Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 244 of 325
Found at i:76444418 original size:7 final size:6
Alignment explanation
Indices: 76444325--76444435 Score: 60
Period size: 6 Copynumber: 17.0 Consensus size: 6
76444315 ATAAATAATT
* *
76444325 AAATAA AAATAA AATATAA CAAATTAC AAATGACA ATAATAA TAATAA
1 AAATAA AAATAA AA-ATAA -AAA-TAA AAAT-A-A A-AATAA AAATAA
* * * * * *
76444373 TAATAA CATAATAG AAATAA TAATAA TAATAA TAATAA AGAATAA AAATAG
1 AAATAA -A-AATAA AAATAA AAATAA AAATAA AAATAA A-AATAA AAATAA
*
76444424 TAATAA AAATAA
1 AAATAA AAATAA
76444436 TATTAATAGT
Statistics
Matches: 84, Mismatches: 12, Indels: 18
0.74 0.11 0.16
Matches are distributed among these distances:
6 54 0.64
7 17 0.20
8 10 0.12
9 3 0.04
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.24
Consensus pattern (6 bp):
AAATAA
Found at i:76446278 original size:183 final size:183
Alignment explanation
Indices: 76445935--76446278 Score: 472
Period size: 183 Copynumber: 1.9 Consensus size: 183
76445925 AGGTTTAATT
* * * * * *
76445935 CGACCTACTGCAGCTTTAGAGGTATAGGACTTGTTGCCTTAATCCGCTCCACTGTAACTTCAGGG
1 CGACCTACTGCAACTTCAGAGGTATAGGACTCGTCGCCTTAATACGCTCCACTGCAACTTCAGGG
* * * **
76446000 AGATAGGATTAGCTGTCTTCATTCTGCTCTGCTACAACTTTAGGGAGAGAAGACTTGTGGCTTCA
66 AGATAGGATTAGCTGTCTTCAGTCTGCTCTGCTACAACTTCAAGGAGAGAAGACTTGTAACTTCA
* * * *
76446065 ATCTGCTCCACTGCAACTTTAGGAAGATAAGATTTTCCATGAGAGATTTGATC
131 ACCTACTCCACTACAACTTCAGGAAGATAAGATTTTCCATGAGAGATTTGATC
**
76446118 CGACCTACTGCAACTTCAGAGGTATAGGACTCGTCGTTTTAATACGCTCCACTGCAACTTCAGGG
1 CGACCTACTGCAACTTCAGAGGTATAGGACTCGTCGCCTTAATACGCTCCACTGCAACTTCAGGG
* * * * *
76446183 AGATAGGATTAGCTTTCTTCAGTCTGCTCTGCTGCAACTTCAAGGAGATAAGACTTGTAATTTTA
66 AGATAGGATTAGCTGTCTTCAGTCTGCTCTGCTACAACTTCAAGGAGAGAAGACTTGTAACTTCA
* *
76446248 ACCTACTCCATTACAACTTCAGGGAGATAAG
131 ACCTACTCCACTACAACTTCAGGAAGATAAG
76446279 GTTTGTTTTG
Statistics
Matches: 137, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
183 137 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (183 bp):
CGACCTACTGCAACTTCAGAGGTATAGGACTCGTCGCCTTAATACGCTCCACTGCAACTTCAGGG
AGATAGGATTAGCTGTCTTCAGTCTGCTCTGCTACAACTTCAAGGAGAGAAGACTTGTAACTTCA
ACCTACTCCACTACAACTTCAGGAAGATAAGATTTTCCATGAGAGATTTGATC
Found at i:76447282 original size:3 final size:3
Alignment explanation
Indices: 76447261--76447300 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
76447251 CCTTTCCATT
* *
76447261 TTC TTA TTC TTC TTA TTC TTC TTC TTC TTC TTC TT- TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
76447301 GGAAAAGTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.05, C:0.25, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:76452698 original size:17 final size:17
Alignment explanation
Indices: 76452637--76452698 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
76452627 AAACAAGGCT
76452637 AACAATATAAAAA-TATA
1 AACAA-ATAAAAAGTATA
* *
76452654 AATAAATAAACAAGTAAA
1 AACAAATAAA-AAGTATA
* * *
76452672 AACTATTAAAAAGTTTA
1 AACAAATAAAAAGTATA
76452689 AACAAATAAA
1 AACAAATAAA
76452699 TAAAAAATGA
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
16 5 0.15
17 19 0.56
18 10 0.29
ACGTcount: A:0.68, C:0.06, G:0.03, T:0.23
Consensus pattern (17 bp):
AACAAATAAAAAGTATA
Found at i:76452701 original size:4 final size:4
Alignment explanation
Indices: 76452687--76452741 Score: 51
Period size: 4 Copynumber: 14.0 Consensus size: 4
76452677 TTAAAAAGTT
* * * *
76452687 TAAA CAAA TAAA TAAA -AAA TGAAA TAAG CAAA TAAA TAAG TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
76452735 -AAA TAAA
1 TAAA TAAA
76452742 ATATAACAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
3 6 0.15
4 30 0.75
5 4 0.10
ACGTcount: A:0.73, C:0.04, G:0.05, T:0.18
Consensus pattern (4 bp):
TAAA
Found at i:76452769 original size:3 final size:3
Alignment explanation
Indices: 76452761--76452883 Score: 93
Period size: 3 Copynumber: 40.0 Consensus size: 3
76452751 ATTACAAATG
* * * * * *
76452761 ATA ATA ATA ATA ATA ACA ATA ATA ACAA AGA ACA AAA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA
* * * * * *
76452807 AAA ATA ATA TTA ACA GTA ATA ATA ATG GTA ATA ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
* *
76452853 ATAA ATA ATA ATA ATA ATA GTA ACA ATA ATA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
76452884 TATTAAATTA
Statistics
Matches: 92, Mismatches: 25, Indels: 6
0.75 0.20 0.05
Matches are distributed among these distances:
3 84 0.91
4 8 0.09
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (3 bp):
ATA
Found at i:76452848 original size:16 final size:14
Alignment explanation
Indices: 76452835--76452869 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
76452825 ATAATAATGG
76452835 TAATAATAAATAA-
1 TAATAATAAATAAT
76452848 TAATAATAAATAA-
1 TAATAATAAATAAT
76452861 TAATAATAA
1 TAATAATAA
76452870 TAGTAACAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
TAATAATAAATAAT
Found at i:76459107 original size:16 final size:15
Alignment explanation
Indices: 76459073--76459117 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
76459063 ATAGGGACCT
*
76459073 TTATAATATACACTA
1 TTATAATATACAATA
*
76459088 TTATAATATTCAAATA
1 TTATAATATAC-AATA
76459104 TTATAATATACAAT
1 TTATAATATACAAT
76459118 TAAGTTTGAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (15 bp):
TTATAATATACAATA
Found at i:76465076 original size:50 final size:46
Alignment explanation
Indices: 76464967--76465239 Score: 218
Period size: 50 Copynumber: 5.8 Consensus size: 46
76464957 TATGTGAGCC
* * *
76464967 AGTGTAAGACATGTTTGGGACATGCATCGGCCA-C-ATTATGAAATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CATCGA-GATGGAA-GCT
*
76465014 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAAAGA-GACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCG--AGATG--GA-AGCT
* * * *
76465064 AGTGTAAGACATGTTTGGGACATGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGGAAGCT
* *
76465110 AGTGTAAGACATGTCTGGGACATGCATCGAC-TACGAGAT-G-TGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-CGAGATGGAAGCT
* * * *
76465154 AGTGTAAGACATGTTTGGGACATGCATCAGCA-CAGATATGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATC-GAGATG-GA-AGCT
* * *
76465202 AGTGTAAAACCATATCTGGGATATGGCATCGGCATCGA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGA
76465240 TATGTGTAAG
Statistics
Matches: 183, Mismatches: 25, Indels: 33
0.76 0.10 0.14
Matches are distributed among these distances:
43 1 0.01
44 34 0.19
45 1 0.01
46 41 0.22
47 30 0.16
48 14 0.08
49 13 0.07
50 47 0.26
51 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGGAAGCT
Found at i:76465179 original size:90 final size:95
Alignment explanation
Indices: 76464962--76465181 Score: 290
Period size: 97 Copynumber: 2.3 Consensus size: 95
76464952 GCTGTTATGT
* * *
76464962 GAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAAATGCTAGTGTAAGACATG
1 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATGATGAAATGCCAGTGTAAGACATG
*
76465027 TCTGGGACATGCATCGGCATTGAAAGAGACGA
66 TCTGGGACATGCATCGGCACT-AAAGAGAC-A
* *
76465059 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCGA-GATGTAA-GCCAGTGTAAGACAT
1 GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATGATGAAATGCCAGTGTAAGACAT
* *
76465122 GTCTGGGACATGCATC-G-ACT-ACGAGA-T
65 GTCTGGGACATGCATCGGCACTAAAGAGACA
*
76465149 GTGCTAGTGTAAGACATGTTTGGGACATGCATC
1 GAGCTAGTGTAAGACATGTTTGGGACATGCATC
76465182 AGCACAGATA
Statistics
Matches: 113, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
90 32 0.28
92 5 0.04
94 2 0.02
95 1 0.01
96 30 0.27
97 42 0.37
98 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (95 bp):
GAGCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATGATGAAATGCCAGTGTAAGACATG
TCTGGGACATGCATCGGCACTAAAGAGACA
Found at i:76465195 original size:44 final size:44
Alignment explanation
Indices: 76464967--76465195 Score: 210
Period size: 46 Copynumber: 5.0 Consensus size: 44
76464957 TATGTGAGCC
* **
76464967 AGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAAATGCT
1 AGTGTAAGACATGTTTGGGACATGCATCGG-CACA-GA-GATGTGCT
* * * *
76465014 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAAAGAGACGAGAGCT
1 AGTGTAAGACATGTTTGGGACATGCATCGGC----ACAGAGA--TGTGCT
* *
76465064 AGTGTAAGACATGTTTGGGACATGCATCGGC-CTCGAGATGTAAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCAC-AGAGATGT--GCT
* *
76465110 AGTGTAAGACATGTCTGGGACATGCATCGACTAC-GAGATGTGCT
1 AGTGTAAGACATGTTTGGGACATGCATCGGC-ACAGAGATGTGCT
* *
76465154 AGTGTAAGACATGTTTGGGACATGCATCAGCACAGATATGTG
1 AGTGTAAGACATGTTTGGGACATGCATCGGCACAGAGATGTG
76465196 AGAGCCAGTG
Statistics
Matches: 152, Mismatches: 18, Indels: 27
0.77 0.09 0.14
Matches are distributed among these distances:
43 2 0.01
44 38 0.25
46 43 0.28
47 29 0.19
48 3 0.02
49 1 0.01
50 36 0.24
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCACAGAGATGTGCT
Found at i:76465231 original size:140 final size:141
Alignment explanation
Indices: 76464958--76465244 Score: 330
Period size: 140 Copynumber: 2.0 Consensus size: 141
76464948 CATTGCTGTT
* * * *
76464958 ATGTGAGCCAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAAATGCTAGTGTAAGA
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATGATG--ATGCTAGTGTAAGA
* ** * * * *
76465023 CATGTCTGGGACATGCATCGGCATTGAAAGAGACGAGAGCTAGTGTAAGACATGTTTGGGACATG
64 CATGTCTGGGACATGCATCAGCACAGAAAGAGACGAGAGCCAGTGTAAAACATATCTGGGACATG
*
76465088 CATCGGCCTCGAG
129 CATCGGCATCGAG
*
76465101 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGA-GATG-TGCTAGTGTAAGAC
1 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATGATGATGCTAGTGTAAGAC
* * * * *
76465164 ATGTTTGGGACATGCATCAGCACAGATA-TG-TGAGAGCCAGTGTAAAACCATATCTGGGATATG
65 ATGTCTGGGACATGCATCAGCACAGAAAGAGACGAGAGCCAGTGTAAAA-CATATCTGGGACAT-
*
76465227 GCATCGGCATCGAT
128 GCATCGGCATCGAG
76465241 ATGT
1 ATGT
76465245 GTAAGATTTC
Statistics
Matches: 122, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
138 14 0.11
139 12 0.10
140 53 0.43
143 42 0.34
144 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.24
Consensus pattern (141 bp):
ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCACATGATGATGCTAGTGTAAGACA
TGTCTGGGACATGCATCAGCACAGAAAGAGACGAGAGCCAGTGTAAAACATATCTGGGACATGCA
TCGGCATCGAG
Found at i:76482457 original size:27 final size:28
Alignment explanation
Indices: 76482364--76482461 Score: 116
Period size: 27 Copynumber: 3.7 Consensus size: 28
76482354 TGTCTCATTG
76482364 GACTATCTC-GTGTTTAACATCCTGTTA
1 GACTATCTCAGTGTTTAACATCCTGTTA
* * * *
76482391 GACTATC-C-TTGTTTAGCATCCTATCA
1 GACTATCTCAGTGTTTAACATCCTGTTA
*
