510 AAACCCCAAG
** * * * ** *
74909520 ATTCTGAAAATCTTGTAAATGAGAGGTTGCGATCCTAAATTGATAAAC-TGTAA
1 ATTCTGAAAATCTCATAAGTAAGAGGTTGCGATCGTAAATCAAAAAACATG-AA
* * * * * * * *
74909573 GATTCTAAAAATCTTATAAGTAGGAGGTTGCAATCGTAAATCGACAAA-TTGCGAG
1 -ATTCTGAAAATCTCATAAGTAAGAGGTTGCGATCGTAAATCAAAAAACAT--GAA
* * * * * *
74909628 ATTTTAAAAATCTCATAAGTAAGAGGTTGCGATCATAAATCAACAAATAGTGAG
1 ATTCTGAAAATCTCATAAGTAAGAGGTTGCGATCGTAAATCAAAAAACA-TGAA
* * * * * *
74909682 ATTCTGAAAATCTCATAAGTAGGAGTTTGCCATCGTAAATCGACAAATCATGAT
1 ATTCTGAAAATCTCATAAGTAAGAGGTTGCGATCGTAAATC-AAAAAACATGAA
** * * *
74909736 ATTCTGAAAATCTCATAAGTAAGAGGTCACGATCGTAAATCAATGAACCATAAA
1 ATTCTGAAAATCTCATAAGTAAGAGGTTGCGATCGTAAATCAA-AAAACATGAA
* ** **
74909790 ATTTTGAAAATCTTGTATA-TGGGAGGTTGCGATCGTAAATC
1 ATTCTGAAAATCTCATA-AGTAAGAGGTTGCGATCGTAAATC
74909831 CGTGAATCCA
Statistics
Matches: 204, Mismatches: 45, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
53 1 0.00
54 195 0.96
55 6 0.03
56 2 0.01
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.29
Consensus pattern (53 bp):
ATTCTGAAAATCTCATAAGTAAGAGGTTGCGATCGTAAATCAAAAAACATGAA
Found at i:74909798 original size:108 final size:108
Alignment explanation
Indices: 74909564--74909830 Score: 277
Period size: 108 Copynumber: 2.5 Consensus size: 108
74909554 CTAAATTGAT
* * * * **
74909564 AAACTGTAAGATTCTAAAAATCTTATAAGTAGGAGGTTGCAATCGTAAATCGACAAATTGCGAGA
1 AAACAGTAAAATTCTGAAAATCTCATAAGTAGGAGGTTGCAATCGTAAATCGACAAATCACGAGA
* **
74909629 TTTTAAAAATCTCATAAGTAAGAGGTTGCGATCATAAATCAAC
66 TTCTAAAAATCTCATAAGTAAGAGGTCACGATCATAAATCAAC
* * * * * * *
74909672 AAATAGTGAGATTCTGAAAATCTCATAAGTAGGAGTTTGCCATCGTAAATCGACAAATCATGATA
1 AAACAGTAAAATTCTGAAAATCTCATAAGTAGGAGGTTGCAATCGTAAATCGACAAATCACGAGA
* * *
74909737 TTCTGAAAATCTCATAAGTAAGAGGTCACGATCGTAAATCAATG
66 TTCTAAAAATCTCATAAGTAAGAGGTCACGATCATAAATCAA-C
* * ** * *
74909781 AACCA-TAAAATTTTGAAAATCTTGTATA-TGGGAGGTTGCGATCGTAAATC
1 AAACAGTAAAATTCTGAAAATCTCATA-AGTAGGAGGTTGCAATCGTAAATC
74909831 CGTGAATCCA
Statistics
Matches: 130, Mismatches: 27, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
108 126 0.97
109 4 0.03
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (108 bp):
AAACAGTAAAATTCTGAAAATCTCATAAGTAGGAGGTTGCAATCGTAAATCGACAAATCACGAGA
TTCTAAAAATCTCATAAGTAAGAGGTCACGATCATAAATCAAC
Found at i:74910007 original size:22 final size:22
Alignment explanation
Indices: 74909982--74910026 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
74909972 TTCAAGAAAC
74909982 TTAACTAACTGAAACTAAGGTA
1 TTAACTAACTGAAACTAAGGTA
74910004 TTAACTAACTGAAACTAAGGTA
1 TTAACTAACTGAAACTAAGGTA
74910026 T
1 T
74910027 ACTAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (22 bp):
TTAACTAACTGAAACTAAGGTA
Found at i:74917852 original size:21 final size:23
Alignment explanation
Indices: 74917828--74917878 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
74917818 GAATTTTTTA
*
74917828 AATTTTTAATAATATT-TTA-AT
1 AATTTTTAATAATATTAATATAT
* *
74917849 AATTTTTTATATTATTAATATAT
1 AATTTTTAATAATATTAATATAT
74917872 AATTTTT
1 AATTTTT
74917879 GTAATTTTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 14 0.56
22 2 0.08
23 9 0.36
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
AATTTTTAATAATATTAATATAT
Found at i:74917853 original size:30 final size:32
Alignment explanation
Indices: 74917819--74917886 Score: 86
Period size: 30 Copynumber: 2.2 Consensus size: 32
74917809 TATTATTATG
*
74917819 AATTTTTTAAATTTTTAATA-AT-ATTTTAAT
1 AATTTTTTAAATTATTAATATATAATTTTAAT
* **
74917849 AATTTTTTATATTATTAATATATAATTTTTGT
1 AATTTTTTAAATTATTAATATATAATTTTAAT
74917881 AATTTT
1 AATTTT
74917887 GTTATTTTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 18 0.56
31 2 0.06
32 12 0.38
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (32 bp):
AATTTTTTAAATTATTAATATATAATTTTAAT
Found at i:74928813 original size:40 final size:40
Alignment explanation
Indices: 74928739--74928892 Score: 157
Period size: 40 Copynumber: 3.9 Consensus size: 40
74928729 CCGCACCAAG
* * * * * * *
74928739 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCATAAAT
* *
74928779 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCATGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCATAAAT
** *
74928819 GCCTTCGGGTCTTAGCCCGGATATAATTACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCATAAAT
* * *
74928859 GTCC-TCGGGACTTAGCCCGGATATCACAATTTGC
1 G-CCTTCGGGTCTTAGCCCGGATATAACAACTTGC
74928893 TCATGCACAC
Statistics
Matches: 93, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
