Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 252 of 325
Found at i:79091504 original size:27 final size:27
Alignment explanation
Indices: 79091401--79091505 Score: 72
Period size: 27 Copynumber: 3.9 Consensus size: 27
79091391 GGGTACTTTG
* * *
79091401 GTAATTTTACAAGTCGAAG-GTATTTCG
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
79091428 GTAAATTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
79091455 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
79091482 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
79091506 CTAAACAGGG
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
26 2 0.03
27 52 0.84
28 8 0.13
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:79094585 original size:23 final size:23
Alignment explanation
Indices: 79094521--79094683 Score: 213
Period size: 23 Copynumber: 7.0 Consensus size: 23
79094511 GCTTTATCAT
* *
79094521 ATAACTGGAGGCCT-AGCCTCTTTT
1 ATAACTGG-GGCATAAGCC-CTTTG
*
79094545 AGTAACTGGGGCAAAAGCCCTTTTG
1 A-TAACTGGGGCATAAGCCC-TTTG
* *
79094570 ATCACT-GGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTG
79094592 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCC-TTTG
*
79094616 ATAACTGGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTG
79094639 ATAACTGGGGCATAAGCCCTTTG
1 ATAACTGGGGCATAAGCCCTTTG
79094662 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
79094684 TGCACTTCCT
Statistics
Matches: 124, Mismatches: 10, Indels: 11
0.86 0.07 0.08
Matches are distributed among these distances:
22 8 0.06
23 70 0.56
24 31 0.25
25 15 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTG
Found at i:79094600 original size:46 final size:47
Alignment explanation
Indices: 79094542--79094683 Score: 243
Period size: 46 Copynumber: 3.1 Consensus size: 47
79094532 CCTAGCCTCT
* * *
79094542 TTTAGTAACTGGGGCAAAAGCCCTTTTGATCACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
79094588 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
79094635 TTTAATAACTGGGGCATAAGCCC-TTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
79094681 TTT
1 TTT
79094684 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
46 57 0.62
47 35 0.38
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:79094621 original size:70 final size:71
Alignment explanation
Indices: 79094521--79094685 Score: 230
Period size: 70 Copynumber: 2.3 Consensus size: 71
79094511 GCTTTATCAT
* * *
79094521 ATAACTGGAGGCCT-AGCCTCTTTT-AGTAACTGGGGCAAAAGCCCTTTTGATCACT-GGGCATA
1 ATAACTGG-GGCATAAGCC-CTTTTGAGTAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCATA
79094583 AGCCCTTTA
63 AGCCCTTTA
*
79094592 ATAACTGGGGCATAAGCCCTTTTGA-TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGAGTAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGC
*
79094656 CCTTTG
66 CCTTTA
79094662 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79094686 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
69 8 0.09
70 65 0.76
71 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCATAAGCCCTTTTGAGTAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGC
CCTTTA
Found at i:79094756 original size:9 final size:9
Alignment explanation
Indices: 79094742--79094798 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79094732 ATCTCATGTG
79094742 CATATCATA
1 CATATCATA
*
79094751 CATATCATGTG
1 CATATCA--TA
79094762 CATATCATA
1 CATATCATA
* *
79094771 CATGTCATGTG
1 CATATCA--TA
79094782 CATATCATA
1 CATATCATA
79094791 CATATCAT
1 CATATCAT
79094799 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:79094758 original size:20 final size:20
Alignment explanation
Indices: 79094730--79094800 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
79094720 GCATTTATGA
*
79094730 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79094750 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
79094770 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79094790 ACATATCATGT
1 ACATATCATGT
79094801 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79094765 original size:11 final size:11
Alignment explanation
Indices: 79094735--79094789 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79094725 TATGAACATC
79094735 TCATGTGCATA
1 TCATGTGCATA
*
79094746 TCA--TACATA
1 TCATGTGCATA
79094755 TCATGTGCATA
1 TCATGTGCATA
* *
79094766 TCA--TACATG
1 TCATGTGCATA
79094775 TCATGTGCATA
1 TCATGTGCATA
79094786 TCAT
1 TCAT
79094790 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79094865 original size:25 final size:25
Alignment explanation
Indices: 79094837--79094884 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79094827 ATGTATAAAC
* * *
79094837 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
79094862 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
79094885 CATATTACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:79095795 original size:27 final size:27
Alignment explanation
Indices: 79095765--79095829 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
79095755 GGGCATATTC
79095765 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
79095792 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
79095819 GTCTTTTTACC
1 GTCATTTTACC
79095830 TTTTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:79095913 original size:27 final size:27
Alignment explanation
Indices: 79095883--79096112 Score: 129
Period size: 27 Copynumber: 8.4 Consensus size: 27
79095873 GTAAATCAAC
* *
79095883 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
79095910 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * * *
79095938 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* * * * *
79095966 AAATCAGGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
79095993 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
79096020 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * * *
79096047 AAACTAGGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *** * *
79096074 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
79096101 AAATCAAGGGTA
1 AAACCAAGGGTA
79096113 AAATAGTAAT
Statistics
Matches: 165, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
27 137 0.83
28 14 0.08
29 14 0.08
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:79096085 original size:54 final size:54
Alignment explanation
Indices: 79095863--79096083 Score: 178
Period size: 54 Copynumber: 4.0 Consensus size: 54
79095853 CATCCTACAA
* * ** * * * * *
79095863 GGGTGTTTTGGTAAATCAACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCAG
* * * * *
79095917 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGTAAATCAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTT-TAGTAATTTTGTAAATCAG
* * * * **
79095973 GGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATC-AG
*
79096027 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTGTAAATCGAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATC-AG
79096082 GG
1 GG
79096084 TAAAACAGTA
Statistics
Matches: 127, Mismatches: 32, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
53 2 0.02
54 74 0.58
55 18 0.14
56 33 0.26
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCAG
Found at i:79096113 original size:27 final size:27
Alignment explanation
Indices: 79096063--79096273 Score: 252
Period size: 27 Copynumber: 7.9 Consensus size: 27
79096053 GGGGTATTTT
*
79096063 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
79096090 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
79096117 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
79096144 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
79096171 -GATAATTCTGTAAGTCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
*
79096198 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
79096225 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
*
79096252 GGTAATTCTGTAAATCG-GGGTA
1 AGTAATTCTGTAAATCGAGGGTA
79096274 CTTTGGTAAT
Statistics
Matches: 166, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
26 7 0.04
27 158 0.95
28 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:79096308 original size:27 final size:25
Alignment explanation
Indices: 79096270--79096367 Score: 88
Period size: 27 Copynumber: 3.7 Consensus size: 25
79096260 TGTAAATCGG
79096270 GGTACTTTGGTAATTTTACAAGTCGAA
1 GGTA-TTTGGTAATTTTACAA-TCGAA
* *
79096297 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTT-GGTAATTTTAC-AATCGAA
* * * *
79096324 GGTATTTAGTATTTTTACAAACTAA
1 GGTATTTGGTAATTTTACAATCGAA
79096349 GGGTATTTCGGTAATTTTA
1 -GGTATTT-GGTAATTTTA
79096368 GTAAACTAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
25 4 0.07
26 18 0.32
27 33 0.58
28 2 0.04
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (25 bp):
GGTATTTGGTAATTTTACAATCGAA
Found at i:79096308 original size:53 final size:52
Alignment explanation
Indices: 79096263--79096365 Score: 129
Period size: 53 Copynumber: 2.0 Consensus size: 52
79096253 GTAATTCTGT
* *
79096263 AAATCG-GGGTACTTTGGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTA-TTTAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* *
79096316 AAATCGAGGGTATTTAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTATTTAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
79096366 TAGTAAACTA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
52 8 0.18
53 31 0.70
54 5 0.11
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (52 bp):
AAATCGAGGGTATTTAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:79099483 original size:24 final size:24
Alignment explanation
Indices: 79099424--79099590 Score: 225
Period size: 24 Copynumber: 7.0 Consensus size: 24
79099414 GCTTTATCAT
*
79099424 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
*
79099448 AGTAACTGGGGCAAAAGCCCTTTTG
1 A-TAACTGGGGCATAAGCCCTTTTG
* * *
79099473 ATCACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
79099496 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
79099520 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
79099543 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79099567 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79099591 CACTTCCTCC
Statistics
Matches: 127, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
23 42 0.33
24 73 0.57
25 12 0.09
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:79099519 original size:47 final size:47
Alignment explanation
Indices: 79099445--79099588 Score: 252
Period size: 47 Copynumber: 3.1 Consensus size: 47
79099435 CCTAGCCTCT
* * * *
79099445 TTTAGTAACTGGGGCAAAAGCCCTTTTGATCACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
79099492 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
79099539 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
79099586 TTT
1 TTT
79099589 TGCACTTCCT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC
Found at i:79099527 original size:71 final size:72
Alignment explanation
Indices: 79099424--79099590 Score: 225
Period size: 71 Copynumber: 2.3 Consensus size: 72