76482417 GACTATCCCA-TGTTTAACATCCTGTTA
1 GACTATCTCAGTGTTTAACATCCTGTTA
76482444 GACTAT-TCAGTGTTTAAC
1 GACTATCTCAGTGTTTAAC
76482462 GTCTCGTCAG
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 24 0.40
27 36 0.60
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.39
Consensus pattern (28 bp):
GACTATCTCAGTGTTTAACATCCTGTTA
Found at i:76483078 original size:22 final size:20
Alignment explanation
Indices: 76483020--76483080 Score: 52
Period size: 22 Copynumber: 2.9 Consensus size: 20
76483010 TACCAAATCA
76483020 TAAATA-ATCAAAAATTTAAT
1 TAAATATAT-AAAAATTTAAT
* * *
76483040 TAAAAATATTTACAATTATAATT
1 TAAATATA-TAAAAATT-TAA-T
76483063 TAAATATATAAAAATTTA
1 TAAATATATAAAAATTTA
76483081 TCAAAACCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
20 5 0.16
21 8 0.26
22 10 0.32
23 8 0.26
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAATATATAAAAATTTAAT
Found at i:76483453 original size:15 final size:14
Alignment explanation
Indices: 76483433--76483462 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
76483423 AATTTTAGTC
76483433 ATTTTAGTCCTCTAA
1 ATTTTAGTCCT-TAA
76483448 ATTTTAGTCCTTAA
1 ATTTTAGTCCTTAA
76483462 A
1 A
76483463 ACCAAACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.47
Consensus pattern (14 bp):
ATTTTAGTCCTTAA
Found at i:76488918 original size:23 final size:24
Alignment explanation
Indices: 76488875--76488921 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
76488865 ATCAACCGAA
76488875 TTCGCACACATAGTGCACCAAGATT
1 TTCGCACACATAGTG-ACCAAGATT
76488900 TTCGCACACATAGTG-CCAAGAT
1 TTCGCACACATAGTGACCAAGAT
76488922 ACACCGCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 7 0.32
25 15 0.68
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (24 bp):
TTCGCACACATAGTGACCAAGATT
Found at i:76488994 original size:24 final size:24
Alignment explanation
Indices: 76488967--76489012 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
76488957 GAATTTAACA
76488967 TTCAAAT-CAGCACACATAGTGCCT
1 TTCAAATAC-GCACACATAGTGCCT
* *
76488991 TTCAACTACGCACACGTAGTGC
1 TTCAAATACGCACACATAGTGC
76489013 TAGTATCGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.30, C:0.30, G:0.15, T:0.24
Consensus pattern (24 bp):
TTCAAATACGCACACATAGTGCCT
Found at i:76490991 original size:13 final size:13
Alignment explanation
Indices: 76490973--76490998 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76490963 ACTGTGGATT
76490973 TTGGTTTTAAAGA
1 TTGGTTTTAAAGA
76490986 TTGGTTTTAAAGA
1 TTGGTTTTAAAGA
76490999 AACGATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (13 bp):
TTGGTTTTAAAGA
Found at i:76500501 original size:17 final size:18
Alignment explanation
Indices: 76500470--76500503 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
76500460 GAAACCTTCC
*
76500470 ACTTTATACATACAATTT
1 ACTTTATACACACAATTT
76500488 ACTTT-TACACACAATT
1 ACTTTATACACACAATT
76500504 ACAACTTACA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (18 bp):
ACTTTATACACACAATTT
Found at i:76519006 original size:11 final size:11
Alignment explanation
Indices: 76518973--76519008 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
76518963 TGAATTGTAG
*
76518973 TAGTTAACAGA
1 TAGTTAACAGT
76518984 TAGTTAATCAGT
1 TAGTTAA-CAGT
76518996 TAGTTAACAGT
1 TAGTTAACAGT
76519007 TA
1 TA
76519009 CTCACCATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.39, C:0.08, G:0.17, T:0.36
Consensus pattern (11 bp):
TAGTTAACAGT
Found at i:76526851 original size:210 final size:209
Alignment explanation
Indices: 76526488--76527127 Score: 719
Period size: 210 Copynumber: 3.0 Consensus size: 209
76526478 TCTTCCCAAA
* * * ** * * *
76526488 AAAATAGTTAGCGAGACCTCAATCTCTCACCTGTGATATTAAGGCTTGTAGGTTCAATACCGCAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
* * * * * * * *
76526553 CCTCCAAAATAGATAGCGAGAGCTTAAGTTCAC-AGCTATAATATTAAGGCTTGCATGTTCAACA
66 CCTCCAAAATAGTTAGCGAGAGCTCAAGCTC-CTAACTATGATCTTAAGGCTCGCAAGTTCAACA
* * * * *
76526617 CCATAACCTCTAAAAAAATTAGCGAGAGCTCAAGCTCCGAACTGTGATTTTAAGTCTCGCAAGTT
130 CCATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCC-AGCTGTGATCTTAAGGCTCACAAGTT
*
76526682 CAACATCATAGCCTCC
194 CAACACCATAGCCTCC
* * *
76526698 AAAATAGTTAGTGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAACACAGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
* * * *
76526763 CCTCCAAAACAGTTAGTGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCACAGGTTCAACAC
66 CCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCGCAAGTTCAACAC
* * * * * *
76526828 CGTAGCCTCTAAAATAGTTAGCGATAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCACAGGTTC
131 CATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCT-CCAGCTGTGATCTTAAGGCTCACAAGTTC
*
76526893 AACACCTTAGCCTCC
195 AACACCATAGCCTCC
* ** * *
76526908 AAAATAGTTAGCAAGAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCGCAAGTTCAATACCA-CA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATA-CAGCA
* * * * *
76526972 ACCTCTAAAATAGTTAGCGAGAGCTCAAGCTCTTAGA-TCTGATCTTAAGGCTCGCAAGTTCAAT
65 GCCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTA-ACTATGATCTTAAGGCTCGCAAGTTCAAC
* * *
76527036 ACCACAACCTCTAAAACAGTTAGCGAGAGCTCAAGCTCTCAGCTGTGATCTTAAGGCTCACAAAT
129 ACCATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTC-CAGCTGTGATCTTAAGGCTCACAAGT
*** *
76527101 TCAAGCACTGCAGCCTTC
193 TCAA-CACCATAGCCTCC
76527119 AAAATAGTT
1 AAAATAGTT
76527128 GAAGCTCGTG
Statistics
Matches: 360, Mismatches: 64, Indels: 11
0.83 0.15 0.03
Matches are distributed among these distances:
209 2 0.01
210 335 0.93
211 23 0.06
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (209 bp):
AAAATAGTTAGCGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAATACAGCAG
CCTCCAAAATAGTTAGCGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCGCAAGTTCAACAC
CATAACCTCTAAAAAAGTTAGCGAGAGCTCAAGCTCCAGCTGTGATCTTAAGGCTCACAAGTTCA
ACACCATAGCCTCC
Found at i:76527104 original size:70 final size:70
Alignment explanation
Indices: 76526488--76527127 Score: 625
Period size: 70 Copynumber: 9.1 Consensus size: 70
76526478 TCTTCCCAAA
* * * * * * * * * **
76526488 AAAATAGTTAGCGAGACCTCAATCTCTCACCTGTGATATTAAGGCTTGTAGGTTCAATACCGCAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
76526553 CCTCC
66 CCTCC
* * * * * * * * * *
76526558 AAAATAGATAGCGAGAGCTTAAGTTCACAGCTATAATATTAAGGCTTGCATGTTCAACACCATAA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
*
76526623 CCTCT
66 CCTCC
* * * * * * *
76526628 AAAAAAATTAGCGAGAGCTCAAGCTCCGAACTGTGATTTTAAGTCTCGCAAGTTCAACATCATAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
76526693 CCTCC
66 CCTCC
* ** * *
76526698 AAAATAGTTAGTGAGAGCTCAAGCTCCCAAATGTGATCTTAAGGCTCGTAGGTTCAACA-CAGTA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCA-TA
76526762 GCCTCC
65 GCCTCC
* * * * * * * *
76526768 AAAACAGTTAGTGAGAGCTCAAGCTCCTAACTATGATCTTAAGGCTCACAGGTTCAACACCGTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
*
76526833 CCTCT
66 CCTCC
* * * * *
76526838 AAAATAGTTAGCGATAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCACAGGTTCAACACCTTAG
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
76526903 CCTCC
66 CCTCC
* * * * *
76526908 AAAATAGTTAGCAAGAGCTCAAGCTCCCAGTTGTGATCTTAAGGCTCGCAAGTTCAATACCACAA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
*
76526973 CCTCT
66 CCTCC
** * * * * *
76526978 AAAATAGTTAGCGAGAGCTCAAGCTCTTAGATCTGATCTTAAGGCTCGCAAGTTCAATACCACAA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
*
76527043 CCTCT
66 CCTCC
* * * * ***
76527048 AAAACAGTTAGCGAGAGCTCAAGCTCTCAGCTGTGATCTTAAGGCTCACAAATTCAAGCACTGCA
1 AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAA-CACCATA
*
76527113 GCCTTC
65 GCCTCC
76527119 AAAATAGTT
1 AAAATAGTT
76527128 GAAGCTCGTG
Statistics
Matches: 481, Mismatches: 86, Indels: 5
0.84 0.15 0.01
Matches are distributed among these distances:
69 2 0.00
70 463 0.96
71 16 0.03
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.25
Consensus pattern (70 bp):
AAAATAGTTAGCGAGAGCTCAAGCTCCCAGCTGTGATCTTAAGGCTCGCAAGTTCAACACCATAG
CCTCC
Found at i:76527231 original size:25 final size:25
Alignment explanation
Indices: 76527201--76527250 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
76527191 ATTTGCTTAA
76527201 GTTAAAATTTTGCTCAAGTTCACGG
1 GTTAAAATTTTGCTCAAGTTCACGG
76527226 GTTAAAATTTTGCTCAAGTTCACGG
1 GTTAAAATTTTGCTCAAGTTCACGG
76527251 AGAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (25 bp):
GTTAAAATTTTGCTCAAGTTCACGG
Found at i:76530306 original size:20 final size:20
Alignment explanation
Indices: 76530265--76530314 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
76530255 TGTCAATCCT
* *
76530265 ATGAATAGTGGGGTTAAGTC
1 ATGAATAGTGGAGTGAAGTC
76530285 ATGAATAGTGGAGTCGAA-TC
1 ATGAATAGTGGAGT-GAAGTC
*
76530305 ATGAACAGTG
1 ATGAATAGTG
76530315 ATAATATGTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.08, G:0.32, T:0.26
Consensus pattern (20 bp):
ATGAATAGTGGAGTGAAGTC
Found at i:76530777 original size:31 final size:31
Alignment explanation
Indices: 76530722--76530790 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
76530712 TTTGGGCTAA
* *
76530722 GACTAAAATTTAAAAATTTAAAAAGTACAAT
1 GACTAAAATTTAAAAATTCAAAAAGTACAAG
** * *
76530753 GACTAAAATTTACTAATTCGAAAAGTATAAG
1 GACTAAAATTTAAAAATTCAAAAAGTACAAG
76530784 GACTAAA
1 GACTAAA
76530791 GTTGATCAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.28
Consensus pattern (31 bp):
GACTAAAATTTAAAAATTCAAAAAGTACAAG
Found at i:76533537 original size:69 final size:69
Alignment explanation
Indices: 76533425--76533566 Score: 248
Period size: 69 Copynumber: 2.1 Consensus size: 69
76533415 TTTTTCGGGT
* *
76533425 TAGTATACAACCCGTGTACATGGACGGGAAAAGCATACATACATGTTGCGCCTATCTGATAGGCT
1 TAGTATACAACCCGTGTACATAGACGGGAAAAGCATACATACATGTTGCACCTATCTGATAGGCT
76533490 CAAC
66 CAAC
* *
76533494 TAGTATACAACCCGTGTACATAGATGGGAAAAGCATACTTACATGTTGCACCTATCTGATAGGCT
1 TAGTATACAACCCGTGTACATAGACGGGAAAAGCATACATACATGTTGCACCTATCTGATAGGCT
76533559 CAAC
66 CAAC
76533563 TAGT
1 TAGT
76533567 TGAGCCTATC
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (69 bp):
TAGTATACAACCCGTGTACATAGACGGGAAAAGCATACATACATGTTGCACCTATCTGATAGGCT
CAAC
Found at i:76533576 original size:27 final size:27
Alignment explanation
Indices: 76533544--76533600 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
76533534 ACATGTTGCA
* *
76533544 CCTATCTGATAGGCTCAACTAGTTGAG
1 CCTATCTGACAGGCACAACTAGTTGAG
* *
76533571 CCTATCTGACAGGCACGACTAGTTGTG
1 CCTATCTGACAGGCACAACTAGTTGAG
76533598 CCT
1 CCT
76533601 TCTTGGTAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (27 bp):
CCTATCTGACAGGCACAACTAGTTGAG