40 91 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACAACTTGCATAAAT
Found at i:74931198 original size:31 final size:30
Alignment explanation
Indices: 74931143--74931214 Score: 108
Period size: 31 Copynumber: 2.4 Consensus size: 30
74931133 TAATCACATT
* *
74931143 AATATTAAAATAAAAAATATTATCTAAATA
1 AATATTAAATTAAAAAATACTATCTAAATA
*
74931173 AATATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAA-AAAATACTATCTAAATA
74931204 AATATTAAATT
1 AATATTAAATT
74931215 TATTAAAACA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 12 0.32
31 26 0.68
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (30 bp):
AATATTAAATTAAAAAATACTATCTAAATA
Found at i:74931840 original size:21 final size:21
Alignment explanation
Indices: 74931814--74931858 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
74931804 ACGACCACCT
74931814 AATTTAATTCCATATCGAATA
1 AATTTAATTCCATATCGAATA
74931835 AATTTAATTCCATATCGAATA
1 AATTTAATTCCATATCGAATA
74931856 AAT
1 AAT
74931859 CGAGTCAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.44, C:0.13, G:0.04, T:0.38
Consensus pattern (21 bp):
AATTTAATTCCATATCGAATA
Found at i:74934554 original size:30 final size:30
Alignment explanation
Indices: 74934520--74934580 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
74934510 TCCTTAACTC
*
74934520 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
* * * *
74934550 AAACTTTTGCATATTTACACTTTTACCCCT
1 AAACTTTGGCAAAATTACAATTTTACCCCT
74934580 A
1 A
74934581 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTACCCCT
Found at i:74944193 original size:42 final size:42
Alignment explanation
Indices: 74944093--74944249 Score: 174
Period size: 43 Copynumber: 3.7 Consensus size: 42
74944083 TTCTGATATG
* * * * *
74944093 TGATTTCATGTAATACCAAGCCTGGGACGTCGGTATCG-ATT
1 TGATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATT
74944134 TGAGATTTACATGTAAGACCATGTCTGGGACATCGGCATCGTATT
1 T--GATTT-CATGTAAGACCATGTCTGGGACATCGGCATCGTATT
* *
74944179 TGATTTCATGTAAGACCCTATCTGGGACAGT-GGCATCGATATT
1 TGATTTCATGTAAGACCATGTCTGGGACA-TCGGCATCG-TATT
* *
74944222 TCATTACATGTAAGACCATGTCTGGGAC
1 TGATTTCATGTAAGACCATGTCTGGGAC
74944250 GTTGGCATTG
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
41 1 0.01
42 28 0.28
43 39 0.39
44 27 0.27
45 4 0.04
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (42 bp):
TGATTTCATGTAAGACCATGTCTGGGACATCGGCATCGTATT
Found at i:74945679 original size:26 final size:26
Alignment explanation
Indices: 74945650--74945759 Score: 177
Period size: 26 Copynumber: 4.2 Consensus size: 26
74945640 TGGTACAAAT
74945650 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
*
74945676 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
74945702 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
74945728 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
74945754 TGATAA
1 TGATAA
74945760 GAATTTCATG
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
26 78 0.98
27 2 0.03
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:74947244 original size:28 final size:26
Alignment explanation
Indices: 74947213--74947276 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
74947203 AATTACTACA
* *
74947213 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACCGTT
*
74947241 ATACCCCTAGGTGCAAAATTACCGTT
1 ATACCCCTAGATGCAAAATTACCGTT
74947267 ATACCCCTAG
1 ATACCCCTAG
74947277 GGTTAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 23 0.70
27 1 0.03
28 9 0.27
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCGTT
Found at i:74947482 original size:27 final size:26
Alignment explanation
Indices: 74947378--74947492 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
74947368 TAGAGGAAGC
* *
74947378 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
*
74947405 GATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTCTGCCACAT-TATCT
74947432 GTTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCAC-ATTATCT
* * *
74947459 GTATCTGGTGACTTTGTCACATTATCT
1 GT-TCTGGTGGCTCTGCCACATTATCT
74947486 GTTCTGG
1 GTTCTGG
74947493 CAGCCATGCT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 56 0.72
28 16 0.21
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACATTATCT
Found at i:74947485 original size:54 final size:54
Alignment explanation
Indices: 74947378--74947492 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
74947368 TAGAGGAAGC
*
74947378 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * * *
74947432 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTTTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
