Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 253 of 325
Found at i:79295499 original size:31 final size:31
Alignment explanation
Indices: 79295463--79295526 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79295453 CATTTATAGT
*
79295463 AAAGGCTTCGGCCTAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
79295494 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
79295525 AA
1 AA
79295527 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:79297210 original size:10 final size:10
Alignment explanation
Indices: 79297195--79297219 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
79297185 CATGGGCTTA
79297195 GGCCATTTTG
1 GGCCATTTTG
79297205 GGCCATTTTG
1 GGCCATTTTG
79297215 GGCCA
1 GGCCA
79297220 GACTAAGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.24, G:0.32, T:0.32
Consensus pattern (10 bp):
GGCCATTTTG
Found at i:79297523 original size:27 final size:27
Alignment explanation
Indices: 79297487--79297757 Score: 299
Period size: 27 Copynumber: 10.0 Consensus size: 27
79297477 CCCAATTGAT
* *
79297487 AAATGACTGTTTTGCCTTTGTGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
79297514 AAATGACTGTTTTGCCATTATATAGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * * * * *
79297541 AAATAATTATTTTTCCTTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * * *
79297568 AGATGACTATTTTACCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
79297595 AAATGATTGTTTTTCCCGTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
*
79297622 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* * *
79297649 AGATGACTATTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
79297676 ATATGATTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
*
79297703 AAATGATTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
* *
79297730 AAATGATTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGTGGTA
79297757 A
1 A
79297758 GAAAACTATT
Statistics
Matches: 211, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 211 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGTGGTA
Found at i:79297624 original size:81 final size:81
Alignment explanation
Indices: 79297489--79297757 Score: 349
Period size: 81 Copynumber: 3.3 Consensus size: 81
79297479 CAATTGATAA
* * * * * * * * *
79297489 ATGACTGTTTTGCCTTTGTGTGGTAAAATGACTGTTTTGCCATTATATAGTAAAATAATTATTTT
1 ATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGATTATTTT
* * *
79297554 TCCTTTATATGGTAAG
66 GCCCTTATGTGGTAAG
* * * *
79297570 ATGACTATTTTACCCTTATATGGTAAAATGATTGTTTTTCCCGTATGTGGTAAAATGACTATTTT
1 ATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGATTATTTT
79297635 GCCCTTATGTGGTAAG
66 GCCCTTATGTGGTAAG
* *
79297651 ATGACTATTTTGCCCTTATATGGTAATATGATTGTTTTGCCCTTATGTGGTAAAATGATTGTTTT
1 ATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGATTATTTT
*
79297716 GCCCTTATGTGGTAAA
66 GCCCTTATGTGGTAAG
* *
79297732 ATGATTGTTTTGCCCTTATATGGTAA
1 ATGACTATTTTGCCCTTATATGGTAA
79297758 GAAAACTATT
Statistics
Matches: 163, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 163 1.00
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (81 bp):
ATGACTATTTTGCCCTTATATGGTAAAATGATTGTTTTGCCCTTATGTGGTAAAATGATTATTTT
GCCCTTATGTGGTAAG
Found at i:79298100 original size:18 final size:18
Alignment explanation
Indices: 79298058--79298102 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
79298048 GACTTGTATT
79298058 TTGTTACTGCACAGATTA
1 TTGTTACTGCACAGATTA
* * * *
79298076 CTATTACTGCACTGTTTA
1 TTGTTACTGCACAGATTA
79298094 TTGTTACTG
1 TTGTTACTG
79298103 TATTGGGCCA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.44
Consensus pattern (18 bp):
TTGTTACTGCACAGATTA
Found at i:79300383 original size:15 final size:16
Alignment explanation
Indices: 79300363--79300394 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
79300353 AAATTAAATT
79300363 AATTAA-CTAAATGCA
1 AATTAACCTAAATGCA
79300378 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
79300394 A
1 A
79300395 TGAAATGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.53, C:0.16, G:0.06, T:0.25
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:79302098 original size:45 final size:45
Alignment explanation
Indices: 79302000--79302103 Score: 109
Period size: 45 Copynumber: 2.3 Consensus size: 45
79301990 AGACGTATCG
** **
79302000 CTTACTCATCTTTATGGTGATGTCAAAGCATCTTCCAACTATGTT
1 CTTACTCATCTTTATCATGATGTCAAAGCATCTTCCAACTATGGA
* * * * **
79302045 CTTGCTCATCTTTATCATGATGTCATAGCATTTTTCAGTTATGGA
1 CTTACTCATCTTTATCATGATGTCAAAGCATCTTCCAACTATGGA
*
79302090 CTTACTCATTTTTA
1 CTTACTCATCTTTA
79302104 GGCGTATAGC
Statistics
Matches: 47, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.44
Consensus pattern (45 bp):
CTTACTCATCTTTATCATGATGTCAAAGCATCTTCCAACTATGGA
Found at i:79306772 original size:34 final size:34
Alignment explanation
Indices: 79306732--79306800 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
79306722 CGAGTGAGTG
79306732 ATTATTTTATTATTTTAATGTTTACAGATATATT
1 ATTATTTTATTATTTTAATGTTTACAGATATATT
*
79306766 ATTATTTTATTATTTTAATGTTTACGGATATATT
1 ATTATTTTATTATTTTAATGTTTACAGATATATT
79306800 A
1 A
79306801 AGGTCATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (34 bp):
ATTATTTTATTATTTTAATGTTTACAGATATATT
Found at i:79306811 original size:34 final size:34
Alignment explanation
Indices: 79306739--79306811 Score: 92
Period size: 34 Copynumber: 2.1 Consensus size: 34
79306729 GTGATTATTT
** **
79306739 TATTATTTTAATGTTTACAGATATATTATTATTT
1 TATTATTTTAATGTTTACAGATATATTAAGATCA
* *
79306773 TATTATTTTAATGTTTACGGATATATTAAGGTCA
1 TATTATTTTAATGTTTACAGATATATTAAGATCA
79306807 TATTA
1 TATTA
79306812 AAATTTCGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.33, C:0.04, G:0.10, T:0.53
Consensus pattern (34 bp):
TATTATTTTAATGTTTACAGATATATTAAGATCA
Found at i:79309729 original size:29 final size:29
Alignment explanation
Indices: 79309705--79309798 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
79309695 TCGCACACCC
*
79309705 AGTGCCGTATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
79309734 AGTGCCATATATTTCCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
*
79309763 AGTGCCATATATTTTCAGCATGCACACTT
1 AGTGCCATATATTTCCAGCATGCACACTT
79309792 AGTGCCA
1 AGTGCCA
79309799 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.31
Consensus pattern (29 bp):
AGTGCCATATATTTCCAGCATGCACACTT
Found at i:79309730 original size:58 final size:58
Alignment explanation
Indices: 79309668--79309798 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 58
79309658 ATTTAAGCCC
* * * *
79309668 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATATATTTCCAGCAT
* * ** *