Found at i:76535574 original size:80 final size:78
Alignment explanation
Indices: 76535407--76535612 Score: 234
Period size: 80 Copynumber: 2.6 Consensus size: 78
76535397 AATTGAATGA
* * ** * * *
76535407 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCC-GGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
*
76535471 TTGTGCTAGTGAC
66 TTGTGCAAGTGAC
* * *
76535484 TACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGC
* *
76535549 ATTTGTGCAAGTCGTTC
64 AATTGTGCAAGT-G-AC
* *
76535566 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
76535613 TTGTATTCCG
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
77 1 0.01
79 36 0.33
80 68 0.63
81 1 0.01
82 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (78 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCAAGTGAC
Found at i:76535610 original size:40 final size:40
Alignment explanation
Indices: 76535406--76535612 Score: 197
Period size: 40 Copynumber: 5.2 Consensus size: 40
76535396 CAATTGAATG
* * ** **
76535406 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTT
* **
76535446 ATATCC-GGTTAAGACCCGAAGGCAATT-GTGC-TAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAT-GTGGTT
* * *
76535485 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* * * * *
76535525 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
*
76535565 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
76535605 ATATCCGG
1 ATATCCGG
76535613 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 31 0.22
40 109 0.78
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
Found at i:76540683 original size:33 final size:32
Alignment explanation
Indices: 76540594--76540691 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 32
76540584 ATAGAATATG
* *
76540594 GCGGTGGATATGGGCCCGGAGGAGTAGAGTACA
1 GCGGTGGATA-CGGCCTGGAGGAGTAGAGTACA
*
76540627 GCGGTGGATACGGCTCTGGAGGAGTTGAGTACA
1 GCGGTGGATACGGC-CTGGAGGAGTAGAGTACA
*
76540660 TG-GGTGGATACGAG-CTGGAAGGAGCAGAGTAC
1 -GCGGTGGATACG-GCCTGG-AGGAGTAGAGTAC
76540692 TGAGATAAAT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
32 7 0.12
33 47 0.84
34 2 0.04
ACGTcount: A:0.24, C:0.14, G:0.44, T:0.17
Consensus pattern (32 bp):
GCGGTGGATACGGCCTGGAGGAGTAGAGTACA
Found at i:76540866 original size:12 final size:12
Alignment explanation
Indices: 76540841--76540875 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
76540831 AGAGTGTAGT
*
76540841 TCCGGCTTTGGC
1 TCCGGCTCTGGC
*
76540853 TCCTGCTCTGGC
1 TCCGGCTCTGGC
76540865 TCCGGCTCTGG
1 TCCGGCTCTGG
76540876 TGCATGATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.37, G:0.31, T:0.31
Consensus pattern (12 bp):
TCCGGCTCTGGC
Found at i:76543146 original size:113 final size:114
Alignment explanation
Indices: 76542815--76543257 Score: 723
Period size: 114 Copynumber: 3.9 Consensus size: 114
76542805 ATACTAACAC
* * *
76542815 AAAATAACTATAAAATTATTATTTTT-AAATAAATTACTAAAAAAATCACAATACACTAATACAC
1 AAAATAGCTATAAAAATATT-TTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACAC
76542879 ACTAAACCACTAAACACTAACAA--TATATAACCTAATCTTAAATTACTAAT
65 -C-AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
76542929 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACT
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACC
* *
76542994 AAACCACTAAACACTAACAATTTATATAATCTAACCTTAAATTACTAAT
66 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
*
76543043 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACT-AAAAAATTACAATACACTAATACACC
1 AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACC
76543107 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
66 AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
* *
76543156 AAAATAGCTATAAAATTATTTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACTC
1 AAAATAGCTATAAAAATA-TTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACAC
* *
76543221 TAAACTACTAAACACTAACAATTTATATAACCTAATC
65 CAAACCACTAAACACTAACAATTTATATAACCTAATC
76543258 AACTATAAAA
Statistics
Matches: 309, Mismatches: 15, Indels: 9
0.93 0.05 0.03
Matches are distributed among these distances:
112 20 0.06
113 93 0.30
114 138 0.45
115 58 0.19
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.32
Consensus pattern (114 bp):
AAAATAGCTATAAAAATATTTTTTTAAAATATATTACTAAAAAAATCACAATACACTAATACACC
AAACCACTAAACACTAACAATTTATATAACCTAATCTTAAATTACTAAT
Found at i:76543533 original size:3 final size:3
Alignment explanation
Indices: 76543527--76543586 Score: 75
Period size: 3 Copynumber: 19.3 Consensus size: 3
76543517 TACCCTTTTT
*
76543527 TTC TTC TTC TTC TCC TTC TTC TTC TTC TTC TTCC TTC TTC TTCC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT-C TTC TTC TT-C TTC
* *
76543574 TTT TTC TCC TTC T
1 TTC TTC TTC TTC T
76543587 CCTTTCTCTC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
3 43 0.88
4 6 0.12
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
TTC
Found at i:76543544 original size:9 final size:9
Alignment explanation
Indices: 76543527--76543599 Score: 67
Period size: 9 Copynumber: 7.9 Consensus size: 9
76543517 TACCCTTTTT
*
76543527 TTCTTCTTC
1 TTCTCCTTC
76543536 TTCTCCTTC
1 TTCTCCTTC
*
76543545 TTCTTCTTC
1 TTCTCCTTC
76543554 TTCTTCCTTC
1 TTC-TCCTTC
76543564 TTCTTCCTTC
1 TTC-TCCTTC
* * *
76543574 TTTTTCTCC
1 TTCTCCTTC
76543583 TTCTCCTT-
1 TTCTCCTTC
76543591 TCTCTCCTT
1 T-TCTCCTT
76543600 TCTTTCTTAC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
8 1 0.02
9 35 0.66
10 17 0.32
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (9 bp):
TTCTCCTTC
Found at i:76543810 original size:27 final size:27
Alignment explanation
Indices: 76543772--76543823 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
76543762 AGGTGGGGGT
*
76543772 GTCGTGCCTACCTGTCAGGCACGACTA
1 GTCGTGCCTACCTGACAGGCACGACTA
*
76543799 GTCGTGCCTACCTGACAGGCTCGAC
1 GTCGTGCCTACCTGACAGGCACGAC
76543824 CCGTTTCGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.17, C:0.35, G:0.27, T:0.21
Consensus pattern (27 bp):
GTCGTGCCTACCTGACAGGCACGACTA
Found at i:76544655 original size:24 final size:22
Alignment explanation
Indices: 76544612--76544661 Score: 73
Period size: 24 Copynumber: 2.2 Consensus size: 22
76544602 TGTTATAAAA
*
76544612 ATTAATTAATATAATTAAACCT
1 ATTAATTAATAAAATTAAACCT
76544634 ATTAATTATATAAAAATTAAACCT
1 ATTAATTA-AT-AAAATTAAACCT
76544658 ATTA
1 ATTA
76544662 CTCAAATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 8 0.32
23 2 0.08
24 15 0.60
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTAATTAATAAAATTAAACCT
Found at i:76544689 original size:36 final size:37
Alignment explanation
Indices: 76544591--76544727 Score: 99
Period size: 36 Copynumber: 3.8 Consensus size: 37
76544581 CGGGGTGGCC
*
76544591 CAAATATATTATGTTATAAAAATT-AATTAATATAAT
1 CAAATATATTATGTTATAAAAATTAAACTAATATAAT
* ** *
76544627 TAAACCTATTAAT-TATATAAAAATTAAACCT-AT-TACT
1 CAAATATATT-ATGT-TATAAAAATTAAA-CTAATATAAT
*
76544664 CAAATATATTATGTTATAAAAATT-AA-TTATATAAT
1 CAAATATATTATGTTATAAAAATTAAACTAATATAAT
* * *
76544699 TAAATCTATTAAT-TATATAACAATTAAAC
1 CAAATATATT-ATGT-TATAAAAATTAAAC
76544728 CTATTACCCA
Statistics
Matches: 78, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
33 1 0.01
34 2 0.03
35 14 0.18
36 31 0.40
37 25 0.32
38 4 0.05
39 1 0.01
ACGTcount: A:0.51, C:0.07, G:0.01, T:0.40
Consensus pattern (37 bp):
CAAATATATTATGTTATAAAAATTAAACTAATATAAT
Found at i:76544724 original size:72 final size:73
Alignment explanation
Indices: 76544589--76544739 Score: 268
Period size: 72 Copynumber: 2.1 Consensus size: 73
76544579 CCCGGGGTGG
76544589 CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
1 CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
76544654 ACCTATTA
66 ACCTATTA
* * *
76544662 CTCAAATATATTATGTTATAAAAATTAATT-ATATAATTAAATCTATTAATTATATAACAATTAA
1 CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
76544726 ACCTATTA
66 ACCTATTA
76544734 CCCAAA
1 CCCAAA
76544740 ACCTAAAAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
72 45 0.61
73 29 0.39
ACGTcount: A:0.50, C:0.11, G:0.01, T:0.38
Consensus pattern (73 bp):
CCCAAATATATTATGTTATAAAAATTAATTAATATAATTAAACCTATTAATTATATAAAAATTAA
ACCTATTA
Found at i:76544983 original size:34 final size:34
Alignment explanation
Indices: 76544940--76545007 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
76544930 AAAGGAATAG
76544940 GATGACATGAAATCACAATTTCATATAATCTTTT
1 GATGACATGAAATCACAATTTCATATAATCTTTT
*
76544974 GATGACATGAAATTACAATTTCATATAATCTTTT
1 GATGACATGAAATCACAATTTCATATAATCTTTT
76545008 CTTCCCAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (34 bp):
GATGACATGAAATCACAATTTCATATAATCTTTT
Found at i:76557094 original size:21 final size:21
Alignment explanation
Indices: 76557052--76557111 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
76557042 TTAGGAAGAC
**
76557052 TTTAAAATTTAAAATCATTCTT
1 TTTAAAAAGTAAAAT-ATTCTT
76557074 TTTAAAAAGTAAAATATTCTT
1 TTTAAAAAGTAAAATATTCTT
* *
76557095 TTCAAAAAGTAACATAT
1 TTTAAAAAGTAAAATAT
76557112 ATAGAGTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 21 0.62
22 13 0.38
ACGTcount: A:0.47, C:0.08, G:0.03, T:0.42
Consensus pattern (21 bp):
TTTAAAAAGTAAAATATTCTT
Found at i:76563251 original size:43 final size:45
Alignment explanation
Indices: 76563180--76563263 Score: 120
Period size: 43 Copynumber: 1.9 Consensus size: 45
76563170 AAGTCCATGT
*
76563180 AGAAAGGGACACACGGCCGTGTAGCTAAGGCACACGCCCGTATAA
1 AGAAAGGGACACACGGCCGTGTAGCTAAGGCACACACCCGTATAA
*
76563225 AGAAAGGTACACGACGG-CGTG-A-CTAAGGCACACACCCGT
1 AGAAAGGGACAC-ACGGCCGTGTAGCTAAGGCACACACCCGT
76563264 GTGGACCAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
43 16 0.44
44 1 0.03
45 15 0.42
46 4 0.11
ACGTcount: A:0.33, C:0.27, G:0.29, T:0.11
Consensus pattern (45 bp):
AGAAAGGGACACACGGCCGTGTAGCTAAGGCACACACCCGTATAA
Found at i:76565459 original size:2 final size:2
Alignment explanation
Indices: 76565452--76565488 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
76565442 TAATTGCTTT
76565452 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
76565489 TCCCCTCCAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:76566858 original size:13 final size:14
Alignment explanation
Indices: 76566840--76566872 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
76566830 CAAAAACAAC
76566840 TTAATAAG-CTTAA
1 TTAATAAGACTTAA
76566853 TTAAT-AGACTTAA
1 TTAATAAGACTTAA
76566866 TTAATAA
1 TTAATAA
76566873 ACAAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 2 0.11
13 15 0.83
14 1 0.06
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (14 bp):
TTAATAAGACTTAA