74947486 GTTCTGG
1 GTTCTGG
74947493 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 37 0.69
55 17 0.31
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:74955553 original size:39 final size:39
Alignment explanation
Indices: 74955506--74955688 Score: 231
Period size: 39 Copynumber: 4.6 Consensus size: 39
74955496 AATGTTCGAG
74955506 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
*
74955545 TGATATCCGGGCTAAGCCCGAAGGCAATTGGGCGAGTTA
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* * * *
74955584 TGATATCCGGGCTAAGCCCGAAGGCAATAGTGCAAATTG
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
* ** *
74955623 TGATATCCGGGTTAAGTCCCGAAGGCCTTTGTGCGGGTTA
1 TGATATCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA
** * *
74955663 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
74955689 GTTTGAACGA
Statistics
Matches: 124, Mismatches: 19, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 87 0.70
40 37 0.30
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (39 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTTA
Found at i:74958228 original size:43 final size:43
Alignment explanation
Indices: 74958077--74958249 Score: 158
Period size: 43 Copynumber: 4.0 Consensus size: 43
74958067 CATAGGATTT
* * * * *
74958077 TCGATATGTGATTTCGTGTAAGACCATGCCTGGGACATTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCA
* * *
74958120 TC-A-ATTTGAGATTTACGTGTAAGACGATGTCTGGGACA-TCGACA
1 TCGATATTT--GA-TTACATGTAAGACCATGTCTGGGACAGT-GGCA
* * *
74958164 TCG-TATTTGATTCCATTTAAGACCCTGTCTGGGACAGTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCA
*
74958206 TCGATATTTGATTACATGTAAGACCACGTCTGGGAC-GTTGGCA
1 TCGATATTTGATTACATGTAAGACCATGTCTGGGACAG-TGGCA
74958249 T
1 T
74958250 TGTACGAGCT
Statistics
Matches: 106, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
41 3 0.03
42 29 0.27
43 42 0.40
44 28 0.26
45 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCATGTCTGGGACAGTGGCA
Found at i:74963359 original size:32 final size:32
Alignment explanation
Indices: 74963313--74963377 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
74963303 TTTAAAGATG
*
74963313 TAATGTTTTGATGAAATGCATATGTGAACCAT
1 TAATGTTTTAATGAAATGCATATGTGAACCAT
74963345 TAATGTTTTAATGAAATGCATATGTGAACCAT
1 TAATGTTTTAATGAAATGCATATGTGAACCAT
74963377 T
1 T
74963378 CTTTTGTACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.38
Consensus pattern (32 bp):
TAATGTTTTAATGAAATGCATATGTGAACCAT
Found at i:74968832 original size:46 final size:47
Alignment explanation
Indices: 74968760--74969013 Score: 180
Period size: 46 Copynumber: 5.5 Consensus size: 47
74968750 TTATTTGTGT
* * *
74968760 GCTAATGTAAGA-CAAGTCCGGGACATGCATCGGCTACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACATTATGAGA
* *
74968806 GCTAGTGTAAGACCATGTCT-GGACATGGTAT---CTACATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTACATT---ATGAGA
* *
74968853 GCTAGTATAAGA-CATGTCTGGGACATGCATCGGCCT-CGA-GATGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGG-CTAC-ATTATG-AGA
* *
74968899 GCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACA--A-GA-T
1 GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACATTATGAGA
* * *
74968941 G-TAGTGTAAGACCATGTCTGGGACATGGTATCGAC-ACAGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTAC--AT-TATGAGA
*
74968990 GCTAGTGTAAGACCATGTTTGGGA
1 GCTAGTGTAAGACCATGTCTGGGA
74969014 TATGGCGTCA
Statistics
Matches: 167, Mismatches: 18, Indels: 42
0.74 0.08 0.19
Matches are distributed among these distances:
41 9 0.05
42 18 0.11
43 7 0.04
44 9 0.05
45 3 0.02
46 62 0.37
47 31 0.19
48 2 0.01
49 2 0.01
50 24 0.14
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACATTATGAGA
Found at i:74969028 original size:139 final size:138
Alignment explanation
Indices: 74968765--74969030 Score: 333
Period size: 139 Copynumber: 1.9 Consensus size: 138
74968755 TGTGTGCTAA
74968765 TGTAAGACAAGTCCGGGACATGCATCGGCTACATTATGAGAGCTAGTGTAAGACCATGTCTGGAC
1 TGTAAGACAAGTCCGGGACATGCATCGGCTACA-TATGAGAGCTAGTGTAAGACCATGTCTGGAC
* ** *
74968830 ATGGTATCTACATTGAGACGAGAGCTAGTATAAGACATGTCTGGGACATGCATCGGCCTCGAGAT
65 ATGGTATCGACACAGAGACGAGAGCTAGTATAAGACATGTCTGGGACATGCATCAGCCTCGAGAT
74968895 GTAAGCCAG
130 GTAAGCCAG
* * *
74968904 TGTAAGACATGTCTGGGACATGCATCGGCTACA-A-GA-TG-TAGTGTAAGACCATGTCTGGGAC
1 TGTAAGACAAGTCCGGGACATGCATCGGCTACATATGAGAGCTAGTGTAAGACCATGTCT-GGAC
* * * * * *
74968965 ATGGTATCGACACAGATATGTGAGAGCTAGTGTAAGACCATGTTTGGGATATGGCGTCAGCCTCG
65 ATGGTATCGACACAGAGA--CGAGAGCTAGTATAAGA-CATGTCTGGGACAT-GCATCAGCCTCG
74969030 A
126 A
