Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 239 of 325
Found at i:75039578 original size:12 final size:12
Alignment explanation
Indices: 75039554--75039633 Score: 76
Period size: 12 Copynumber: 6.8 Consensus size: 12
75039544 GAGGGCATAT
75039554 ATAATAT-AATA
1 ATAATATAAATA
75039565 ATAATATAAATA
1 ATAATATAAATA
*
75039577 ATAATATATACATG
1 ATAATATA-A-ATA
*
75039591 AGAA-AT-AATA
1 ATAATATAAATA
75039601 ATAATATAAATA
1 ATAATATAAATA
* *
75039613 ATAGTAAAAATA
1 ATAATATAAATA
*
75039625 ATAAAATAA
1 ATAATATAA
75039634 TAAAACAAGC
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 32 0.58
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:75039991 original size:21 final size:22
Alignment explanation
Indices: 75039967--75040007 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
75039957 CCTTCTTTTC
75039967 CAAAAAAA-CACCTCCAAAAAA
1 CAAAAAAACCACCTCCAAAAAA
*
75039988 CAAAAAAACCTCCTCCAAAA
1 CAAAAAAACCACCTCCAAAA
75040008 CAAAGAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.61, C:0.32, G:0.00, T:0.07
Consensus pattern (22 bp):
CAAAAAAACCACCTCCAAAAAA
Found at i:75040007 original size:20 final size:22
Alignment explanation
Indices: 75039984--75040029 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
75039974 ACACCTCCAA
75039984 AAAACAAA-AA-AA-CCTCCTCC
1 AAAACAAAGAACAATCCT-CTCC
75040004 AAAACAAAGAACAATCCTCTCC
1 AAAACAAAGAACAATCCTCTCC
75040026 AAAA
1 AAAA
75040030 AACCAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 8 0.35
21 2 0.09
22 10 0.43
23 3 0.13
ACGTcount: A:0.57, C:0.30, G:0.02, T:0.11
Consensus pattern (22 bp):
AAAACAAAGAACAATCCTCTCC
Found at i:75040587 original size:44 final size:44
Alignment explanation
Indices: 75040485--75041052 Score: 481
Period size: 44 Copynumber: 13.0 Consensus size: 44
75040475 TGTTTTCAAC
* *
75040485 TTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGAT
1 TTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATCTTCGAT
* * * * * * *
75040528 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
1 TTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
* * * * *
75040573 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAAC
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
* * *
75040617 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGT-TTCAAC
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
* *
75040660 TTGTTCCCTATAAGCACAGGGATGCC--ATGCT-AAATCTTTGAT
1 TTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATCTTCGAT
* * * * * * * *
75040702 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGTTATCTTTGAT
1 TTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
* * * *
75040747 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAAC
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
* * * *
75040791 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATGTTTTCAAC
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
* *
75040835 TTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTTGAT
1 TTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATCTTCGAT
* * * * * * *
75040878 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCGAT
1 TTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
* * * * *
75040923 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAAC
1 TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
*
75040967 TTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGAT
1 TTGTTCCCTATAAGCACAGGGATGCCAAAT-CTGATATCTTCGAT
* * * * * * *
75041010 CTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATCTTCG
1 TTG-TTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCG
75041053 GTCTGCTCTC
Statistics
Matches: 428, Mismatches: 80, Indels: 32
0.79 0.15 0.06
Matches are distributed among these distances:
41 4 0.01
42 11 0.03
43 73 0.17
44 285 0.67
45 49 0.11
46 6 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.32
Consensus pattern (44 bp):
TTGTTCCCTATAAGCACAGGGATGCCAAATCTGATATCTTCGAT
Found at i:75041188 original size:68 final size:68
Alignment explanation
Indices: 75041104--75041302 Score: 296
Period size: 68 Copynumber: 2.9 Consensus size: 68
75041094 TCTTCTTCCA
* * * *
75041104 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCTCTCCAATGCCATTTCTGGAAGAAGAGGT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
*
75041169 -TT
66 CCT
*
75041171 GCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCC-ATCGCCATTTCAGGAAGAAAAG
1 -CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAAT-GCCATTTCAGGAAGAAAAG
75041235 ATCCT
64 ATCCT
*
75041240 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGGA-AAAAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGA
75041303 AATTTGTAAT
Statistics
Matches: 120, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
67 8 0.07
68 109 0.91
69 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTCAGGAAGAAAAGAT
CCT
Found at i:75041430 original size:42 final size:42
Alignment explanation
Indices: 75041374--75042212 Score: 466
Period size: 42 Copynumber: 19.4 Consensus size: 42
75041364 CTATTTCCCA
**
75041374 ACTGCTTAAGGGGTTAAGATCTGTAAATTCAACCTGTTACCCT
1 ACTGCTT-AGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * *
75041417 ACTGGTTAGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTAGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * * *
75041461 ACTGCTTAGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
* ** * * **** *
75041503 ACTGCTTAGGGGTTAA-AGCCCATCATTTTTATCTGTTTCCCT
1 ACTGCTTAGGGGTTAAGA-TCTGTAAATTCGGCCTGTTACCCT
* *
75041545 ACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCT
1 ACTGCTTAGGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* *
75041589 ACTGCTTAGGGGTTTAAG-GCTTGTAAATTCGGCTTGTTACCCT
1 ACTGCTTAGGGG-TTAAGATC-TGTAAATTCGGCCTGTTACCCT
* ** * * **** *
75041632 ACTGCTTAGGGGGTTAA-ACCCATCATTTTTATCTGTTTCCCT
1 ACTGCTTA-GGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
*
75041674 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTA-GGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
75041719 ACTGCTTAGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
** * ** ** *
75041761 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCT
1 ACTGCTTA-GGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
* * *
75041805 ACTGCTTAGGGAGATAAGATCTG-CAATTCGGTCTGTTACCCT
1 ACTGCTTAGGG-GTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * * * ** *
75041847 ACCGATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCT
1 ACTGCTTAGGGG-TTAAGA-TC-T-GTAAATTCGGCCTGTTACCCT
*
75041891 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTA-GGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
* * *
75041936 ACTGCTTAGGGGTTAAG-GCTTGTAAATTTGGCTTGTTACCCT
1 ACTGCTTAGGGGTTAAGATC-TGTAAATTCGGCCTGTTACCCT
** * ** ** *
75041978 ACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCT
1 ACTGCTTA-GGGGTT-AAGATC-TGTAAATTCGGCCTGTTACCCT
** ** *
75042022 ACTGCTTAGGGGGTTAAGATCT-TCATCTTCGATCTGTTTCCCT
1 ACTGCTTA-GGGGTTAAGATCTGT-AAATTCGGCCTGTTACCCT
* * * *
75042065 ACTGCTTAGGGAGATGAGATCTG-CAATTCGGTCTGTTACCCT
1 ACTGCTTAGGG-GTTAAGATCTGTAAATTCGGCCTGTTACCCT
* * * ** *
75042107 AC-GATTAGGGGTTTAAGACCCTTCGT--CTTCGATCTGTTTCCCT
1 ACTGCTTAGGGG-TTAAGA-TC-T-GTAAATTCGGCCTGTTACCCT
*
75042150 ACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCT
1 ACTGCTTA-GGGGTTAAGATCTGTAAA--TTCGGCCTGTTACCCT
*
75042195 ATTGCTTAGGGGCTTAAG
1 ACTGCTTAGGGG-TTAAG
75042213 GCTTGTGAAT
Statistics
Matches: 614, Mismatches: 134, Indels: 94
0.73 0.16 0.11
Matches are distributed among these distances:
40 1 0.00
41 16 0.03
42 201 0.33
43 117 0.19
44 192 0.31
45 87 0.14
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (42 bp):
ACTGCTTAGGGGTTAAGATCTGTAAATTCGGCCTGTTACCCT
Found at i:75041665 original size:129 final size:130
Alignment explanation
Indices: 75041407--75042123 Score: 718
Period size: 129 Copynumber: 5.6 Consensus size: 130
75041397 TAAATTCAAC
* * *
75041407 CTGTTACCCTACTGGTTAGGGGTTAAGATTTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-GG
1 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
*
75041471 GTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCATTTTTAT
66 GTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTAT
*
75041535 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCAGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
75041600 GTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAA-CCCATCATTTTTAT
66 GTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTAT
75041664 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTA-GGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* **
75041729 GG-TTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCG
65 GGTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCAT-TTTT
75041793 AT
129 AT
* * * * * *
75041795 CTGTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAA--TTCGGTCTGTTACCCTACCGATTAGG
1 CTGTTTCCCTACTGCTTAGGG-GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * * * * ** *
75041857 GGTTTAAGACCCTTCGT--CTTC-GATCTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAA
65 GGTTTAAG--GCTT-GTAAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CA
* * *
75041918 TCTTCAGC
124 TTTTTA-T
* * * *
75041926 CTGTTACCCTACTGCTTAGGGGTTAAG-GCTTGTAAAT-TT-GGCTTGTTACCCTACTGCTTAGG
1 CTGTTTCCCTACTGCTTAGGGGTTAAGATC-TGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
* * *** ** * * ** *
75041988 GGGTTAAAGCCCATCATCTTC-GATCTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTT
65 GGTTTAAGGCTTGT-AAATTCGGCT-TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCAT-TT
**
75042051 CGAT
127 TTAT
* * * * * *
75042055 CTGTTTCCCTACTGCTTAGGGAGATGAGATCTG-CAA--TTCGGTCTGTTACCCTAC-GATTAGG
1 CTGTTTCCCTACTGCTTAGGG-GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
75042116 GGTTTAAG
65 GGTTTAAG
75042124 ACCCTTCGTC
Statistics
Matches: 504, Mismatches: 61, Indels: 48
0.82 0.10 0.08
Matches are distributed among these distances:
128 97 0.19
129 169 0.34
130 114 0.23
131 120 0.24
132 4 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (130 bp):
CTGTTTCCCTACTGCTTAGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGG
GTTTAAGGCTTGTAAATTCGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATTTTTAT
Found at i:75041813 original size:86 final size:86
Alignment explanation
Indices: 75041321--75042211 Score: 545
Period size: 86 Copynumber: 10.3 Consensus size: 86
75041311 ATTTCCAGCC
* * * * * *
75041321 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCGTCATCTTCGATCTGTTTCCCTACTGCTT-AGGG
* * *
75041386 GTTAAGATCTGTAAATTCAACC
65 GTTAAGATCTGTAAATTTAGCT
* *** * * *
75041408 TGTTACCCTACTGGTTA-GGGGTT-AAGATTTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAG
1 TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCGT-CATCTTCGA-TCTGTTTCCCTACTGCTTAG
* * * **
75041470 GGTTTAAGGTTTGTAAATTCGGCT
63 GGGTTAAGATCTGTAAATTTAGCT
* **
75041494 TGTTACCCTACTGCTTA-GGGGTTAAAGCCCATCAT-TTTTATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCGTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
*
75041557 TTAAGATCTGTAAATCTTCAGCC
66 TTAAGATCTGTAAAT-TT-AGCT
* * * ** ** * *
75041580 AGTTACCCTACTGCTTAGGGGTTTAAGGCTTGT-AAATTCG-GCTTGTTACCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCGTCATCTTCGATC-TGTTTCCCTACTGCTTA-GG
* ** ** *
75041643 GGTTAA-ACCCATCATTTTTATC-
64 GGTTAAGATCTGT-AAATTTAGCT
* * * * * *
75041665 TGTTTCCCTACTGCTTAGGGGGTT-AAGATCTGTAAATCTTC-AGCCTGTTACCCTACTGCTTAG
1 TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCGT-CATCTTCGA-TCTGTTTCCCTACTGCTTAG
* *
75041728 GGGTTAAG-GCTTGTAAATTTGGCT
63 GGGTTAAGATC-TGTAAATTTAGCT
*
75041752 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCGTCATCTTCGATCTGTTTCCCTACTGCTTAGGG-
* * * *
75041817 GATAAGATCTG-CAA-TTCGGT
65 GTTAAGATCTGTAAATTTAGCT
* * * * *
75041837 CTGTTACCCTACCGATTA-GGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCGTCATCTTCGATCTGTTTCCCTACTGCTTA-G
*
75041901 GGGTTAAGATCTGTAAATCTTCAGCC
63 GGGTTAAGATCTGTAAAT-TT-AGCT
* ** * * * *
75041927 TGTTACCCTACTGCTTA-GGGGTTAAGGCTTGTAAAT-TTGGCT-TGTTACCCTACTGCTTAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCGT-CATCTTCGATCTGTTTCCCTACTGCTTA-GG
* ** * * *
75041989 GGTTAA-AGC-CCATCATCTTCGAT
64 GGTTAAGATCTGTA-AAT-TTAGCT
* ** *
75042012 CTGTTTCCCTACTGCTTAGGGGGTT-AAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAGCCCGTCATCTTCGATCTGTTTCCCTACTGCTTAGGG
* * * * *
75042076 AGATGAGATCTG-CAA-TTCGGT
65 -GTTAAGATCTGTAAATTTAGCT
* * * *
75042097 CTGTTACCCTAC-GATTA-GGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGG
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCGTCATCTTCGATCTGTTTCCCTACTGCTTA-G
*
75042160 GGGTTAAGATCTGTAAATCTTCAGCC
63 GGGTTAAGATCTGTAAAT-TT-AGCT
* *
75042186 TGTTACCCTATTGCTTAGGGGCTTAA
1 TGTTACCCTACTGCTTAGGGGGTTAA
75042212 GGCTTGTGAA
Statistics
Matches: 616, Mismatches: 139, Indels: 95
0.72 0.16 0.11
Matches are distributed among these distances:
83 6 0.01
84 44 0.07
85 102 0.17
86 209 0.34
87 182 0.30
88 35 0.06
89 31 0.05
90 7 0.01
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (86 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCGTCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
TTAAGATCTGTAAATTTAGCT
Found at i:75041926 original size:217 final size:215
Alignment explanation
Indices: 75041321--75042075 Score: 834
Period size: 217 Copynumber: 3.5 Consensus size: 215
75041311 ATTTCCAGCC
* * * * *
75041321 TGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTT-AGGG
* * * ** *
75041386 GTTAAGATCTGTAAATTCAACCTGTTACCCTACTGGTTAGGGGTTAAGA-TTTGTAAATCTTCAG
65 GTTAAGATCTGTAAATTCGATCTGTTACCCTACTGCTTAGGGGTTAAGACCCT-T-CATCTTCA-
* * * * * * *
75041450 CCTGTTACCCTACTGCTTA-GGGTTTAAGGTTTGTAAA--TTCGGCTTGTTACCCTACTGCTTAG
127 TCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAG
* *** * ***
75041512 GGGTTAAAGCCCAT-CATTTTTAT
192 GGGTTAAGGCTTGTAAATTTGGCT
* * ** * * * *
75041535 CTGTTTCCCTACTGCTTA-GGGGTT-AAGATCTGTAAATCTTC-AGCCAGTTACCCTACTGCTTA
1 -TGTTACCCTACTGCTTAGGGGGTTAAAG-CCCAT-CATCTTCGA-TCTGTTTCCCTACTGCTTA
* * * *
75041597 GGGGTTTAAG-GCTTGTAAATTCG-GCTTGTTACCCTACTGCTTAGGGGGTTAA-ACCCATCATT
62 GGGG-TTAAGATC-TGTAAATTCGATC-TGTTACCCTACTGCTTA-GGGGTTAAGACCCTTCATC
*
75041659 TTTATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGC
123 TTCATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGC
75041724 TTAGGGGTTAAGGCTTGTAAATTTGGCT
188 TTAGGGGTTAAGGCTTGTAAATTTGGCT
75041752 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGA
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGG-
* * * * * *
75041817 GATAAGATCTG-CAATTCGGTCTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGAT
65 GTTAAGATCTGTAAATTCGATCTGTTACCCTACTGCTTAGGGG-TTAAGACCCTTCATCTTC-AT
75041881 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
128 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGG
75041946 GGTTAAGGCTTGTAAATTTGGCT
193 GGTTAAGGCTTGTAAATTTGGCT
75041969 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTA-GGG
** *
75042034 GTTAAGATCT-TCATCTTCGATCTGTTTCCCTACTGCTTAGGG
65 GTTAAGATCTGT-AAATTCGATCTGTTACCCTACTGCTTAGGG
75042076 AGATGAGATC
Statistics
Matches: 452, Mismatches: 64, Indels: 45
0.81 0.11 0.08
Matches are distributed among these distances:
213 19 0.04
214 39 0.09
215 91 0.20
216 98 0.22
217 176 0.39
218 29 0.06
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (215 bp):
TGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGG
TTAAGATCTGTAAATTCGATCTGTTACCCTACTGCTTAGGGGTTAAGACCCTTCATCTTCATCTG
TTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGT
TAAGGCTTGTAAATTTGGCT
Found at i:75041987 original size:259 final size:260
Alignment explanation
Indices: 75041320--75042218 Score: 1094
Period size: 259 Copynumber: 3.5 Consensus size: 260
75041310 AATTTCCAGC
* * * * * * *
75041320 CTGTTACCCTACTACTTAGGGGTTTAAGGCCCATCATCTTCGATCTATTTCCCAACTGCTTAAGG
1 CTGTTACCCTACGA-TTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
* * **
75041385 GGTTAAGATCTGTAAA--TTCAACCTGTTACCCTACTGGTTAGGGGTTAAGATTTGTAAATCTTC
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATCTTC
* * *
75041448 AGCCTGTTACCCTACTGCTTAGGGTTTAAGGTTTGTAAATTCGGCTTGTTACCCTACTGCTTA-G
130 AGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGG
** * *
75041512 GGGTTAAAGCCCATCAT-TTTTATCTGTTTCCCTACTGCTTAGGG-GTTAAGATCTGTAAATCTT
195 GGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTG-CAA--TT
* *
75041575 CAGC
257 CGGT
* * * * * *
75041579 CAGTTACCCTACTGCTTAGGGGTTTAAG--GCTT-GTAAATTCG-GCTTGTTACCCTACTGCTTA
1 CTGTTACCCTAC-GATTAGGGGTTTAAGACCCTTCGT--CTTCGATC-TGTTTCCCTACTGCTTA
* ** * * * * * *
75041640 GGGGGTTAA-ACCCAT-CATTTTTA-TCTGTTTCCCTACTGCTTAGGGGGTTAA-GATCTGTAAA
62 GGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCT-TGTAAA
75041701 TCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGC
125 TCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGC
75041766 TTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAA
190 TTAGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAA
75041831 TTCGGT
255 TTCGGT
75041837 CTGTTACCCTACCGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
1 CTGTTACCCTA-CGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGG
75041902 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAAT-TT-
65 GGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATCTTC
* * * *** * * * *
75041965 GGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCAT-CATCTTCGATCTGTTTCCCTACTGCTT
130 AGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCTTGTAAAT-TTGGCT-TGTTACCCTACTGCTT
** * *
75042029 AGGGGGTT-AAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATGAGATCTGCAATT
192 AGGGGGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATT
75042093 CGGT
257 CGGT
75042097 CTGTTACCCTACGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
1 CTGTTACCCTACGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
*
75042162 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGGGGCTTAAGGCTTGT
66 GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCTTGT
75042219 GAATTCACTG
Statistics
Matches: 555, Mismatches: 61, Indels: 47
0.84 0.09 0.07
Matches are distributed among these distances:
256 2 0.00
257 23 0.04
258 136 0.25
259 191 0.34
260 129 0.23
261 55 0.10
262 19 0.03
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (260 bp):
CTGTTACCCTACGATTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCCCTACTGCTTAGGGG
GTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATCTTCA
GCCTGTTACCCTACTGCTTAGGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGG
GGTTAAAGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGT
Found at i:75042192 original size:217 final size:217
Alignment explanation
Indices: 75041662--75042211 Score: 693
Period size: 217 Copynumber: 2.5 Consensus size: 217
75041652 CATCATTTTT
* * *
75041662 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGTTACCCTACTGATTAGGGGGTTAAGACCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
75041727 GGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC
66 GGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC
*
75041792 GATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGGTCTGTTACCCTACCGATTAGG
131 GATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGATCTGTTACCCTACCGATTAGG
* * **
75041857 GGTTTAAGACCCTTCGTCTTCG
196 GGTATAAGACCCTGCGAATTCG
* * *
75041879 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
1 ATCTGTTACCCTACTGATTAGGGGGTTAAGACCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
75041944 GGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC
66 GGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC
* * * * * * *
75042009 GATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTCATCTTCGATCTGTTTCCCTACTGCTTAG
131 GATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCA-ATTCGATCTGTTACCCTACCGATTAG
* *
75042074 GGAG-ATGAGA-TCTGC-AATTCG
195 GG-GTATAAGACCCTGCGAATTCG
* * ** * *
75042095 GTCTGTTACCCTAC-GATTAGGGGTTTAAGACCCT-T-CGTCTTC-GATCTGTTTCCCTACTGCT
1 ATCTGTTACCCTACTGATTAGGGGGTTAAGA-CCTGTAAATCTTCAG-CCTGTTACCCTACTGCT
* * * * *
75042156 TAGGGGGTTAA-GATCTGTAAATCTTCAGCCTGTTACCCTATTGCTTAGGGGCTTAA
64 TA-GGGGTTAAGGCT-TGTAAAT-TT-GGCTTGTTACCCTACTGCTTAGGGGGTTAA
75042212 GGCTTGTGAA
Statistics
Matches: 297, Mismatches: 28, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
213 1 0.00
214 24 0.08
215 30 0.10
216 20 0.07
217 194 0.65
218 27 0.09
219 1 0.00
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (217 bp):
ATCTGTTACCCTACTGATTAGGGGGTTAAGACCTGTAAATCTTCAGCCTGTTACCCTACTGCTTA
GGGGTTAAGGCTTGTAAATTTGGCTTGTTACCCTACTGCTTAGGGGGTTAAAGCCCATCATCTTC
GATCTGTTTCCCTACTGCTTAGGGAGATAAGATCTGCAATTCGATCTGTTACCCTACCGATTAGG
GGTATAAGACCCTGCGAATTCG
Found at i:75042382 original size:66 final size:66
Alignment explanation
Indices: 75042276--75042402 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 66
75042266 TCTATGCTTA
*
75042276 TGTCAAATGATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
75042341 G
66 G
*
75042342 TGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
1 TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTAT
75042403 TATATGAATG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 59 1.00
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (66 bp):
TGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
G
Found at i:75043546 original size:1 final size:1
Alignment explanation
Indices: 75043542--75043584 Score: 50