79099414 GCTTTATCAT
* * *
79099424 ATAACTGGAGGCCT-AGCCTCTTTT-AGTAACTGGGGCAAAAGCCCTTTTGATCACTAGGGCATA
1 ATAACTGG-GGCATAAGCC-CTTTTGAGTAACTGGGGCAAAAGCCC-TTTAATAACTAGGGCATA
79099487 AGCCC-TTTA
63 AGCCCTTTTA
* *
79099496 ATAACTGGGGCATAAGCCCTTTTGA-TAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
1 ATAACTGGGGCATAAGCCCTTTTGAGTAACTGGGGCAAAAGCCCTTTAATAACTAGGGCATAAGC
*
79099560 CCTTTTG
66 CCTTTTA
79099567 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79099591 CACTTCCTCC
Statistics
Matches: 86, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
70 20 0.23
71 53 0.62
72 13 0.15
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (72 bp):
ATAACTGGGGCATAAGCCCTTTTGAGTAACTGGGGCAAAAGCCCTTTAATAACTAGGGCATAAGC
CCTTTTA
Found at i:79099661 original size:9 final size:9
Alignment explanation
Indices: 79099647--79099703 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79099637 ATCTCATGTG
79099647 CATATCATA
1 CATATCATA
*
79099656 CATATCATGTG
1 CATATCA--TA
79099667 CATATCATA
1 CATATCATA
* *
79099676 CATGTCATGTG
1 CATATCA--TA
79099687 CATATCATA
1 CATATCATA
79099696 CATATCAT
1 CATATCAT
79099704 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:79099663 original size:20 final size:20
Alignment explanation
Indices: 79099635--79099705 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
79099625 GCATTTATGA
*
79099635 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79099655 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
79099675 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79099695 ACATATCATGT
1 ACATATCATGT
79099706 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79099670 original size:11 final size:11
Alignment explanation
Indices: 79099640--79099694 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79099630 TATGAACATC
79099640 TCATGTGCATA
1 TCATGTGCATA
*
79099651 TCA--TACATA
1 TCATGTGCATA
79099660 TCATGTGCATA
1 TCATGTGCATA
* *
79099671 TCA--TACATG
1 TCATGTGCATA
79099680 TCATGTGCATA
1 TCATGTGCATA
79099691 TCAT
1 TCAT
79099695 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79099770 original size:25 final size:25
Alignment explanation
Indices: 79099742--79099789 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79099732 ATGTATAAAC
* * *
79099742 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
79099767 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
79099790 CATATTACAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:79100704 original size:27 final size:27
Alignment explanation
Indices: 79100674--79100738 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
79100664 GGGCATATTC
79100674 GTCATTTTACCATACAAGGG-TATTACG
1 GTCATTTTACCATACAAGGGCT-TTACG
* * *
79100701 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAAGGGCTTTACG
*
79100728 GTCTTTTTACC
1 GTCATTTTACC
79100739 TTTTAGGGGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAAGGGCTTTACG
Found at i:79100822 original size:27 final size:27
Alignment explanation
Indices: 79100792--79101021 Score: 129
Period size: 27 Copynumber: 8.4 Consensus size: 27
79100782 GTAAATCAAC
* *
79100792 AAACCAAAGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
79100819 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTTC-AGTAA-TTTTAT
* * * *
79100847 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* * * * *
79100875 AAATCAGGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
79100902 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
79100929 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * * *
79100956 AAACTAGGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *** * *
79100983 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
*
79101010 AAATCAAGGGTA
1 AAACCAAGGGTA
79101022 AAATAGTAAT
Statistics
Matches: 165, Mismatches: 34, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
27 137 0.83
28 14 0.08
29 14 0.08
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:79100994 original size:54 final size:54
Alignment explanation
Indices: 79100772--79100992 Score: 178
Period size: 54 Copynumber: 4.0 Consensus size: 54
79100762 CATCCTACAA
* * ** * * * * *
79100772 GGGTGTTTTGGTAAATCAACAAACCAAAGGTATTTCAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCAG
* * * * *
79100826 TGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTCT-GTAACTTTGTAAATCAG
1 GGGTATTT-TGGTAA-TTTTACAAACT-AAGGGTATTT-TAGTAATTTTGTAAATCAG
* * * * **
79100882 GGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAA-CTAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATC-AG
*
79100936 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTAGTAATTTTGTAAATCGAG
1 GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATC-AG
79100991 GG
1 GG
79100993 TAAAACAGTA
Statistics
Matches: 127, Mismatches: 32, Indels: 15
0.73 0.18 0.09
Matches are distributed among these distances:
53 2 0.02
54 74 0.58
55 18 0.14
56 33 0.26
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTAGTAATTTTGTAAATCAG
Found at i:79101022 original size:27 final size:27
Alignment explanation
Indices: 79100972--79101183 Score: 252
Period size: 27 Copynumber: 7.9 Consensus size: 27
79100962 GGGGTATTTT
*
79100972 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
79100999 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
79101026 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
79101053 GGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
79101080 -GATAATTCTGTAAGTCGAGGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
*
79101107 -GATAATTATGTAAATC-AGGGGTAAAAC
1 AG-TAATTCTGTAAATCGA-GGGTAAAAC
* * *
79101134 GGTAATTATGTAAAT-TAGGGGTAAAAC
1 AGTAATTCTGTAAATCGA-GGGTAAAAC
* *
79101161 GGTAATTCTGTAAATCGGGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
79101184 CTTTGGTAAT
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
26 2 0.01
27 163 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:79101210 original size:27 final size:26
Alignment explanation
Indices: 79101180--79101278 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
79101170 GTAAATCGGG
*
79101180 GGTACTTTGGTAATTTTACAAGTCGAA
1 GGTA-TTTGGTAATTTTACAAATCGAA
* *
79101207 GGTATTTCGGTAAATTTACAAATCGAG
1 GGTATTT-GGTAATTTTACAAATCGAA
* * *
79101234 GGTATTTTAGTATTTTTACAAA-CTAA
1 GGTA-TTTGGTAATTTTACAAATCGAA
79101260 GGGTATTTCGGTAATTTTA
1 -GGTATTT-GGTAATTTTA
79101279 GTAAACTAAA
Statistics
Matches: 58, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
26 8 0.14
27 47 0.81
28 3 0.05
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.40
Consensus pattern (26 bp):
GGTATTTGGTAATTTTACAAATCGAA
Found at i:79101218 original size:54 final size:53
Alignment explanation
Indices: 79101172--79101276 Score: 131
Period size: 54 Copynumber: 2.0 Consensus size: 53
79101162 GTAATTCTGT
* * *
79101172 AAATCGGGGGTACTTTGGTAATTTTACAAGTCGAA-GGTATTTCGGTAAATTTAC
1 AAATCGAGGGTACTTTAGTAATTTTACAA-ACGAAGGGTATTTCGGT-AATTTAC
* * *
79101226 AAATCGAGGGTATTTTAGTATTTTTACAAACTAAGGGTATTTCGGTAATTT
1 AAATCGAGGGTACTTTAGTAATTTTACAAACGAAGGGTATTTCGGTAATTT
79101277 TAGTAAACTA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
53 8 0.18
54 36 0.82
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (53 bp):
AAATCGAGGGTACTTTAGTAATTTTACAAACGAAGGGTATTTCGGTAATTTAC
Found at i:79102641 original size:31 final size:31
Alignment explanation
Indices: 79102606--79102664 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
79102596 TAAATTAATC
*
79102606 TACTAATCAGTTTTGAATGACCTTTGATAGA
1 TACTAATCAATTTTGAATGACCTTTGATAGA
79102637 TACTAATCAATTTTGAATGACCTTTGAT
1 TACTAATCAATTTTGAATGACCTTTGAT
79102665 GGGTATTCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.41
Consensus pattern (31 bp):
TACTAATCAATTTTGAATGACCTTTGATAGA
Found at i:79102906 original size:16 final size:17
Alignment explanation
Indices: 79102878--79102938 Score: 106
Period size: 17 Copynumber: 3.6 Consensus size: 17
79102868 AATTTGGCCG
*
79102878 TGTGGGCCCCACGGACG
1 TGTGGGCCCCACGGACA
79102895 TGTGGG-CCCACGGACA
1 TGTGGGCCCCACGGACA
79102911 TGTGGGCCCCACGGACA
1 TGTGGGCCCCACGGACA
79102928 TGTGGGCCCCA
1 TGTGGGCCCCA
79102939 TATGGACGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
16 15 0.36
17 27 0.64
ACGTcount: A:0.15, C:0.34, G:0.38, T:0.13
Consensus pattern (17 bp):
TGTGGGCCCCACGGACA
Found at i:79111980 original size:517 final size:517
Alignment explanation
Indices: 79111027--79111989 Score: 1500
Period size: 517 Copynumber: 1.9 Consensus size: 517
79111017 CCATATTGTT
* ** *
79111027 AGTTTTAGTAGAATGGTTTAGGTGATCACTTTCAATTTCCATTGTGTTGCCAGAATTACGAGCTT
1 AGTTTTAATAGAATGGTTTAGACGATCACCTTCAATTTCCATTGTGTTGCCAGAATTACGAGCTT
* * * ** *
79111092 GAAGGGTGATTGTTTTGTCTCCCACATGGAGTGTGAGTTCACCTGTGCCAACATCAATAATTGTT
66 GAAGGGTGAGTGTTTTATCTCCCACATGAAGCATGAGCTCACCTGTGCCAACATCAATAATTGTT
* *
79111157 TTAGCAGTTGTTAAAAAGGGCCTTCCTAGAATTAAAGGAGTGTTGCTATCCTCCTCTATGTCTAG
131 TTAACAGTTGCTAAAAAGGGCCTTCCTAGAATTAAAGGAGTGTTGCTATCCTCCTCTATGTCTAG
*
79111222 AACAATGAAGTCAATGGGAAATATAAATTTATCGATTTTAACTAGCACATCTTCAATAATACCCC
196 AACAATGAAGTCAACGGGAAATATAAATTTATCGATTTTAACTAGCACATCTTCAATAATACCCC
* *
79111287 TAGGAAATCTTATAGTTTTATCTGCTAATTGAATATTCATCCTAGTCTGTTTGGGTTTCCCGAGA
261 TAGGAAATCTTATAGTTTTATCTGCTAATTGAATACTCATCCTAGTCTATTTGGGTTTCCCGAGA
** * *
79111352 CCTAATTGTTTGAACATTTTGTAAGGCATGACGTTAATACTAGCCCCCAAGTCAGCTAATGCATT
326 CCTAATTACTTAAACATTTTGTAAGGCATGACGTTAATACTAGCCCCCAAGTCAGCTAATGCATG
* *
79111417 ATTAACATCTAAACTACCAATTAAGCAAGGAATTGTAAAACTCCCTAGATCTTTTACGATTGTTT
391 ATTAACATCTAAACTACCAATTAAGCAACGAATAGTAAAACTCCCTAGATCTTTTACGATTGTTT
79111482 GAGAGTGGCTCATGCACTTCCTTCAGCCTTATCTCCTGCAAAGTGGGTTGTATCATGTGGTC
456 GAGAGTGGCTCATGCACTTCCTTCAGCCTTATCTCCTGCAAAGTGGGTTGTATCATGTGGTC
* * * *
79111544 AGTTTTAATAGAATGGTTTAGACGATCACCTTCAACTTTCGA-TGTGTTGTCGGAATTGCGAGCT
1 AGTTTTAATAGAATGGTTTAGACGATCACCTTCAA-TTTCCATTGTGTTGCCAGAATTACGAGCT
* *
79111608 TGAAGGGTGAGTGTTTTATCTCCTACGTGAAGCATGAGCTCACCTGTGCCAACATCAATAATTGT
65 TGAAGGGTGAGTGTTTTATCTCCCACATGAAGCATGAGCTCACCTGTGCCAACATCAATAATTGT
* * * *
79111673 TTTAACAGTTGCTAGAAAGGGCCTTCCTAGAATTAAGGGAGTGTTGCTATTCTCTTCTATGTCTA
130 TTTAACAGTTGCTAAAAAGGGCCTTCCTAGAATTAAAGGAGTGTTGCTATCCTCCTCTATGTCTA
* *
79111738 GAACAATTAAGTCAACGGGAAATATAAATTTATCGATTTTAACTAGCACATCTTCAATAATACCT
195 GAACAATGAAGTCAACGGGAAATATAAATTTATCGATTTTAACTAGCACATCTTCAATAATACCC
* * *
79111803 CTAGGGAATCTTATAGTTTTATCTGCTAATTGAATGCTCATCCTAGTCTATTTGGGTTTCCCGAT
260 CTAGGAAATCTTATAGTTTTATCTGCTAATTGAATACTCATCCTAGTCTATTTGGGTTTCCCGAG
* * * *
79111868 ACCTAGTTACTTAAACATTTTGTAAGGCATGACGTTGATACTAG-CCTCTAGATCAGC-ACATGC
325 ACCTAATTACTTAAACATTTTGTAAGGCATGACGTTAATACTAGCCCCCAAG-TCAGCTA-ATGC
* *
79111931 ATGATTAACATCTAAACTACCAATTAAGCAACGAATAGTAAAGCTCCCTAGGTCTTTTA
388 ATGATTAACATCTAAACTACCAATTAAGCAACGAATAGTAAAACTCCCTAGATCTTTTA
79111990 GTTTGTTGGG
Statistics
Matches: 401, Mismatches: 42, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
516 6 0.01