74969031 TTTCGATAGT
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
134 18 0.17
135 19 0.17
136 2 0.02
137 16 0.15
138 12 0.11
139 42 0.39
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (138 bp):
TGTAAGACAAGTCCGGGACATGCATCGGCTACATATGAGAGCTAGTGTAAGACCATGTCTGGACA
TGGTATCGACACAGAGACGAGAGCTAGTATAAGACATGTCTGGGACATGCATCAGCCTCGAGATG
TAAGCCAG
Found at i:74969115 original size:47 final size:46
Alignment explanation
Indices: 74968804--74969118 Score: 145
Period size: 46 Copynumber: 6.8 Consensus size: 46
74968794 TACATTATGA
* * *
74968804 GAGCTAGTGTAAGACCATGTCT-GGACATGGTATCTACATTGAGACGA-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-A-ACT-AGAGGAT
* ** *
74968851 GAGCTAGTATAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-AACTAGAGGAT
* ** * *
74968895 GTAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGAT
1 G--AGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTAGAGGAT
*
74968941 --G-TAGTGTAAGACCATGTCTGGGACATGGTATCGACAC-AGATATGTGA-
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-A-ACTAG--A-G-GAT
* * * * * *
74968988 GAGCTAGTGTAAGACCATGTTTGGGATATGGCGTCAGCCTCGATTTCGAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCA-ACTAGA---GGAT
* * * * *
74969038 -AG-TCAGTGTAAGAACATGTTTGGTATATGGCATCAACTTGATGGAT
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCAACTAGA-GGAT
*
74969084 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
74969119 GGTATTATAC
Statistics
Matches: 208, Mismatches: 37, Indels: 46
0.71 0.13 0.16
Matches are distributed among these distances:
41 9 0.04
42 15 0.07
43 6 0.03
44 4 0.02
45 6 0.03
46 49 0.24
47 47 0.23
48 8 0.04
49 35 0.17
50 29 0.14
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.26
Consensus pattern (46 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACTAGAGGAT
Found at i:74973416 original size:14 final size:14
Alignment explanation
Indices: 74973378--74973421 Score: 56
Period size: 13 Copynumber: 3.2 Consensus size: 14
74973368 CAAAATGTAC
74973378 AATATAATTAAA-T
1 AATATAATTAAATT
74973391 AATATAAATTAAATT
1 AATAT-AATTAAATT
*
74973406 AA-ATAATTTAATT
1 AATATAATTAAATT
74973419 AAT
1 AAT
74973422 TGTTTACTCG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 15 0.56
14 9 0.33
15 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATAATTAAATT
Found at i:74975611 original size:68 final size:70
Alignment explanation
Indices: 74975539--74975735 Score: 276
Period size: 70 Copynumber: 2.8 Consensus size: 70
74975529 ACACCCTGTA
* * * *
74975539 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
74975601 ATAAAT
65 ATAAAT
*
74975607 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
74975672 ATAAAT
65 ATAAAT
* *
74975678 GTAGCT-GGTCGCATGCGTGATTCCAAGTGACGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGA-AGACACCATGTAGACAAGAGAGCTACG
74975736 AGACAAATCG
Statistics
Matches: 118, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
68 24 0.20
69 3 0.03
70 51 0.43
71 40 0.34
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:74975724 original size:70 final size:71
Alignment explanation
Indices: 74975573--74975735 Score: 310
Period size: 70 Copynumber: 2.3 Consensus size: 71
74975563 GAGATGTATC
74975573 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74975638 AGGACA
66 AGGACA
74975644 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCT-GGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
74975708 CGGACA
66 AGGACA
74975714 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74975736 AGACAAATCG
Statistics
Matches: 91, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
70 51 0.56
71 40 0.44
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74982717 original size:68 final size:70
Alignment explanation
Indices: 74982645--74982842 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
74982635 ACACCCTGTA
* * * *
74982645 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
74982707 ATAAAT
65 ATAAAT
*
74982713 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
74982778 ATAAAT
65 ATAAAT
*
74982784 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
74982843 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:74982756 original size:41 final size:41
Alignment explanation
Indices: 74982711--74982828 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
74982701 TGAAAGATAA
74982711 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
74982752 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74982782 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