Period size: 1 Copynumber: 43.0 Consensus size: 1
75043532 TTTTTTAGAA
* * * *
75043542 TTTTTTTTTTTTTTTGTGTTTTTGTGTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
75043585 GCCTTTGCCT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (1 bp):
T
Found at i:75046410 original size:19 final size:20
Alignment explanation
Indices: 75046386--75046432 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
75046376 AGTGAAAGTT
75046386 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
75046405 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
75046425 -AATGCAAA
1 TAATGCAAA
75046433 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:75048870 original size:2 final size:2
Alignment explanation
Indices: 75048863--75048897 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
75048853 ACAATAATAC
*
75048863 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
75048898 ATAGAAATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:75049018 original size:20 final size:20
Alignment explanation
Indices: 75048993--75049032 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
75048983 AAAACAATAC
*
75048993 TATATATAAATATAAATATA
1 TATATATAAATAAAAATATA
*
75049013 TATATATACATAAAAATATA
1 TATATATAAATAAAAATATA
75049033 CACTAATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATATAAATAAAAATATA
Found at i:75049268 original size:3 final size:3
Alignment explanation
Indices: 75049255--75049340 Score: 65
Period size: 3 Copynumber: 28.3 Consensus size: 3
75049245 GAGGGCATAT
75049255 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
75049299 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
75049341 AACGAAGCTC
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
2 9 0.13
3 48 0.71
4 9 0.13
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.03, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:75049279 original size:12 final size:12
Alignment explanation
Indices: 75049255--75049337 Score: 73
Period size: 12 Copynumber: 6.8 Consensus size: 12
75049245 GAGGGCATAT
75049255 ATAATAT-AATA
1 ATAATATAAATA
75049266 ATAATATAAATA
1 ATAATATAAATA
75049278 ATAATATATACATGA
1 ATAATATA-A-AT-A
75049293 GA-AATA-ATAATA
1 -ATAATATA-AATA
75049305 ATAATATAAATA
1 ATAATATAAATA
* *
75049317 ATAGTAAAAATA
1 ATAATATAAATA
*
75049329 ATAAAATAA
1 ATAATATAA
75049338 TAAAACGAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 8 0.13
12 37 0.62
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:75049299 original size:21 final size:18
Alignment explanation
Indices: 75049260--75049340 Score: 76
Period size: 18 Copynumber: 4.4 Consensus size: 18
75049250 CATATATAAT
*
75049260 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
75049278 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
75049299 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
* *
75049317 ATAGTAAAAATA-ATAA-A
1 ATAATAATAATAGA-AATA
75049334 ATAATAA
1 ATAATAA
75049341 AACGAAGCTC
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
17 8 0.15
18 24 0.44
19 5 0.09
20 5 0.09
21 12 0.22
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:75049328 original size:27 final size:27
Alignment explanation
Indices: 75049255--75049341 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
75049245 GAGGGCATAT
* *
75049255 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
75049281 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
75049305 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
75049332 A-AATAATAAA
1 ATAAT-ATAAA
75049342 ACGAAGCTCT
Statistics
Matches: 48, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
23 2 0.04
24 10 0.21
25 11 0.23
26 7 0.15
27 15 0.31
28 3 0.06
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:75049712 original size:23 final size:23
Alignment explanation
Indices: 75049686--75049749 Score: 76
Period size: 23 Copynumber: 2.8 Consensus size: 23
75049676 CAAAAATACA
75049686 CCTCCAAAAAAACAAAAAAACCT
1 CCTCCAAAAAAACAAAAAAACCT
* * *
75049709 CCTCCAAAACAAA-GAACAATCCT
1 CCTCCAAAA-AAACAAAAAAACCT
*
75049732 CCTCCAAAAAACCAAAAA
1 CCTCCAAAAAAACAAAAA
75049750 CCCACCCTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 2 0.06
23 28 0.85
24 3 0.09
ACGTcount: A:0.56, C:0.33, G:0.02, T:0.09
Consensus pattern (23 bp):
CCTCCAAAAAAACAAAAAAACCT
Found at i:75052804 original size:24 final size:26
Alignment explanation
Indices: 75052741--75052805 Score: 73
Period size: 24 Copynumber: 2.6 Consensus size: 26
75052731 TGTAAAAAGG
75052741 GTTTAAAATAAATGATATGCAAGATAA
1 GTTTAAAATAAAT-ATATGCAAGATAA
* *
75052768 -TTTAAGATAAATA-ATGGAA-ATAA
1 GTTTAAAATAAATATATGCAAGATAA
*
75052791 GTTTAAAATGAATAT
1 GTTTAAAATAAATAT
75052806 TATGTAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
23 4 0.12
24 16 0.50
25 1 0.03
26 11 0.34
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.32
Consensus pattern (26 bp):
GTTTAAAATAAATATATGCAAGATAA
Found at i:75052947 original size:22 final size:22
Alignment explanation
Indices: 75052922--75052993 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 22
75052912 GAAAAAAGAG
75052922 AAAAAAATTTAAAGTAAATAAT
1 AAAAAAATTTAAAGTAAATAAT
* *
75052944 AAAACAATTTAAAATGAATAATACAT
1 AAAAAAATTT-AAA-GTA-AATA-AT
*
75052970 AAAAATAAGTTTAAAATAAATAAT
1 AAAAA-AA-TTTAAAGTAAATAAT
75052994 GTATAAAGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
22 9 0.23
23 3 0.08
24 4 0.10
25 8 0.21
26 7 0.18
27 5 0.13
28 3 0.08
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (22 bp):
AAAAAAATTTAAAGTAAATAAT
Found at i:75053068 original size:24 final size:25
Alignment explanation
Indices: 75053038--75053114 Score: 77
Period size: 26 Copynumber: 3.1 Consensus size: 25
75053028 AAAAGGTTTC
*
75053038 AAATAAAGAAT-GTATAA-AAACTTA
1 AAATAAAGAATACTA-AAGAAACTTA
*
75053062 AAATAAATAATACTAAAGAAACTTA
1 AAATAAAGAATACTAAAGAAACTTA
* * *
75053087 AAATAAATAAATACAAAAGAAATTTA
1 AAATAAA-GAATACTAAAGAAACTTA
75053113 AA
1 AA
75053115 GGTGAATAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
24 12 0.27
25 16 0.36
26 17 0.38
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.23
Consensus pattern (25 bp):
AAATAAAGAATACTAAAGAAACTTA
Found at i:75053086 original size:25 final size:26
Alignment explanation
Indices: 75053055--75053114 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
75053045 GAATGTATAA
*
75053055 AAACTTAAAATAAAT-AATACTAAAG
1 AAACTTAAAATAAATAAATACAAAAG
75053080 AAACTTAAAATAAATAAATACAAAAG
1 AAACTTAAAATAAATAAATACAAAAG
*
75053106 AAATTTAAA
1 AAACTTAAA
75053115 GGTGAATAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 15 0.47
26 17 0.53
ACGTcount: A:0.67, C:0.07, G:0.03, T:0.23
Consensus pattern (26 bp):
AAACTTAAAATAAATAAATACAAAAG
Found at i:75053549 original size:43 final size:43
Alignment explanation
Indices: 75053489--75053577 Score: 169
Period size: 43 Copynumber: 2.1 Consensus size: 43
75053479 ACATAATATA
*
75053489 AAAAAAACAAGCTTTGAATAAATGAATAATAAAATAGTTTCCT
1 AAAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
75053532 AAAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
1 AAAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
75053575 AAA
1 AAA
75053578 GAATGAAATA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.56, C:0.09, G:0.08, T:0.27
Consensus pattern (43 bp):
AAAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
Found at i:75053595 original size:43 final size:43
Alignment explanation
Indices: 75053489--75053601 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
75053479 ACATAATATA
* * * *
75053489 AAAAAAACAAGCTTTGAATAAATGAATAATAAAATAGTTTCCT
1 AAAAAAACAAGATATAAATAAATAAATAATAAAATAGTTTCCT
* * *
75053532 AAAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
1 AAAAAAACAAGATATAAATAAATAAATAATAAAATAGTTTCCT
* **
75053575 AAAGAATGAA-ATAATAAATAAATAAAT
1 AAAAAAACAAGAT-ATAAATAAATAAAT
75053602 TAAATAGATT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 61 0.98
ACGTcount: A:0.58, C:0.07, G:0.08, T:0.27
Consensus pattern (43 bp):
AAAAAAACAAGATATAAATAAATAAATAATAAAATAGTTTCCT
Found at i:75055106 original size:44 final size:44
Alignment explanation
Indices: 75055043--75056017 Score: 1372
Period size: 44 Copynumber: 22.2 Consensus size: 44
75055033 CGGGAGCACC
* * *
75055043 AATCTGTTAT-TTTCGATCTGCTCTCTGCCAATACAGAGATGCCA
1 AATCTGCTATCTTT-GATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * * *
75055087 AATCTG-TCATCCTTGATCTGCTCTCTGTCAACACAGAGATGTCA
1 AATCTGCT-ATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * *
75055131 AATCTGCTATCTTCGATCTGCTCTCCGCCAACACAGAGATGCAA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
*
75055175 AATCTGCTATCTTTGATCTGCTCTCCGCTAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* *
75055219 AATCTGCTATCTTTGATCTGC-CCCCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCC-GCCAATACAGAGACGCCA
* * * *
75055263 AATCTGTTATCTTCGATCTGCTCTCCACCAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
*
75055307 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * *
75055351 AATTTGCTATCTTTGATCTGCCCTCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
*
75055395 AATCTGCTATCTTTGATCTGCTCTCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
*
75055439 AATCTGCTATCTTTGATCTGTTCTCCGCCAATACA-AGGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGA-GACGCCA
75055483 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* * *
75055527 AATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
75055571 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* * *
75055615 AATCTGCTATCTTCGATCTGC-CTCTGACAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* *
75055658 AATCTGCTATCTTTGATCTGCTC-CCTGCCAATACAGAGATGTCA
1 AATCTGCTATCTTTGATCTGCTCTCC-GCCAATACAGAGACGCCA
*
75055702 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * * *
75055746 AATCTGCTATCTTCGATCTGCCCTCTGACAATACAGAGACGCAA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
75055790 AATCTGCTATCTTTGATCTGCTC-CCTGCCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCC-GCCAATACAGAGACGCCA
*
75055834 AATCTGCTATCTTTGATCTGCTCTCCACCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
** *
75055878 AATCTGCTATCTTCAATTTGCTCTCCGCCAATACAGAGACGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
* * * *
75055922 AATCTGCTATCTTTGATCTGC-CTTCTGACAATCCAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTC-TCCGCCAATACAGAGACGCCA
* *
75055966 AATCTGCTATCTTCGATCTGCTCTCCGCCAATACAGAGATGCCA
1 AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
75056010 AATCTGCT
1 AATCTGCT
75056018 GGATTCGCCA
Statistics
Matches: 837, Mismatches: 80, Indels: 28
0.89 0.08 0.03
Matches are distributed among these distances:
43 48 0.06
44 777 0.93
45 12 0.01
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (44 bp):