517 390 0.97
518 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (517 bp):
AGTTTTAATAGAATGGTTTAGACGATCACCTTCAATTTCCATTGTGTTGCCAGAATTACGAGCTT
GAAGGGTGAGTGTTTTATCTCCCACATGAAGCATGAGCTCACCTGTGCCAACATCAATAATTGTT
TTAACAGTTGCTAAAAAGGGCCTTCCTAGAATTAAAGGAGTGTTGCTATCCTCCTCTATGTCTAG
AACAATGAAGTCAACGGGAAATATAAATTTATCGATTTTAACTAGCACATCTTCAATAATACCCC
TAGGAAATCTTATAGTTTTATCTGCTAATTGAATACTCATCCTAGTCTATTTGGGTTTCCCGAGA
CCTAATTACTTAAACATTTTGTAAGGCATGACGTTAATACTAGCCCCCAAGTCAGCTAATGCATG
ATTAACATCTAAACTACCAATTAAGCAACGAATAGTAAAACTCCCTAGATCTTTTACGATTGTTT
GAGAGTGGCTCATGCACTTCCTTCAGCCTTATCTCCTGCAAAGTGGGTTGTATCATGTGGTC
Found at i:79116339 original size:50 final size:50
Alignment explanation
Indices: 79116215--79116456 Score: 267
Period size: 50 Copynumber: 4.8 Consensus size: 50
79116205 AGCTAAAGCT
* * * *
79116215 ATCTGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACC-AACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
79116264 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* * * *
79116314 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * *
79116365 AT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACA-TTCGACTTAA-C
1 ATCTGA-TACACGTAGTAGCCTGCACTTAGTACTACACACGT-GACCTAACC
* * *
79116414 AGTATGGTACACGTAGTAGCCTACACTTAGTACTACACACGTG
1 A-TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
79116457 TATGTATTCA
Statistics
Matches: 162, Mismatches: 24, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
49 43 0.27
50 80 0.49
51 39 0.24
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (50 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:79116425 original size:101 final size:99
Alignment explanation
Indices: 79116218--79116456 Score: 279
Period size: 101 Copynumber: 2.4 Consensus size: 99
79116208 TAAAGCTATC
* * * *
79116218 TGATACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCTGGTACACGTAGTAGC
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTGGTACACATAGTAGC
* *
79116283 CTGCACTTAGTACTACACACGTGACCTCACCATC
66 CTGCACTTAGTACTACACACGTGACCTCAACATA
* * *
79116317 TGATACACGTAGTAGCCTGCACTTAGTACTACATACGTGATCGAAGTC-AT-TGAGTACGCATAG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA--CAATCTG-GTACACATAG
* *
79116380 TAGCCTGCACTTAGTACTACACA-TTCGA-CTTAACAGTA
62 TAGCCTGCACTTAGTACTACACACGT-GACCTCAACA-TA
* *
79116418 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTG
1 TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
79116457 TATGTATTCA
Statistics
Matches: 120, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
99 36 0.30
100 11 0.09
101 72 0.60
102 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
TGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCTGGTACACATAGTAGC
CTGCACTTAGTACTACACACGTGACCTCAACATA
Found at i:79123793 original size:51 final size:50
Alignment explanation
Indices: 79123677--79123858 Score: 194
Period size: 51 Copynumber: 3.6 Consensus size: 50
79123667 ATCTGATACG
* *
79123677 CATAGTAGCCTGTACTTAGTACTACACATGTGA-CCAA--CAATTCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTC-ATT-GGTACA
* * * *
79123726 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTCATTGAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTCATTG-GTACA
* * *
79123777 CATAGTAGCCTGCACTTCGTACTACACATGCGACTTAATAGT-A-TGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGA-TCAA-AGTCATTGGTACA
*
79123827 CGTAGTAGCCTGCACTTAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
79123859 TATTCATAAT
Statistics
Matches: 112, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
49 30 0.27
50 37 0.33
51 38 0.34
52 4 0.04
53 3 0.03
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGTCATTGGTACA
Found at i:79123853 original size:101 final size:100
Alignment explanation
Indices: 79123673--79123854 Score: 285
Period size: 101 Copynumber: 1.8 Consensus size: 100
79123663 AGCTATCTGA
* *
79123673 TACGCATAGTAGCCTGTACTTAGTACTACACATGTGACCAACAATTCGGTACACGTAGTAGCCTG
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATTCGGTACACGTAGTAGCCTG
79123738 CACTTAGTACTACACACGTGATCGAAGTCATTGAG
66 CACTTAGTACTACACACGTGATCGAAGTCATTGAG
* * * *
79123773 TACGCATAGTAGCCTGCACTTCGTACTACACATGCGACTTAATAGTAT-GGTACACGTAGTAGCC
1 TACGCATAGTAGCCTGCACTTAGTACTACACATGCGAC-CAACAAT-TCGGTACACGTAGTAGCC
79123837 TGCACTTAGTACTACACA
64 TGCACTTAGTACTACACA
79123855 TGTGTATTCA
Statistics
Matches: 74, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 35 0.47
101 38 0.51
102 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (100 bp):
TACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATTCGGTACACGTAGTAGCCTG
CACTTAGTACTACACACGTGATCGAAGTCATTGAG
Found at i:79131435 original size:5 final size:5
Alignment explanation
Indices: 79131425--79131509 Score: 76
Period size: 5 Copynumber: 17.8 Consensus size: 5
79131415 TATGTCTTTC
* *
79131425 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAT CAAA- AAAA- AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
79131473 AAAAT AAAAT AAAAAT AAAAT -AAAT -AAAT -AAAT AAAA
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
79131510 ATAGGAGGAT
Statistics
Matches: 69, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
3 3 0.04
4 19 0.28
5 34 0.49
6 13 0.19
ACGTcount: A:0.78, C:0.01, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:79131464 original size:11 final size:10
Alignment explanation
Indices: 79131425--79131509 Score: 76
Period size: 8 Copynumber: 8.9 Consensus size: 10
79131415 TATGTCTTTC
79131425 AAAATAAAAT
1 AAAATAAAAT
79131435 --AATAAAATT
1 AAAATAAAA-T
*
79131444 GAAATGAAAAT
1 AAAAT-AAAAT
*
79131455 AAAATCAAA-
1 AAAATAAAAT
79131464 AAAA-AAAAT
1 AAAATAAAAT
79131473 AAAATAAAAT
1 AAAATAAAAT
79131483 AAAAATAAAAT
1 -AAAATAAAAT
79131494 -AAAT-AAAT
1 AAAATAAAAT
79131502 -AAATAAAA
1 AAAATAAAA
79131510 ATAGGAGGAT
Statistics
Matches: 64, Mismatches: 3, Indels: 17
0.76 0.04 0.20
Matches are distributed among these distances:
8 18 0.28
9 16 0.25
10 8 0.12
11 18 0.28
12 4 0.06
ACGTcount: A:0.78, C:0.01, G:0.02, T:0.19
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:79131482 original size:28 final size:28
Alignment explanation
Indices: 79131426--79131509 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 28
79131416 ATGTCTTTCA
*
79131426 AAATAAAATAATAAAATTGAAATGAAAAT-A
1 AAATAAAATAA-AAAAAT-AAAT-AAAATAA
79131456 AAATCAAAA-AAAAAAATAAAATAAAATAA
1 AAAT-AAAATAAAAAAAT-AAATAAAATAA
*
79131485 AAATAAAATAAATAAATAAATAAAA
1 AAATAAAATAAAAAAATAAATAAAA
79131510 ATAGGAGGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 17 0.35
29 21 0.44
30 6 0.12
31 4 0.08
ACGTcount: A:0.77, C:0.01, G:0.02, T:0.19
Consensus pattern (28 bp):
AAATAAAATAAAAAAATAAATAAAATAA
Found at i:79131491 original size:34 final size:35
Alignment explanation
Indices: 79131423--79131509 Score: 106
Period size: 34 Copynumber: 2.5 Consensus size: 35
79131413 GATATGTCTT
* * *
79131423 TCAAAATAAAATAATAAAATTGAAATGAAAATAAAA
1 TCAAAA-AAAAAAATAAAATTAAAATAAAAATAAAA
79131459 TCAAAAAAAAAAATAAAA-TAAAATAAAAATAAAA
1 TCAAAAAAAAAAATAAAATTAAAATAAAAATAAAA
* *
79131493 T-AAATAAATAAATAAAA
1 TCAAAAAAAAAAATAAAA
79131510 ATAGGAGGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 14 0.30
34 15 0.33
35 11 0.24
36 6 0.13
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (35 bp):
TCAAAAAAAAAAATAAAATTAAAATAAAAATAAAA
Found at i:79131511 original size:23 final size:24
Alignment explanation
Indices: 79131445--79131512 Score: 88
Period size: 23 Copynumber: 2.9 Consensus size: 24
79131435 AATAAAATTG
*
79131445 AAATGAAAATAAAATCAAAA-AAAA
1 AAAT-AAAATAAAATAAAAATAAAA
79131469 AAATAAAATAAAATAAAAATAAAA
1 AAATAAAATAAAATAAAAATAAAA
79131493 TAAAT-AAAT-AAATAAAAATA
1 -AAATAAAATAAAATAAAAATA
79131513 GGAGGATTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
23 25 0.61
24 12 0.29
25 4 0.10
ACGTcount: A:0.79, C:0.01, G:0.01, T:0.18
Consensus pattern (24 bp):
AAATAAAATAAAATAAAAATAAAA
Found at i:79136795 original size:13 final size:13
Alignment explanation
Indices: 79136777--79136804 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
79136767 GAACCAAAAG
79136777 TACTAGTAATAAC
1 TACTAGTAATAAC
79136790 TACTAGTAATAAC
1 TACTAGTAATAAC
79136803 TA
1 TA
79136805 TCTTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.07, T:0.32
Consensus pattern (13 bp):
TACTAGTAATAAC
Found at i:79143713 original size:39 final size:39
Alignment explanation
Indices: 79143659--79143774 Score: 214
Period size: 39 Copynumber: 3.0 Consensus size: 39
79143649 CAAGACACTG
*
79143659 GAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
79143698 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
*
79143737 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGCT
1 GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCT
79143775 GGTAACATAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 75 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.23
Consensus pattern (39 bp):
GAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTA
Found at i:79149096 original size:13 final size:13
Alignment explanation
Indices: 79149078--79149104 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79149068 GAAATAATCG
79149078 CACACGGGCGTGT
1 CACACGGGCGTGT
79149091 CACACGGGCGTGT
1 CACACGGGCGTGT
79149104 C
1 C
79149105 TCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:79155544 original size:40 final size:40
Alignment explanation
Indices: 79155436--79155645 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79155426 CGGGATTTAA
* * * * *
79155436 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79155476 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79155516 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79155556 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79155596 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79155636 CCGGATATAT
1 CCGGATATAT
79155646 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79163679 original size:40 final size:40
Alignment explanation
Indices: 79163571--79163780 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79163561 CGGGATTTAA
* * * * *
79163571 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79163611 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79163651 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79163691 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79163731 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79163771 CCGGATATAT
1 CCGGATATAT
79163781 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79166990 original size:40 final size:40
Alignment explanation
Indices: 79166882--79167091 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79166872 CGGGATTTAA
* * * * *
79166882 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79166922 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79166962 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79167002 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79167042 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79167082 CCGGATATAT