74982823 ATGTAG
1 ATGTAG
74982829 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:74982768 original size:71 final size:71
Alignment explanation
Indices: 74982679--74982842 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
74982669 GAGATGTATC
74982679 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74982744 AGGACA
66 AGGACA
74982750 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
74982815 AGGACA
66 AGGACA
74982821 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
74982843 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:74988143 original size:40 final size:40
Alignment explanation
Indices: 74988098--74988264 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
74988088 CGGAATATAA
74988098 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
74988138 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
74988178 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
74988218 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
74988257 CCGGATAT
1 CCGGATAT
74988265 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:74996124 original size:31 final size:34
Alignment explanation
Indices: 74996088--74996208 Score: 95
Period size: 40 Copynumber: 3.3 Consensus size: 34
74996078 CGGAATATAA
74996088 CCGGATATAA-T-CAC-TGCCTTCGGGTCTTAGC
1 CCGGATATAACTCCACATGCCTTCGGGTCTTAGC
74996119 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGAT---ATAACTC-CAC--ATGCCTTCGGGTCTTAGC
* *
74996159 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA---ACT-CCAC-A-TGCCTTCGGGTCTTAGC
74996199 CCGGATATAA
1 CCGGATATAA
74996209 TTTCCAGCAT
Statistics
Matches: 74, Mismatches: 2, Indels: 22
0.76 0.02 0.22
Matches are distributed among these distances:
31 6 0.08
34 4 0.05
35 1 0.01
37 7 0.09
39 2 0.03
40 54 0.73
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (34 bp):
CCGGATATAACTCCACATGCCTTCGGGTCTTAGC
Found at i:74996146 original size:40 final size:40
Alignment explanation
Indices: 74996102--74996244 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
74996092 ATATAATCAC
* *
74996102 TGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAA-
1 TGCCTTCGGGTCTTAGCCCGGATAGAACAACTAGCAC-AAT
* * *
74996142 TGCCTTCGGGTCTTAGCCCGGATATAGCCACTAGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATAGAACAACTAGCACAAT
* * *** * *
74996182 TGCCTTCGGGTCTTAACCCGGATATAATTTCCAGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATAGAACAACTAGCACAAT
*
74996222 TGTCTTCGGG-CTTAGCCCGGATA
1 TGCCTTCGGGTCTTAGCCCGGATA
74996245 TCATTCAATT
Statistics
Matches: 88, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
39 14 0.16
40 74 0.84
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATAGAACAACTAGCACAAT
Found at i:75003320 original size:14 final size:14
Alignment explanation
Indices: 75003297--75003326 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75003287 TTGAAAATAT
75003297 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
75003311 GTTGATTTGGATTG
1 GTTGAATTGGATTG
75003325 GT
1 GT
75003327 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:75004144 original size:13 final size:13
Alignment explanation
Indices: 75004092--75004161 Score: 50
Period size: 13 Copynumber: 5.3 Consensus size: 13
75004082 TTGTACGTAT
*
75004092 ATTTCTATATGACC
1 ATTTC-ATATAACC
* * *
75004106 AGTTCATGTAAAC
1 ATTTCATATAACC
* *
75004119 ATTTCACACAACC
1 ATTTCATATAACC
**
75004132 ATTTTGTATAACC
1 ATTTCATATAACC
*
75004145 AATTCATATAACC
1 ATTTCATATAACC
75004158 ATTT
1 ATTT
75004162 GTCATCTAGT
Statistics
Matches: 39, Mismatches: 17, Indels: 1
0.68 0.30 0.02
Matches are distributed among these distances:
13 35 0.90
14 4 0.10
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.37
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:75004306 original size:46 final size:46
Alignment explanation
Indices: 75004244--75004513 Score: 353
Period size: 46 Copynumber: 5.9 Consensus size: 46
75004234 TTATCTTCGA
* * * *
75004244 CATGATGCCATAGTATCTTTCAACTATGGTCTTACTCGTTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTC-ATTTCATGT
*
75004290 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
75004336 TACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
75004382 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * * *
75004428 CAGGTTGCCATGATATCTTTTAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * *
75004474 TAGGTTGCCATGGTATCTTTCAACTATGGTCTTACACATT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATT
75004514 GGATTTCAGA
Statistics
Matches: 204, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 200 0.98