AATCTGCTATCTTTGATCTGCTCTCCGCCAATACAGAGACGCCA
Found at i:75056632 original size:354 final size:354
Alignment explanation
Indices: 75055983--75056693 Score: 1332
Period size: 354 Copynumber: 2.0 Consensus size: 354
75055973 TATCTTCGAT
*
75055983 CTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTGGATTCGCCAATGTTGCTACGCTGTCTTCT
1 CTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTGGATTCGCCAATGTCGCTACGCTGTCTTCT
75056048 AAAGACATGATGTGTAGAATGGGTTTCCTATATCTGCGTATATCAAATAACTAGAATGCTATGAT
66 AAAGACATGATGTGTAGAATGGGTTTCCTATATCTGCGTATATCAAATAACTAGAATGCTATGAT
*
75056113 CGAGATGAATCAAATGTCCCTAACTAGATGAATGATTATGAATGTAGAAATGTTATGAGAGTGAT
131 CGAGATGAATCAAATATCCCTAACTAGATGAATGATTATGAATGTAGAAATGTTATGAGAGTGAT
**
75056178 TCCTTTTTAAATGCTTAAGGTGTCATTGCCCACAATTCGTTTGGGTTCTATCATTGATGTGCTAT
196 TCCTTTTTAAATGCTTAAGGTGTCATTGCCCACAATTCGTCCGGGTTCTATCATTGATGTGCTAT
*
75056243 CACGTCTTCCTACTTAGCCGTTATCTCTGACAGAAAATTTGAAGAAATAGTCCAAATTTGGACTA
261 CACATCTTCCTACTTAGCCGTTATCTCTGACAGAAAATTTGAAGAAATAGTCCAAATTTGGACTA
*
75056308 CTCTTTTTCAATGTTTTCCAACTTTGAAC
326 CTCTTTTTCAATGTTTTCCAACTTCGAAC
75056337 CTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTGGATTCGCCAATGTCGCTACGCTGTCTTCT
1 CTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTGGATTCGCCAATGTCGCTACGCTGTCTTCT
*
75056402 AAAGACATGATGTGTAGAATGGGTTTCCTATATCTGCGTATATCAAATAACTAGGATGCTATGAT
66 AAAGACATGATGTGTAGAATGGGTTTCCTATATCTGCGTATATCAAATAACTAGAATGCTATGAT
*
75056467 CGAGATGAATCAAATATCCCTAACTAGATGAATGATTATGGATGTAGAAATGTTATGAGAGTGAT
131 CGAGATGAATCAAATATCCCTAACTAGATGAATGATTATGAATGTAGAAATGTTATGAGAGTGAT
*
75056532 TCCTTTTTAAATGCTTAAGGTGTCATTGCCCATAATTCGTCCGGGTTCTATCATTGATGTGCTAT
196 TCCTTTTTAAATGCTTAAGGTGTCATTGCCCACAATTCGTCCGGGTTCTATCATTGATGTGCTAT
*
75056597 CACATCTTCCTGCTTAGCCGTTATCTCTGACAGAAAATTTGAAGAAATAGTCCAAATTTGGACTA
261 CACATCTTCCTACTTAGCCGTTATCTCTGACAGAAAATTTGAAGAAATAGTCCAAATTTGGACTA
75056662 CTCTTTTTCAATGTTTTCCAACTTCGAAC
326 CTCTTTTTCAATGTTTTCCAACTTCGAAC
75056691 CTG
1 CTG
75056694 GTTAGTCCTG
Statistics
Matches: 347, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
354 347 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (354 bp):
CTGCTCTCCGCCAATACAGAGATGCCAAATCTGCTGGATTCGCCAATGTCGCTACGCTGTCTTCT
AAAGACATGATGTGTAGAATGGGTTTCCTATATCTGCGTATATCAAATAACTAGAATGCTATGAT
CGAGATGAATCAAATATCCCTAACTAGATGAATGATTATGAATGTAGAAATGTTATGAGAGTGAT
TCCTTTTTAAATGCTTAAGGTGTCATTGCCCACAATTCGTCCGGGTTCTATCATTGATGTGCTAT
CACATCTTCCTACTTAGCCGTTATCTCTGACAGAAAATTTGAAGAAATAGTCCAAATTTGGACTA
CTCTTTTTCAATGTTTTCCAACTTCGAAC
Found at i:75058914 original size:159 final size:157
Alignment explanation
Indices: 75058675--75058985 Score: 452
Period size: 159 Copynumber: 2.0 Consensus size: 157
75058665 TTTTTTTTAA
* *
75058675 AAGAGGAAGTTTAGATTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAAA
1 AAGAGAAAATTTAGATTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAAA
* *
75058740 ATTTTAAAATAAAAGTTTTGAT-TCTTTTCAACTATTTCGAAATAAAAGCTTTGATCTTTAAG-A
66 ATTTTAAAATAAAAGTTTCGATCT-TTTTCAACTATTTCAAAAT-AAAGCTTTGATCTTTAAGAA
75058803 AAGTAGTGAGTTTTTT-AAAAGAAAAAAAG
129 AAGTAGT-AGTTTTTTAAAAAGAAAAAAAG
*
75058832 AAGAGAAAATTTAGATTTTTAAGAATAAAAATCTAT-TTTTTTTAGTCATTTTAAAGGAAAAGTT
1 AAGAGAAAATTTAGA-TTTTAAAAATAAAAA--TATGTTTTTTTAGTCATTTTAAAGG-AAAGTT
*
75058896 TAAAATTTTAAAA-CAAAGTTTCGATCTTTTTCAACTATTTCAAAATAAAGCTTTGATCTTTAAG
62 TAAAATTTTAAAATAAAAGTTTCGATCTTTTTCAACTATTTCAAAATAAAGCTTTGATCTTTAAG
* *
75058960 AAAAGTTGTATTTTTTTAAAAAGAAA
127 AAAAGTAGTAGTTTTTTAAAAAGAAA
75058986 GCTTTGGTTT
Statistics
Matches: 139, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
157 13 0.09
158 39 0.28
159 64 0.46
160 23 0.17
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.39
Consensus pattern (157 bp):
AAGAGAAAATTTAGATTTTAAAAATAAAAATATGTTTTTTTAGTCATTTTAAAGGAAAGTTTAAA
ATTTTAAAATAAAAGTTTCGATCTTTTTCAACTATTTCAAAATAAAGCTTTGATCTTTAAGAAAA
GTAGTAGTTTTTTAAAAAGAAAAAAAG
Found at i:75062847 original size:26 final size:27
Alignment explanation
Indices: 75062818--75062876 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
75062808 CTTATTTCAT
*
75062818 TAAATAAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAAATATTTAAAAACATAA
* *
75062844 TAAAT-CAAATATATTTAAAAACATAA
1 TAAATAAAAAAATATTTAAAAACATAA
75062870 -AAATAAA
1 TAAATAAA
75062877 TATTAAAACA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (27 bp):
TAAATAAAAAAATATTTAAAAACATAA
Found at i:75062891 original size:22 final size:22
Alignment explanation
Indices: 75062850--75062908 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
75062840 ATAATAAATC
* *
75062850 AAATATAT-TTAAAA-ACATAA
1 AAATAAATATTAAAACAAATAA
75062870 AAATAAATATTAAAACAAATAA
1 AAATAAATATTAAAACAAATAA
*
75062892 AAAT-AATACTAAAACAA
1 AAATAAATATTAAAACAA
75062909 TTCTTAAAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 18 0.53
22 9 0.26
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (22 bp):
AAATAAATATTAAAACAAATAA
Found at i:75062985 original size:15 final size:16
Alignment explanation
Indices: 75062955--75062987 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
75062945 AAATAGTTAT
75062955 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
75062972 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
75062987 A
1 A
75062988 AATATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:75069069 original size:43 final size:43
Alignment explanation
Indices: 75068993--75069099 Score: 162
Period size: 44 Copynumber: 2.5 Consensus size: 43
75068983 TTATTTAAAA
*
75068993 AAACGCCGCTAAAGGCCATGACCTTTAGCGGCGC-TTTCCCAC
1 AAACGCCGCTAAAGGCCATGACCTTTAACGGCGCTTTTCCCAC
**
75069035 AAACGCCGCTAAAGGACTTTGACCTTTAACGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGG-CCATGACCTTTAACGGCGCTTTTCCCAC
*
75069079 AAACGCCGCTAAAGGTCATGA
1 AAACGCCGCTAAAGGCCATGA
75069100 AATTTAAAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
42 15 0.26
43 19 0.33
44 23 0.40
ACGTcount: A:0.27, C:0.32, G:0.21, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGGCCATGACCTTTAACGGCGCTTTTCCCAC
Found at i:75072020 original size:16 final size:15
Alignment explanation
Indices: 75071999--75072039 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
75071989 TAAATGAGAT
75071999 TTTCTTTCTGTTTTCC
1 TTTCTTTCT-TTTTCC
75072015 TTTCTTTCTTTTT-C
1 TTTCTTTCTTTTTCC
75072029 TTT-TTT-TTTTT
1 TTTCTTTCTTTTT
75072040 TGGCACAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 5 0.20
13 3 0.12
14 4 0.16
15 4 0.16
16 9 0.36
ACGTcount: A:0.00, C:0.17, G:0.02, T:0.80
Consensus pattern (15 bp):
TTTCTTTCTTTTTCC
Found at i:75073859 original size:14 final size:14
Alignment explanation
Indices: 75073840--75073911 Score: 99
Period size: 14 Copynumber: 5.0 Consensus size: 14
75073830 TAAATATTAA
75073840 ATTTTTAAGTTTTTT
1 ATTTTTAA-TTTTTT
75073855 ATTTTTAAGTTTTTT
1 ATTTTTAA-TTTTTT
*
75073870 ATTTTTTATTTTTT
1 ATTTTTAATTTTTT
*
75073884 ATTTTTTATTTTTT
1 ATTTTTAATTTTTT
*
75073898 ATTTTTTATTTTTT
1 ATTTTTAATTTTTT
75073912 TTGAATATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
14 34 0.61
15 22 0.39
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.81
Consensus pattern (14 bp):
ATTTTTAATTTTTT
Found at i:75073874 original size:7 final size:7
Alignment explanation
Indices: 75073849--75073911 Score: 108
Period size: 7 Copynumber: 8.9 Consensus size: 7
75073839 AATTTTTAAG
75073849 TTTTTTA
1 TTTTTTA
*
75073856 TTTTTAA
1 TTTTTTA
75073863 GTTTTTTA
1 -TTTTTTA
75073871 TTTTTTA
1 TTTTTTA
75073878 TTTTTTA
1 TTTTTTA
75073885 TTTTTTA
1 TTTTTTA
75073892 TTTTTTA
1 TTTTTTA
75073899 TTTTTTA
1 TTTTTTA
75073906 TTTTTT
1 TTTTTT
75073912 TTGAATATTT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
7 47 0.89
8 6 0.11
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (7 bp):
TTTTTTA
Found at i:75073881 original size:21 final size:21
Alignment explanation
Indices: 75073839--75073911 Score: 101
Period size: 21 Copynumber: 3.4 Consensus size: 21
75073829 TTAAATATTA
*
75073839 AATTTTTAAGTTTTTTATTTTT
1 AATTTTTTA-TTTTTTATTTTT
75073861 AAGTTTTTTATTTTTTATTTTT
1 AA-TTTTTTATTTTTTATTTTT
*
75073883 TATTTTTTATTTTTTATTTTT
1 AATTTTTTATTTTTTATTTTT
*
75073904 TATTTTTT
1 AATTTTTT
75073912 TTGAATATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
21 27 0.56
22 15 0.31
23 6 0.12
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (21 bp):
AATTTTTTATTTTTTATTTTT
Found at i:75074446 original size:29 final size:28
Alignment explanation
Indices: 75074409--75074469 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
75074399 TTTTTTAGAT
*
75074409 TTTAGGGTTTACAGTTTAAGAGTTTATGA
1 TTTAGGGTTTACAGTTT-AGAGTTTATAA
* * *
75074438 TTTATGGTTTATAGTTTAGGGTTTATAA
1 TTTAGGGTTTACAGTTTAGAGTTTATAA
75074466 TTTA
1 TTTA
75074470 CGATCTATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.26, C:0.02, G:0.21, T:0.51
Consensus pattern (28 bp):
TTTAGGGTTTACAGTTTAGAGTTTATAA
Found at i:75074463 original size:14 final size:14
Alignment explanation
Indices: 75074409--75074491 Score: 69
Period size: 14 Copynumber: 5.8 Consensus size: 14
75074399 TTTTTTAGAT
*
75074409 TTTAGGGTTTACAG
1 TTTAGGGTTTATAG
*
75074423 TTTAAGAGTTTAT-G
1 TTT-AGGGTTTATAG
*
75074437 ATTTATGGTTTATAG
1 -TTTAGGGTTTATAG
*
75074452 TTTAGGGTTTATAA
1 TTTAGGGTTTATAG
* * *
75074466 TTTACGATCTATAG
1 TTTAGGGTTTATAG
75074480 TTTATGGGTTTA
1 TTTA-GGGTTTA
75074492 GAGGTTAGTT
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
14 37 0.71
15 15 0.29
ACGTcount: A:0.25, C:0.04, G:0.22, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTATAG
Found at i:75074552 original size:15 final size:14
Alignment explanation
Indices: 75074501--75074553 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
75074491 AGAGGTTAGT
*
75074501 TTTAAGGCTTGGGG
1 TTTAAGGGTTGGGG
75074515 TTTAAGGGTTGGGG
1 TTTAAGGGTTGGGG
* *
75074529 TTTAGGGGTTGGAGT
1 TTTAAGGGTTGG-GG
75074544 TTTAAGGGTT
1 TTTAAGGGTT
75074554 TATGATTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 24 0.71
15 10 0.29
ACGTcount: A:0.15, C:0.02, G:0.43, T:0.40
Consensus pattern (14 bp):
TTTAAGGGTTGGGG
Found at i:75075325 original size:41 final size:41
Alignment explanation
Indices: 75075280--75075538 Score: 385
Period size: 41 Copynumber: 6.3 Consensus size: 41
75075270 TTACATGACT
*
75075280 TTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
*
75075321 TTTAGCGGCGTTTTACCAGAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * *
75075362 TTTAGCGGCGTTTTACCAGAAGCGACGCTAATGCTTTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* * * *
75075403 TTTAGCGGCGTTTTACCCAAACCGCAGCTAATGCTTTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
*
75075444 TTTAGTGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
* ** *