79309726 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTTCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
79309784 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
79309799 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
58 62 0.98
59 1 0.02
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:79314463 original size:13 final size:13
Alignment explanation
Indices: 79314445--79314477 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
79314435 CATCATTTGA
79314445 TTCATACTC-ACAT
1 TTCATA-TCAACAT
79314458 TTCATATCAACAT
1 TTCATATCAACAT
79314471 TTCATAT
1 TTCATAT
79314478 ACAAATCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 2 0.11
13 17 0.89
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (13 bp):
TTCATATCAACAT
Found at i:79314991 original size:43 final size:42
Alignment explanation
Indices: 79314941--79315041 Score: 107
Period size: 42 Copynumber: 2.4 Consensus size: 42
79314931 CATCCTAGAC
* *
79314941 GTGGTCTTACATGTAATCAAATATCAATGA-CACTGTCCCAGACA
1 GTGGTCTTACATGTAATCAAAT-GCAAT-ACCAATGTCCCAGA-A
* * * *
79314985 G-GGTCTTACACGAAATCAAGTGCAATACCAATGTCCCAGAT
1 GTGGTCTTACATGTAATCAAATGCAATACCAATGTCCCAGAA
79315026 GTGGTCTTACATGTAA
1 GTGGTCTTACATGTAA
79315042 ATCATAAGTC
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
41 2 0.04
42 27 0.57
43 17 0.36
44 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (42 bp):
GTGGTCTTACATGTAATCAAATGCAATACCAATGTCCCAGAA
Found at i:79315033 original size:42 final size:42
Alignment explanation
Indices: 79314986--79315085 Score: 112
Period size: 44 Copynumber: 2.3 Consensus size: 42
79314976 TCCCAGACAG
** *
79314986 GGTCTTACACGAAATC-AAGTGCAATACCAATGTCCCAGATGT
1 GGTCTTACACGAAATCAAAGT-CAATACCAACATCCCAAATGT
* **
79315028 GGTCTTACATGTAAATCATAAGTCAATGTCAACATCCCAAATGT
1 GGTCTTACACG-AAATCA-AAGTCAATACCAACATCCCAAATGT
79315072 GGTCTTACACGAAA
1 GGTCTTACACGAAA
79315086 ACACATATCA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
42 10 0.21
43 8 0.17
44 26 0.54
45 4 0.08
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAAGTCAATACCAACATCCCAAATGT
Found at i:79317896 original size:48 final size:48
Alignment explanation
Indices: 79317811--79318038 Score: 271
Period size: 48 Copynumber: 4.8 Consensus size: 48
79317801 ACCACGATTA
* * *
79317811 ATGAGAGCCAGTGCAAGACCATGTCTGGGACACGGCATCGGTGTTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGAT
* **
79317859 ATGATA-CCTAGTCTAAGACCATGTCTGGGACATGGCATCGACGTTGAT
1 ATGATAGCC-AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGAT
* *
79317907 ATGATAGCCAGTGTAAGACCATGTCTAGGACAAGGCATCGGTGTTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGAT
* * * **
79317955 ATGATAGCCAGTGTAAGATCATGTCTGAGACATGGCATTGGCATTGAT
1 ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGAT
* * * *
79318003 ATG-TGTGCCAGTGTAAGACCATATTTGGGATATGGC
1 ATGAT-AGCCAGTGTAAGACCATGTCTGGGACATGGC
79318039 GTCAGCCTCG
Statistics
Matches: 153, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
47 3 0.02
48 148 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
ATGATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGAT
Found at i:79318114 original size:42 final size:42
Alignment explanation
Indices: 79318013--79318254 Score: 153
Period size: 42 Copynumber: 5.5 Consensus size: 42
79318003 ATGTGTGCCA
* * *
79318013 GTGTAAGACCATATTTGGGATATGGCGTCAGCCTCGGTATGTGATTTC
1 GTGTAAGACCATATCTGGGATAT--CG-CA---TCGATATGAGATTTC
* * *
79318061 ATGTAAGACCATATCTGGGATATCGCATTGATATGAGATTTT
1 GTGTAAGACCATATCTGGGATATCGCATCGATATGAGATTTC
* * * * * * **
79318103 GTGTAAGACCATGTTTGGGACATGGCATCGATGTGAGGTCCC
1 GTGTAAGACCATATCTGGGATATCGCATCGATATGAGATTTC
* *
79318145 GTGTAAGACCATATCTGGGACATGGCATCAGCACTGACGTGAGATTTC
1 GTGTAAGACCATATCTGGGATATCGCATC-G-A-T-A--TGAGATTTC
* * * **
79318193 GTATAAGACCATATCTAGGATATGGCATCGATATGTAGA-CCC
1 GTGTAAGACCATATCTGGGATATCGCATCGATATG-AGATTTC
* *
79318235 ATGTAAGACCATGTCTGGGA
1 GTGTAAGACCATATCTGGGA
79318255 CATGGCTTTG
Statistics
Matches: 155, Mismatches: 32, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
42 88 0.57
43 4 0.03
44 2 0.01
45 4 0.03
46 3 0.02
47 1 0.01
48 53 0.34
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATCGCATCGATATGAGATTTC
Found at i:79318188 original size:90 final size:90
Alignment explanation
Indices: 79318094--79318260 Score: 228
Period size: 90 Copynumber: 1.9 Consensus size: 90
79318084 CGCATTGATA
* * * * * * * *
79318094 TGAGATTTTGTGTAAGACCATGTTTGGGACATGGCATCGATGTG-AGGTCCCGTGTAAGACCATA
1 TGAGATTTCGTATAAGACCATATCTAGGACATGGCATCGATATGTA-GACCCATGTAAGACCATA
79318158 TCTGGGACATGGCATCAGCACTGACG
65 TCTGGGACATGGCATCAGCACTGACG
* *
79318184 TGAGATTTCGTATAAGACCATATCTAGGATATGGCATCGATATGTAGACCCATGTAAGACCATGT
1 TGAGATTTCGTATAAGACCATATCTAGGACATGGCATCGATATGTAGACCCATGTAAGACCATAT
79318249 CTGGGACATGGC
66 CTGGGACATGGC
79318261 TTTGAAATTC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
90 65 0.98
91 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (90 bp):
TGAGATTTCGTATAAGACCATATCTAGGACATGGCATCGATATGTAGACCCATGTAAGACCATAT
CTGGGACATGGCATCAGCACTGACG
Found at i:79318200 original size:132 final size:132
Alignment explanation
Indices: 79318013--79318260 Score: 311
Period size: 132 Copynumber: 1.9 Consensus size: 132
79318003 ATGTGTGCCA
* * * ** * * *
79318013 GTGTAAGACCATATTTGGGATATGGCGTCAGCCTCGGTATGTGATTTCATGTAAGACCATATCTG
1 GTGTAAGACCATATCTGGGACATGGCATCAGCCTCGACATGAGATTTCATATAAGACCATATCTA
* **** *
79318078 GGATATCGCATTGATATG-AGATTTTGTGTAAGACCATGTTTGGGACATGGCATCGATGTGAGGT
66 GGATATCGCATCGATATGTAGA-CCCATGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGT
79318142 CCC
130 CCC
* *
79318145 GTGTAAGACCATATCTGGGACATGGCATCAGCACT-GACGTGAGATTTCGTATAAGACCATATCT
1 GTGTAAGACCATATCTGGGACATGGCATCAGC-CTCGACATGAGATTTCATATAAGACCATATCT
*
79318209 AGGATATGGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGC
65 AGGATATCGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGC
79318261 TTTGAAATTC
Statistics
Matches: 97, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
132 92 0.95
133 5 0.05
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (132 bp):
GTGTAAGACCATATCTGGGACATGGCATCAGCCTCGACATGAGATTTCATATAAGACCATATCTA
GGATATCGCATCGATATGTAGACCCATGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGTC
CC
Found at i:79318260 original size:42 final size:42
Alignment explanation
Indices: 79318062--79318260 Score: 175
Period size: 42 Copynumber: 4.6 Consensus size: 42
79318052 TGTGATTTCA
* * * ***
79318062 TGTAAGACCATATCTGGGATATCGCATTGATATGAGATTTTG
1 TGTAAGACCATATCTGGGACATGGCATCGATATGAGATCCCG
* * * *
79318104 TGTAAGACCATGTTTGGGACATGGCATCGATGTGAGGTCCCG
1 TGTAAGACCATATCTGGGACATGGCATCGATATGAGATCCCG