1 CCGGATATAT
79167092 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79175127 original size:40 final size:40
Alignment explanation
Indices: 79175019--79175228 Score: 305
Period size: 40 Copynumber: 5.2 Consensus size: 40
79175009 CGGGATTTAA
* * * * *
79175019 CCGGATATAGCGACTCGCACGATTGCCTTCGGGTCATAAC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
* * * * * *
79175059 CCGGATTTGGT-GACTTGCACAAAGGCCTTCGGGTCTTAGC
1 CCGGATAT-ATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79175099 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79175139 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79175179 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
79175219 CCGGATATAT
1 CCGGATATAT
79175229 TTCCAATGTT
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATATCAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:79191337 original size:30 final size:30
Alignment explanation
Indices: 79191303--79191360 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
79191293 ATGGGGTAGA
79191303 TCGTGTGTCACACACGGTCTAGACATACGC
1 TCGTGTGTCACACACGGTCTAGACATACGC
*
79191333 TCGTGTGTCACACATGGTCTAGACATAC
1 TCGTGTGTCACACACGGTCTAGACATAC
79191361 TCCCTTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (30 bp):
TCGTGTGTCACACACGGTCTAGACATACGC
Found at i:79192232 original size:47 final size:46
Alignment explanation
Indices: 79192168--79192293 Score: 132
Period size: 47 Copynumber: 2.7 Consensus size: 46
79192158 AACTCTTAGT
* *
79192168 CGATGCATGT-CTCAGACATGTTTTACACTAGCACTCAT-CTCAAT-GC
1 CGATGCATGTCCT-AGACATGTCTTACACTAGCACTCATAAT--ATGGC
* *
79192214 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATATGGC
1 CGATG-CATGTCCTAGACAT-GTCTTACACTAGCACTCATAATATGGC
* *
79192262 CGATGCATGTCCCAGACATGTCTAACACTAGC
1 CGATGCATGTCCTAGACATGTCTTACACTAGC
79192294 TCACATAAGT
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
46 16 0.24
47 26 0.38
48 25 0.37
49 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCTAGACATGTCTTACACTAGCACTCATAATATGGC
Found at i:79192238 original size:92 final size:95
Alignment explanation
Indices: 79192072--79192245 Score: 230
Period size: 92 Copynumber: 1.9 Consensus size: 95
79192062 GGGAAAGTGC
* *
79192072 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCACCTATCTATGTCGATGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCA-CTATCAATGCCGATGCCATGTCCCA
*
79192137 GCCAAGGTCTTACACTGACACAACTCTTAGT
65 GACAAGGTCTTACACTGACACAACTCTTAGT
* * * *
79192168 CGATG-CATGTCTCAGACAT-GTTTTACACTAGCA-CTCA-TCTCAATGCCGATGCCATGTCCTA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAG-ATCTCACTATCAATGCCGATGCCATGTCCCA
*
79192229 GACATGGTCTTACACTG
65 GACAAGGTCTTACACTG
79192246 GCTCTCATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
92 35 0.51
94 15 0.22
95 14 0.20
96 5 0.07
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGATCTCACTATCAATGCCGATGCCATGTCCCAG
ACAAGGTCTTACACTGACACAACTCTTAGT
Found at i:79192816 original size:30 final size:30
Alignment explanation
Indices: 79192781--79192837 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
79192771 CTTCTCACTA
79192781 TTTCACACATTTATCAACTATTTTACAGCT
1 TTTCACACATTTATCAACTATTTTACAGCT
79192811 TTTCACACATTTATCAACTATTTTACA
1 TTTCACACATTTATCAACTATTTTACA
79192838 ACTTATGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.02, T:0.44
Consensus pattern (30 bp):
TTTCACACATTTATCAACTATTTTACAGCT
Found at i:79193696 original size:46 final size:45
Alignment explanation
Indices: 79193567--79193696 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 45
79193557 ACGTCTCGAA
*
79193567 GCCGATGCATGTCCCAGACATGTCTTACACTAGCGCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCA-CTCAAT
*
79193613 GCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-T-AATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCACTCAA--T
*
79193660 GGCCGATGCATGTCCTAGACATGTCTTACACTAGCTC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
79193697 ACACAAGTGA
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
45 2 0.03
46 22 0.29
47 28 0.37
48 23 0.31
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCACTCAAT
Found at i:79199072 original size:16 final size:15
Alignment explanation
Indices: 79199032--79199076 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
79199022 CACTAGGAAC
*
79199032 TATGTGATTATGAGT
1 TATGTGATTATGTGT
*
79199047 TCATGAGATTATGTGT
1 T-ATGTGATTATGTGT
79199063 ATATGTGATTATGT
1 -TATGTGATTATGT
79199077 AAATCCGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.27, C:0.02, G:0.24, T:0.47
Consensus pattern (15 bp):
TATGTGATTATGTGT
Found at i:79203085 original size:20 final size:21
Alignment explanation
Indices: 79203042--79203085 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
79203032 TAAATTTCAA
*
79203042 TATATGTGATTAATAGAAAGT
1 TATATGTGATTAAAAGAAAGT
79203063 TATAT-TGATTAAAAGTAAA-T
1 TATATGTGATTAAAAG-AAAGT
79203083 TAT
1 TAT
79203086 GAATCGATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
TATATGTGATTAAAAGAAAGT
Found at i:79203519 original size:56 final size:56
Alignment explanation
Indices: 79203383--79203589 Score: 285
Period size: 56 Copynumber: 3.7 Consensus size: 56
79203373 GAAGAATATG
79203383 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACG-TTAATACGT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
* * *
79203438 TGGCATCGATATGTGATT-TCAATATATGTGTGCGAGTAAGTCCATGTTTAAAACGT
1 TGGCATCGATATGTGATTCT-GATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
** * *
79203494 TAACATCGATACGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
1 TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
* * *
79203550 TGGCATC-AGTATGTGATTCTGATATGTGTTTACGAGTAAG
1 TGGCATCGA-TATGTGATTCTGATATATGTGTGCGAGTAAG
79203590 ACCCTATCTG
Statistics
Matches: 132, Mismatches: 16, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
54 1 0.01
55 43 0.33
56 87 0.66
57 1 0.01
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTAATACGT
Found at i:79203615 original size:112 final size:110
Alignment explanation
Indices: 79203382--79203622 Score: 288
Period size: 112 Copynumber: 2.2 Consensus size: 110
79203372 AGAAGAATAT
79203382 GTGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTAATACGTTGGCATCGA
1 GTGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTAATACGTTGGCATCGA
* * * *
79203447 TATGTGATTTCAATATATGTGTGCGAGTAAGTCCATGTTTAAAAC
66 TATGTGATTTCAATATATGTGTACGAGTAAGACCATATCTAAAAC
** * *
79203492 GTTAACATCGATACGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTTCATACGTTGGCATC
1 G-TGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACG-TTAATACGTTGGCATC
* * * * ***
79203557 -AGTATGTGA-TTCTGATATGTGTTTACGAGTAAGACCCTATCTGGGAC
64 GA-TATGTGATTTC-AATATATGTGTACGAGTAAGACCATATCTAAAAC
79203604 AGTGGCATCGATATGTGAT
1 -GTGGCATCGATATGTGAT
79203623 GTAACACCCC
Statistics
Matches: 108, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
110 1 0.01
111 47 0.44
112 59 0.55
113 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (110 bp):
GTGGCATCGATATGTGATTCTGATATATGTGTGCGAGTAAGTCCACGTTAATACGTTGGCATCGA
TATGTGATTTCAATATATGTGTACGAGTAAGACCATATCTAAAAC
Found at i:79204369 original size:38 final size:38
Alignment explanation
Indices: 79204327--79204433 Score: 196
Period size: 38 Copynumber: 2.8 Consensus size: 38
79204317 CTCAGCGTAT
*
79204327 ACTGGGCTGAAGCCTTTTCATATTTCATATTTCATAAC
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAC
79204365 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAC
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAC
*
79204403 ACTAGGCCGAAGCCTTTTCATATTTCATATT
1 ACTGGGCCGAAGCCTTTTCATATTTCATATT
79204434 ACTGGGCCGA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 67 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.38
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAC
Found at i:79204387 original size:31 final size:31
Alignment explanation
Indices: 79204349--79204450 Score: 114
Period size: 31 Copynumber: 3.1 Consensus size: 31
79204339 CCTTTTCATA
79204349 TTTCATATTTCATAACACTGGGCCGAAGCCTTTTCAT
1 TTTCATATTTCATAACACTGGGCCGAAG-C----C-T
*
79204386 ATTTCATATTTCATAACACTAGGCCGAAGCCT
1 -TTTCATATTTCATAACACTGGGCCGAAGCCT
**
79204418 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
79204449 TT
1 TT
79204451 ACTGTAAACG
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
31 30 0.50
32 1 0.02
33 1 0.02
37 1 0.02
38 27 0.45
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:79204701 original size:26 final size:26
Alignment explanation
Indices: 79204671--79204739 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
79204661 CTCTTTTAAT
* *
79204671 AACTGGGGCATAAGTCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
79204697 AACTGGGGCATAAGCCCTTTTCAGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
79204723 AACTGGGGCATAAGCCC
1 AACTGGGGCATAAGCCC
79204740 GTTTGCACTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:79204818 original size:20 final size:20
Alignment explanation
Indices: 79204793--79204869 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
79204783 TTATGAATAC
79204793 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79204813 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
*
79204833 ATAATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
79204853 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
79204870 ATAATATTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79204824 original size:11 final size:11
Alignment explanation
Indices: 79204793--79204868 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
79204783 TTATGAATAC
79204793 ATCATGTGCAT
1 ATCATGTGCAT
*
79204804 ATCA--TACAT
1 ATCATGTGCAT
79204813 ATCATGTGCAT
1 ATCATGTGCAT
*
79204824 ATC--GTACAT
1 ATCATGTGCAT
*
79204833 ATAATGTGCAT
1 ATCATGTGCAT
*
79204844 ATCA--TACAT
1 ATCATGTGCAT
79204853 ATCATGTGCAT
1 ATCATGTGCAT
79204864 ATCAT
1 ATCAT
79204869 AATAATATTG
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79212529 original size:38 final size:38
Alignment explanation
Indices: 79212487--79212595 Score: 182
Period size: 38 Copynumber: 2.9 Consensus size: 38
79212477 CTCAGCGTAT
* *
79212487 ACTGGCCCGAAGCCTTTTCATATTTCATATTTCGTAAC
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAC
*
79212525 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAG
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAC
*
79212563 ACTGGGTCGAAGCCTTTTCATATTTCATATTTC
1 ACTGGGCCGAAGCCTTTTCATATTTCATATTTC
79212596 TGGGTCGAAG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 67 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.39
Consensus pattern (38 bp):
ACTGGGCCGAAGCCTTTTCATATTTCATATTTCATAAC
Found at i:79212585 original size:31 final size:31
Alignment explanation
Indices: 79212547--79212610 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79212537 CCTTTTCATA