Found at i:76566898 original size:28 final size:28
Alignment explanation
Indices: 76566863--76566927 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
76566853 TTAATAGACT
**
76566863 TAATTAATAAACAAATTTAATGCTTAAC
1 TAATTAATAAACAAATTTAACACTTAAC
* *
76566891 TAATTAATAACCACATTTAACACTTAAC
1 TAATTAATAAACAAATTTAACACTTAAC
76566919 TAACTTAAT
1 TAA-TTAAT
76566928 TAATAAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 27 0.84
29 5 0.16
ACGTcount: A:0.48, C:0.15, G:0.02, T:0.35
Consensus pattern (28 bp):
TAATTAATAAACAAATTTAACACTTAAC
Found at i:76577641 original size:3 final size:3
Alignment explanation
Indices: 76577633--76577696 Score: 67
Period size: 3 Copynumber: 20.0 Consensus size: 3
76577623 AATAGAGGTG
*
76577633 ATA ATA ATA ATAA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
76577679 CATA TATA TATA ATA ATA
1 -ATA -ATA -ATA ATA ATA
76577697 GTAGTCAGAA
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
2 1 0.02
3 40 0.73
4 14 0.25
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:76577784 original size:3 final size:3
Alignment explanation
Indices: 76577771--76577848 Score: 56
Period size: 3 Copynumber: 25.3 Consensus size: 3
76577761 GAGGGCATAT
76577771 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
76577815 ATA ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA A
76577849 ATAAAAAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 16
0.73 0.07 0.19
Matches are distributed among these distances:
2 7 0.11
3 43 0.70
4 9 0.15
5 2 0.03
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:76577795 original size:12 final size:12
Alignment explanation
Indices: 76577771--76577853 Score: 75
Period size: 12 Copynumber: 6.8 Consensus size: 12
76577761 GAGGGCATAT
76577771 ATAATAT-AATA
1 ATAATATAAATA
76577782 ATAATATAAATA
1 ATAATATAAATA
76577794 ATAATATATACATGA
1 ATAATATA-A-AT-A
76577809 GA-AATA-ATAATA
1 -ATAATATA-AATA
76577821 ATAATATAAATA
1 ATAATATAAATA
* *
76577833 ATAGTAAAAATA
1 ATAATATAAATA
76577845 ATAA-ATAAA
1 ATAATATAAA
76577854 AAAATAAAAC
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
11 12 0.20
12 34 0.56
13 4 0.07
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:76577815 original size:21 final size:18
Alignment explanation
Indices: 76577776--76577835 Score: 75
Period size: 18 Copynumber: 3.2 Consensus size: 18
76577766 CATATATAAT
*
76577776 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
76577794 ATAATATATACATGAGAAATA
1 ATAATA-ATA-AT-AGAAATA
*
76577815 ATAATAATAATATAAATA
1 ATAATAATAATAGAAATA
76577833 ATA
1 ATA
76577836 GTAAAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
18 15 0.41
19 5 0.14
20 5 0.14
21 12 0.32
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAGAAATA
Found at i:76577844 original size:27 final size:27
Alignment explanation
Indices: 76577771--76577848 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 27
76577761 GAGGGCATAT
* *
76577771 ATAATAT-AATAATAATATAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
* *
76577797 AT-ATATACAT--GAG-AAATAATAATA
1 ATAATATAAATAATAGTAAA-AATAATA
76577821 ATAATATAAATAATAGTAAAAATAATA
1 ATAATATAAATAATAGTAAAAATAATA
76577848 A
1 A
76577849 ATAAAAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 11
0.70 0.11 0.19
Matches are distributed among these distances:
23 2 0.05
24 10 0.25
25 11 0.28
26 4 0.10
27 10 0.25
28 3 0.08
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (27 bp):
ATAATATAAATAATAGTAAAAATAATA
Found at i:76578939 original size:44 final size:44
Alignment explanation
Indices: 76578891--76579133 Score: 181
Period size: 44 Copynumber: 5.5 Consensus size: 44
76578881 TAAAATCAGC
**
76578891 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCAACTTCGAT
* * * * * * * *
76578935 CTGTTTCCGTACTGCTTAGGGGGTTAA-GATCTGTAAATTTAG-T
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTC-ATCAACTTCGAT
* ** * *
76578978 CTGTTACCCTACTGCTTAGGGTTTTAAAACTCATCATCTTCAAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCAACTTCGAT
* * * * * * *
76579022 CTGCTT-CCCTACTGCTTAGGGGGTTGAGG-TCTGTAAATTTAG-C
1 CTG-TTACCCTACTGCTTAGGGGTTTAAGGCTC-ATCAACTTCGAT
* * *
76579065 CTGTTACCCTACTGCTTAGGGGTTTAAGACTCATCATCTTCAAT
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCAACTTCGAT
*
76579109 CTGTTTCCCTACTGCTTAAGGGGTT
1 CTGTTACCCTACTGCTT-AGGGGTT
76579134 GAGATCTGTA
Statistics
Matches: 145, Mismatches: 45, Indels: 17
0.70 0.22 0.08
Matches are distributed among these distances:
42 2 0.01
43 60 0.41
44 74 0.51
45 9 0.06
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (44 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGCTCATCAACTTCGAT
Found at i:76578997 original size:87 final size:87
Alignment explanation
Indices: 76578845--76579146 Score: 424
Period size: 87 Copynumber: 3.5 Consensus size: 87
76578835 GTCATCATTG
* * * * *
76578845 ATCTGTTTCCCTACTGCTTAGGTGTTTACGATCTTGTAAAATCAGCCTGTTACCCTACTGCTTAG
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATC-TGTAAATTTAGCCTGTTACCCTACTGCTTAG
* * *
76578910 GGGTTTAAGGCTCATCGCCTTCG
65 GGGTTTAAGACTCATCACCTTCA
* *
76578933 ATCTGTTTCCGTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGTCTGTTACCCTACTGCTTAGG
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGG
* * *
76578998 GTTTTAAAACTCATCATCTTCA
66 GGTTTAAGACTCATCACCTTCA
* * *
76579020 ATCTGCTTCCCTACTGCTTAGGGGGTTGAGGTCTGTAAATTTAGCCTGTTACCCTACTGCTTAGG
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGG
*
76579085 GGTTTAAGACTCATCATCTTCA
66 GGTTTAAGACTCATCACCTTCA
* *
76579107 ATCTGTTTCCCTACTGCTTAAGGGGTTGAGATCTGTAAAT
1 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAAT
76579147 CTTCAATCTG
Statistics
Matches: 191, Mismatches: 23, Indels: 1
0.89 0.11 0.00
Matches are distributed among these distances:
87 162 0.85
88 29 0.15
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.37
Consensus pattern (87 bp):
ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGCCTGTTACCCTACTGCTTAGG
GGTTTAAGACTCATCACCTTCA
Found at i:76579416 original size:87 final size:86
Alignment explanation
Indices: 76579284--76579456 Score: 242
Period size: 87 Copynumber: 2.0 Consensus size: 86
76579274 TGTAAATTTG
** *
76579284 GCTTGTTACCCTACTGCTTAAGGGGTTAAAGCTCATTATTTTCGATCTATTTCCCTAATGCTTA-
1 GCTTGTTACCCTACTGCTTAAGGGGTTAAAGCTCATTACCTTCGATCTATTCCCCTAATGCTTAT
76579348 GGGTGATAAGATCTATGAACTTCA
66 GGG-G-TAAGATCTATGAA-TTCA
* * *
76579372 GCTTGTTACCCTACTGCTT-AGGGGTTAAAGCTCGTTGCCTTCGATCTATTCCCCTACTGCTTAT
1 GCTTGTTACCCTACTGCTTAAGGGGTTAAAGCTCATTACCTTCGATCTATTCCCCTAATGCTTAT
*
76579436 GGGGTAAGATCTGTGAATTCA
66 GGGGTAAGATCTATGAATTCA
76579457 CTGATTCTAG
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
85 4 0.05
86 12 0.16
87 39 0.51
88 22 0.29
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (86 bp):
GCTTGTTACCCTACTGCTTAAGGGGTTAAAGCTCATTACCTTCGATCTATTCCCCTAATGCTTAT
GGGGTAAGATCTATGAATTCA
Found at i:76579431 original size:43 final size:42
Alignment explanation
Indices: 76579289--76579440 Score: 121
Period size: 44 Copynumber: 3.5 Consensus size: 42
76579279 ATTTGGCTTG
*
76579289 TTACCCTACTGCTTAAGGGGTTAAAGCTCATT-ATTTTCGATCTA
1 TTACCCTACTGCTT-AGGGGTTAAAGCTC-TTGA-CTTCGATCTA
* * * * * *
76579333 TTTCCCTAATGCTTA-GGGTGATAAGATCTATGAACTTC-AGCTTG
1 TTACCCTACTGCTTAGGGGTTA-AAGCTCT-TG-ACTTCGATC-TA
*
76579377 TTACCCTACTGCTTAGGGGTTAAAGCTCGTTGCCTTCGATCTA
1 TTACCCTACTGCTTAGGGGTTAAAGCTC-TTGACTTCGATCTA
*
76579420 TTCCCCTACTGCTTATGGGGT
1 TTACCCTACTGCTTA-GGGGT
76579441 AAGATCTGTG
Statistics
Matches: 84, Mismatches: 15, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 6 0.07
43 28 0.33
44 43 0.51
45 7 0.08
ACGTcount: A:0.21, C:0.22, G:0.20, T:0.37
Consensus pattern (42 bp):
TTACCCTACTGCTTAGGGGTTAAAGCTCTTGACTTCGATCTA
Found at i:76587501 original size:19 final size:20
Alignment explanation
Indices: 76587477--76587523 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
76587467 AGAGAAAGTT
76587477 TAATGCAAATGT-TGCAATG
1 TAATGCAAATGTATGCAATG
*
76587496 TAATGCAAATGTATGGAATG
1 TAATGCAAATGTATGCAATG
76587516 -AATGCAAA
1 TAATGCAAA
76587524 AGAAAGGAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (20 bp):
TAATGCAAATGTATGCAATG
Found at i:76592255 original size:3 final size:3
Alignment explanation
Indices: 76592241--76592294 Score: 83
Period size: 3 Copynumber: 18.0 Consensus size: 3
76592231 AAAGTAGAAT
*
76592241 AGA AGA AAA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A-GA
76592287 A-A AGA AGA
1 AGA AGA AGA
76592295 GGGAGGGAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
2 2 0.04
3 42 0.89
4 3 0.06
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:76596366 original size:22 final size:21
Alignment explanation
Indices: 76596338--76596389 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
76596328 AATAGAAACG
76596338 AATAGAATTCTAGTTCTCAAAA
1 AATAGAATTCTA-TTCTCAAAA
* *
76596360 AATAGAACT-TATTCTTAAAA
1 AATAGAATTCTATTCTCAAAA
76596380 AATA-AATTCT
1 AATAGAATTCT
76596390 CACTACTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 3 0.12
20 13 0.50
21 2 0.08
22 8 0.31
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.35
Consensus pattern (21 bp):
AATAGAATTCTATTCTCAAAA
Found at i:76599296 original size:25 final size:25
Alignment explanation
Indices: 76599239--76599298 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
76599229 GAGCTGTAAA
*
76599239 CGGTAAGCTCATATAAGCTGAATAT
1 CGGTAAGCTCATACAAGCTGAATAT
** * *
76599264 CGACAAGCTCATACGAGTTGAATAT
1 CGGTAAGCTCATACAAGCTGAATAT
76599289 CGGTAAGCTC
1 CGGTAAGCTC
76599299 TCTTGAATTG
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (25 bp):
CGGTAAGCTCATACAAGCTGAATAT
Found at i:76605325 original size:12 final size:12
Alignment explanation
Indices: 76605308--76605337 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
76605298 AATAAATGTA
76605308 ACACGGCCTAGC
1 ACACGGCCTAGC
*
76605320 ACACGGCCTGGC
1 ACACGGCCTAGC
76605332 ACACGG
1 ACACGG
76605338 GCGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:76605517 original size:21 final size:20
Alignment explanation
Indices: 76605477--76605519 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
76605467 CCCCTACAGC
*
76605477 TTTGAAAATTTGCAATGTTT
1 TTTGAAAATTTACAATGTTT
76605497 TTTGAAAAATTCTACAA-GTTT
1 TTTG-AAAATT-TACAATGTTT
76605518 TT
1 TT
76605520 GATTTAGTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.49
Consensus pattern (20 bp):
TTTGAAAATTTACAATGTTT
Found at i:76609326 original size:17 final size:17
Alignment explanation
Indices: 76609300--76609346 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