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:75005004 original size:23 final size:23
Alignment explanation
Indices: 75004973--75005024 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
75004963 AAGTTCAAGC
75004973 GAGCACTATCGGGAAGCTCACAAA
1 GAGC-CTATCGGGAAGCTCACAAA
* * *
75004997 GAGCCTATTGGGAAGCTCGCGAA
1 GAGCCTATCGGGAAGCTCACAAA
75005020 GAGCC
1 GAGCC
75005025 ATATATCGGG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.31, C:0.25, G:0.31, T:0.13
Consensus pattern (23 bp):
GAGCCTATCGGGAAGCTCACAAA
Found at i:75005040 original size:26 final size:25
Alignment explanation
Indices: 75004979--75005040 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 25
75004969 AAGCGAGCAC
75004979 TATCGGGAAGCTCACAAAGAGCCTA
1 TATCGGGAAGCTCACAAAGAGCCTA
* *
75005004 T-T-GGGAAGCTCGCGAAGAGCCATA
1 TATCGGGAAGCTCACAAAGAGCC-TA
*
75005028 TATCGGGACGCTC
1 TATCGGGAAGCTC
75005041 TTAAGAGCTA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 17 0.55
24 4 0.13
25 2 0.06
26 8 0.26
ACGTcount: A:0.29, C:0.24, G:0.29, T:0.18
Consensus pattern (25 bp):
TATCGGGAAGCTCACAAAGAGCCTA
Found at i:75007183 original size:18 final size:18
Alignment explanation
Indices: 75007135--75007183 Score: 53
Period size: 21 Copynumber: 2.5 Consensus size: 18
75007125 ATAATTTAAT
75007135 TATTTAATTAATAAATATC
1 TATTTAA-TAATAAATATC
*
75007154 TTTTATGAAATAATAAATATC
1 TATT-T--AATAATAAATATC
75007175 TATTTAATA
1 TATTTAATA
75007184 TCTAATACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
18 4 0.16
19 3 0.12
20 2 0.08
21 14 0.56
22 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (18 bp):
TATTTAATAATAAATATC
Found at i:75008093 original size:13 final size:13
Alignment explanation
Indices: 75008075--75008099 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75008065 GTAAGTGATC
75008075 TTGATGATTTTTT
1 TTGATGATTTTTT
75008088 TTGATGATTTTT
1 TTGATGATTTTT
75008100 GTACTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (13 bp):
TTGATGATTTTTT
Found at i:75008965 original size:46 final size:48
Alignment explanation
Indices: 75008815--75009075 Score: 220
Period size: 46 Copynumber: 5.5 Consensus size: 48
75008805 TGTACTAGTG
* * * *
75008815 TAAGA-CATGTCTGGGACATGTATCAGCCAC-ATTATG-AGAGCCAGCA
1 TAAGACCATGTCTGGGACATGCATCGGCCTCGA-TATGTAGAGCCAGTA
* * * * * *
75008861 TAAGACCATGTCTGGGACATGGCATCAGCATTGAGACG-AGAGCTAGTA
1 TAAGACCATGTCTGGGACAT-GCATCGGCCTCGATATGTAGAGCCAGTA
*
75008909 TAAGA-CATGTCTGGGACATGTATCGGCCTCGATATGTA-AGCCAGTA
1 TAAGACCATGTCTGGGACATGCATCGGCCTCGATATGTAGAGCCAGTA
* * * *
75008955 TAAGA-CATGTCTGGGACATGCATCGGCTTCGAGATGT---GTCAGTG
1 TAAGACCATGTCTGGGACATGCATCGGCCTCGATATGTAGAGCCAGTA
* * **
75008999 TAAGACCATGTCTGGGACATGGCATCGGCAC-AGATATGTGAGAGCTAGCG
1 TAAGACCATGTCTGGGACAT-GCATCGGC-CTCGATATGT-AGAGCCAGTA
75009049 TAAGACCATGTCTGGGACATGGCATCG
1 TAAGACCATGTCTGGGACAT-GCATCG
75009076 ACTTGATGGA
Statistics
Matches: 178, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
44 10 0.06
45 14 0.08
46 71 0.40
47 29 0.16
48 22 0.12
49 1 0.01
50 31 0.17
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGCATCGGCCTCGATATGTAGAGCCAGTA
Found at i:75010881 original size:25 final size:25
Alignment explanation
Indices: 75010847--75010895 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
75010837 ATAAACCTAG
*
75010847 ACCAATGCCTCAAGATTTATCGAAT
1 ACCAATGCCTCAAAATTTATCGAAT
75010872 ACCAATGCCTCAAAATTTATCGAA
1 ACCAATGCCTCAAAATTTATCGAA
75010896 CCATAATCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.27
Consensus pattern (25 bp):
ACCAATGCCTCAAAATTTATCGAAT
Found at i:75012748 original size:35 final size:35
Alignment explanation
Indices: 75012709--75012781 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
75012699 ACACATTCTT
75012709 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
75012744 TATTCTCGTCAGATCAATCTCACATAAATAATATA
1 TATTCTCGTCAGATCAATCTCACATAAATAATATA
75012779 TAT
1 TAT
75012782 ATCACATACC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.05, T:0.36
Consensus pattern (35 bp):
TATTCTCGTCAGATCAATCTCACATAAATAATATA
Found at i:75016853 original size:58 final size:58
Alignment explanation
Indices: 75016729--75016897 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
75016719 GTGCCCACTG
* *
75016729 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
75016786 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCACACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
75016844 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
75016898 TAATCATTCG