79212547 TTTCATATTTCATAAGACTGGGTCGAAGCCT
1 TTTCATATTTCATAAGACTGGGTCGAAGCCT
***
79212578 TTTCATATTTCATATTTCTGGGTCGAAGCCT
1 TTTCATATTTCATAAGACTGGGTCGAAGCCT
79212609 TT
1 TT
79212611 ATTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (31 bp):
TTTCATATTTCATAAGACTGGGTCGAAGCCT
Found at i:79212953 original size:20 final size:20
Alignment explanation
Indices: 79212928--79213004 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
79212918 TTATGAATAC
79212928 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
79212948 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
*
79212968 ATCATGTGTATATCATACAT
1 ATCATGTGCATATCATACAT
79212988 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
79213005 ATAATATTGT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79212959 original size:11 final size:11
Alignment explanation
Indices: 79212928--79213003 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
79212918 TTATGAATAC
79212928 ATCATGTGCAT
1 ATCATGTGCAT
*
79212939 ATCA--TACAT
1 ATCATGTGCAT
79212948 ATCATGTGCAT
1 ATCATGTGCAT
*
79212959 ATC--GTACAT
1 ATCATGTGCAT
*
79212968 ATCATGTGTAT
1 ATCATGTGCAT
*
79212979 ATCA--TACAT
1 ATCATGTGCAT
79212988 ATCATGTGCAT
1 ATCATGTGCAT
79212999 ATCAT
1 ATCAT
79213004 AATAATATTG
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79222110 original size:23 final size:23
Alignment explanation
Indices: 79222084--79222202 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
79222074 CCTTGCCTCT
*
79222084 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
79222107 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
79222130 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
79222154 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
79222177 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
79222200 TTT
1 TTT
79222203 TGCACTTCCT
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
23 70 0.76
24 22 0.24
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:79222152 original size:47 final size:47
Alignment explanation
Indices: 79222082--79222202 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
79222072 GGCCTTGCCT
*
79222082 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
79222129 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
79222176 C-TTTAATAACTGGGGCATAAGCCCTTT
1 CTTTTAATAACTGGGGCATAAGCCCTTT
79222203 TGCACTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 25 0.35
47 46 0.65
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (47 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:79222275 original size:9 final size:9
Alignment explanation
Indices: 79222261--79222337 Score: 64
Period size: 9 Copynumber: 7.9 Consensus size: 9
79222251 ATCTCATGTG
79222261 CATATCATA
1 CATATCATA
*
79222270 CATATCATGTG
1 CATATCA--TA
79222281 CATATCATA
1 CATATCATA
* *
79222290 CATGTCATGTG
1 CATATCA--TA
79222301 CATATCATA
1 CATATCATA
*
79222310 CATATCATGTG
1 CATATCA--TA
79222321 CATATCATA
1 CATATCATA
79222330 CATATCAT
1 CATATCAT
79222338 GTTTATCAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
9 31 0.57
11 23 0.43
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:79222277 original size:20 final size:20
Alignment explanation
Indices: 79222249--79222339 Score: 164
Period size: 20 Copynumber: 4.5 Consensus size: 20
79222239 GCATTTATGA
*
79222249 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79222269 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
79222289 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79222309 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79222329 ACATATCATGT
1 ACATATCATGT
79222340 TTATCAAAAT
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 68 1.00
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79222284 original size:11 final size:11
Alignment explanation
Indices: 79222254--79222328 Score: 72
Period size: 11 Copynumber: 7.4 Consensus size: 11
79222244 TATGAACATC
79222254 TCATGTGCATA
1 TCATGTGCATA
*
79222265 TCA--TACATA
1 TCATGTGCATA
79222274 TCATGTGCATA
1 TCATGTGCATA
* *
79222285 TCA--TACATG
1 TCATGTGCATA
79222294 TCATGTGCATA
1 TCATGTGCATA
*
79222305 TCA--TACATA
1 TCATGTGCATA
79222314 TCATGTGCATA
1 TCATGTGCATA
79222325 TCAT
1 TCAT
79222329 ACATATCATG
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 23 0.46
11 27 0.54
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79230452 original size:23 final size:23
Alignment explanation
Indices: 79230422--79230610 Score: 315
Period size: 23 Copynumber: 8.1 Consensus size: 23
79230412 CCTTGCCTCT
*
79230422 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
79230445 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
79230468 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
79230492 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
79230515 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
79230539 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
* *
79230562 TTTAATAACTGGGACATAAACCC
1 TTTAATAACTGGGGCATAAGCCC
79230585 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
79230608 TTT
1 TTT
79230611 TGCACTTCCT
Statistics
Matches: 155, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
23 111 0.72
24 44 0.28
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:79230477 original size:47 final size:47
Alignment explanation
Indices: 79230420--79230612 Score: 318
Period size: 47 Copynumber: 4.1 Consensus size: 47
79230410 GGCCTTGCCT
*
79230420 CTTTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
*
79230467 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
*
79230514 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
* *
79230561 C-TTTAATAACTGGGACATAAA-CCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCA-AAAGCCCTTTAATAACTGGGGCATAAGCC
79230607 CTTTTG
1 CTTTTG
79230613 CACTTCCTCC
Statistics
Matches: 138, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
46 40 0.29
47 98 0.71
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:79230499 original size:70 final size:70
Alignment explanation
Indices: 79230422--79230612 Score: 314
Period size: 70 Copynumber: 2.7 Consensus size: 70
79230412 CCTTGCCTCT
79230422 TTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
1 TTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
79230487 AGCCC
66 AGCCC
* * *
79230492 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCAT
1 TTTAATAACTGGGGCAAAAGCCC-TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAT
79230556 AAGCCC
65 AAGCCC
*
79230562 TTTAATAACTGGGACATAAA-CCCTTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCA-AAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTG
79230613 CACTTCCTCC
Statistics
Matches: 111, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
69 22 0.20
70 65 0.59
71 24 0.22
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (70 bp):
TTTAATAACTGGGGCAAAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATA
AGCCC
Found at i:79230685 original size:20 final size:20
Alignment explanation
Indices: 79230657--79230707 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
79230647 GCATTTATGA
*
79230657 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79230677 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79230697 ACATATCATGT
1 ACATATCATGT
79230708 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.22, G:0.10, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79233201 original size:9 final size:9
Alignment explanation
Indices: 79233184--79233213 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
79233174 ATTTACCATC
79233184 ATTTCCATGT
1 ATTT-CATGT
79233194 ATTTCATGT
1 ATTTCATGT
79233203 ATTTCATGT
1 ATTTCATGT
79233212 AT
1 AT
79233214 ATACCTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.80
10 4 0.20
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.53
Consensus pattern (9 bp):
ATTTCATGT
Found at i:79233431 original size:25 final size:25
Alignment explanation
Indices: 79233401--79233506 Score: 81
Period size: 25 Copynumber: 4.2 Consensus size: 25
79233391 TATAAATAAA
79233401 AAGCTCCTCCGAGCTGAATAACGGT
1 AAGCTCCTCCGAGCTGAATAACGGT
*
79233426 AAGCTCCTCTC-AGCTGAATAACGAT
1 AAGCTCCTC-CGAGCTGAATAACGGT
* * ** * *
79233451 GA-CCCCATGTGAGCTGAATCACAGT
1 AAGCTCC-TCCGAGCTGAATAACGGT
* * * *
79233476 AAACTCTTCCGATCTGAATAACTGT
1 AAGCTCCTCCGAGCTGAATAACGGT
79233501 AAGCTC
1 AAGCTC
79233507 ATATGATCTG
Statistics
Matches: 60, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
24 3 0.05
25 54 0.90
26 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (25 bp):
AAGCTCCTCCGAGCTGAATAACGGT
Found at i:79233906 original size:15 final size:17
Alignment explanation
Indices: 79233881--79233914 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
79233871 GATAAGGACT
79233881 AAATTAGAAAG-TGATA
1 AAATTAGAAAGATGATA
79233897 AAATTA-AAAGATGATA
1 AAATTAGAAAGATGATA
79233913 AA
1 AA
79233915 TAATTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.24
Consensus pattern (17 bp):
AAATTAGAAAGATGATA
Found at i:79235085 original size:57 final size:58
Alignment explanation
Indices: 79234947--79235088 Score: 153
Period size: 57 Copynumber: 2.5 Consensus size: 58
79234937 CTCATTACAG
* * * **
79234947 AAAGGATTTAGCCTGGACTGGTAATCCAGATATAAGTCCTCTCGAGCATATGTTATTG
1 AAAGGATTTAGCCTGGACTGGTAATCCAGATACAAGTCCTCTAGAGCATATGTCATAA
** * * * *
79235005 ATTGGATTTAGCCCGGACGGGTAATCCAGAT-CAAG-CTTTTTAGAGCATATGTCATAA
1 AAAGGATTTAGCCTGGACTGGTAATCCAGATACAAGTC-CTCTAGAGCATATGTCATAA
*
79235062 AAAGGATTTAGCCTAGACTGGTAATCC
1 AAAGGATTTAGCCTGGACTGGTAATCC
79235089 TATTTTATAC
Statistics
Matches: 67, Mismatches: 16, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
56 1 0.01
57 39 0.58
58 27 0.40
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (58 bp):
AAAGGATTTAGCCTGGACTGGTAATCCAGATACAAGTCCTCTAGAGCATATGTCATAA
Found at i:79238419 original size:157 final size:158
Alignment explanation
Indices: 79238132--79238447 Score: 519
Period size: 157 Copynumber: 2.0 Consensus size: 158
79238122 CACGACCGTG
* * * *
79238132 TGTCTACTTGTGTGGACAAAATAAAGGCTATTTATCGAGCCATTTGTCACCCTCTTTTACCCTTG
1 TGTCTACTCGTGTGGACAAAATAAAGGCTATTTACCAAGCCATTTGTCACCCTCTTTTACCCTTA
* * * *
79238197 TATACACACAAATTCAATGCAATAATCCATGACATGTTTTAGGAACGAAAACATCCATAAACAAG
66 CATACACACAAATTCAATGCAATAATCCATAACATGTTTAAGCAACGAAAACATCCATAAACAAG
79238262 GCTAAATCATATCATTCATTACCAACAC
131 GCTAAATCATATCATTCATTACCAACAC
*
79238290 TGTCTGCTCGTGTGGACAAAATAAAGGCTA-TTACCAAGCCATTTGTCACCCTCTTTTACACC-T
1 TGTCTACTCGTGTGGACAAAATAAAGGCTATTTACCAAGCCATTTGTCACCCTCTTTTAC-CCTT
*
79238353 ACATACGCACAAATTCAATGCAATAATCCATAACATGTTTAAGCAACGAAAACATCCATAAACAA
65 ACATACACACAAATTCAATGCAATAATCCATAACATGTTTAAGCAACGAAAACATCCATAAACAA
79238418 GGCTAAATCATATCATTCATTACCAACAC
130 GGCTAAATCATATCATTCATTACCAACAC
79238447 T
1 T
79238448 TAACATATTT
Statistics
Matches: 147, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
157 117 0.80
158 30 0.20