76609290 TGAGAAGTAG
*
76609300 TCTTAAAAGATTTAAAA
1 TCTTAGAAGATTTAAAA
**
76609317 TCTTAGAAGATTTTTAA
1 TCTTAGAAGATTTAAAA
76609334 TCTTAGAAGATTT
1 TCTTAGAAGATTT
76609347 GATTTCGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (17 bp):
TCTTAGAAGATTTAAAA
Found at i:76611551 original size:35 final size:35
Alignment explanation
Indices: 76611507--76611672 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
76611497 TCCTCATTGA
** *
76611507 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
76611542 AATGCCATACCTACATTT-TTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
76611581 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
76611616 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
76611651 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
76611673 CTTTTCCATG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
34 12 0.10
35 75 0.65
38 2 0.02
39 18 0.16
40 9 0.08
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:76611592 original size:74 final size:73
Alignment explanation
Indices: 76611502--76611672 Score: 217
Period size: 74 Copynumber: 2.4 Consensus size: 73
76611492 GGTTTTCCTC
** * * **
76611502 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTT-TTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
76611565 TCAGTATGG
65 TCAGTATGG
*
76611574 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
76611639 CTCAGTATGG
64 CTCAGTATGG
76611649 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
76611673 CTTTTCCATG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
70 21 0.24
72 1 0.01
73 9 0.10
74 44 0.50
75 13 0.15
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:76619033 original size:35 final size:35
Alignment explanation
Indices: 76618989--76619154 Score: 192
Period size: 35 Copynumber: 4.6 Consensus size: 35
76618979 TCCTCATTGA
** *
76618989 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
76619024 AATGCCATACCTACATTT-TTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
76619063 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
76619098 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
76619133 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
76619155 CTTTCCATGG
Statistics
Matches: 116, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
34 12 0.10
35 75 0.65
38 2 0.02
39 18 0.16
40 9 0.08
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:76619074 original size:74 final size:73
Alignment explanation
Indices: 76618984--76619154 Score: 217
Period size: 74 Copynumber: 2.4 Consensus size: 73
76618974 GGTTTTCCTC
** * * **
76618984 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTT-TTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
76619047 TCAGTATGG
65 TCAGTATGG
*
76619056 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
76619121 CTCAGTATGG
64 CTCAGTATGG
76619131 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
76619155 CTTTCCATGG
Statistics
Matches: 88, Mismatches: 7, Indels: 10
0.84 0.07 0.10
Matches are distributed among these distances:
70 21 0.24
72 1 0.01
73 9 0.10
74 44 0.50
75 13 0.15
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:76625036 original size:49 final size:49
Alignment explanation
Indices: 76624857--76625036 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 49
76624847 TGGGATAAGA
* * * **
76624857 TGTCGACGCCATGTCCCAAACATGGTCTTACACTGGCTAGCA-C-ATCAA
1 TGTCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTATCATCTATCGG
* * ** * *
76624905 AGTCGATGCCATGTTCCAGACAGGTCTTACACTAACTTTCATATATCGAG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCG-G
* * * * * *
76624955 -GCCGATGTCGTGTCCCAGACAGGTCTTGCACTGGCTCTCATCTATTGG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
76625003 TGTCGATGCCATGTCCCAGACAGGTCTTACACTG
1 TGTCGATGCCATGTCCCAGACAGGTCTTACACTG
76625037 ACACACAACA
Statistics
Matches: 103, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
47 15 0.15
48 19 0.18
49 69 0.67
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (49 bp):
TGTCGATGCCATGTCCCAGACAGGTCTTACACTGGCTATCATCTATCGG
Found at i:76625170 original size:45 final size:44
Alignment explanation
Indices: 76625101--76625221 Score: 122
Period size: 46 Copynumber: 2.7 Consensus size: 44
76625091 CTCGAGGCTG
*
76625101 ATGCATGTCCCAAACATGTT-TTACACTAGCTTTGTC-TCAATAT-CA
1 ATGCATGTCCCAGACAT-TTCTTACACTAGC-TT-TCAT-AATATGCA
* * *
76625146 ATGCATGTCCCAGACATTTCTTACACTGGCTTTCATAATGTGGCCG
1 ATGCATGTCCCAGACATTTCTTACACTAGCTTTCATAATAT-G-CA
*
76625192 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATTTCTTACACTAGC
76625222 ACATATATCA
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 6 0.09
44 5 0.08
45 25 0.38
46 29 0.45
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (44 bp):
ATGCATGTCCCAGACATTTCTTACACTAGCTTTCATAATATGCA
Found at i:76631229 original size:24 final size:23
Alignment explanation
Indices: 76631180--76631229 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
76631170 GAGTTACCTG
**
76631180 TTAAACTTAATGAGCTTCCTGTT
1 TTAAACTTAATGAGCTTCCTAAT
* *
76631203 TTAAACTCTTATGAGTTTCCTAAT
1 TTAAACT-TAATGAGCTTCCTAAT
76631227 TTA
1 TTA
76631230 GCCTAGATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 7 0.32
24 15 0.68
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (23 bp):
TTAAACTTAATGAGCTTCCTAAT
Found at i:76637271 original size:2 final size:2
Alignment explanation
Indices: 76637264--76637302 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
76637254 TCTATTTCTC
76637264 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
76637303 ACTCAGATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:76637480 original size:18 final size:18
Alignment explanation
Indices: 76637436--76637480 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
76637426 AAATTAATGA
76637436 TAAAATT-AAAATAATTT
1 TAAAATTAAAAATAATTT
76637453 TAAAATTTAAAAATCAA-TT
1 TAAAA-TTAAAAAT-AATTT
76637472 TAAAATTAA
1 TAAAATTAA
76637481 GATAATAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
17 5 0.20
18 6 0.24
19 12 0.48
20 2 0.08
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (18 bp):
TAAAATTAAAAATAATTT
Found at i:76638074 original size:60 final size:60
Alignment explanation
Indices: 76638002--76638122 Score: 242
Period size: 60 Copynumber: 2.0 Consensus size: 60
76637992 TGAAATAAAA
76638002 ATAATTATAAAGAAAATTAATGGGATCTAAAATAGCCCAAATTTATTCGTAATAATTGTT
1 ATAATTATAAAGAAAATTAATGGGATCTAAAATAGCCCAAATTTATTCGTAATAATTGTT
76638062 ATAATTATAAAGAAAATTAATGGGATCTAAAATAGCCCAAATTTATTCGTAATAATTGTT
1 ATAATTATAAAGAAAATTAATGGGATCTAAAATAGCCCAAATTTATTCGTAATAATTGTT
76638122 A
1 A
76638123 CAGAGTTTTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (60 bp):
ATAATTATAAAGAAAATTAATGGGATCTAAAATAGCCCAAATTTATTCGTAATAATTGTT
Found at i:76638253 original size:28 final size:27
Alignment explanation
Indices: 76638202--76638258 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
76638192 ATATTATATT
**
76638202 TATAAAATAAATCAATATTTATTAATAA
1 TATAAAATAAATCAATATAAATTAA-AA
76638230 TATAAAATATAA-CAATATAAATTAAAA
1 TATAAAATA-AATCAATATAAATTAAAA
76638257 TA
1 TA
76638259 AAATTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 4 0.15
28 20 0.77
29 2 0.08
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (27 bp):
TATAAAATAAATCAATATAAATTAAAA
Found at i:76645443 original size:16 final size:17
Alignment explanation
Indices: 76645422--76645459 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
76645412 TTCTATATTG
*
76645422 ATTTTACT-TTTATTTT
1 ATTTTACTATGTATTTT
76645438 ATTTTACTACTGTATTTT
1 ATTTTACTA-TGTATTTT
76645456 ATTT
1 ATTT
76645460 AAATAAGGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
18 11 0.58
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.68
Consensus pattern (17 bp):
ATTTTACTATGTATTTT
Found at i:76645543 original size:29 final size:29
Alignment explanation
Indices: 76645506--76645586 Score: 144
Period size: 29 Copynumber: 2.8 Consensus size: 29
76645496 CACCTTGACA
*
76645506 CGAATTCTCAATGAACAAGTTCTTCATCG
1 CGAACTCTCAATGAACAAGTTCTTCATCG
*
76645535 CGAACTCTCAATGAACAAGTTCTTTATCG
1 CGAACTCTCAATGAACAAGTTCTTCATCG
76645564 CGAACTCTCAATGAACAAGTTCT
1 CGAACTCTCAATGAACAAGTTCT
76645587 CCACTTCTTC
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.30
Consensus pattern (29 bp):
CGAACTCTCAATGAACAAGTTCTTCATCG
Found at i:76654677 original size:40 final size:40
Alignment explanation
Indices: 76654622--76654909 Score: 418
Period size: 40 Copynumber: 7.2 Consensus size: 40
76654612 TGAATGATAC
* * *
76654622 CCGGGCTAAGCCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
* *
76654662 CCGGGTTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
76654702 CCGGGTTAAGACCCGAAGGCATTTGTGTGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
76654742 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
76654782 CTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* *
76654822 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * ** *
76654862 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
76654902 CC-GGCTAA
1 CCGGGCTAA
76654910 ATTTTGAAGA
Statistics
Matches: 226, Mismatches: 21, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
39 5 0.02
40 219 0.97
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:76659808 original size:40 final size:40
Alignment explanation
Indices: 76659762--76659890 Score: 145
Period size: 40 Copynumber: 3.2 Consensus size: 40
76659752 TGCTGGAAAT
* * *
76659762 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
* * *
76659802 TATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCGAGTTAT
1 TATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGAC
* * *
76659842 TCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGAT
1 TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGAC
76659882 TATATCCGG
1 TATATCCGG
76659891 TTATATTCCG
Statistics
Matches: 75, Mismatches: 11, Indels: 6
0.82 0.12 0.07
Matches are distributed among these distances:
39 4 0.05
40 69 0.92
41 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGAC
Found at i:76667229 original size:28 final size:28
Alignment explanation
Indices: 76667197--76667295 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
76667187 GCAATAAGCC
*
76667197 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
76667225 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
76667253 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
76667282 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76667296 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:76668979 original size:27 final size:27