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 30 0.29
58 75 0.71
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:75016885 original size:29 final size:29
Alignment explanation
Indices: 75016736--75016894 Score: 112
Period size: 29 Copynumber: 5.5 Consensus size: 29
75016726 CTGACCGATC
* * *
75016736 TCGCACACATAGTGCTCGGTTGAA-GAAC
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
75016764 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
75016792 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
* ** **
75016822 TCACACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
75016850 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
75016880 TTGCACACACAGTGC
1 TCGCACACACAGTGC
75016895 CTCTAATCAT
Statistics
Matches: 98, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
28 27 0.28
29 62 0.63
30 9 0.09
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:75017161 original size:43 final size:43
Alignment explanation
Indices: 75017062--75017439 Score: 674
Period size: 43 Copynumber: 8.9 Consensus size: 43
75017052 TCACCGCATT
*
75017062 AAGCCTGCTA-GCACGAAGACCCGAATACACATCACCGG-ACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
75017103 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
75017146 AAGCCTGCTAGGCACGAAGGCCCGAATACATATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
75017189 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
75017232 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
75017275 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
75017318 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCA-CGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
*
75017360 AAGCCTGCTAGGCACGAAGGCCCCAATACACATCACCGGCACG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
75017403 AAGCCTGCTAGGCACGAAGGCCC-AATACACATCACCG
1 AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCG
75017440 AGTTTCATGC
Statistics
Matches: 329, Mismatches: 5, Indels: 5
0.97 0.01 0.01
Matches are distributed among these distances:
41 10 0.03
42 82 0.25
43 237 0.72
ACGTcount: A:0.31, C:0.34, G:0.25, T:0.11
Consensus pattern (43 bp):
AAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACG
Found at i:75022946 original size:58 final size:58
Alignment explanation
Indices: 75022822--75022990 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
75022812 GTGCCCACTG
* *
75022822 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
75022879 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCACACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
75022937 ACTGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACACACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
75022991 TAATCATTCG
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 30 0.29
58 75 0.71
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:75022978 original size:29 final size:29
Alignment explanation
Indices: 75022829--75022987 Score: 112
Period size: 29 Copynumber: 5.5 Consensus size: 29
75022819 CTGACCGATC
* * *
75022829 TCGCACACATAGTGCTCGGTTGAA-GAAC
1 TCGCACACACAGTGCTCGGTTAAAGGAAT
** **
75022857 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
75022885 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
* ** **
75022915 TCACACACACAGTGCCTCAATT-ACTG-AT
1 TCGCACACACAGTG-CTCGGTTAAAGGAAT
*
75022943 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACACAGTGCTCGGTTAAAGGAAT
*
75022973 TTGCACACACAGTGC
1 TCGCACACACAGTGC
75022988 CTCTAATCAT
Statistics
Matches: 98, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
28 27 0.28
29 62 0.63
30 9 0.09
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (29 bp):
TCGCACACACAGTGCTCGGTTAAAGGAAT
Found at i:75023205 original size:43 final size:43
Alignment explanation
Indices: 75023144--75023532 Score: 655
Period size: 43 Copynumber: 9.2 Consensus size: 43
75023134 CCTTGCTCGA
** *
75023144 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
75023187 ATCACCAGG-ACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACC-GGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
75023230 ATCACCGGCACGAAG-CTGCTAGGCACGAAGG-CCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
75023271 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
75023314 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
75023357 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
75023400 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
75023443 ATCA--GGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