**
79318146 TGTAAGACCATATCTGGGACATGGCATCAGCACTGACGTGAGATTTCG
1 TGTAAGACCATATCTGGGACATGGCATC-G-A-T-A--TGAGATCCCG
* * * *
79318194 TATAAGACCATATCTAGGATATGGCATCGATATGTAGA-CCCA
1 TGTAAGACCATATCTGGGACATGGCATCGATATG-AGATCCCG
*
79318236 TGTAAGACCATGTCTGGGACATGGC
1 TGTAAGACCATATCTGGGACATGGC
79318261 TTTGAAATTC
Statistics
Matches: 124, Mismatches: 26, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
42 82 0.66
43 4 0.03
44 2 0.02
45 2 0.02
46 1 0.01
47 1 0.01
48 32 0.26
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCATCGATATGAGATCCCG
Found at i:79330046 original size:49 final size:49
Alignment explanation
Indices: 79329976--79330226 Score: 457
Period size: 49 Copynumber: 5.1 Consensus size: 49
79329966 ATACATAATA
*
79329976 ATATACGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
79330025 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
79330074 ATATATGTGATGAGGCCTCATGCCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
79330123 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
79330172 ATATATGTGATGAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
79330221 ATATAT
1 ATATAT
79330227 ATATGTGGTA
Statistics
Matches: 195, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 195 1.00
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:79332230 original size:18 final size:18
Alignment explanation
Indices: 79332207--79332243 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
79332197 CGGACTAAGT
79332207 TCCGAAGAGCATTCGTGC
1 TCCGAAGAGCATTCGTGC
79332225 TCCGAAGAGCATTCGTGC
1 TCCGAAGAGCATTCGTGC
79332243 T
1 T
79332244 AGTGATGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (18 bp):
TCCGAAGAGCATTCGTGC
Found at i:79332284 original size:40 final size:40
Alignment explanation
Indices: 79332225--79332448 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
79332215 GCATTCGTGC
*
79332225 TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGT
1 TCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
79332265 TCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
1 TCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
*
79332305 TCCGAAGAGCATTCATGCTAGTGATATATCCGGACTAAGT
1 TCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
*
79332345 TCTGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
1 TCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
* * * **
79332385 TCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTTGGT
1 TCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
* * *
79332425 CCCGAAGAGCAATCATGCTGGTGA
1 TCCGAAGAGCATTCATGCTAGTGA
79332449 CGTGTATTCT
Statistics
Matches: 170, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 170 1.00
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGAAGAGCATTCATGCTAGTGATGTATCCGGACTAAGT
Found at i:79336296 original size:22 final size:22
Alignment explanation
Indices: 79336271--79336323 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
79336261 ATGTATATAT
79336271 ATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAGGCCTAATGGCCG
79336293 ATGTGATGAGGCCTAATGGCCG
1 ATGTGATGAGGCCTAATGGCCG
79336315 ATGTGATGA
1 ATGTGATGA
79336324 ATGTGAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.25, C:0.15, G:0.36, T:0.25
Consensus pattern (22 bp):
ATGTGATGAGGCCTAATGGCCG
Found at i:79336311 original size:71 final size:71
Alignment explanation
Indices: 79336224--79336372 Score: 298
Period size: 71 Copynumber: 2.1 Consensus size: 71
79336214 TAATAATATA
79336224 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAATG
1 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAATG
79336289 GCCGAT
66 GCCGAT
79336295 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAATG
1 GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAATG
79336360 GCCGAT
66 GCCGAT
79336366 GTGATGA
1 GTGATGA
79336373 ATGTGAAAAT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 78 1.00
ACGTcount: A:0.30, C:0.11, G:0.32, T:0.28
Consensus pattern (71 bp):
GTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAATG
GCCGAT
Found at i:79336346 original size:49 final size:49
Alignment explanation
Indices: 79336293--79336588 Score: 549
Period size: 49 Copynumber: 6.0 Consensus size: 49
79336283 CTAATGGCCG
79336293 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
1 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
79336342 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
1 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
79336391 ATGTGATGAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
1 ATGTGATG-AGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
79336441 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
1 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
*
79336490 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
1 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
* *
79336539 ATGTGATGAGGCCTAATGG-CGACGTGATGAATGTGAAAGTGTATATAT
1 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
79336587 AT
1 AT
79336589 ATATATGTGG
Statistics
Matches: 242, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
48 29 0.12
49 164 0.68
50 49 0.20
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (49 bp):
ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATAT
Found at i:79336394 original size:27 final size:27
Alignment explanation
Indices: 79336364--79336449 Score: 74
Period size: 27 Copynumber: 3.3 Consensus size: 27
79336354 CTAATGGCCG
79336364 ATGTGATGAATGTGAAAATGTATATAT
1 ATGTGATGAATGTGAAAATGTATATAT
** ****
79336391 ATGTGATGAA-G-GCCTAATG---GCCG
1 ATGTGATGAATGTG-AAAATGTATATAT
79336414 ATGTGATGAATGTGAAAATGTATATAT
1 ATGTGATGAATGTGAAAATGTATATAT
79336441 ATGTGATGA
1 ATGTGATGA
79336450 GGCCTAATGG
Statistics
Matches: 41, Mismatches: 12, Indels: 12
0.63 0.18 0.18
Matches are distributed among these distances:
23 10 0.24
24 5 0.12
25 2 0.05
26 5 0.12
27 19 0.46
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.33
Consensus pattern (27 bp):
ATGTGATGAATGTGAAAATGTATATAT
Found at i:79336417 original size:99 final size:99
Alignment explanation
Indices: 79336293--79336588 Score: 553
Period size: 99 Copynumber: 3.0 Consensus size: 99
79336283 CTAATGGCCG
79336293 ATGTGATG-AGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTA
1 ATGTGATGAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTA
79336357 ATGGCCGATGTGATGAATGTGAAAATGTATATAT
66 ATGGCCGATGTGATGAATGTGAAAATGTATATAT
79336391 ATGTGATGAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTA
1 ATGTGATGAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTA
79336456 ATGGCCGATGTGATGAATGTGAAAATGTATATAT
66 ATGGCCGATGTGATGAATGTGAAAATGTATATAT