Alignment explanation
Indices: 76668949--76669148 Score: 179
Period size: 27 Copynumber: 7.4 Consensus size: 27
76668939 GTGGCAAAAT
* *
76668949 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
76668976 GGTAATTCTACCCTAC-AGGGTTATTTT
1 GGTAATTTTACCCTACAAGGG-TATTTC
76669003 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* ** * *
76669030 GGTAATTCTGTCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
76669057 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
** * * *
76669084 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
76669111 AGTAATTCTACCTTACAAGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
76669138 GGTAATTTTAC
1 GGTAATTTTAC
76669149 AACTTATCCA
Statistics
Matches: 146, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.05
27 132 0.90
28 7 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:76669015 original size:54 final size:54
Alignment explanation
Indices: 76668950--76669144 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 54
76668940 TGGCAAAATG
* * * * **
76668950 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGTTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* ** *
76669004 GTATTTCTACCCTACAAGGGTATTTCGGTAATTCTGTCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
* * ** *
76669058 GTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
*
76669112 GTAATTCTACCTTACAAGGGTATTTCGGTAATT
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATT
76669145 TTACAACTTA
Statistics
Matches: 117, Mismatches: 24, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCA
Found at i:76669093 original size:81 final size:81
Alignment explanation
Indices: 76668963--76669144 Score: 238
Period size: 81 Copynumber: 2.2 Consensus size: 81
76668953 ATTTTACCCC
* * *** *
76668963 ACAAGGGTATCTCGGTAATTCTACCCTACAGGGTTATTTTGGTATTTCTACCCTACAAGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
* **
76669028 TCGGTAATTCTGTCTT
66 TCAGTAATTCTACCTT
* * * * *
76669044 ACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCAATAATTCTACCCTATAGGGGTATT
1 ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
76669109 TCAGTAATTCTACCTT
66 TCAGTAATTCTACCTT
76669125 ACAAGGGTATTTCGGTAATT
1 ACAAGGGTATTTCGGTAATT
76669145 TTACAACTTA
Statistics
Matches: 85, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
ACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAATAATTCTACCCTACAAGGGTATT
TCAGTAATTCTACCTT
Found at i:76675691 original size:40 final size:39
Alignment explanation
Indices: 76675647--76675839 Score: 251
Period size: 39 Copynumber: 4.9 Consensus size: 39
76675637 GTTCAAAACA
* * ** * *
76675647 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
76675687 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
76675727 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
76675766 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* *
76675805 CCTTCGGGCTTAGCCCGGATATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
76675840 TTCATTCACA
Statistics
Matches: 139, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 99 0.71
40 40 0.29
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.23
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:76675758 original size:39 final size:39
Alignment explanation
Indices: 76675677--76675839 Score: 263
Period size: 39 Copynumber: 4.2 Consensus size: 39
76675667 TATGGTAACC
* *
76675677 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
76675717 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76675756 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76675795 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
76675834 CGCACA
1 CGCACA
76675840 TTCATTCACA
Statistics
Matches: 116, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:76683730 original size:39 final size:39
Alignment explanation
Indices: 76683649--76683811 Score: 254
Period size: 39 Copynumber: 4.2 Consensus size: 39
76683639 TATGGTAACC
** *
76683649 CGCACAAACGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
76683689 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76683728 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
76683767 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
76683806 CGCACA
1 CGCACA
76683812 TTCATTCACA
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 99 0.86
40 16 0.14
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:76703794 original size:28 final size:27
Alignment explanation
Indices: 76703733--76703800 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
76703723 AGTGAGTCCA
76703733 CACACTTAGTGCTATATAATCAACTCG
1 CACACTTAGTGCTATATAATCAACTCG
*
76703760 CACACTTAGTGCTATATGATCAAACTCG
1 CACACTTAGTGCTATATAATC-AACTCG
76703788 CACACTTAGTGCT
1 CACACTTAGTGCT
76703801 GTACAAGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (27 bp):
CACACTTAGTGCTATATAATCAACTCG
Found at i:76706643 original size:19 final size:20
Alignment explanation
Indices: 76706609--76706651 Score: 70
Period size: 19 Copynumber: 2.1 Consensus size: 20
76706599 AGATTACAAG
76706609 ATCATATCTTTAAGATTGCAT
1 ATCATATC-TTAAGATTGCAT
76706630 ATCATATC-TAAGATTGCAT
1 ATCATATCTTAAGATTGCAT
76706649 ATC
1 ATC
76706652 CTTAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 14 0.64
21 8 0.36
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (20 bp):
ATCATATCTTAAGATTGCAT
Found at i:76707598 original size:166 final size:166
Alignment explanation
Indices: 76707335--76707786 Score: 595
Period size: 166 Copynumber: 2.7 Consensus size: 166
76707325 TCTGCTATAC
*
76707335 TTTAACCTGTTACCCTACTGCTTAGGGG-TTAA-GCGCA-TCTTCTTCGATCTGCTCTGCTACT-
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-AGTC-TC-TCGATCTGCTCCGCTACTG
* *
76707396 ATT-AGG-GATAAGATCTACAAATTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCTG-GTC
63 CTTAAGGAGATAAGATCTGC-AA--TAACCTGTTACCCTACTACTTAGGGGATTAAGGC-GAGTC
* *
76707458 TTCGATCTACTCTACTACTACTTAGGGAGATAAG-ATCTGTAAA
124 TTCGATCTACTCCACTACTACTTAGGGAGATAAGAAT-TGCAAA
* *
76707501 TTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTACTCCGCTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-TC-TCGATCTGCTCCGCTACTGC
76707566 TTAAGGAGATAAGATCTGC-A-AACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGA
64 TTAAGGAGATAAGATCTGCAATAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGA
* *
76707629 TCTGCTCCACTACTGCTTAGGGAGATAAGAATTGCAAA
129 TCTACTCCACTACTACTTAGGGAGATAAGAATTGCAAA
*
76707667 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGT-T-TCGATCTGCTCCACTACTGCTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTCTCGATCTGCTCCGCTACTGCTT
* *
76707730 AAGGAGATAAGATCTGCAAATTTAACTTGTTACCCTACTGCTTAGGGGATTAAGGCG
66 AAGGAGATAAGATCTGC-AA--TAACCTGTTACCCTACTACTTAGGGGATTAAGGCG
76707787 CTGAATTTTG
Statistics
Matches: 257, Mismatches: 16, Indels: 25
0.86 0.05 0.08
Matches are distributed among these distances:
162 37 0.14
164 2 0.01
165 1 0.00
166 138 0.54
167 39 0.15
168 23 0.09
169 3 0.01
170 3 0.01
171 11 0.04
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (166 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTCTCGATCTGCTCCGCTACTGCTT
AAGGAGATAAGATCTGCAATAACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATC
TACTCCACTACTACTTAGGGAGATAAGAATTGCAAA
Found at i:76707687 original size:43 final size:42
Alignment explanation
Indices: 76707638--76707776 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 42
76707628 ATCTGCTCCA
76707638 CTACTGCTTAGGGAGATAAGAATTGCAAATTTAACCTGTTACC
1 CTACTGCTTAGGGAGATAAG-ATTGCAAATTTAACCTGTTACC
* * * * *
76707681 CTACTGCTTAGGG-GATTAAG---GCGAGTTTCGATCTGCT-CC
1 CTACTGCTTAGGGAGA-TAAGATTGCAAATTT-AACCTGTTACC
* *
76707720 ACTACTGCTTAAGGAGATAAGATCTGCAAATTTAACTTGTTACC
1 -CTACTGCTTAGGGAGATAAGAT-TGCAAATTTAACCTGTTACC
76707764 CTACTGCTTAGGG
1 CTACTGCTTAGGG
76707777 GATTAAGGCG
Statistics
Matches: 74, Mismatches: 13, Indels: 18
0.70 0.12 0.17
Matches are distributed among these distances:
39 8 0.11
40 21 0.28
41 2 0.03
42 2 0.03
43 33 0.45
44 8 0.11
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (42 bp):
CTACTGCTTAGGGAGATAAGATTGCAAATTTAACCTGTTACC
Found at i:76707748 original size:83 final size:84
Alignment explanation
Indices: 76707335--76707786 Score: 588
Period size: 84 Copynumber: 5.4 Consensus size: 84
76707325 TCTGCTATAC
* ** *
76707335 TTTAACCTGTTACCCTACTGCTTAGGGG-TTAA-GCGCATCTTCTTCGATCTGCTCTGCTACT-A
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG-A--GTCTTCGATCTGCTCCACTACTGC
*
76707397 TT-AGG-GATAAGATCTACAAA
63 TTAAGGAGATAAGATCTGCAAA
* * * *
76707417 TTTAACCTGTTACCCTACTACTTAGGGGATTAAGGCTG-GTCTTCGATCTACTCTACTACTACTT
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC-GAGTCTTCGATCTGCTCCACTACTGCTT
* *
76707481 AGGGAGATAAGATCTGTAAA
65 AAGGAGATAAGATCTGCAAA
* * *
76707501 TTTAACCTATTACCCTACTGCTTAGGGGATTAAGGCGAGTCGTCGTCGATCTACTCCGCTACTGC
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTC-T--TCGATCTGCTCCACTACTGC
76707566 TTAAGGAGATAAGATCTGC--A
63 TTAAGGAGATAAGATCTGCAAA
*
76707586 ---AACCTGTTACCCTACTACTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
*
76707648 GGGAGATAAGAAT-TGCAAA
66 AGGAGATAAG-ATCTGCAAA
76707667 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGT-TTCGATCTGCTCCACTACTGCTTA
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
76707731 AGGAGATAAGATCTGCAAA
66 AGGAGATAAGATCTGCAAA
*
76707750 TTTAACTTGTTACCCTACTGCTTAGGGGATTAAGGCG
1 TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCG
76707787 CTGAATTTTG
Statistics
Matches: 330, Mismatches: 23, Indels: 33
0.85 0.06 0.09
Matches are distributed among these distances:
79 33 0.10
80 2 0.01
81 21 0.06
82 67 0.20
83 82 0.25
84 88 0.27
85 3 0.01
87 34 0.10
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (84 bp):
TTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGCGAGTCTTCGATCTGCTCCACTACTGCTTA
AGGAGATAAGATCTGCAAA
Found at i:76708732 original size:1 final size:1
Alignment explanation
Indices: 76708726--76708782 Score: 69
Period size: 1 Copynumber: 57.0 Consensus size: 1
76708716 GGCCTCTCCA
* * * **
76708726 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCTTTTCTTTTTTTCCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
76708783 GAAATAGAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (1 bp):
T
Found at i:76714419 original size:22 final size:21
Alignment explanation
Indices: 76714389--76714454 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
76714379 TACAAATTAA
76714389 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