75023484 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC-AATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
75023526 ATCACCG
1 ATCACCG
75023533 AGTTTCATGC
Statistics
Matches: 333, Mismatches: 7, Indels: 13
0.94 0.02 0.04
Matches are distributed among these distances:
41 64 0.19
42 48 0.14
43 219 0.66
44 2 0.01
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:75023370 original size:127 final size:127
Alignment explanation
Indices: 75023144--75023532 Score: 649
Period size: 127 Copynumber: 3.1 Consensus size: 127
75023134 CCTTGCTCGA
** *
75023144 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGG-ACGAAGCCTGCT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCA-C-GGCACGAAGCCTGCT
*
75023208 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAG-CTGCTAGGCACGAAGGCCGAATACAT
64 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCGAATACAC
75023271 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCA-CGGCACGAAGCCTGCTA
*
75023336 GGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
65 GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGG-CCGAATACAC
*
75023400 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCA-GGCACGAAGCCTGCTAG
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACGGCACGAAGCCTGCTAG
* *
75023464 GCACGAAGGCCCCAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAATACAC
66 GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCGAATACAC
75023526 ATCACCG
1 ATCACCG
75023533 AGTTTCATGC
Statistics
Matches: 248, Mismatches: 11, Indels: 7
0.93 0.04 0.03
Matches are distributed among these distances:
126 17 0.07
127 160 0.65
128 16 0.06
129 55 0.22
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.11
Consensus pattern (127 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACGGCACGAAGCCTGCTAG
GCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCGAATACAC
Found at i:75023453 original size:170 final size:169
Alignment explanation
Indices: 75023144--75023531 Score: 647
Period size: 170 Copynumber: 2.3 Consensus size: 169
75023134 CCTTGCTCGA
** *
75023144 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACACATCACCAGGACGAAGCCTGCTA
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGGACGAAGCCTGCTA
*
75023209 GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCTGCTAGGCACGAAGGCCGAATACATATC
66 GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCTGCTAGGCACGAAGGCCGAATACACATC
*
75023274 ACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
131 A-CGGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
* *
75023314 ATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCATC-GGCACGAAGCCTGCT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGG-ACGAAGCCTGCT
*
75023378 AGGCACGAAGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
65 AGGCACGAAGGCCCGAATACACATCACCGGCACGAAG-CTGCTAGGCACGAAGG-CCGAATACAC
75023443 ATCA-GGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
128 ATCACGGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
75023484 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCC-AATACACATCACC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACC
75023532 GAGTTTCATG
Statistics
Matches: 205, Mismatches: 10, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
169 14 0.07
170 162 0.79
171 16 0.08
172 13 0.06
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.11
Consensus pattern (169 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCAGGACGAAGCCTGCTA
GGCACGAAGGCCCGAATACACATCACCGGCACGAAGCTGCTAGGCACGAAGGCCGAATACACATC
ACGGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
Found at i:75036333 original size:19 final size:19
Alignment explanation
Indices: 75036309--75036358 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
75036299 GGTATAGAGC
75036309 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
75036328 ACACGCCCGTGTGCTAGGG
1 ACACGCCCGTGTGCTAGGG
75036347 ACACGCCCGTGT
1 ACACGCCCGTGT
75036359 CCCAAACCCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.16, C:0.34, G:0.34, T:0.16
Consensus pattern (19 bp):
ACACGCCCGTGTGCTAGGG
Found at i:75039567 original size:3 final size:3
Alignment explanation
Indices: 75039554--75039636 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
75039544 GAGGGCATAT
75039554 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
75039598 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
75039637 AACAAGCTCT
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 9 0.14
3 45 0.69
4 9 0.14
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Done.