79336490 ATGTGAT-AAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTA
1 ATGTGATGAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTA
* *
79336554 ATGG-CGACGTGATGAATGTGAAAGTGTATATAT
66 ATGGCCGATGTGATGAATGTGAAAATGTATATAT
79336587 AT
1 AT
79336589 ATATATGTGG
Statistics
Matches: 195, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
97 29 0.15
98 69 0.35
99 97 0.50
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (99 bp):
ATGTGATGAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTA
ATGGCCGATGTGATGAATGTGAAAATGTATATAT
Found at i:79336590 original size:148 final size:148
Alignment explanation
Indices: 79336293--79336588 Score: 551
Period size: 148 Copynumber: 2.0 Consensus size: 148
79336283 CTAATGGCCG
*
79336293 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAGGCCTAA
1 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
*
79336358 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAAGGCCTAATGGCCGATGTGATGA
66 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAAGGCCTAATGGCCGACGTGATGA
79336423 ATGTGAAAATGTATATAT
131 ATGTGAAAATGTATATAT
79336441 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
1 ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
79336506 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATG-AGGCCTAATGG-CGACGTGATGA
66 TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAAGGCCTAATGGCCGACGTGATGA
*
79336569 ATGTGAAAGTGTATATAT
131 ATGTGAAAATGTATATAT
79336587 AT
1 AT
79336589 ATATATGTGG
Statistics
Matches: 145, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
146 29 0.20
147 11 0.08
148 105 0.72
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (148 bp):
ATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGCCTAA
TGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATGAAGGCCTAATGGCCGACGTGATGA
ATGTGAAAATGTATATAT
Found at i:79336716 original size:37 final size:36
Alignment explanation
Indices: 79336661--79336747 Score: 138
Period size: 37 Copynumber: 2.3 Consensus size: 36
79336651 AACTTGGAAA
79336661 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
79336699 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
*
79336736 TATGTCCAGGTA
1 TATGTCCGGGTA
79336748 AGACTTCGTA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.89
38 4 0.09
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:79339623 original size:40 final size:39
Alignment explanation
Indices: 79339578--79339707 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
79339568 CGGAATATAA
79339578 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
79339618 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
79339658 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
79339698 CCGGATATAA
1 CCGGATATAA
79339708 TTTCCAGCAT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
38 1 0.01
40 69 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79339722 original size:40 final size:40
Alignment explanation
Indices: 79339594--79339745 Score: 148
Period size: 40 Copynumber: 3.8 Consensus size: 40
79339584 ATAACCATGT
* * *
79339594 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTC-CA
* ** * *
79339634 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79339674 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
* *
79339714 GCATAATTGTCTTCGGGAT-TTAGCCCGGATAT
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATAT
79339746 CATTCAATTT
Statistics
Matches: 91, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
39 2 0.02
40 86 0.95
41 3 0.03
ACGTcount: A:0.22, C:0.26, G:0.24, T:0.28
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATCTCCA
Found at i:79339728 original size:80 final size:80
Alignment explanation
Indices: 79339594--79339743 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
79339584 ATAACCATGT
*
79339594 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
79339658 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
79339674 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
79339737 CCCGGAT
64 CCCGGAT
79339744 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:79345609 original size:40 final size:40
Alignment explanation
Indices: 79345564--79345731 Score: 207
Period size: 40 Copynumber: 4.2 Consensus size: 40
79345554 CGGAATACAA
79345564 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* * * *
79345604 CCGGATATAACGACTCGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* **
79345644 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
* *
79345684 CCGGATA-AAGTCACTA-GCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAA-CCAC-ACGCACGAA-TGCCTTCGGGTCTTAGC
79345724 CCGGATAT
1 CCGGATAT
79345732 CATTCAATTG
Statistics
Matches: 112, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
39 4 0.04
40 108 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGC
Found at i:79345704 original size:80 final size:80
Alignment explanation
Indices: 79345564--79345731 Score: 241
Period size: 80 Copynumber: 2.1 Consensus size: 80
79345554 CGGAATACAA
* *
79345564 CCGGATATAACCACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTCGCACAAATG
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
*
79345629 CCTTCGGGTATTAGC
66 CCTTCGGGTATTAAC
** *
79345644 CCGGATATAACAACTTGCACGAATGCCTTCGGGTCTTAGCCCGGATA-AA-GTCACTAGCACAAT
1 CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACG--ACTAGCACAAA
*
79345707 TGCCTTCGGGTCTTAAC
64 TGCCTTCGGGTATTAAC
79345724 CCGGATAT
1 CCGGATAT
79345732 CATTCAATTG
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
78 1 0.01
79 2 0.03
80 76 0.96
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (80 bp):
CCGGATATAACAACACGCACGAATGCCTTCGGGTCTTAGCCCGGATATAACGACTAGCACAAATG
CCTTCGGGTATTAAC
Found at i:79347793 original size:5 final size:5
Alignment explanation
Indices: 79347783--79347813 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
79347773 GTAAATATAT
79347783 TATTA TATTA TATTA TATTA TTATTA TATTA
1 TATTA TATTA TATTA TATTA -TATTA TATTA
79347814 AAATATAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:79347820 original size:21 final size:21
Alignment explanation
Indices: 79347780--79347820 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79347770 TAAGTAAATA
* *
79347780 TATTATTATATTATATTATAT
1 TATTATTATATTAAAATATAT
79347801 TATTATTATATTAAAATATA
1 TATTATTATATTAAAATATA
79347821 AAGTAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
TATTATTATATTAAAATATAT
Found at i:79348387 original size:24 final size:23
Alignment explanation
Indices: 79348359--79348405 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
79348349 AATATTCAAT
79348359 ATGAAATTGAATTGTGTTATATTG
1 ATGAAATTGAATTGTGTTA-ATTG
* * *