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.28
Consensus pattern (158 bp):
TGTCTACTCGTGTGGACAAAATAAAGGCTATTTACCAAGCCATTTGTCACCCTCTTTTACCCTTA
CATACACACAAATTCAATGCAATAATCCATAACATGTTTAAGCAACGAAAACATCCATAAACAAG
GCTAAATCATATCATTCATTACCAACAC
Found at i:79245605 original size:25 final size:24
Alignment explanation
Indices: 79245572--79245663 Score: 94
Period size: 25 Copynumber: 3.7 Consensus size: 24
79245562 GTTATAAACA
79245572 GTAAGCTCTTCTGAGCTGAATAACG
1 GTAAGCTCTTC-GAGCTGAATAACG
*
79245597 GTAAGCTCTTCCAAGCTGAATAACG
1 GTAAGCTCTT-CGAGCTGAATAACG
* * **
79245622 GTAAGGTCGTGCGAGCTGAATAATT
1 GTAAGCTC-TTCGAGCTGAATAACG
*
79245647 GTAAGCTCATACGAGCT
1 GTAAGCTC-TTCGAGCT
79245664 AAAATCGATA
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
25 54 0.96
26 2 0.04
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (24 bp):
GTAAGCTCTTCGAGCTGAATAACG
Found at i:79246549 original size:23 final size:23
Alignment explanation
Indices: 79246510--79246554 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
79246500 TGAAGAAGAA
*
79246510 AACCTTTGTTTTATTATTTTATT
1 AACCTTTATTTTATTATTTTATT
79246533 AACCTTTATTTCT-TTATTTTAT
1 AACCTTTATTT-TATTATTTTAT
79246555 CTTTTTCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.64
Consensus pattern (23 bp):
AACCTTTATTTTATTATTTTATT
Found at i:79250344 original size:47 final size:47
Alignment explanation
Indices: 79250278--79250403 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
79250268 GATGTGTGCT
* ** *
79250278 AGTGTAAGACATGTTTGGGACATGCATCGGCCA-CATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCATCAAGACGAGAGCC
* * *
79250324 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CATTAAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCATCAAGACGAGAGCC
*
79250372 AGTGTAAGACATGTCTGGGATATGCATCGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC
79250404 TCGAGATATG
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
46 15 0.22
47 29 0.43
48 23 0.34
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCATCAAGACGAGAGCC
Found at i:79250420 original size:48 final size:46
Alignment explanation
Indices: 79250275--79250585 Score: 175
Period size: 49 Copynumber: 6.6 Consensus size: 46
79250265 ATGGATGTGT
* * *
79250275 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGA
* * * * * *
79250321 GCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTAAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAATATGAGA
*
79250369 GCTAGTGTAAGACATGTCTGGGATATGCATCGGCCTCGAGATATGCA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-A-ATATG-AGA
* * * * ** ** * *
79250417 GCTAGTGTAAGACCTATTTGGGACACGACATC-ATCTTGACATGTG-
1 GCTAGTGTAAGACATGTCTGGGACATG-CATCGGCCTCAATATGAGA
* * * * *
79250462 TC-AGTGTAAGACTTGTCTGGGACATGGCATTGACAC-CGATAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTC-A-ATATGAGA
* * * * *
79250510 GCCAGTGTAAGACTTGTCTGGGACATGGCATCAGCCTCGATATGTGAAA
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTC-A-ATATGAGA
*
79250559 GGC-AGTGTAAGACCTGTCTGGGACATG
1 -GCTAGTGTAAGACATGTCTGGGACATG
79250586 ACATTGACTT
Statistics
Matches: 203, Mismatches: 46, Indels: 30
0.73 0.16 0.11
Matches are distributed among these distances:
44 22 0.11
45 3 0.01
46 24 0.12
47 32 0.16
48 55 0.27
49 65 0.32
50 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAATATGAGA
Found at i:79250541 original size:142 final size:140
Alignment explanation
Indices: 79250323--79250589 Score: 335
Period size: 142 Copynumber: 1.9 Consensus size: 140
79250313 TTATGAGAGC
* *
79250323 CAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTAAGACGAGAGCTAGTGTAAGACATGTCT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCACCATTAAGACGAGAGCCAGTGTAAGACATGTCT
* * * *
79250388 GGGATATGCATCGGCCTCGAGATATGCAA-GCTAGTGTAAGACCTATTTGGGACACGACATCATC
66 GGGACATGCATCAGCCTCGAGATATGAAAGGC-AGTGTAAGACCTATCTGGGACACGACATCATC
79250452 TTGACATGTGT
130 TTGACATGTGT
* * *
79250463 CAGTGTAAGA-CTTGTCTGGGACATGGCATTGACACCGA-T-AGATGAGAGCCAGTGTAAGACTT
1 CAGTGTAAGACCATGTCTGGGACATGGCA-T--CACC-ATTAAGACGAGAGCCAGTGTAAGACAT
* * * *
79250525 GTCTGGGACATGGCATCAGCCTCGATATGTGAAAGGCAGTGTAAGACCTGTCTGGGACATGACAT
62 GTCTGGGACAT-GCATCAGCCTCGAGATATGAAAGGCAGTGTAAGACCTATCTGGGACACGACAT
79250590 TGACTTAGAT
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
139 17 0.16
140 11 0.10
141 30 0.28
142 47 0.44
143 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (140 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCACCATTAAGACGAGAGCCAGTGTAAGACATGTCT
GGGACATGCATCAGCCTCGAGATATGAAAGGCAGTGTAAGACCTATCTGGGACACGACATCATCT
TGACATGTGT
Found at i:79255480 original size:27 final size:27
Alignment explanation
Indices: 79255450--79255635 Score: 189
Period size: 27 Copynumber: 6.9 Consensus size: 27
79255440 TTAATTTACC
*
79255450 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
**
79255477 AAATTACCAAAATACCCCT-AGTTTACA
1 AAATTACCAAAATACCCCTGA-TTTGTA
* *
79255504 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
79255531 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** **
79255558 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*** *
79255585 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
79255612 AAATTACCAAAGTACCCCTGATTT
1 AAATTACCAAAATACCCCTGATTT
79255636 ACAGAATTAC
Statistics
Matches: 133, Mismatches: 22, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 4 0.03
27 125 0.94
28 4 0.03
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:79255588 original size:81 final size:80
Alignment explanation
Indices: 79255450--79255635 Score: 214
Period size: 81 Copynumber: 2.3 Consensus size: 80
79255440 TTAATTTACC
* * * *
79255450 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTACAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGACTGTA-AAAATTATCAAA
**
79255515 ATACCC-CTGGTTTGTA
65 ATACCCTC-GACTTGTA
* ** **
79255531 AAATTACCAAAATACCCCTGATTTGTGAAATTACTGAAATACCCTCGACCTGT-AAAATTATTGA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-CGA-CTGTAAAAATTATCAA
79255595 AATACCCTCGACTTGTA
64 AATACCCTCGACTTGTA
*
79255612 AAATTACCAAAGTACCCCTGATTT
1 AAATTACCAAAATACCCCTGATTT
79255636 ACAGAATTAC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
81 85 0.94
82 3 0.03
83 2 0.02
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.30
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCGACTGTAAAAATTATCAAAA
TACCCTCGACTTGTA
Found at i:79255701 original size:27 final size:27
Alignment explanation
Indices: 79255674--79256363 Score: 769
Period size: 27 Copynumber: 26.0 Consensus size: 27
79255664 CAAAATGATT
**
79255674 GAAATACCCCTGTAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79255701 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79255728 GAAATACCCCTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79255755 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79255782 GAAATACCCCTATAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
79255809 GAAATACCCCTTTAAGTTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79255836 TAAATACCCCTATAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79255863 GAAATATCCCTGTGGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79255890 GAAATACCCC--T---GTA-AAGTA--
1 GAAATACCCCTGTAGGGTAGAATTACC
* **
79255909 GAATTACCCCTGTAAAGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79255936 AAAATACCCCTGTAGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79255963 GAAATACCCCTGTAGGGTAGAATTAAC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79255990 -AGAATACCCCTGTAGGGTAGAATCACC
1 GA-AATACCCCTGTAGGGTAGAATTACC
* *
79256017 GGAATACCCCTGTAGGGTAGAATCACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79256044 GGAATACCTCTGTA-GGTAGAATCACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
79256070 AAAATACCCCTGTAGGGTAGAATCACC
1 GAAATACCCCTGTAGGGTAGAATTACC
79256097 GAAATA-CCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79256123 GAAATACCCCTATAGGGTAGAATCATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79256150 GAAATACCCTTGTAGGGTAGAATTTCT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
79256177 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
79256204 GGAAA-A-CCCTGTAGGGTAGAATTACC
1 -GAAATACCCCTGTAGGGTAGAATTACC
* **
79256230 GAAATACCCCTATAGGGTAGAATTATT
1 GAAATACCCCTGTAGGGTAGAATTACC
79256257 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79256284 AAAATACTCCTGTAGGGTAGAATTACA
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
79256311 AAAATACCCCTATAGGGTGGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
79256338 GAGATA-CCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
79256364 ATTTTGCCCC
Statistics
Matches: 566, Mismatches: 82, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
19 9 0.02
21 5 0.01
22 3 0.01
24 3 0.01
25 9 0.02
26 84 0.15
27 449 0.79
28 4 0.01
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:79255918 original size:19 final size:19
Alignment explanation
Indices: 79255894--79255935 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
79255884 ATTACTGAAA
79255894 TACCCCTGTAAAGTAGAAT
1 TACCCCTGTAAAGTAGAAT
79255913 TACCCCTGTAAAGTAGAAT
1 TACCCCTGTAAAGTAGAAT
79255932 TACC
1 TACC
79255936 AAAATACCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (19 bp):
TACCCCTGTAAAGTAGAAT
Found at i:79255960 original size:73 final size:73
Alignment explanation
Indices: 79255840--79255987 Score: 215
Period size: 73 Copynumber: 2.0 Consensus size: 73
79255830 ATTACTTAAA
* * * * * *
79255840 TACCCCTATAAGGTAGAATTACCGAAATATCCCTGTGGGGTAGAATTACTGAAATACCCCTGTAA
1 TACCCCTATAAAGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAA
79255905 AGTAGAAT
66 AGTAGAAT
* *
79255913 TACCCCTGTAAAGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAG
1 TACCCCTATAAAGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAA
*
79255978 GGTAGAAT
66 AGTAGAAT
79255986 TA
1 TA
79255988 ACAGAATACC
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 66 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25
Consensus pattern (73 bp):
TACCCCTATAAAGTAGAATTACCAAAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAA
AGTAGAAT
Found at i:79256842 original size:22 final size:22
Alignment explanation
Indices: 79256790--79256854 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
79256780 TTAAAGCCTT
* *
79256790 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
* *
79256812 CT-ACATATGGCTCTGTACCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
79256834 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
79256855 ACGTATTTGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:79257043 original size:27 final size:27
Alignment explanation
Indices: 79257013--79257096 Score: 73
Period size: 27 Copynumber: 3.1 Consensus size: 27
79257003 ATTCTGTTAA
* * *
79257013 GTGGCTTTACCAC-ATTATCTATTTCTG
1 GTGGCTATACCACAAATATCT-GTTCTG
*
79257040 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTATACCACAAATATCTGTTCTG
* * *
79257067 GTGGCTCTGCCA-TAATATCTGTATCTG
1 GTGGCTATACCACAAATATCTGT-TCTG
79257094 GTG
1 GTG
79257097 ACTCTGTCAC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 9 0.18
27 34 0.69
28 6 0.12
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
GTGGCTATACCACAAATATCTGTTCTG
Found at i:79257101 original size:27 final size:26
Alignment explanation
Indices: 79257035--79257114 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
79257025 CATTATCTAT
*
79257035 TTCTGGTGGCTATGCCACAAATATCTG
1 TTCTGGTGGCTCTGCCA-AAATATCTG
*
79257062 TTCTGGTGGCTCTGCCATAATATCTG
1 TTCTGGTGGCTCTGCCAAAATATCTG
* * *
79257088 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCAAAATATCTG
79257115 ATAACTGAGC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 9 0.19
27 38 0.81
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCAAAATATCTG
Found at i:79257286 original size:6 final size:6
Alignment explanation
Indices: 79257262--79257367 Score: 74
Period size: 6 Copynumber: 17.2 Consensus size: 6
79257252 TTTTGATTTT
* * *
79257262 TGATTC TG-TTAC TTGATAC TGATAC TGATTC TGATTT TGATTC TG-TTACC
1 TGATTC TGATT-C -TGATTC TGATTC TGATTC TGATTC TGATTC TGATT--C
* * * *
79257312 TGGTAC TGATTC TGATTC TGATTC TG-TCACC TAATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC
79257361 TGATTC T
1 TGATTC T
79257368 AGTTCTGACA
Statistics
Matches: 80, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
5 5 0.06
6 64 0.80
7 8 0.10
8 3 0.04
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.47
Consensus pattern (6 bp):
TGATTC
Found at i:79257297 original size:31 final size:31
Alignment explanation
Indices: 79257280--79257367 Score: 131
Period size: 31 Copynumber: 2.8 Consensus size: 31
79257270 TTACTTGATA
*
79257280 CTGATACTGATTCTGATTTTGATTCTGTTAC
1 CTGATACTGATTCTGATTCTGATTCTGTTAC
* *
79257311 CTGGTACTGATTCTGATTCTGATTCTGTCAC
1 CTGATACTGATTCTGATTCTGATTCTGTTAC
* *
79257342 CTAATTCTGATTCTGATTCTGATTCT
1 CTGATACTGATTCTGATTCTGATTCT
79257368 AGTTCTGACA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 51 1.00
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (31 bp):
CTGATACTGATTCTGATTCTGATTCTGTTAC
Found at i:79257306 original size:37 final size:37
Alignment explanation
Indices: 79257259--79257334 Score: 125
Period size: 37 Copynumber: 2.1 Consensus size: 37
79257249 ACATTTTGAT
*
79257259 TTTTGATTCTGTTACTTGATACTGATACTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATACTGATTCTGA
* *
79257296 TTTTGATTCTGTTACCTGGTACTGATTCTGATTCTGA
1 TTTTGATTCTGTTACCTGATACTGATACTGATTCTGA
79257333 TT
1 TT
79257335 CTGTCACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.18, C:0.14, G:0.17, T:0.50
Consensus pattern (37 bp):
TTTTGATTCTGTTACCTGATACTGATACTGATTCTGA
Found at i:79258054 original size:25 final size:25
Alignment explanation
Indices: 79258019--79258068 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
79258009 AAGTGTTACA
*
79258019 GTTGGCGTAAAA-AGAATATGAATGT
1 GTTGGCATAAAACA-AATATGAATGT
79258044 GTTGGCATAAAACAAATATGAATGT
1 GTTGGCATAAAACAAATATGAATGT
79258069 CAGTTTTTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 22 0.96
26 1 0.04
ACGTcount: A:0.42, C:0.06, G:0.24, T:0.28
Consensus pattern (25 bp):
GTTGGCATAAAACAAATATGAATGT
Found at i:79262171 original size:47 final size:46
Alignment explanation
Indices: 79262112--79262230 Score: 157
Period size: 47 Copynumber: 2.5 Consensus size: 46
79262102 GTGTGCTAGT
** *
79262112 GTAAGACATGTCTGGGACATGCATCAGCAACATTATGAGAGCCAGC
1 GTAAGACATGTCTGGGACATGCATCAGCAACAAGATAAGAGCCAGC
** * *
79262158 GTAAGACCATGTCTGGGACATGGCATCAGCATTAAGATAAGAGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATCAGCAACAAGATAAGAGCCAGC
79262206 GTAAGACATGTCTGGGACATGCATC
1 GTAAGACATGTCTGGGACATGCATC
79262231 GGCCTCGAGA
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
46 11 0.17
47 28 0.44
48 25 0.39
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATCAGCAACAAGATAAGAGCCAGC
Found at i:79262359 original size:49 final size:49
Alignment explanation
Indices: 79262106--79262469 Score: 230
Period size: 49 Copynumber: 7.7 Consensus size: 49
79262096 ATGGATGTGT
*
79262106 GCTAGTGTAAGACATGTCTGGGACAT-GCATC-AGCAAC--AT-TATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGA-C-ACTGATATATGAGA
* * * * *
79262152 GCCAGCGTAAGACCATGTCTGGGACATGGCATC-AGCA-TTA-AGATAAGA
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATCGA-CACTGATATATGAGA
* * *
79262200 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCGAGATATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATATATG-AGA
* * * * * * *
79262248 GCTAGTGTAAAACCTATCTGGGACACGGCATCGGC-TTG--ACATGTG-
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATATATGAGA
* *
79262293 TC-AGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATATATGAGA
* * * *
79262341 TCTAGTGTAAGACCTGTCTGGGAAATGGCATCGGC-CTTGATATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACAC-TGATATATGAGA
* * *
79262390 G-TCAGTGTAAGACCTGTCTGGGACATGACATTGACA-TAGATGTAT--GA
1 GCT-AGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATATATGAGA
* * * *
79262437 GCCAATGTAAGACCATGTTTGGAACATGGCATC
1 GCTAGTGTAAGACC-TGTCTGGGACATGGCATC
79262470 AGCATCGTAC
Statistics
Matches: 251, Mismatches: 44, Indels: 44
0.74 0.13 0.13
Matches are distributed among these distances:
44 28 0.11
45 3 0.01
46 22 0.09
47 43 0.17
48 71 0.28
49 84 0.33
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (49 bp):
GCTAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATATATGAGA
Found at i:79262372 original size:142 final size:140
Alignment explanation
Indices: 79262158--79262414 Score: 358
Period size: 142 Copynumber: 1.8 Consensus size: 140
79262148 GAGAGCCAGC
*
79262158 GTAAGACCATGTCTGGGACATGGCATCAGCATTAAGATAAGAGCTAGTGTAAGACATGTCTGGGA
1 GTAAGACCATGTCTGGGACATGGCATCAGCATGAAGATAAGAGCTAGTGTAAGACATGTCTGGGA
* *
79262223 CATGCATCGGCCTCGAGATATGCAAG-CTAGTGTAAAACCTATCTGGGACACGGCATCGGCTTGA
66 AATGCATCGGCCTCGAGATATGAAAGTC-AGTGTAAAACCTATCTGGGACACGGCATCGGCTTGA
79262287 CATGTGTCAGT
130 CATGTGTCAGT
* * *
79262298 GTAAGACC-TGTCTGGGACATGGCATC-GACACTGATAGATGAGATCTAGTGTAAGACCTGTCTG
1 GTAAGACCATGTCTGGGACATGGCATCAG-CA-TGA-AGATAAGAGCTAGTGTAAGACATGTCTG
* * * *
79262361 GGAAATGGCATCGGCCTTGATATATGAAAGTCAGTGTAAGACCTGTCTGGGACA
63 GGAAAT-GCATCGGCCTCGAGATATGAAAGTCAGTGTAAAACCTATCTGGGACA
79262415 TGACATTGAC
Statistics
Matches: 102, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.20
140 10 0.10
141 30 0.29
142 40 0.39
143 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (140 bp):
GTAAGACCATGTCTGGGACATGGCATCAGCATGAAGATAAGAGCTAGTGTAAGACATGTCTGGGA
AATGCATCGGCCTCGAGATATGAAAGTCAGTGTAAAACCTATCTGGGACACGGCATCGGCTTGAC
ATGTGTCAGT
Found at i:79264213 original size:20 final size:21
Alignment explanation
Indices: 79264185--79264223 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
79264175 GTGTCATGGA
*
79264185 AAAATTTTCTAA-GTTTTCCC
1 AAAACTTTCTAAGGTTTTCCC
79264205 AAAACTTTCTAAGGTTTTC
1 AAAACTTTCTAAGGTTTTC
79264224 GGCTTAGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (21 bp):
AAAACTTTCTAAGGTTTTCCC
Found at i:79265292 original size:30 final size:30
Alignment explanation
Indices: 79265256--79265316 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
79265246 TTCCCGAGCC
79265256 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
79265286 TAGGGGCAAAATTTTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
79265316 T
1 T
79265317 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:79268103 original size:30 final size:30
Alignment explanation
Indices: 79268048--79268178 Score: 171
Period size: 30 Copynumber: 4.5 Consensus size: 30
79268038 ATAGTGAATC
*
79268048 CGCACACTTAGTGCTATAT-ATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
*
79268077 CGCACACTTAGTGCTATATAATTTTCAGCT
1 CGCACACTTAGTGCTATATAATTTTCAACT
79268107 CGCACACTTAGTGCTATATAA---TCAAACT
1 CGCACACTTAGTGCTATATAATTTTC-AACT
* * * *
79268135 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAATTTTCAACT
79268165 CGCACACTTAGTGC
1 CGCACACTTAGTGC
79268179 CAATCTTGTC
Statistics
Matches: 92, Mismatches: 5, Indels: 9
0.87 0.05 0.08
Matches are distributed among these distances:
27 2 0.02
28 22 0.24
29 19 0.21
30 48 0.52
31 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (30 bp):
CGCACACTTAGTGCTATATAATTTTCAACT
Found at i:79268158 original size:58 final size:58
Alignment explanation
Indices: 79268047--79268178 Score: 176
Period size: 58 Copynumber: 2.3 Consensus size: 58
79268037 TATAGTGAAT
* * * * *
79268047 CCGCACACTTAGTGCTATATATTTTCAGCTCGCACACTTAGTGCTATATAATTTTCAGC
1 CCGCACACTTAGTGCTATATA-TATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
* *
79268106 TCGCACACTTAGTGCTATATA-ATCAAACTCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATATATATC-AACTCGCACACTTAGTGCTATACAATTTTAAAC
79268164 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
79268179 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 2 0.03
58 42 0.66
59 20 0.31
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (58 bp):
CCGCACACTTAGTGCTATATATATCAACTCGCACACTTAGTGCTATACAATTTTAAAC
Found at i:79273370 original size:29 final size:29
Alignment explanation
Indices: 79273337--79273438 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
79273327 TGACGAGATC
79273337 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
79273366 GGCACTAAGTGTGCGTGCTGGAAATATAT
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
** * *
79273395 GGCACTAAGTGTGCAAGCTGGAAAAATAC
1 GGCACTAAGTGTGCGTGCTGGAAATATAT
**
79273424 GGCACTGGGTGTGCG
1 GGCACTAAGTGTGCG
79273439 AGCTCGAGGG
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (29 bp):
GGCACTAAGTGTGCGTGCTGGAAATATAT
Found at i:79281223 original size:29 final size:29
Alignment explanation
Indices: 79281189--79281266 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
79281179 GTGACGAGAT
* *
79281189 CGGCACTAAGTGTGCGTGCTGGAAATATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
* *
79281218 TGGCACTAAGTGTGCAAGCTGGAAAAATA
1 CGGCACTAAGTGTGCGAGCTGGAAAAATA
**
79281247 CGGCACTGGGTGTGCGAGCT
1 CGGCACTAAGTGTGCGAGCT
79281267 CGGAGGGTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGCACTAAGTGTGCGAGCTGGAAAAATA
Found at i:79283192 original size:30 final size:31
Alignment explanation
Indices: 79283116--79283198 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
79283106 TCAGTCTCGA
*
79283116 CATAT-ACTGGGTCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
79283146 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
79283177 CATATCACT-GGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
79283199 ACTGTAAGTG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 18 0.35
31 33 0.65
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:79284420 original size:27 final size:27
Alignment explanation
Indices: 79284390--79284475 Score: 102
Period size: 27 Copynumber: 3.1 Consensus size: 27
79284380 GTAAATCTAC
*