76714411 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
76714432 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
76714451 ATCT
1 ATCT
76714455 AAGATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:76714441 original size:19 final size:19
Alignment explanation
Indices: 76714406--76714502 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
76714396 AGATTACAAG
76714406 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
76714427 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76714446 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
76714463 ATCATATCT-AGATTGCAT
1 ATCATATCTAAGATTGCAT
76714481 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
76714500 ATC
1 ATC
76714503 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 0, Indels: 8
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.08
17 10 0.14
18 10 0.14
19 38 0.52
20 1 0.01
21 8 0.11
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:76714447 original size:35 final size:37
Alignment explanation
Indices: 76714406--76714502 Score: 153
Period size: 35 Copynumber: 2.6 Consensus size: 37
76714396 AGATTACAAG
76714406 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTGCATATCATATCT-AGATTGCAT
76714446 ATCATATCTAAGATTG--TATCATATCTAGATTGCAT
1 ATCATATCTAAGATTGCATATCATATCTAGATTGCAT
76714481 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATC
76714503 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 0, Indels: 7
0.89 0.00 0.11
Matches are distributed among these distances:
35 25 0.45
36 10 0.18
37 4 0.07
38 7 0.13
39 1 0.02
40 8 0.15
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
ATCATATCTAAGATTGCATATCATATCTAGATTGCAT
Found at i:76715723 original size:70 final size:70
Alignment explanation
Indices: 76715641--76715906 Score: 284
Period size: 70 Copynumber: 3.8 Consensus size: 70
76715631 AATCTTATTG
* * * * * *
76715641 ATTATTTGACTAGTGTTAGGCACAATTATCGTTGGTTTATCCAACTAGCGTTGGGCGCAAAACAC
1 ATTATTCGACTAGTGCTAGGCACAATTATCGTTGGCTTATCCAACTAGCGCTGGGCGTAAAACAT
76715706 CATCA
66 CATCA
* * * * * *
76715711 ATTATTCAACTAGTGCTAGCCACACTTATTGTTGGCTTATCCAACTAGCACTGGGCGTAAAAAAT
1 ATTATTCGACTAGTGCTAGGCACAATTATCGTTGGCTTATCCAACTAGCGCTGGGCGTAAAACAT
* *
76715776 CTTCG
66 CATCA
** * * * *
76715781 ATTATTCGACTAGTATTGGGCACACTTATCGTTGGCTTATCCAATTATCGCTGGGCGTAAAACAT
1 ATTATTCGACTAGTGCTAGGCACAATTATCGTTGGCTTATCCAACTAGCGCTGGGCGTAAAACAT
*
76715846 TATCA
66 CATCA
* * *
76715851 ATTATTTGACTAGTGCTGGGCA-AACTTATCGTTGG-TATATCCAACTAGTGCTGGGC
1 ATTATTCGACTAGTGCTAGGCACAA-TTATCGTTGGCT-TATCCAACTAGCGCTGGGC
76715907 TCAAAGAGAT
Statistics
Matches: 160, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
69 2 0.01
70 158 0.99
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (70 bp):
ATTATTCGACTAGTGCTAGGCACAATTATCGTTGGCTTATCCAACTAGCGCTGGGCGTAAAACAT
CATCA
Found at i:76715906 original size:140 final size:140
Alignment explanation
Indices: 76715640--76715898 Score: 349
Period size: 140 Copynumber: 1.9 Consensus size: 140
76715630 AAATCTTATT
* * * *
76715640 GATTATTTGACTAGTGTTAGGCACAATTATCGTTGGTTTATCCAACTAGCGTTGGGCGCAAAACA
1 GATTATTCGACTAGTATTAGGCACAATTATCGTTGGCTTATCCAACTAGCGCTGGGCGCAAAACA
* *
76715705 CCATCAATTATTCAACTAGTGCTAGCCACACTTATTGTTGGCTTATCCAACTAGCACTGGGCGTA
66 CCATCAATTATTCAACTAGTGCTAGCCAAACTTATCGTTGGCTTATCCAACTAGCACTGGGCGTA
76715770 AAAAATCTTC
131 AAAAATCTTC
* * * * *
76715780 GATTATTCGACTAGTATTGGGCACACTTATCGTTGGCTTATCCAATTATCGCTGGGCGTAAAACA
1 GATTATTCGACTAGTATTAGGCACAATTATCGTTGGCTTATCCAACTAGCGCTGGGCGCAAAACA
** ** * *
76715845 TTATCAATTATTTGACTAGTGCTGGGCAAACTTATCGTTGG-TATATCCAACTAG
66 CCATCAATTATTCAACTAGTGCTAGCCAAACTTATCGTTGGCT-TATCCAACTAG
76715899 TGCTGGGCTC
Statistics
Matches: 101, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
139 1 0.01
140 100 0.99
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (140 bp):
GATTATTCGACTAGTATTAGGCACAATTATCGTTGGCTTATCCAACTAGCGCTGGGCGCAAAACA
CCATCAATTATTCAACTAGTGCTAGCCAAACTTATCGTTGGCTTATCCAACTAGCACTGGGCGTA
AAAAATCTTC
Found at i:76719161 original size:36 final size:36
Alignment explanation
Indices: 76719110--76719182 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
76719100 CCACATGGTC
*
76719110 ATGTGGCCCACACGGCCCAAATAGCCTAGCGAACTT
1 ATGTGGCCCACACGGCCCAAATAGCCTAGCAAACTT
*
76719146 ATGTGGCCCATACGGCCCAAATAGCCTAGCAAACTT
1 ATGTGGCCCACACGGCCCAAATAGCCTAGCAAACTT
76719182 A
1 A
76719183 CCCCACAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.18
Consensus pattern (36 bp):
ATGTGGCCCACACGGCCCAAATAGCCTAGCAAACTT
Found at i:76727040 original size:40 final size:38
Alignment explanation
Indices: 76726985--76727138 Score: 146
Period size: 40 Copynumber: 3.9 Consensus size: 38
76726975 GATACACCAG
* *
76726985 CACAAAGCCTGCTAGGCATCAAGCCCGATAACTAGATTGA
1 CACAAAGCCTGCTAGGCA-CAAGCCCGATAAATACA-TGA
**
76727025 CACAAAGCCTGCTAGGCACTAAGCCCGATAAATACACCA
1 CACAAAGCCTGCTAGGCAC-AAGCCCGATAAATACATGA
* * * * *
76727064 GCACAAAGCCTGCTAGGCATAAATCCCTATAATTACACTGG
1 -CACAAAGCCTGCTAGGCA-CAAGCCCGATAAATACA-TGA
** *
76727105 TGCAAAGCTTGCTAGGCACAAGCCCGATAAATAC
1 CACAAAGCCTGCTAGGCACAAGCCCGATAAATAC
76727139 TCAATACAAG
Statistics
Matches: 92, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
39 14 0.15
40 78 0.85
ACGTcount: A:0.36, C:0.29, G:0.18, T:0.18
Consensus pattern (38 bp):
CACAAAGCCTGCTAGGCACAAGCCCGATAAATACATGA
Found at i:76727111 original size:80 final size:79
Alignment explanation
Indices: 76726976--76727138 Score: 227
Period size: 80 Copynumber: 2.1 Consensus size: 79
76726966 AGACAATTTG
* * *
76726976 ATACACCAGCACAAAGCCTGCTAGGCATCAAGCCCGATAACTAGATTGACACAAAGCCTGCTAGG
1 ATACACCAGCACAAAGCCTGCTAGGCATAAAGCCCGATAACTACACTGACACAAAGCCTGCTAGG
76727041 CACTAAGCCCGATAA
66 CAC-AAGCCCGATAA
* * * *** *
76727056 ATACACCAGCACAAAGCCTGCTAGGCATAAATCCCTATAATTACACTGGTGCAAAGCTTGCTAGG
1 ATACACCAGCACAAAGCCTGCTAGGCATAAAGCCCGATAACTACACTGACACAAAGCCTGCTAGG
76727121 CACAAGCCCGATAA
66 CACAAGCCCGATAA
76727135 ATAC
1 ATAC
76727139 TCAATACAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
79 15 0.21
80 58 0.79
ACGTcount: A:0.36, C:0.29, G:0.18, T:0.17
Consensus pattern (79 bp):
ATACACCAGCACAAAGCCTGCTAGGCATAAAGCCCGATAACTACACTGACACAAAGCCTGCTAGG
CACAAGCCCGATAA
Found at i:76728740 original size:17 final size:16
Alignment explanation
Indices: 76728701--76728740 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
76728691 TATTATTTTA
*
76728701 TTTTTATTTTTTGTTC
1 TTTTTATTTTTTATTC
*
76728717 TTGTTATTTTATTATTC
1 TTTTTATTTT-TTATTC
76728734 TTTTTAT
1 TTTTTAT
76728741 CATTCTTGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
16 9 0.45
17 11 0.55
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.78
Consensus pattern (16 bp):
TTTTTATTTTTTATTC
Found at i:76729850 original size:16 final size:16
Alignment explanation
Indices: 76729825--76729861 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
76729815 TTAAGTCATA
76729825 TAAT-TAACTCTTTAT
1 TAATATAACTCTTTAT
76729840 TAATATAACTCTTTAT
1 TAATATAACTCTTTAT
76729856 TAATAT
1 TAATAT
76729862 TTAACACATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (16 bp):
TAATATAACTCTTTAT
Found at i:76734697 original size:151 final size:151
Alignment explanation
Indices: 76734423--76734725 Score: 554
Period size: 151 Copynumber: 2.0 Consensus size: 151
76734413 CATCTTGACC
*
76734423 GTCAGCTTGTGTGAGCAGACCCGTTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGA
1 GTCAGCTTGTGTGAGCAAACCCGTTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGA
* * *
76734488 GATAACTTTGGCTATGTATTGGCACTTGGGGTGTGAGATTCCTGAGTATCTGATATTAATTCAAA
66 AATAACTTTGGCTATGTATTGGCACTTAGGGTGTGAGATTCCCGAGTATCTGATATTAATTCAAA
76734553 TAGTTCAACAGGTATATCGAT
131 TAGTTCAACAGGTATATCGAT
76734574 GTCAGCTTGTGTGAGCAAACCCGTTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGA
1 GTCAGCTTGTGTGAGCAAACCCGTTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGA
76734639 AATAACTTTGGCTATGTATTGGCACTTAGGGTGT-ACGATTCCCGAGTATCTGATATTAATTCAA
66 AATAACTTTGGCTATGTATTGGCACTTAGGGTGTGA-GATTCCCGAGTATCTGATATTAATTCAA
76734703 ATAGTTCAACAGGTATATCGAT
130 ATAGTTCAACAGGTATATCGAT
76734725 G
1 G
76734726 AATTGAAAGA
Statistics
Matches: 147, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
150 1 0.01
151 146 0.99
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (151 bp):
GTCAGCTTGTGTGAGCAAACCCGTTGATAGCTCGAGAGTGAGCATTATATGAGATATGAGATTGA
AATAACTTTGGCTATGTATTGGCACTTAGGGTGTGAGATTCCCGAGTATCTGATATTAATTCAAA
TAGTTCAACAGGTATATCGAT
Found at i:76741531 original size:21 final size:21
Alignment explanation
Indices: 76741505--76741544 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
76741495 GGCCATATGG
*
76741505 CTACTTCACACGTCCGTGTGA
1 CTACTTCACACGCCCGTGTGA
76741526 CTACTTCACACGCCCGTGT
1 CTACTTCACACGCCCGTGT
76741545 ACGCTAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.38, G:0.17, T:0.28
Consensus pattern (21 bp):
CTACTTCACACGCCCGTGTGA
Found at i:76742003 original size:19 final size:19
Alignment explanation
Indices: 76741963--76742005 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
76741953 AGATAGATCA
*
76741963 CATATACAATAAATATTGC
1 CATATACAATAAATACTGC
*
76741982 CATATACACATCAATACT-C
1 CATATACA-ATAAATACTGC
76742001 CATAT
1 CATAT
76742006 TTCCATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.44, C:0.23, G:0.02, T:0.30
Consensus pattern (19 bp):
CATATACAATAAATACTGC
Found at i:76742481 original size:40 final size:40
Alignment explanation
Indices: 76742383--76742563 Score: 159
Period size: 40 Copynumber: 4.5 Consensus size: 40
76742373 TGATACACTA
** * * *
76742383 GCACAAAGCCTGCTAGGCAC-ATAGCCCGATAAAATACACTG
1 GCACAAAGGTTGCTAGGCACTA-AGCCTGAT-AAACACACCG
* ** *
76742424 GCACGAAGCCTGCTAGGCACTAAGCTTGATAAACACACCG
1 GCACAAAGGTTGCTAGGCACTAAGCCTGATAAACACACCG
* * * *
76742464 GCACAAAGGTTGTTAGGCACTAAGCCCGATAAATACACTG
1 GCACAAAGGTTGCTAGGCACTAAGCCTGATAAACACACCG
* ** *
76742504 GCACAAAGGCTGCTAGGCAGAAAGCCTGAT-AACTACATCG
1 GCACAAAGGTTGCTAGGCACTAAGCCTGATAAAC-ACACCG
*
76742544 GCACAAAGCTTGCTAGGCAC
1 GCACAAAGGTTGCTAGGCAC
76742564 AGAACCCAAT
Statistics
Matches: 114, Mismatches: 24, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.02
40 86 0.75
41 25 0.22
42 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.23, T:0.16
Consensus pattern (40 bp):
GCACAAAGGTTGCTAGGCACTAAGCCTGATAAACACACCG
Found at i:76742534 original size:80 final size:81
Alignment explanation
Indices: 76742383--76742564 Score: 244
Period size: 80 Copynumber: 2.3 Consensus size: 81
76742373 TGATACACTA
* * *
76742383 GCACAAAGCCTGCTAGGCACATAGCCCGATAAAATACACTGGCACGAAGCCTGCTAGGCACTAAG