75075485 TTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTC-AATT
1 TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
75075525 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
75075539 TGCTAAAATG
Statistics
Matches: 199, Mismatches: 19, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
40 15 0.08
41 184 0.92
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.32
Consensus pattern (41 bp):
TTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGGTC
Found at i:75075764 original size:15 final size:15
Alignment explanation
Indices: 75075744--75075795 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
75075734 ATTCATTTAT
75075744 TAATATTTTAACATA
1 TAATATTTTAACATA
*
75075759 TAATATTTTAA-TTA
1 TAATATTTTAACATA
* * *
75075773 AAACA-TTTAACAAA
1 TAATATTTTAACATA
75075787 TAATATTTT
1 TAATATTTT
75075796 TTATTTTTCC
Statistics
Matches: 28, Mismatches: 7, Indels: 4
0.72 0.18 0.10
Matches are distributed among these distances:
13 5 0.18
14 9 0.32
15 14 0.50
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATATTTTAACATA
Found at i:75078567 original size:21 final size:21
Alignment explanation
Indices: 75078541--75078593 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
75078531 CGCTGTTTCT
*
75078541 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
75078562 AATCTCACCGCTATAGTAACT
1 AATCTCACCGCTACAGTAACC
*
75078583 AATCACACCGC
1 AATCTCACCGC
75078594 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.32, C:0.36, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:75081262 original size:15 final size:16
Alignment explanation
Indices: 75081242--75081274 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
75081232 ATATATTTTT
75081242 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
75081257 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
75081274 T
1 T
75081275 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:75081347 original size:21 final size:22
Alignment explanation
Indices: 75081321--75081371 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
75081311 GTTTTAAGAA
*
75081321 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
75081342 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
75081364 GT-TTTTAA
1 TTGTTTTAA
75081372 ATATAGTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.71
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:75081374 original size:22 final size:22
Alignment explanation
Indices: 75081330--75081398 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 22
75081320 ATTGTTTTAG
*
75081330 TATTATTTTTATTTGTTTTAATA
1 TATTATTTTTATTT-TTTAAATA
75081353 T-TTATTTTTATGTTTTTAAATA
1 TATTATTTTTAT-TTTTTAAATA
75081375 TAGTTGATTTATTATATTTTTAAA
1 TA-TT-ATTT-TTAT-TTTTTAAA
75081399 CTTTTTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
22 18 0.46
23 3 0.08
24 2 0.05
25 4 0.10
26 12 0.31
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (22 bp):
TATTATTTTTATTTTTTAAATA
Found at i:75091007 original size:16 final size:16
Alignment explanation
Indices: 75090986--75091019 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
75090976 ACGAAATAGG
*
75090986 AAAGAAAGAAAGGAGA
1 AAAGAAAGAAAAGAGA
75091002 AAAGAAAGAAAAGAGA
1 AAAGAAAGAAAAGAGA
75091018 AA
1 AA
75091020 TTAGGGATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAAGAAAGAAAAGAGA
Found at i:75091966 original size:21 final size:21
Alignment explanation
Indices: 75091938--75091987 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
75091928 TCAACCTCGA
*
75091938 GTCG-ATTAGGCACTATATGT
1 GTCGTATTAGGCACCATATGT
*
75091958 GTCGTATTAGGCACCATGTGT
1 GTCGTATTAGGCACCATATGT
75091979 GTCGTATTA
1 GTCGTATTA
75091988 TTACTTCTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.22, C:0.16, G:0.26, T:0.36
Consensus pattern (21 bp):
GTCGTATTAGGCACCATATGT
Found at i:75097977 original size:72 final size:71
Alignment explanation
Indices: 75097856--75098002 Score: 240
Period size: 72 Copynumber: 2.1 Consensus size: 71
75097846 ACCAATGCAA
* * * *
75097856 AAAGGTTGTGGAATATTACAAGGTTTGACCTTTACTTACCCCAAGTAGCAGATATAATCACAATA
1 AAAGGTCGCGGAATATTACAAAGTTTGAACTTTACTTACCCCAAGTAGCAGATATAATCACAATA
75097921 ATAACAT
66 ATAAC-T
*
75097928 AAAGGTCGCGGAATATTACAAAGTTTGAACTTTACTTACCCCAATTAGCAGATATAATCACAATA
1 AAAGGTCGCGGAATATTACAAAGTTTGAACTTTACTTACCCCAAGTAGCAGATATAATCACAATA
75097993 ATAACT
66 ATAACT
75097999 AAAG
1 AAAG
75098003 CAAAAAAGTG
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
71 5 0.07
72 65 0.93
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (71 bp):
AAAGGTCGCGGAATATTACAAAGTTTGAACTTTACTTACCCCAAGTAGCAGATATAATCACAATA
ATAACT
Found at i:75104746 original size:19 final size:19
Alignment explanation
Indices: 75104722--75104762 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
75104712 AAAGAAACAA
75104722 AGAAAAAGTATCTCATACT
1 AGAAAAAGTATCTCATACT
75104741 AGAAAAAGTATCTCATACT
1 AGAAAAAGTATCTCATACT
75104760 AGA
1 AGA
75104763 TCCAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.24
Consensus pattern (19 bp):
AGAAAAAGTATCTCATACT
Found at i:75110175 original size:42 final size:43
Alignment explanation
Indices: 75110081--75110186 Score: 112
Period size: 42 Copynumber: 2.5 Consensus size: 43
75110071 ACATAGGATC
* * *
75110081 CGATATGTGTTTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCACGTCTGGCACGTTGGCAT
*
75110124 CG-TACTTGATTTCGTGTAAGACC-CTGTCTAGGCA-G-TGGCAT
1 CGATATTTGATTTCGTGTAAGACCAC-GTCT-GGCACGTTGGCAT
* *
75110165 CGATATTTGATTACATGTAAGA
1 CGATATTTGATTTCGTGTAAGA
75110187 TCATATCTGA
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
41 9 0.17
42 39 0.74
43 5 0.09
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCACGTCTGGCACGTTGGCAT
Found at i:75123635 original size:30 final size:30
Alignment explanation
Indices: 75123601--75123658 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
75123591 CATGGGCTGG
75123601 CACATGGGTATGTGGCCAGCCCGTGTGGCT
1 CACATGGGTATGTGGCCAGCCCGTGTGGCT
* *
75123631 CACATGGGTGTGTGGCCAGCCTGTGTGG
1 CACATGGGTATGTGGCCAGCCCGTGTGG
75123659 AAATGCCCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.12, C:0.24, G:0.40, T:0.24
Consensus pattern (30 bp):
CACATGGGTATGTGGCCAGCCCGTGTGGCT
Found at i:75125050 original size:5 final size:5
Alignment explanation
Indices: 75125040--75125091 Score: 104
Period size: 5 Copynumber: 10.4 Consensus size: 5
75125030 TTATGTTTTA
75125040 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
75125090 AT
1 AT
75125092 ATAAACATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:75126089 original size:18 final size:19
Alignment explanation
Indices: 75126068--75126106 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
75126058 ATATATAGAT
75126068 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
75126086 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
75126105 AT
1 AT
75126107 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:75126456 original size:39 final size:39
Alignment explanation
Indices: 75126346--75126480 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
75126336 GACCTCGAGT
* * * *
75126346 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
75126387 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
75126425 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
75126464 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
75126481 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:75126624 original size:18 final size:19
Alignment explanation
Indices: 75126603--75126643 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
75126593 AATAAAATGA
75126603 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
75126621 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
75126640 GAAA
1 GAAA
75126644 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:75131136 original size:5 final size:5
Alignment explanation
Indices: 75131126--75131177 Score: 104
Period size: 5 Copynumber: 10.4 Consensus size: 5
75131116 TTATGTTTTA
75131126 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
75131176 AT
1 AT
75131178 ATAAACATAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:75132175 original size:18 final size:19
Alignment explanation
Indices: 75132154--75132192 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
75132144 ATATATAGAT
75132154 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
75132172 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
75132191 AT
1 AT
75132193 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:75132542 original size:39 final size:39
Alignment explanation
Indices: 75132432--75132566 Score: 112
Period size: 39 Copynumber: 3.4 Consensus size: 39
75132422 GACCTCGAGT
* * * *
75132432 CGATGAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
75132473 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
75132511 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
75132550 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
75132567 CCATATTGGT
Statistics
Matches: 73, Mismatches: 19, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:75132710 original size:18 final size:19
Alignment explanation
Indices: 75132689--75132729 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
75132679 AATGAAATGA
75132689 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
75132707 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
75132726 GAAA
1 GAAA
75132730 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:75134620 original size:9 final size:9
Alignment explanation
Indices: 75134606--75134643 Score: 60
Period size: 9 Copynumber: 4.3 Consensus size: 9
75134596 AAGAAAGATA
75134606 AAAAATAAT
1 AAAAATAAT
75134615 AAAAATAAT
1 AAAAATAAT
75134624 -AAAATAAT
1 AAAAATAAT
*
75134632 AATAATAAT
1 AAAAATAAT
75134641 AAA
1 AAA
75134644 CTCAATGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
8 8 0.31
9 18 0.69
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAAATAAT
Found at i:75134624 original size:3 final size:3
Alignment explanation
Indices: 75134609--75134642 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
75134599 AAAGATAAAA
*
75134609 AAT AAT AAA AAT AAT AA- AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
75134643 ACTCAATGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (3 bp):
AAT
Found at i:75134629 original size:17 final size:17
Alignment explanation
Indices: 75134603--75134643 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
75134593 AAAAAGAAAG
75134603 ATAA-AAAATAATAAAA
1 ATAATAAAATAATAAAA
*
75134619 ATAATAAAATAATAATA
1 ATAATAAAATAATAAAA
75134636 ATAATAAA
1 ATAATAAA
75134644 CTCAATGATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 4 0.17
17 19 0.83