79348383 ATGAATTTTAATTGTTTTAATTG
1 ATGAAATTGAATTGTGTTAATTG
79348406 CATAGCTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (23 bp):
ATGAAATTGAATTGTGTTAATTG
Found at i:79348612 original size:24 final size:23
Alignment explanation
Indices: 79348580--79348638 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
79348570 ATGTTTTACA
*
79348580 ATTGAAATTGATTGATTTAGTATGTG
1 ATTG-AATTGATTAATTTA-TAT-TG
79348606 A-TGAATT-ATTTAATTTATATTG
1 ATTGAATTGA-TTAATTTATATTG
79348628 ATTGAATTGAT
1 ATTGAATTGAT
79348639 ATATATATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
22 3 0.10
23 11 0.38
24 12 0.41
25 2 0.07
26 1 0.03
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (23 bp):
ATTGAATTGATTAATTTATATTG
Found at i:79350082 original size:15 final size:17
Alignment explanation
Indices: 79350064--79350096 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
79350054 AGCATAATTT
79350064 ACCAAA-TCA-ATTCAC
1 ACCAAACTCACATTCAC
79350079 ACCAAACTCACATTCAC
1 ACCAAACTCACATTCAC
79350096 A
1 A
79350097 AGTTTCAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 3 0.19
17 7 0.44
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (17 bp):
ACCAAACTCACATTCAC
Found at i:79350932 original size:41 final size:41
Alignment explanation
Indices: 79350887--79350984 Score: 169
Period size: 41 Copynumber: 2.4 Consensus size: 41
79350877 GACAGGCCTG
* *
79350887 CTCACACAAGCTGTCAGTTAAGATGTAGCTACGCGGTGCTA
1 CTCACACAAGCTGTCAGTCAAGATGTAGCTACGCGGAGCTA
*
79350928 CTCACACAAGCTGTCAGTCAAGATGTAGCTACGCGGAGCTG
1 CTCACACAAGCTGTCAGTCAAGATGTAGCTACGCGGAGCTA
79350969 CTCACACAAGCTGTCA
1 CTCACACAAGCTGTCA
79350985 AGTATTCACA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
CTCACACAAGCTGTCAGTCAAGATGTAGCTACGCGGAGCTA
Found at i:79355197 original size:27 final size:28
Alignment explanation
Indices: 79355167--79355266 Score: 109
Period size: 27 Copynumber: 3.7 Consensus size: 28
79355157 TTTAGTTTAC
79355167 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
79355194 TAAAAATACTGAAATACCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
* * *
79355221 TAAATTTACCGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTAGATTTG
79355248 TAAAATTACC-AAAGTACCC
1 TAAAATTACCGAAA-TACCC
79355267 CCGATTTACA
Statistics
Matches: 61, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.11
27 52 0.85
28 2 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTAGATTTG
Found at i:79355266 original size:54 final size:54
Alignment explanation
Indices: 79355167--79355273 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
79355157 TTTAGTTTAC
* * *
79355167 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
79355221 TAAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
79355274 ACAGAATTAC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:79355284 original size:54 final size:53
Alignment explanation
Indices: 79355169--79355285 Score: 121
Period size: 54 Copynumber: 2.2 Consensus size: 53
79355159 TAGTTTACTA
* * * **
79355169 AAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTGT
1 AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTAC
* *
79355222 AAATTTACCGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTTAC
1 AAA-TTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTTAC
79355276 AGAATTACCG
1 A-AATTACCG
79355286 TTTTACCCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
53 11 0.21
54 40 0.75
55 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTAC
Found at i:79355292 original size:27 final size:27
Alignment explanation
Indices: 79355262--79355472 Score: 282
Period size: 27 Copynumber: 7.8 Consensus size: 27
79355252 ATTACCAAAG
*
79355262 TACCCCCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
79355289 TACCC-CTAATTTACATAATTACCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
79355316 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTACAGAATTACCGTTT
* *
79355343 TACCCTCGACTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
79355370 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
79355397 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
* *
79355424 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCGTTT
*
79355451 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
79355473 TAAAATACCC
Statistics
Matches: 168, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 1 0.01
27 166 0.99
28 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCGTTT
Found at i:79355481 original size:27 final size:27
Alignment explanation
Indices: 79355451--79355618 Score: 119
Period size: 27 Copynumber: 6.2 Consensus size: 27
79355441 ATTACTGTTT
*
79355451 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
79355478 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* **
79355505 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACCAAAA
* * *** *
79355532 TACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTCGATTTACAAAATTACCAAAA
* **
79355559 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACCAAAA
*
79355586 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTACAAAATTACCA-AAA
79355613 TACCCT
1 TACCCT
79355619 TGACTTTCTA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
26 5 0.04
27 113 0.96
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCAAAA
Found at i:79355498 original size:81 final size:81
Alignment explanation
Indices: 79355262--79355499 Score: 198
Period size: 81 Copynumber: 2.9 Consensus size: 81
79355252 ATTACCAAAG
* * * * * ****
79355262 TACCCCCGATTTACAGAATTACCGTTTTACCC-CTAATTTACATAATTACCGTTTTACCCCT-GA
1 TACCCTCGACTTACAGAATTATCGTTTTACCCTC-GATTTACAAAATTACCAAAATA-CCCTAGA
* *
79355325 TTTACATAATTA-TCGTTT
64 TTTATAAAATTACT-GTTT
* **** *
79355343 TACCCTCGACTTACAGAATTATCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGACTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATT
*
79355408 TATAGAATTACTGTTT
66 TATAAAATTACTGTTT
* * *
79355424 TACCCTTGATTTACAGAATTA-CTGTTTTACCCTCGATTTACAAAATTACTAAAATACCCCTAG-
1 TACCCTCGACTTACAGAATTATC-GTTTTACCCTCGATTTACAAAATTACCAAAATA-CCCTAGA
*
79355487 TTTGTAAAATTAC
64 TTTATAAAATTAC
79355500 CAAAATACCC
Statistics
Matches: 134, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 5 0.04
81 122 0.91
82 7 0.05
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGACTTACAGAATTATCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATT
TATAAAATTACTGTTT
Found at i:79355509 original size:54 final size:54
Alignment explanation
Indices: 79355451--79355592 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 54
79355441 ATTACTGTTT
* ** *
79355451 TACCCTCGATTTACAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
* * * * *