1 GCACAAAGCTTGCTAGGCACATAGCCCGATAAAATACACTGGCACAAAGCCTGCTAGGCACAAAG
*
76742448 CTTGATAAAC-ACACCG
66 CCTGAT-AACTACACCG
* * * *
76742464 GCACAAAGGTTGTTAGGCAC-TAAGCCCGAT-AAATACACTGGCACAAAGGCTGCTAGGCAGAAA
1 GCACAAAGCTTGCTAGGCACAT-AGCCCGATAAAATACACTGGCACAAAGCCTGCTAGGCACAAA
*
76742527 GCCTGATAACTACATCG
65 GCCTGATAACTACACCG
76742544 GCACAAAGCTTGCTAGGCACA
1 GCACAAAGCTTGCTAGGCACA
76742565 GAACCCAATA
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
79 3 0.03
80 59 0.68
81 25 0.29
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.16
Consensus pattern (81 bp):
GCACAAAGCTTGCTAGGCACATAGCCCGATAAAATACACTGGCACAAAGCCTGCTAGGCACAAAG
CCTGATAACTACACCG
Found at i:76744852 original size:23 final size:24
Alignment explanation
Indices: 76744826--76744876 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 24
76744816 CAAAAAAAAT
* * *
76744826 AAAATATATTCTAAAAA-AAGAGG
1 AAAACATAATCTAAAAATAAGAAG
*
76744849 AAAACCTAATCTAAAAATAAGAAG
1 AAAACATAATCTAAAAATAAGAAG
76744873 AAAA
1 AAAA
76744877 AAAAAGCTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.65, C:0.08, G:0.10, T:0.18
Consensus pattern (24 bp):
AAAACATAATCTAAAAATAAGAAG
Found at i:76745919 original size:35 final size:35
Alignment explanation
Indices: 76745870--76746020 Score: 187
Period size: 35 Copynumber: 4.3 Consensus size: 35
76745860 AATTTTGTAC
**
76745870 AATACTTATAGCTCGTGTATTGTTACAACTCACAT
1 AATACTTATAGCTCGTGTATCATTACAACTCACAT
* * *
76745905 AATACTTATCGCTCGTGTATCATTACAACTCATAC
1 AATACTTATAGCTCGTGTATCATTACAACTCACAT
* *
76745940 AATACTTATAGCTCGTGTATCGTTACATCTCACAT
1 AATACTTATAGCTCGTGTATCATTACAACTCACAT
* ** *
76745975 AATAGTTAT-GACTCACGTATCACTACAACTCACAT
1 AATACTTATAG-CTCGTGTATCATTACAACTCACAT
76746010 AATACTTATAG
1 AATACTTATAG
76746021 TTTGCATGTT
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
34 1 0.01
35 95 0.98
36 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (35 bp):
AATACTTATAGCTCGTGTATCATTACAACTCACAT
Found at i:76745941 original size:70 final size:70
Alignment explanation
Indices: 76745867--76746020 Score: 220
Period size: 70 Copynumber: 2.2 Consensus size: 70
76745857 TACAATTTTG
* ** *
76745867 TACAATACTTATAGCTCGTGTATTGTTACAACTCACATAATACTTATCG-CTCGTGTATCATTAC
1 TACAATACTTATAGCTCGTGTATCGTTACAACTCACATAATACTTAT-GACTCACGTATCACTAC
76745931 AACTCA
65 AACTCA
* *
76745937 TACAATACTTATAGCTCGTGTATCGTTACATCTCACATAATAGTTATGACTCACGTATCACTACA
1 TACAATACTTATAGCTCGTGTATCGTTACAACTCACATAATACTTATGACTCACGTATCACTACA
76746002 ACTCA
66 ACTCA
* *
76746007 CATAATACTTATAG
1 TACAATACTTATAG
76746021 TTTGCATGTT
Statistics
Matches: 75, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
69 1 0.01
70 74 0.99
ACGTcount: A:0.33, C:0.23, G:0.10, T:0.34
Consensus pattern (70 bp):
TACAATACTTATAGCTCGTGTATCGTTACAACTCACATAATACTTATGACTCACGTATCACTACA
ACTCA
Found at i:76750801 original size:11 final size:10
Alignment explanation
Indices: 76750783--76750811 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
76750773 TAATCTGATA
76750783 TCTTTTTTTT
1 TCTTTTTTTT
76750793 TCTTTTTTTT
1 TCTTTTTTTT
76750803 TCTTTTTTT
1 TCTTTTTTT
76750812 AAACTGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TCTTTTTTTT
Found at i:76751955 original size:23 final size:23
Alignment explanation
Indices: 76751881--76751968 Score: 69
Period size: 21 Copynumber: 4.0 Consensus size: 23
76751871 TACCTGATCA
*
76751881 AAATACGACACATAA-GTGCCTG
1 AAATACGACACACAAGGTGCCTG
* *
76751903 -AA-ACGACACACGAGGTACCTG
1 AAATACGACACACAAGGTGCCTG
* * *
76751924 --CTGCAACACACAAGGTGCCTG
1 AAATACGACACACAAGGTGCCTG
* *
76751945 AAATACGACACATAAAGTGCCTG
1 AAATACGACACACAAGGTGCCTG
76751968 A
1 A
76751969 TCAGTAAAGC
Statistics
Matches: 49, Mismatches: 13, Indels: 7
0.71 0.19 0.10
Matches are distributed among these distances:
20 9 0.18
21 23 0.47
23 17 0.35
ACGTcount: A:0.39, C:0.26, G:0.20, T:0.15
Consensus pattern (23 bp):
AAATACGACACACAAGGTGCCTG
Found at i:76762985 original size:23 final size:24
Alignment explanation
Indices: 76762956--76763048 Score: 89
Period size: 28 Copynumber: 3.5 Consensus size: 24
76762946 GGGTGTTACA
76762956 AAAACACACCAG-TATAATCCTCC
1 AAAACACACCAGATATAATCCTCC
76762979 AAAACACACCAGTATCATATAATCCTCC
1 AAAACACACCAG----ATATAATCCTCC
*
76763007 CAAACACACCAGAATAATATAATCCATCC
1 AAAACACACCAG----ATATAATCC-TCC
76763036 AAAACACACCAGA
1 AAAACACACCAGA
76763049 ATAGCACAAA
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
23 12 0.20
25 1 0.02
28 33 0.55
29 14 0.23
ACGTcount: A:0.47, C:0.32, G:0.04, T:0.16
Consensus pattern (24 bp):
AAAACACACCAGATATAATCCTCC
Found at i:76763050 original size:29 final size:28
Alignment explanation
Indices: 76762968--76763051 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
76762958 AACACACCAG
* *
76762968 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
*
76762996 TATAATCCTCCCAAACACACCAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
76763024 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
76763052 GCACAAAGTG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.46, C:0.31, G:0.04, T:0.19
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:76773955 original size:31 final size:32
Alignment explanation
Indices: 76773865--76773974 Score: 106
Period size: 31 Copynumber: 3.5 Consensus size: 32
76773855 GGTTTTGAAA
* *
76773865 TATCAGGTACTATGTATTGG-T-ATTCATATTG
1 TATCAGGTACTATGTATTGGATGAAT-ATATTT
* *
76773896 TCTCAGGCA-TAATGT-TTGGATGAATATATTT
1 TATCAGGTACT-ATGTATTGGATGAATATATTT
*
76773927 TATCTA-GTACTATGTATTGG-TGATTATATTT
1 TATC-AGGTACTATGTATTGGATGAATATATTT
76773958 TATCAGGTACTATGTAT
1 TATCAGGTACTATGTAT
76773975 CAGTGTTCAT
Statistics
Matches: 65, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
30 6 0.09
31 51 0.78
32 8 0.12
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.45
Consensus pattern (32 bp):
TATCAGGTACTATGTATTGGATGAATATATTT
Found at i:76773987 original size:31 final size:31
Alignment explanation
Indices: 76773921--76774057 Score: 111
Period size: 31 Copynumber: 4.4 Consensus size: 31
76773911 TTGGATGAAT
**
76773921 ATATTTTATCTA-GTACTATGTATTGGTGATT-
1 ATATTTTATC-AGGTACTATGTATCAGTG-TTC
76773952 ATATTTTATCAGGTACTATGTATCAGTGTTC
1 ATATTTTATCAGGTACTATGTATCAGTGTTC
* * * *
76773983 ATATTGTATCAGGCACAATATGT-TGA-TGTTT
1 ATATTTTATCAGGTAC--TATGTATCAGTGTTC
* **
76774014 ATATTTTATCAAGTACTATGTGCCAGTGTTC
1 ATATTTTATCAGGTACTATGTATCAGTGTTC
*
76774045 ATTATCTTATCAG
1 A-TATTTTATCAG
76774058 TGGTTGAGAT
Statistics
Matches: 85, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
29 5 0.06
30 4 0.05
31 60 0.71
32 11 0.13
33 5 0.06
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (31 bp):
ATATTTTATCAGGTACTATGTATCAGTGTTC
Found at i:76774029 original size:93 final size:93
Alignment explanation
Indices: 76773865--76774034 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
76773855 GGTTTTGAAA
** * * *
76773865 TATCAGGTACTATGTATTGGTATTCATATTGTCTCAGGCATAATGTTTGGATGAATATATTTTAT
1 TATCAGGTACTATGTATCAGTATTCATATTGTATCAGGCACAATATTTGGATGAATATATTTTAT
*
76773930 CTAGTACTATGTATTGGTGATTATATTT
66 CAAGTACTATGTATTGGTGATTATATTT
* **
76773958 TATCAGGTACTATGTATCAGTGTTCATATTGTATCAGGCACAATATGTT-GATGTTTATATTTTA
1 TATCAGGTACTATGTATCAGTATTCATATTGTATCAGGCACAATAT-TTGGATGAATATATTTTA
76774022 TCAAGTACTATGT
65 TCAAGTACTATGT
76774035 GCCAGTGTTC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
93 65 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.10, G:0.18, T:0.45
Consensus pattern (93 bp):
TATCAGGTACTATGTATCAGTATTCATATTGTATCAGGCACAATATTTGGATGAATATATTTTAT
CAAGTACTATGTATTGGTGATTATATTT
Found at i:76780609 original size:2 final size:2
Alignment explanation
Indices: 76780602--76780630 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
76780592 TAGAATTAAA
76780602 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
76780631 AAGTTATGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:76783673 original size:2 final size:2
Alignment explanation
Indices: 76783660--76783689 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
76783650 GCTTATATGT
*
76783660 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76783690 CATGTATGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:76798318 original size:19 final size:19
Alignment explanation
Indices: 76798294--76798337 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
76798284 CACACAAAGC
76798294 TCAGCCCCACGCCCCAACA
1 TCAGCCCCACGCCCCAACA
* *
76798313 TCAGCCCTATGCCCCAACA
1 TCAGCCCCACGCCCCAACA
76798332 TCAGCC
1 TCAGCC
76798338 GACCACCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.25, C:0.52, G:0.11, T:0.11
Consensus pattern (19 bp):
TCAGCCCCACGCCCCAACA
Found at i:76800053 original size:6 final size:6
Alignment explanation
Indices: 76800044--76800077 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
76800034 TTGCTTTTCC
*
76800044 TTTTAT TTTTAT TTTTAT TTTTAT TTCTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
76800078 CCTGTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:76800059 original size:18 final size:18
Alignment explanation
Indices: 76800038--76800085 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
76800028 TTTATTTTGC
*
76800038 TTTTCCTTTTATTTTTAT
1 TTTTCCTTTTATTTCTAT
**
76800056 TTTTATTTTTATTTCTAT
1 TTTTCCTTTTATTTCTAT
76800074 TTTTCCTGTTTA
1 TTTTCCT-TTTA
76800086 AAAAAAGAGT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.12, C:0.10, G:0.02, T:0.75
Consensus pattern (18 bp):
TTTTCCTTTTATTTCTAT
Found at i:76800405 original size:18 final size:18
Alignment explanation
Indices: 76800363--76800407 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
76800353 GTGGAACCTA
*
76800363 ACCTCTACCACCACCTTC
1 ACCTCTGCCACCACCTTC
*
76800381 ACCTCTGCCACCATCTTC
1 ACCTCTGCCACCACCTTC
76800399 ACCTCTGCC
1 ACCTCTGCC
76800408 TAGTTCCACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.18, C:0.53, G:0.04, T:0.24
Consensus pattern (18 bp):
ACCTCTGCCACCACCTTC
Found at i:76802106 original size:29 final size:28
Alignment explanation
Indices: 76802066--76802168 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
76802056 GTGACGAGAT
* *
76802066 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* * *
76802095 CGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* *
76802124 TGGCACTATGTGTGCGGGCTTGAATCATA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
76802153 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76802169 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
28 3 0.05
29 57 0.93
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Done.