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
ATAATAAAATAATAAAA
Found at i:75134739 original size:23 final size:21
Alignment explanation
Indices: 75134689--75134744 Score: 51
Period size: 22 Copynumber: 2.5 Consensus size: 21
75134679 ATGATAATAG
75134689 TAAAAAAAATACGAAAGAAAA
1 TAAAAAAAATACGAAAGAAAA
*
75134710 AAGAAAAAAATA-GAAATAGCAAAA
1 TA-AAAAAAATACG-AA-AG-AAAA
*
75134734 TAAAAATAATA
1 TAAAAAAAATA
75134745 AAAGTATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 2 0.07
22 11 0.39
23 10 0.36
24 5 0.18
ACGTcount: A:0.75, C:0.04, G:0.09, T:0.12
Consensus pattern (21 bp):
TAAAAAAAATACGAAAGAAAA
Found at i:75134774 original size:17 final size:17
Alignment explanation
Indices: 75134733--75134787 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
75134723 AAATAGCAAA
*
75134733 ATAAAAATAA-TAAAAGT
1 ATAAAAAAAATTAAAA-T
*
75134750 ATATAAAAAATTAAAAT
1 ATAAAAAAAATTAAAAT
*
75134767 ATAAAAAAAATTAAAAA
1 ATAAAAAAAATTAAAAT
75134784 ATAA
1 ATAA
75134788 GTATATGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 28 0.85
18 5 0.15
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (17 bp):
ATAAAAAAAATTAAAAT
Found at i:75134873 original size:19 final size:20
Alignment explanation
Indices: 75134827--75134874 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
75134817 TAATTAGTAT
*
75134827 AATAAAA-AAATAATATAAC
1 AATAAAATAAATAAAATAAC
75134846 AATTAAAAATAAATAAAATAA-
1 AA-T-AAAATAAATAAAATAAC
75134867 AATAAAAT
1 AATAAAAT
75134875 TAGGGTGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
19 7 0.28
20 2 0.08
21 6 0.24
22 10 0.40
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (20 bp):
AATAAAATAAATAAAATAAC
Found at i:75134875 original size:26 final size:26
Alignment explanation
Indices: 75134827--75134876 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
75134817 TAATTAGTAT
*
75134827 AATAAAAAAATAATATAACAATTAAA
1 AATAAAAAAATAAAATAACAATTAAA
75134853 AATAAATAAAATAAAATAA-AATTA
1 AATAAA-AAAATAAAATAACAATTA
75134877 GGGTGATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (26 bp):
AATAAAAAAATAAAATAACAATTAAA
Found at i:75135236 original size:30 final size:30
Alignment explanation
Indices: 75135200--75135256 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
75135190 TGTGAGATCC
* *
75135200 CACACACCCGTGTGGCCAGGCCGTGTGCTT
1 CACACACCCATGTGGCCAGGCCATGTGCTT
75135230 CACACACCCATGTGGCCAGGCCATGTG
1 CACACACCCATGTGGCCAGGCCATGTG
75135257 GGTCAAAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.18, C:0.37, G:0.28, T:0.18
Consensus pattern (30 bp):
CACACACCCATGTGGCCAGGCCATGTGCTT
Found at i:75139282 original size:30 final size:30
Alignment explanation
Indices: 75139246--75139302 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
75139236 CACGGACTGG
*
75139246 CACATGGGCATGTGGCCAGCCCGTGTGACT
1 CACATGGGCATGTGGCCAGCCAGTGTGACT
*
75139276 CACATGGGCGTGTGGCCAGCCAGTGTG
1 CACATGGGCATGTGGCCAGCCAGTGTG
75139303 GAAATGCGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.16, C:0.28, G:0.37, T:0.19
Consensus pattern (30 bp):
CACATGGGCATGTGGCCAGCCAGTGTGACT
Found at i:75145563 original size:31 final size:31
Alignment explanation
Indices: 75145526--75145606 Score: 101
Period size: 31 Copynumber: 2.6 Consensus size: 31
75145516 AGTGTTTAAG
* * *
75145526 AATTAATAGAGGTATTTTAAGTAGTATAAAT
1 AATTAATAGAGGTATTTTAAATAATATAAAA
75145557 AATTAATA-AGGGTATTTTAAATAATATAAAA
1 AATTAATAGA-GGTATTTTAAATAATATAAAA
* *
75145588 AAATAATAGAGATATTTTA
1 AATTAATAGAGGTATTTTA
75145607 TGTTGATTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
30 1 0.02
31 41 0.95
32 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (31 bp):
AATTAATAGAGGTATTTTAAATAATATAAAA
Found at i:75147121 original size:34 final size:34
Alignment explanation
Indices: 75147082--75147151 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
75147072 GTAACAAAAA
75147082 AAGATAAATTTGAATAGTTAAATGACAATTTTGT
1 AAGATAAATTTGAATAGTTAAATGACAATTTTGT
75147116 AAGATAAATTTGAATAGTTAAATGACAATTTTGT
1 AAGATAAATTTGAATAGTTAAATGACAATTTTGT
75147150 AA
1 AA
75147152 CTTTTCATAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.46, C:0.03, G:0.14, T:0.37
Consensus pattern (34 bp):
AAGATAAATTTGAATAGTTAAATGACAATTTTGT
Found at i:75147755 original size:22 final size:22
Alignment explanation
Indices: 75147712--75147755 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
75147702 TTAACTTTTT
*
75147712 GTAAAAAAATTTAAACTCTATAA
1 GTAAAAAAATTTAAAC-ATATAA
75147735 GTAAAAAAATTATAAA-ATATA
1 GTAAAAAAATT-TAAACATATA
75147756 GTGTAACCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.30
Consensus pattern (22 bp):
GTAAAAAAATTTAAACATATAA
Found at i:75151175 original size:25 final size:25
Alignment explanation
Indices: 75151146--75151212 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
75151136 TACCGATTTT
*
75151146 AGCTCTTATGAGCTTACCATTACTC
1 AGCTCGTATGAGCTTACCATTACTC
*
75151171 AGCTCGTATGAGCTTACCATTATTC
1 AGCTCGTATGAGCTTACCATTACTC
* * *
75151196 AGTTCGGAGGAGCTTAC
1 AGCTCGTATGAGCTTAC
75151213 GTTATTCAGC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (25 bp):
AGCTCGTATGAGCTTACCATTACTC
Found at i:75151232 original size:24 final size:24
Alignment explanation
Indices: 75151155--75151238 Score: 80
Period size: 25 Copynumber: 3.4 Consensus size: 24
75151145 TAGCTCTTAT
* * * *
75151155 GAGCTTACCATTACTCAGCTCGTAT
1 GAGCTTA-CATTATTCAGTTCGGAA
*
75151180 GAGCTTACCATTATTCAGTTCGGAG
1 GAGCTTA-CATTATTCAGTTCGGAA
*
75151205 GAGCTTACGTTATTCAGCTT-GGAA
1 GAGCTTACATTATTCAG-TTCGGAA
75151229 GAGCTTACAT
1 GAGCTTACAT
75151239 GAGATATATG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
24 21 0.41
25 30 0.59
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (24 bp):
GAGCTTACATTATTCAGTTCGGAA
Found at i:75158467 original size:25 final size:23
Alignment explanation
Indices: 75158443--75158492 Score: 77
Period size: 21 Copynumber: 2.3 Consensus size: 23
75158433 ATTTATTTAA
75158443 ATAATTAATTCATTATTTACC-T
1 ATAATTAATTCATTATTTACCTT
75158465 -TAATTAATTCATTATTTACCTT
1 ATAATTAATTCATTATTTACCTT
*
75158487 ACAATT
1 ATAATT
75158493 GTAATGCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 20 0.80
22 1 0.04
23 4 0.16
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (23 bp):
ATAATTAATTCATTATTTACCTT
Found at i:75158470 original size:21 final size:21
Alignment explanation
Indices: 75158444--75158487 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
75158434 TTTATTTAAA
75158444 TAATTAATTCATTATTTACCT
1 TAATTAATTCATTATTTACCT
75158465 TAATTAATTCATTATTTACCT
1 TAATTAATTCATTATTTACCT
75158486 TA
1 TA
75158488 CAATTGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (21 bp):
TAATTAATTCATTATTTACCT
Found at i:75159495 original size:10 final size:10
Alignment explanation
Indices: 75159477--75159523 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
75159467 CAAATATGTC
75159477 AAAAA-TAAT
1 AAAAATTAAT
75159486 AAAAATTAAT
1 AAAAATTAAT
*
75159496 CAAAATTAATT
1 AAAAATTAA-T
75159507 ATAAAATTAAT
1 A-AAAATTAAT
*
75159518 TAAAAT
1 AAAAAT
75159524 GCAACATGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
9 5 0.16
10 17 0.53
11 2 0.06
12 8 0.25
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (10 bp):
AAAAATTAAT
Found at i:75159515 original size:22 final size:20
Alignment explanation
Indices: 75159475--75159523 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 20
75159465 TGCAAATATG
*
75159475 TCAAAAATAATAAAAATTAA
1 TCAAAATTAATAAAAATTAA
75159495 TCAAAATTAATTATAAAATTAA
1 TCAAAATTAA-TA-AAAATTAA
*
75159517 TTAAAAT
1 TCAAAAT
75159524 GCAACATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 9 0.36
21 2 0.08
22 14 0.56
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (20 bp):
TCAAAATTAATAAAAATTAA
Found at i:75161552 original size:25 final size:24
Alignment explanation
Indices: 75161515--75161629 Score: 99
Period size: 25 Copynumber: 4.7 Consensus size: 24
75161505 GGTTAAAGAT
*
75161515 TTCAGCTCTTATGAGCTTATCGTTA
1 TTCAGCTCGTATGAGCTTA-CGTTA
*
75161540 CTCAGCTCGTATGAGCTTACTGTTA
1 TTCAGCTCGTATGAGCTTAC-GTTA
* *
75161565 TTCAGCTTAG-AGGAGCTTACCGTTA
1 TTCAGC-TCGTATGAGCTTA-CGTTA
* *
75161590 TTCATCTCGTAAGAGCTTACAGTT-
1 TTCAGCTCGTATGAGCTTAC-GTTA
* *
75161614 TACAGCTCATATGAGC
1 TTCAGCTCGTATGAGC
75161630 ATACATGTAC
Statistics
Matches: 73, Mismatches: 12, Indels: 11
0.76 0.12 0.11
Matches are distributed among these distances:
24 16 0.22
25 54 0.74
26 3 0.04
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (24 bp):
TTCAGCTCGTATGAGCTTACGTTA
Found at i:75164945 original size:12 final size:12
Alignment explanation
Indices: 75164912--75164945 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
75164902 TCAAGCCACA
75164912 AGCCTGTGTGCT
1 AGCCTGTGTGCT
*
75164924 AGCCTATGTGCT
1 AGCCTGTGTGCT
*
75164936 AGGCTGTGTG
1 AGCCTGTGTG
75164946 ATTAATTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.21, G:0.35, T:0.32
Consensus pattern (12 bp):
AGCCTGTGTGCT
Found at i:75169887 original size:39 final size:39
Alignment explanation
Indices: 75169842--75169919 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
75169832 TTTAGTGAAA
75169842 ATGCAAAATAGGGATTAAATTGAGAAATGTTGAAACTTT
1 ATGCAAAATAGGGATTAAATTGAGAAATGTTGAAACTTT
75169881 ATGCAAAATAGGGATTAAATTGAGAAATGTTGAAACTTT
1 ATGCAAAATAGGGATTAAATTGAGAAATGTTGAAACTTT
75169920 GTGATTAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (39 bp):
ATGCAAAATAGGGATTAAATTGAGAAATGTTGAAACTTT
Found at i:75173062 original size:28 final size:29
Alignment explanation
Indices: 75172995--75173095 Score: 125
Period size: 28 Copynumber: 3.5 Consensus size: 29
75172985 ATAGTGAATC
*
75172995 CGCACACTTAGTGCTATATACATTC-AGCT
1 CGCACACTTAGTGCTATATA-ATTCAAACT
75173024 CGCACACTTAGTGCTATATAA-TCAAACT
1 CGCACACTTAGTGCTATATAATTCAAACT
* * * *
75173052 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA-TTCAAACT
75173082 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75173096 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.03
28 23 0.36
29 20 0.31
30 19 0.30
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATATAATTCAAACT
Found at i:75185995 original size:29 final size:29
Alignment explanation
Indices: 75185971--75186064 Score: 179
Period size: 29 Copynumber: 3.2 Consensus size: 29
75185961 TCGCACACCC
*
75185971 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
75186000 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
75186029 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
75186058 AGTGCCA
1 AGTGCCA
75186065 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 64 1.00
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.30
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:75185996 original size:58 final size:58
Alignment explanation