79355505 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
79355559 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
79355593 GATTTACAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
53 1 0.01
54 73 0.97
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
Found at i:79355613 original size:54 final size:52
Alignment explanation
Indices: 79355451--79355618 Score: 160
Period size: 54 Copynumber: 3.1 Consensus size: 52
79355441 ATTACTGTTT
* ** * *
79355451 TACCCTCGATTTACAAAATTACTAAAATACCCCTAGTTTGTAAAATTACCA-AAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCT-GATT-TAAAATTA-CAGAAA
* * * * *
79355505 TACCC-CTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCT-GATT-TAAAATTACAGAAA
79355559 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTA-AAA-TTACAGAAA
79355613 TACCCT
1 TACCCT
79355619 TGACTTTCTA
Statistics
Matches: 95, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
52 1 0.01
53 8 0.08
54 85 0.89
55 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.30
Consensus pattern (52 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAAAATTACAGAAA
Found at i:79355668 original size:27 final size:27
Alignment explanation
Indices: 79355629--79355680 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
79355619 TGACTTTCTA
79355629 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
79355656 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
79355681 GTTGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.37
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:79355798 original size:27 final size:27
Alignment explanation
Indices: 79355734--79355798 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
79355724 ACCCCTAAAA
*
79355734 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* *
79355761 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
79355788 GGTAAAATGAC
1 GGTAAAATGAC
79355799 GAATATGCCC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 32 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:79356984 original size:25 final size:25
Alignment explanation
Indices: 79356955--79357002 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79356945 TTATAATATG
* * *
79356955 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79356980 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
79357003 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79357064 original size:20 final size:20
Alignment explanation
Indices: 79357039--79357109 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
79357029 ATTTTGATAA
79357039 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
* **
79357059 ACATGACATACATGATATGC
1 ACATGATATGTATGATATGC
79357079 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79357099 ACATGAGATGT
1 ACATGATATGT
79357110 TCATAAATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79357082 original size:11 final size:11
Alignment explanation
Indices: 79357050--79357104 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
79357040 CATGATATGT
79357050 ATGATATGCAC
1 ATGATATGCAC
*
79357061 ATGACAT--AC
1 ATGATATGCAC
79357070 ATGATATGCAC
1 ATGATATGCAC
*
79357081 ATGATATG--T
1 ATGATATGCAC
79357090 ATGATATGCAC
1 ATGATATGCAC
79357101 ATGA
1 ATGA
79357105 GATGTTCATA
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:79357210 original size:23 final size:23
Alignment explanation
Indices: 79357156--79357322 Score: 235
Period size: 23 Copynumber: 7.1 Consensus size: 23
79357146 AGGAAGTGCA
*
79357156 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
79357180 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
79357203 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
79357226 AAAGGGCTTATGCCCCAGTTATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
79357250 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
79357273 AAAGGGCTTATGCCCTAGTGATCA
1 AAAGGGCTTATGCCCCAGTTAT-T
* * *
79357297 AAAGGGCTTTTGCCCCAATTACT
1 AAAGGGCTTATGCCCCAGTTATT
79357320 AAA
1 AAA
79357323 AGAGGCTAGG
Statistics
Matches: 129, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
23 68 0.53
24 61 0.47
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.28
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:79357254 original size:47 final size:47
Alignment explanation
Indices: 79357154--79357322 Score: 259
Period size: 47 Copynumber: 3.6 Consensus size: 47
79357144 GGAGGAAGTG
*
79357154 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
*
79357202 -TAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* *
79357248 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCTAGTGAT
1 CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
* * *
79357295 CAAAAGGGCTTTTGCCCCAATTACTAAA
1 CAAAAGGGCTTATGCCCCAGTTATTAAA
79357323 AGAGGCTAGG
Statistics
Matches: 112, Mismatches: 8, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
46 22 0.20
47 90 0.80
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (47 bp):
CAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:79357269 original size:70 final size:71
Alignment explanation
Indices: 79357154--79357313 Score: 277
Period size: 70 Copynumber: 2.3 Consensus size: 71
79357144 GGAGGAAGTG
79357154 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
*
79357219 AGTTAT
66 AGTGAT
* *
79357225 -TAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCT
1 CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
79357289 AGTGAT
66 AGTGAT
*
79357295 CAAAAGGGCTTTTGCCCCA
1 CAAAAGGGCTTATGCCCCA
79357314 ATTACTAAAA
Statistics
Matches: 83, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
70 67 0.81
71 16 0.19
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.27
Consensus pattern (71 bp):
CAAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCC
AGTGAT
Found at i:79358643 original size:12 final size:13
Alignment explanation
Indices: 79358615--79358641 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
79358605 TTTTATTATT
79358615 AATTAAAAGAAAA
1 AATTAAAAGAAAA
79358628 AATTAAAAGAAAA
1 AATTAAAAGAAAA
79358641 A
1 A
79358642 TTGCTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (13 bp):
AATTAAAAGAAAA
Found at i:79360598 original size:15 final size:16
Alignment explanation
Indices: 79360578--79360611 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
79360568 AAACCTGTAA
79360578 AAATTAAAT-TAAAAT
1 AAATTAAATATAAAAT
79360593 AAATTAAATACTAAAAT
1 AAATTAAATA-TAAAAT
79360610 AA
1 AA
79360612 CCAAACTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
17 8 0.47
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (16 bp):
AAATTAAATATAAAAT
Found at i:79362244 original size:20 final size:20
Alignment explanation