79284390 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
79284417 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
79284443 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
79284473 AAA
1 AAA
79284476 TTAGAGTATT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 23 0.46
28 6 0.12
29 19 0.38
30 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:79284519 original size:27 final size:26
Alignment explanation
Indices: 79284452--79284575 Score: 122
Period size: 27 Copynumber: 4.7 Consensus size: 26
79284442 TAGAAAGTCA
* **
79284452 AGGGTATTTCTGTAATTTTGTAAATT
1 AGGGTATTTCGGTAATTTTACAAATT
* *
79284478 AGAGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGGTAATTTTACAAATT
* * **
79284504 GAGGGTATTTCAGTAATTTCACAAACC
1 -AGGGTATTTCGGTAATTTTACAAATT
* *
79284531 AGTGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTCGGTAATTTTACAAATT
79284558 AGGGGTATTTCGGTAATT
1 A-GGGTATTTCGGTAATT
79284576 CTACCCTATA
Statistics
Matches: 79, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
26 23 0.29
27 55 0.70
28 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.42
Consensus pattern (26 bp):
AGGGTATTTCGGTAATTTTACAAATT
Found at i:79284624 original size:26 final size:27
Alignment explanation
Indices: 79284595--79284671 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 27
79284585 AGCGGTATTT
*
79284595 CAGTAATT-T-CACAATCGAGGGTAAAA
1 CAGTAATTCTGCA-AATCAAGGGTAAAA
*
79284621 CAGTAATTCTGTAAATCAAGGGTAAAA
1 CAGTAATTCTGCAAATCAAGGGTAAAA
** *
79284648 CAGTAATTCTATAAATCGAGGGTA
1 CAGTAATTCTGCAAATCAAGGGTA
79284672 CTTTGGTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
26 8 0.18
27 36 0.80
28 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.26
Consensus pattern (27 bp):
CAGTAATTCTGCAAATCAAGGGTAAAA
Found at i:79284643 original size:27 final size:27
Alignment explanation
Indices: 79284607--79284671 Score: 112
Period size: 27 Copynumber: 2.4 Consensus size: 27
79284597 GTAATTTCAC
*
79284607 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
79284634 AATCAAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
79284661 AATCGAGGGTA
1 AATCGAGGGTA
79284672 CTTTGGTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.25
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:79288946 original size:46 final size:46
Alignment explanation
Indices: 79288803--79289021 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 46
79288793 GTAGAATGCT
* *
79288803 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCATC-CATCAAGTC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTC-TCTCATCAAGTC
* * * * *
79288850 GATGTCATGTCCCAGACATGTCTTACACTGGGT-TACATC-TCGAGGCC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCT-C-TCATC-AAGTC
**
79288897 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCTTTTCAACGTC
1 GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCTCATCAA-GTC
* *
79288943 GATGCCATGTCCCAGACGTGGTCTTACACTA--TCCCTCAT-AATGTGGC
1 GATGCCATGTCCCAGACAT-GTCTTACACTAGCTCTCTCATCAA-GT--C
79288990 TGATG-CATGTCCCAGACATGTCTTACACTAGC
1 -GATGCCATGTCCCAGACATGTCTTACACTAGC
79289022 ACACAAATAA
Statistics
Matches: 142, Mismatches: 16, Indels: 27
0.77 0.09 0.15
Matches are distributed among these distances:
44 1 0.01
45 7 0.05
46 66 0.46
47 53 0.37
48 15 0.11
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGTCTTACACTAGCTCTCTCATCAAGTC
Found at i:79293292 original size:27 final size:27
Alignment explanation
Indices: 79293262--79293364 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
79293252 ATTACCAAAG
* * *
79293262 TACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACAGTTT
*
79293289 TACCCTCGATTTATAGAATTACTA-TTT
1 TACCCTCGATTTACAGAATTAC-AGTTT
**
79293316 TACCCTTAATTTACAGAATTACAGTTT
1 TACCCTCGATTTACAGAATTACAGTTT
*
79293343 TACCCTCGATTTACATAATTAC
1 TACCCTCGATTTACAGAATTAC
79293365 TAAAATACCC
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 1 0.02
27 65 0.98
ACGTcount: A:0.30, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACAGTTT
Found at i:79293309 original size:54 final size:54
Alignment explanation
Indices: 79293235--79293375 Score: 147
Period size: 54 Copynumber: 2.6 Consensus size: 54
79293225 ATTATTGAAA
* * * * * * *
79293235 TACCCTCGACTTGTAAAATTACCAAAGTACCCCCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCCCAATTTACAGAATTACAGTTT
* *** **
79293289 TACCCTCGATTTATAGAATTACTATTTTACCCTTAATTTACAGAATTACAGTTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCCCAATTTACAGAATTACAGTTT
* *
79293343 TACCCTCGATTTACATAATTACTAAAATACCCC
1 TACCCTCGATTTATAAAATTACTAAAATACCCC
79293376 TTGTTTACAA
Statistics
Matches: 69, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCCCAATTTACAGAATTACAGTTT
Found at i:79293401 original size:54 final size:53
Alignment explanation
Indices: 79293343--79293619 Score: 200
Period size: 54 Copynumber: 5.1 Consensus size: 53
79293333 ATTACAGTTT
* * *
79293343 TACCCTCGATT-TACATAATTACTAAAATACCCCTTGTTTACAAAAGTACCAAAA
1 TACCCTCGATTGTA-A-AATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
* * * **
79293397 TACCCT-GGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGAT-TGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
* * * *** *
79293450 TACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TA-CCCTCGATTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
* ** *
79293504 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-TAGAAA
1 TACCCTCGA-TTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCA-AAA
* * ** ** * **
79293558 TACCCTTGACTTTCTAAAAATTATAAAAATACCATTGGTTTACAACATTACTGAAA
1 TACCCTCGA--TTGT-AAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
79293614 TACCCT
1 TACCCT
79293620 TGGTTTGTAG
Statistics
Matches: 180, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
53 41 0.23
54 94 0.52
55 8 0.04
56 36 0.20
57 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (53 bp):
TACCCTCGATTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAAA
Found at i:79293549 original size:81 final size:80
Alignment explanation
Indices: 79293359--79293551 Score: 244
Period size: 81 Copynumber: 2.4 Consensus size: 80
79293349 CGATTTACAT
* * * * *
79293359 AATTACTAAAATACCCCTTGTTTACAAAAGTACCAAAATACCCTGGTCTGTAAAATTGCTAAAAT
1 AATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAAT
**
79293424 ACCCCTGGTTTGTAA
66 ACCCCTAATTTGTAA
** * * *
79293439 AATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAA
1 AATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACC-CTGGTCTGTAAAATTACCAAAA
79293504 TA-CCCTCAATTTGTAA
65 TACCCCT-AATTTGTAA
*
79293520 AATTACCAAAATACCCCTAATTTACAAAATTA
1 AATTACCAAAATACCCCTAGTTTACAAAATTA
79293552 TAGAAATACC
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 41 0.43
81 55 0.57
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (80 bp):
AATTACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTGGTCTGTAAAATTACCAAAAT
ACCCCTAATTTGTAA
Found at i:79293551 original size:27 final size:27
Alignment explanation
Indices: 79293359--79293538 Score: 202
Period size: 27 Copynumber: 6.7 Consensus size: 27
79293349 CGATTTACAT
* * **
79293359 AATTACTAAAATACCCCTTGTTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
79293386 AAGTACCAAAATA-CCCTGGTCTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
79293412 AATTGCTAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
79293439 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * *
79293466 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
79293493 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
79293520 AATTACCAAAATACCCCTA
1 AATTACCAAAATACCCCTA
79293539 ATTTACAAAA
Statistics
Matches: 128, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 22 0.17
27 102 0.80
28 4 0.03
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:79295000 original size:9 final size:9
Alignment explanation
Indices: 79294988--79295044 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79294978 TTTGATAAAC
79294988 ATGATATGT
1 ATGATATGT
*
79294997 ATGATATGCAC
1 ATGATATG--T
*
79295008 ATGACATGT
1 ATGATATGT
*
79295017 ATGATATGCAC
1 ATGATATG--T
79295028 ATGATATGT
1 ATGATATGT
79295037 ATGATATG
1 ATGATATG
79295045 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79295011 original size:20 final size:20
Alignment explanation
Indices: 79294986--79295056 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
79294976 ATTTTGATAA
79294986 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79295006 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79295026 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79295046 ACATGAGATGT
1 ACATGATATGT
79295057 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79295033 original size:11 final size:11
Alignment explanation
Indices: 79294997--79295051 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79294987 CATGATATGT
79294997 ATGATATGCAC
1 ATGATATGCAC
* *
79295008 ATGACATG--T
1 ATGATATGCAC
79295017 ATGATATGCAC
1 ATGATATGCAC
*
79295028 ATGATATG--T
1 ATGATATGCAC
79295037 ATGATATGCAC
1 ATGATATGCAC
79295048 ATGA
1 ATGA
79295052 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79295231 original size:24 final size:24
Alignment explanation
Indices: 79295103--79295271 Score: 211
Period size: 25 Copynumber: 7.0 Consensus size: 24
79295093 AGGAAGTGCA
79295103 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
*
79295126 AAAGGGCTTATGCCCCAATTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
79295149 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
79295174 GAAGGGTTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
79295199 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
79295223 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
79295247 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
79295272 GATAAAGCAG
Statistics
Matches: 130, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
23 43 0.33
24 31 0.24
25 56 0.43
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:79295266 original size:49 final size:47
Alignment explanation
Indices: 79295102--79295271 Score: 202
Period size: 49 Copynumber: 3.5 Consensus size: 47
79295092 GAGGAAGTGC
* *
79295102 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAATTAT
1 AAAAGGGCTTATGCCCCAGTTATATAAAGGGCTTTTGCCCCAGTTAT
* *
79295148 TAAAGGGCTTATGCCCCAGTTATGATGAAGGG-TTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-ATAAAGGGCTTT-TGCCCCAGTTAT
*
79295196 GATAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTACT
1 -A-AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTTTGCCCCAGTTA-T
*
79295246 AAAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAAG-GGCTTATGCC-CCAGTTATAT
79295272 GATAAAGCAG
Statistics
Matches: 106, Mismatches: 9, Indels: 15
0.82 0.07 0.12
Matches are distributed among these distances:
46 22 0.21
47 2 0.02
48 26 0.25
49 30 0.28
50 26 0.25
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATATAAAGGGCTTTTGCCCCAGTTAT
Done.