Indices: 75185934--75186064 Score: 174
Period size: 58 Copynumber: 2.3 Consensus size: 58
75185924 ATTTAAGCCC
* * * *
75185934 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * **
75185992 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
75186050 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
75186065 ATCTCGTCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
58 63 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:75195269 original size:13 final size:13
Alignment explanation
Indices: 75195253--75195285 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
75195243 TTTGATTAAA
*
75195253 TTAGTTAATTAGT
1 TTAGATAATTAGT
75195266 TTAGATAATTAGT
1 TTAGATAATTAGT
75195279 TTA-ATAA
1 TTAGATAA
75195286 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:75200692 original size:6 final size:6
Alignment explanation
Indices: 75200681--75200714 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
75200671 CCTCTTATTT
* *
75200681 TTTTTA TTTTTA TTTTTA TGTTTA TGTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
75200715 CGTTATAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:75203315 original size:13 final size:13
Alignment explanation
Indices: 75203299--75203331 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
75203289 TTTGATTAAA
75203299 TTAGATAATTAGT
1 TTAGATAATTAGT
75203312 TTAGATAATTAGT
1 TTAGATAATTAGT
75203325 TTA-ATAA
1 TTAGATAA
75203332 ACAAACCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.45
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:75208775 original size:30 final size:30
Alignment explanation
Indices: 75208720--75208850 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
75208710 ATAGTGAATC
*
75208720 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
75208749 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
75208779 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
75208807 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
75208837 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75208851 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:75208830 original size:58 final size:58
Alignment explanation
Indices: 75208719--75208850 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
75208709 TATAGTGAAT
* * * * *
75208719 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
75208778 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
75208836 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
75208851 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:75216727 original size:30 final size:30
Alignment explanation
Indices: 75216672--75216802 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
75216662 ATAGTGAATC
*
75216672 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
75216701 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
75216731 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
75216759 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
75216789 CGCACACTTAGTGC
1 CGCACACTTAGTGC
75216803 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:75216782 original size:58 final size:58
Alignment explanation
Indices: 75216671--75216802 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
75216661 TATAGTGAAT
* * * * *
75216671 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
75216730 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
75216788 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
75216803 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:75223345 original size:18 final size:18
Alignment explanation
Indices: 75223322--75223382 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 18
75223312 AAATTTCCCT
75223322 TTTCTTTTTCTTTCTTTA
1 TTTCTTTTTCTTTCTTTA
75223340 TTTCTTTTTC--TC-TT-
1 TTTCTTTTTCTTTCTTTA
*
75223354 TTTC-TTTTCTTTCTCTA
1 TTTCTTTTTCTTTCTTTA
*
75223371 -TTCTTATTCTTT
1 TTTCTTTTTCTTT
75223383 TGTTTTGTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
13 5 0.14
14 4 0.11
15 4 0.11
16 6 0.17
17 7 0.19
18 10 0.28
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTCTTTTTCTTTCTTTA
Found at i:75223362 original size:31 final size:31
Alignment explanation
Indices: 75223321--75223380 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
75223311 TAAATTTCCC
* *
75223321 TTTTCTTTTTCTTTCTTTATTTCTTTTTCTCT
1 TTTTCTTTTTCTTTCTCTA-TTCTTATTCTCT
75223353 TTTTC-TTTTCTTTCTCTATTCTTATTCT
1 TTTTCTTTTTCTTTCTCTATTCTTATTCT
75223381 TTTGTTTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
31 12 0.46
32 5 0.19
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (31 bp):
TTTTCTTTTTCTTTCTCTATTCTTATTCTCT
Found at i:75225838 original size:41 final size:41
Alignment explanation
Indices: 75225767--75225847 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 41
75225757 CTACAGGGGT
*
75225767 TTTCACATGGCCTCGTACACGCCCGTGTCCTTGGCCCGTGTC
1 TTTCACATGGCCTCGTACACGCCCGTGTCC-TAGCCCGTGTC
*
75225809 TTTCACATGGCCAT-G-ACACG-CTGATGTCCTAGCCCGTGT
1 TTTCACATGGCC-TCGTACACGCCCG-TGTCCTAGCCCGTGT
75225848 GCAAAAACAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
40 11 0.31
41 10 0.29
42 13 0.37
43 1 0.03
ACGTcount: A:0.14, C:0.35, G:0.23, T:0.28
Consensus pattern (41 bp):
TTTCACATGGCCTCGTACACGCCCGTGTCCTAGCCCGTGTC
Found at i:75226970 original size:46 final size:44
Alignment explanation
Indices: 75226889--75227056 Score: 147
Period size: 46 Copynumber: 3.6 Consensus size: 44
75226879 CGTAGTCAAT
* *
75226889 GCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGTCGAA
1 GCATGTCCCAGACATGTCTTACACTAGCCT-CGTCTTGAGG-CGAA
** * *
75226935 GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCCAA
1 GCATGTCCCAGACATGTCTTACACTAGC-CTCGTCTTGAGGCGAA
* * * ** * *
75226980 TTCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGAT
1 --GCATGTCCCAGACAT-GTCTTACACTAGC-CTCGTCTTGAGGC-GAA
75227029 GCATGTCCCAGACATGTCTTACACTAGC
1 GCATGTCCCAGACATGTCTTACACTAGC
75227057 TCACACAAGT
Statistics
Matches: 97, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
45 3 0.03
46 46 0.47
47 29 0.30
48 18 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (44 bp):
GCATGTCCCAGACATGTCTTACACTAGCCTCGTCTTGAGGCGAA
Found at i:75234134 original size:46 final size:47
Alignment explanation
Indices: 75234001--75234219 Score: 170
Period size: 46 Copynumber: 4.7 Consensus size: 47
75233991 GCATATCTGT
*
75234001 GCTG-ATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTA-
1 GCTGAATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCATCTCG-AG
* * * *
75234047 GCCG-ATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTCGAG
1 GCTGAATGCATGTCCCAGACATGTCTTACACTAGCACT-CATCTCGAG
* * *
75234093 GCTGAA-GCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCTGAATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAG
* * * * *
75234139 GC-CAATGTCATGTCCCAGACATGGTTTTACACTAGCTCTCATAAT-GTG
1 GCTGAATG-CATGTCCCAGACAT-GTCTTACACTAGCACTCAT-CTCGAG
* *
75234187 GCT-AATTCATGTCCCAAACATGTCTTACACTAG
1 GCTGAATGCATGTCCCAGACATGTCTTACACTAG
75234220 ATCACACAAG
Statistics
Matches: 142, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
44 10 0.07
45 18 0.13
46 63 0.44
47 29 0.20
48 21 0.15
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GCTGAATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGAG
Found at i:75234201 original size:94 final size:91
Alignment explanation
Indices: 75233950--75234225 Score: 256
Period size: 94 Copynumber: 2.9 Consensus size: 91
75233940 TGGGGTCAGG
* * * *
75233950 TGCCAATGCCATGTCCCAGACATGGTCTTACACAAGTTCTAGCATATCTGTGCTGATGCCATGTC
1 TGCCAATG-CATGTCCCAGACATGGTCTTACACTAGCTCTA-CATATGTG-GCTAAT-CCATGTC
*
75234015 CCAGACATGGTCTTACACT-GACACATCTCG
62 CCAGACAT-GTCTTACACTAGACACATCTCA
* * * * * *
75234045 TAGCCGATGCATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGCTGAA-GCATGTCC
1 T-GCCAATGCATGTCCCAGACATGGTCTTACACTAGCTCTACATAT-GTGGCT-AATCCATGTCC
* *
75234107 CAGACATGTCTTACACTAGCACTCGTCTCAA
63 CAGACATGTCTTACACTAG-ACACATCTC-A
* *
75234138 TGCCAATGTCATGTCCCAGACATGGTTTTACACTAGCTCT-CATAATGTGGCTAATTCATGTCCC
1 TGCCAATG-CATGTCCCAGACATGGTCTTACACTAGCTCTACAT-ATGTGGCTAATCCATGTCCC
*
75234202 AAACATGTCTTACACTAGATCACA
64 AGACATGTCTTACACTAGA-CACA
75234226 CAAGTGATCC
Statistics
Matches: 146, Mismatches: 23, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
90 10 0.07
91 15 0.10
92 19 0.13
93 22 0.15
94 57 0.39
95 17 0.12
96 6 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (91 bp):
TGCCAATGCATGTCCCAGACATGGTCTTACACTAGCTCTACATATGTGGCTAATCCATGTCCCAG
ACATGTCTTACACTAGACACATCTCA
Found at i:75236877 original size:3 final size:3
Alignment explanation
Indices: 75236869--75236909 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
75236859 AAATTAAGAA
75236869 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
75236910 AGCAACTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:75236961 original size:12 final size:12
Alignment explanation
Indices: 75236946--75236993 Score: 55
Period size: 12 Copynumber: 4.0 Consensus size: 12
75236936 AGATAAATAG
75236946 AAATAAAATAAA
1 AAATAAAATAAA
75236958 AAATAAAAT--A
1 AAATAAAATAAA
*
75236968 AAATGAAAAGAAA
1 AAAT-AAAATAAA
75236981 AAATAATAATAAA
1 AAATAA-AATAAA
75236994 CTCAATGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
10 5 0.17
11 4 0.13
12 11 0.37
13 10 0.33
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (12 bp):
AAATAAAATAAA
Found at i:75236966 original size:23 final size:23
Alignment explanation
Indices: 75236940--75236993 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
75236930 AAACAAAGAT
*
75236940 AAATAGAAAT-AAAATAAAAAATA
1 AAATA-AAATGAAAAGAAAAAATA
75236963 AAATAAAATGAAAAGAAAAAATA
1 AAATAAAATGAAAAGAAAAAATA
75236986 ATAATAAA
1 A-AATAAA
75236994 CTCAATGATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 18 0.64
24 6 0.21
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (23 bp):
AAATAAAATGAAAAGAAAAAATA
Found at i:75237165 original size:22 final size:22
Alignment explanation
Indices: 75237135--75237177 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
75237125 AAAATTAGTA
* *
75237135 AAATGATAATAAATAATATAAC
1 AAATAATAATAAATAAAATAAC
75237157 AAATAATAATAAATAAAATAA
1 AAATAATAATAAATAAAATAA
75237178 AATAAAAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (22 bp):
AAATAATAATAAATAAAATAAC
Found at i:75237180 original size:10 final size:9
Alignment explanation
Indices: 75237109--75237184 Score: 50
Period size: 10 Copynumber: 8.2 Consensus size: 9
75237099 GTATAAGAAT
75237109 AATAAAT-A
1 AATAAATAA
75237117 AATAGAATAA
1 AATA-AATAA
* *
75237127 AATTAGTAA
1 AATAAATAA
75237136 AATGATAAT-A
1 AAT-A-AATAA
*
75237146 AAT-AATAT
1 AATAAATAA
*
75237154 AACAAATAA
1 AATAAATAA
75237163 TAATAAATAA
1 -AATAAATAA