Indices: 79362219--79362263 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
79362209 AGGGACTAAA
* *
79362219 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
79362239 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
79362259 ATGAA
1 ATGAA
79362264 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:79367346 original size:87 final size:87
Alignment explanation
Indices: 79367200--79367358 Score: 237
Period size: 87 Copynumber: 1.8 Consensus size: 87
79367190 GTGGCATGGT
* * * * *
79367200 CGTGTGTGCAAGTTAGAGAGTTACACGGGGTCAAACACGACCTCTAGTACGGGTGTGTCCTAGGG
1 CGTGTGTGCAAGTCAGAGAGTTACACGAGGTCAAACACGACCTCTAGCACGGGCGTGTCCCAGGG
79367265 TCACACGGACGTGAGGCAGGGC
66 TCACACGGACGTGAGGCAGGGC
** *
79367287 CGTGTGTGCAAGTCAGAGAGTTACATTAGGTCGAACACGACCTCTAGCACGGGCGTGTCCCAGGG
1 CGTGTGTGCAAGTCAGAGAGTTACACGAGGTCAAACACGACCTCTAGCACGGGCGTGTCCCAGGG
*
79367352 TTACACG
66 TCACACG
79367359 AGCGTCTCCC
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
87 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.20
Consensus pattern (87 bp):
CGTGTGTGCAAGTCAGAGAGTTACACGAGGTCAAACACGACCTCTAGCACGGGCGTGTCCCAGGG
TCACACGGACGTGAGGCAGGGC
Found at i:79374071 original size:31 final size:32
Alignment explanation
Indices: 79374014--79374075 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
79374004 ACGAAGTCAC
*
79374014 CAGATATAGATATTGTGGCTAAGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
* *
79374046 CAGATATATATA-TGTGGCGACGCCACCAGA
1 CAGATATAGATATTGTGGCGAAGCCACCAGA
79374076 TTGCAGCAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:79374139 original size:27 final size:26
Alignment explanation
Indices: 79374091--79374142 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
79374081 GCAAGGCTGC
*
79374091 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
79374117 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
79374143 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:79374147 original size:67 final size:68
Alignment explanation
Indices: 79374021--79374159 Score: 199
Period size: 67 Copynumber: 2.0 Consensus size: 68
79374011 CACCAGATAT
* *
79374021 AGATATTGTGGCTAAGCCACCAGAACAGATATATATATGTGGCGACGCCACCAGATTGCAGCAAG
1 AGATATTGTGACGAAGCCACCAGAACAG--A-ATATATGTGGCGACGCCACCAGATTGCAGCAAG
79374086 GCTGCC
63 GCTGCC
* * *
79374092 AGATATTGTGACGAAGTCACCAGAACAG-ATATATGTGGCGAGGCCACCAGATTGCAGCGAGGCT
1 AGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGCGACGCCACCAGATTGCAGCAAGGCT
79374156 GCC
66 GCC
79374159 A
1 A
79374160 AAATGCTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
67 38 0.60
71 25 0.40
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (68 bp):
AGATATTGTGACGAAGCCACCAGAACAGAATATATGTGGCGACGCCACCAGATTGCAGCAAGGCT
GCC
Found at i:79392345 original size:20 final size:20
Alignment explanation
Indices: 79392311--79392355 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
79392301 AGGGACTAAA
* *
79392311 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
* *
79392331 ATGAAAAATTCTAAACTTTT
1 ATGAAAAATTCTAAAATTTG
79392351 ATGAA
1 ATGAA
79392356 TACATGTACT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.47, C:0.04, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:79397590 original size:45 final size:45
Alignment explanation
Indices: 79397539--79397693 Score: 187
Period size: 45 Copynumber: 3.5 Consensus size: 45
79397529 AGGATTTCCA
*
79397539 ATATATGT-GTTCTCGTGTAAGACCACGTCTGGGACATTGGCATCG
1 ATATATGTGGTT-TCGTGTAAGACCACGTCTAGGACATTGGCATCG
* * *
79397584 ATATATGTGGTTACATGTAAGACCACGTCTAGGACGTTGGCATCG
1 ATATATGTGGTTTCGTGTAAGACCACGTCTAGGACATTGGCATCG
* *
79397629 ATATATGTGGTTAT-GTGTAAGACCATGTCTAGGACATCGGCATCG
1 ATATATGTGGTT-TCGTGTAAGACCACGTCTAGGACATTGGCATCG
*
79397674 -TAT-T-T-GATTCGTGTAAGACC
1 ATATATGTGGTTTCGTGTAAGACC
79397694 CTATCTGGGA
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
40 1 0.01
41 12 0.12
42 1 0.01
43 1 0.01
44 3 0.03
45 76 0.78
46 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (45 bp):
ATATATGTGGTTTCGTGTAAGACCACGTCTAGGACATTGGCATCG
Found at i:79403787 original size:40 final size:40
Alignment explanation
Indices: 79403696--79403846 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
79403686 ATAACCACGT
* *
79403696 GCACGAATGCCTTCGGGTCTTAGCCCAGATAGAATGACTC
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
79403736 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-GTA-GCCACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
79403776 GCAC-AATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
** * *
79403816 GCATAAATGTCTTCGGGACTTAGCCCGGATA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATA
79403847 TCATTCAATT
Statistics
Matches: 92, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
38 1 0.01
39 4 0.04
40 84 0.91
41 3 0.03
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:79411958 original size:40 final size:40
Alignment explanation
Indices: 79411903--79411983 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
79411893 ATTCTTCAGG
79411903 AAACATATCAGTAAATTCCTTGTCTGTCAATAACTAATCA
1 AAACATATCAGTAAATTCCTTGTCTGTCAATAACTAATCA
79411943 AAACATATCAGTAAATTCCTTGTCTGTCAATAACTAATCA
1 AAACATATCAGTAAATTCCTTGTCTGTCAATAACTAATCA
79411983 A
1 A
79411984 TCTTCGACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (40 bp):
AAACATATCAGTAAATTCCTTGTCTGTCAATAACTAATCA
Found at i:79414193 original size:18 final size:18
Alignment explanation
Indices: 79414170--79414205 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
79414160 CTAATGTTGG
79414170 ATATGAAATTGTAATTGT
1 ATATGAAATTGTAATTGT
*
79414188 ATATGAAATTGTCATTGT
1 ATATGAAATTGTAATTGT
79414206 TTTAGGTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.17, T:0.44
Consensus pattern (18 bp):
ATATGAAATTGTAATTGT
Found at i:79417216 original size:48 final size:48
Alignment explanation
Indices: 79417160--79417632 Score: 640
Period size: 48 Copynumber: 9.9 Consensus size: 48
79417150 TGGCAATATC
*
79417160 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGTTACG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
* * *
79417208 TGAGCCAGTGTAAGACTATGTCTGGGACATGGCATCGGTATTGTTATG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
* * * * *
79417256 TGAGCCAATGTAGGACCATGTCTGGTACATGGCATTGGCATTGTTACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
* * * * *
79417304 CGAGCCAATGTAAGACCATGTCTGGGAAATGGCATCAGCATTGTTGCG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
* * *
79417352 TAAGCCAGTGTAAGACCATGTCTTGGACATGGCATCGACATTGTTACG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
*
79417400 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
* ** * *