75237173 AATAAAATAA
1 AAT-AAATAA
75237183 AA
1 AA
75237185 GGGGGTGGCT
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
7 3 0.06
8 6 0.12
9 17 0.33
10 24 0.46
11 2 0.04
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.25
Consensus pattern (9 bp):
AATAAATAA
Found at i:75240592 original size:14 final size:14
Alignment explanation
Indices: 75240573--75240599 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75240563 AGAAGCAAAT
75240573 AAAACAAAAATTAG
1 AAAACAAAAATTAG
75240587 AAAACAAAAATTA
1 AAAACAAAAATTA
75240600 AACTAAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.07, G:0.04, T:0.15
Consensus pattern (14 bp):
AAAACAAAAATTAG
Found at i:75253756 original size:13 final size:13
Alignment explanation
Indices: 75253724--75253765 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
75253714 TCATACGGGT
75253724 TAATAA-ATAAAA
1 TAATAATATAAAA
75253736 TAATAATA-AAAA
1 TAATAATATAAAA
75253748 TATATAATATAAAA
1 TA-ATAATATAAAA
75253762 -AATA
1 TAATA
75253766 GGCAATAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.56
13 8 0.30
14 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
TAATAATATAAAA
Found at i:75254444 original size:32 final size:33
Alignment explanation
Indices: 75254385--75254448 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
75254375 CTATGGGCCA
75254385 TACTGTTATCTGAAAAGGGGCTAAGGCCCAGTT
1 TACTGTTATCTGAAAAGGGGCTAAGGCCCAGTT
*
75254418 TACTG-TATTCTGAAAA-GGGCTTAGGCCCAGT
1 TACTGTTA-TCTGAAAAGGGGCTAAGGCCCAGT
75254449 ACCCGCTGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (33 bp):
TACTGTTATCTGAAAAGGGGCTAAGGCCCAGTT
Found at i:75256155 original size:14 final size:14
Alignment explanation
Indices: 75256136--75256165 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
75256126 CTTGATAGAT
75256136 GTTTCTTTACTTTG
1 GTTTCTTTACTTTG
75256150 GTTTCTTTACTTTG
1 GTTTCTTTACTTTG
75256164 GT
1 GT
75256166 AATTAGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.17, T:0.63
Consensus pattern (14 bp):
GTTTCTTTACTTTG
Found at i:75257629 original size:40 final size:40
Alignment explanation
Indices: 75257574--75257801 Score: 359
Period size: 40 Copynumber: 5.7 Consensus size: 40
75257564 ATAACCACAA
* *
75257574 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
75257614 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAACAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
75257654 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
75257694 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* *
75257734 GCACAAATGCCTTCGGGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
75257774 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
75257802 GTATCATTCA
Statistics
Matches: 176, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 174 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:75265199 original size:40 final size:40
Alignment explanation
Indices: 75265154--75265301 Score: 208
Period size: 40 Copynumber: 3.7 Consensus size: 40
75265144 ATAACCACAA
* *
75265154 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
75265194 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
* * *
75265234 GCACAAATGCCTTCGAGTCTTAACCCGGATATAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAT-AGCAACTC
* * *
75265274 GCATAAATGCCTTCGGGGCTTAGCCCGG
1 GCACAAATGCCTTCGGGTCTTAACCCGG
75265302 GTATCATTCA
Statistics
Matches: 98, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
40 96 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTC
Found at i:75268828 original size:13 final size:13
Alignment explanation
Indices: 75268796--75268837 Score: 54
Period size: 12 Copynumber: 3.4 Consensus size: 13
75268786 TCATATGGGT
75268796 TAATAA-ATAAAA
1 TAATAATATAAAA
75268808 TAATAATA-AAAA
1 TAATAATATAAAA
75268820 TATATAATATAAAA
1 TA-ATAATATAAAA
75268834 -AATA
1 TAATA
75268838 GGCAATAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 15 0.56
13 8 0.30
14 4 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
TAATAATATAAAA
Found at i:75270613 original size:15 final size:16
Alignment explanation
Indices: 75270565--75270613 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
75270555 TTTGTAGACG
*
75270565 TTGATTAAAAGCTCAAA
1 TTGATTAAAAGATC-AA
*
75270582 TTGATTAGAA-ATCAA
1 TTGATTAAAAGATCAA
75270597 TTGATTAAAAGAT-AA
1 TTGATTAAAAGATCAA
75270612 TT
1 TT
75270614 TTAAAAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 15 0.54
16 4 0.14
17 9 0.32
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.35
Consensus pattern (16 bp):
TTGATTAAAAGATCAA
Found at i:75274751 original size:15 final size:14
Alignment explanation
Indices: 75274711--75274752 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
75274701 TTTAATGTAA
75274711 TTTAATTAA-ATAT
1 TTTAATTAATATAT
*
75274724 TTT-ATTGATATAT
1 TTTAATTAATATAT
75274737 TTTAATTTAATATAT
1 TTTAA-TTAATATAT
75274752 T
1 T
75274753 ATATTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 4 0.17
13 10 0.42
14 1 0.04
15 9 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (14 bp):
TTTAATTAATATAT
Found at i:75274770 original size:35 final size:35
Alignment explanation
Indices: 75274697--75274763 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 35
75274687 GAATTTTTTT
*
75274697 TATATTTAATGTAATTTAATTAAATATTTTATTGA
1 TATATTTAATGTAATATAATTAAATATTTTATTGA
* * *
75274732 TATATTTTAATTTAATAT-ATTATATTTTTTAT
1 TATA-TTTAATGTAATATAATTAAATATTTTAT
75274764 ATATATAGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 16 0.59
36 11 0.41
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (35 bp):
TATATTTAATGTAATATAATTAAATATTTTATTGA
Found at i:75278033 original size:17 final size:17
Alignment explanation
Indices: 75278011--75278044 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
75278001 TATTCAATTC
75278011 AATCTAGAAATCATATT
1 AATCTAGAAATCATATT
75278028 AATCTAGAAATCATATT
1 AATCTAGAAATCATATT
75278045 TTTTATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (17 bp):
AATCTAGAAATCATATT
Found at i:75283719 original size:40 final size:40
Alignment explanation
Indices: 75283626--75283841 Score: 275
Period size: 40 Copynumber: 5.5 Consensus size: 40
75283616 AAGCCAAGTA
* * *
75283626 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
75283664 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75283704 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75283744 CCTTCGGGACTTAG-CCGG-TGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75283782 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
75283823 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75283842 TTATCATCCA
Statistics
Matches: 159, Mismatches: 11, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
38 44 0.28
39 25 0.16
40 62 0.39
41 24 0.15
42 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75283776 original size:78 final size:78
Alignment explanation
Indices: 75283626--75283838 Score: 265
Period size: 78 Copynumber: 2.7 Consensus size: 78
75283616 AAGCCAAGTA
* * * * *
75283626 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAG-CCGGATATAA
*
75283689 TAACTCGCACCAATG
64 TAACTCGCACAAATG
*
75283704 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCGG-TGTAAT
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAAT
75283768 AACTCGCACAAATG
65 AACTCGCACAAATG
75283782 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATGCCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACT--CGCACAAATGCCTTCGGGACTTAGCC
75283839 CGGTTATCAT
Statistics
Matches: 121, Mismatches: 8, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
77 1 0.01
78 57 0.47
79 42 0.35
80 21 0.17
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (78 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCGGATATAATA
ACTCGCACAAATG
Found at i:75291847 original size:40 final size:40
Alignment explanation
Indices: 75291754--75291971 Score: 293
Period size: 40 Copynumber: 5.5 Consensus size: 40
75291744 AAGCCAAGTA
* * *
75291754 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
75291792 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75291832 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75291872 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
75291912 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
75291953 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
75291972 TTATCATCCA
Statistics
Matches: 163, Mismatches: 11, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
38 12 0.07
39 17 0.10
40 106 0.65
41 24 0.15
42 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75293792 original size:43 final size:43
Alignment explanation
Indices: 75293731--75293873 Score: 198
Period size: 43 Copynumber: 3.3 Consensus size: 43
75293721 GGCTGTCACA
*
75293731 TAAGACCATGTTTGGGACATTGGCATCG-TACTGTGATTACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTACATG
* * *
75293774 TAAGACCATGTCTGGGACATTGGCATCGTTATATGATTCCATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACATG
* * *
75293817 TAAGACCATGTCTGGGATATTGGCATCGATATGAGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACATG
*
75293860 TAAGACCATATCTG
1 TAAGACCATGTCTG
75293874 AGATATGGCA
Statistics
Matches: 89, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
43 87 0.98
44 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGATATGTGATTACATG
Found at i:75293879 original size:43 final size:42
Alignment explanation
Indices: 75293731--75293892 Score: 193
Period size: 43 Copynumber: 3.8 Consensus size: 42
75293721 GGCTGTCACA
* *
75293731 TAAGACCATGTTTGGGACATTGGCATCGTACTGTGATTACATG
1 TAAGACCATGTCTGGGACATTGGCATCGTA-TGAGATTACATG
*
75293774 TAAGACCATGTCTGGGACATTGGCATCGTTAT-ATGATTCCATG
1 TAAGACCATGTCTGGGACATTGGCATCG-TATGA-GATTACATG
* *
75293817 TAAGACCATGTCTGGGATATTGGCATCGATATGAGATAACATG
1 TAAGACCATGTCTGGGACATTGGCATCG-TATGAGATTACATG
* * * *
75293860 TAAGACCATATCTGAGATA-TGGCATTGTATGAG
1 TAAGACCATGTCTGGGACATTGGCATCGTATGAG
75293893 TTTATGTGAT
Statistics
Matches: 106, Mismatches: 10, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
41 6 0.06
42 7 0.07
43 90 0.85
44 3 0.03
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATCGTATGAGATTACATG
Found at i:75295097 original size:21 final size:18
Alignment explanation
Indices: 75295059--75295111 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
75295049 GGAAGAATAA
75295059 AGAAATGAAAAAAAAAAG
1 AGAAATGAAAAAAAAAAG
75295077 AGAATATGAAGAAAAACAAAG
1 AGAA-ATGAA-AAAAA-AAAG
75295098 A-AAA-GAAAAAAAAA
1 AGAAATGAAAAAAAAA
75295112 GTGTTCATTC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
16 2 0.06
17 5 0.16
18 7 0.22
19 6 0.19
20 7 0.22
21 5 0.16
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (18 bp):
AGAAATGAAAAAAAAAAG
Done.