79417448 TAAGCCAAAGTAAGGCCATGTCTGGGACATGGCATCGACATTGTTACG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
* * *
79417496 TGAGCCAATGTAAGACCATGTTTGGGACATGGCATCGGCATTGTTACA
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
* * * * *
79417544 TGAGCTAGTGGAAGACCATGTTTGGGACATGGCATCGGCATCGTTATG
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
** *
79417592 TGAGATAGCGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
79417633 GAGGCATCGT
Statistics
Matches: 377, Mismatches: 48, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 377 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGTTACG
Found at i:79420309 original size:25 final size:25
Alignment explanation
Indices: 79420280--79420329 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
79420270 CCTTATAATA
* * *
79420280 TAAAAATGACCGTTTTGCCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
79420305 TAAAAATGACCATTATACCCCTAGG
1 TAAAAATGACCATTATACCCCTAGG
79420330 GTTTATATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (25 bp):
TAAAAATGACCATTATACCCCTAGG
Found at i:79420380 original size:9 final size:9
Alignment explanation
Indices: 79420368--79420424 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79420358 TTTGATAAAC
79420368 ATGATATGT
1 ATGATATGT
*
79420377 ATGATATGCAC
1 ATGATATG--T
*
79420388 ATGACATGT
1 ATGATATGT
*
79420397 ATGATATGCAC
1 ATGATATG--T
79420408 ATGATATGT
1 ATGATATGT
79420417 ATGATATG
1 ATGATATG
79420425 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79420391 original size:20 final size:20
Alignment explanation
Indices: 79420366--79420428 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
79420356 ATTTTGATAA
79420366 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79420386 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79420406 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79420426 ACA
1 ACA
79420429 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79420511 original size:26 final size:25
Alignment explanation
Indices: 79420482--79420534 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
79420472 GAGGAAGTGC
79420482 AAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTT-TGCCCCAGTTATTAA
*
79420508 AAAAGGGCTTTGCCCTAGTTATTAA
1 AAAAGGGCTTTGCCCCAGTTATTAA
79420533 AA
1 AA
79420535 GAGGCTAGGC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTATTAA
Found at i:79420552 original size:25 final size:25
Alignment explanation
Indices: 79420482--79420554 Score: 76
Period size: 25 Copynumber: 2.9 Consensus size: 25
79420472 GAGGAAGTGC
*
79420482 AAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGC-TAGGCCCCAGTTATTAA
** *
79420508 AAAAGGGCTTTGCCCTAGTTATTAA
1 AAAAGGGCTAGGCCCCAGTTATTAA
*
79420533 AAGA-GGCTAGGCCTCCAGTTAT
1 AAAAGGGCTAGGCC-CCAGTTAT
79420555 ATGATAAAGC
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 7 0.17
25 25 0.62
26 8 0.20
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTAGGCCCCAGTTATTAA
Found at i:79420785 original size:31 final size:31
Alignment explanation
Indices: 79420747--79420810 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
79420737 CGTTTACAGT
*
79420747 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCACTAATATGAAATATGA
* ** *
79420778 AAAGGCTTCGGCCCACTGTTATGAATTATGA
1 AAAGGCTTCAGCCCACTAATATGAAATATGA
79420809 AA
1 AA
79420811 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCACTAATATGAAATATGA
Found at i:79428344 original size:25 final size:25
Alignment explanation
Indices: 79428315--79428363 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
79428305 TTATAATATG
* * *
79428315 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
79428340 AAAATGACCATTATACCCCTAGGT
1 AAAATGACCATTATACCCCTAGGT
79428364 TTATATATGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:79428412 original size:9 final size:9
Alignment explanation
Indices: 79428400--79428456 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79428390 TTTGATAAAC
79428400 ATGATATGT
1 ATGATATGT
*
79428409 ATGATATGCAC
1 ATGATATG--T
*
79428420 ATGACATGT
1 ATGATATGT
*
79428429 ATGATATGCAC
1 ATGATATG--T
79428440 ATGATATGT
1 ATGATATGT
79428449 ATGATATG
1 ATGATATG
79428457 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:79428423 original size:20 final size:20
Alignment explanation
Indices: 79428398--79428460 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
79428388 ATTTTGATAA
79428398 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
79428418 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
79428438 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79428458 ACA
1 ACA
79428461 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79428584 original size:47 final size:47
Alignment explanation
Indices: 79428515--79428612 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
79428505 AGGAAGTGCA
*
79428515 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTTTT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
79428562 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
79428610 AAA
1 AAA
79428613 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 23 0.48
48 15 0.31
49 10 0.21
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:79428629 original size:25 final size:24
Alignment explanation
Indices: 79428514--79428633 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
79428504 GAGGAAGTGC
79428514 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79428538 AAAAGGGCTTATGCCCCAGTT-TT
1 AAAAGGGCTTATGCCCCAGTTATT
*
79428561 TAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
79428585 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
79428610 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
79428634 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
23 28 0.32
24 29 0.33
25 21 0.24
26 9 0.10
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:79428871 original size:31 final size:31
Alignment explanation
Indices: 79428829--79428890 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
79428819 TTACAGTAAA
79428829 GGCTTCAGCCCAGTAATATGAAATATGAAAT
1 GGCTTCAGCCCAGTAATATGAAATATGAAAT
* ** *
79428860 GGCTTCGGCCCAGTGTTATGAATTATGAAAT
1 GGCTTCAGCCCAGTAATATGAAATATGAAAT
79428891 ATGAAAAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (31 bp):
GGCTTCAGCCCAGTAATATGAAATATGAAAT
Found at i:79430068 original size:43 final size:41
Alignment explanation
Indices: 79429911--79430069 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 41
79429901 TATGTGTTTT
* *
79429911 CGTGTAAGACCATGTCTGGGACGTTGGCATTGACTTATGATTTA
1 CGTGTAAGACCATGTCTTGGACGTTGGCATCGA-TT-TGA-TTA
* * *
79429955 CGTGTAAGACCATGTC-TGAGACATCGGCATCGCATTTGATTT
1 CGTGTAAGACCATGTCTTG-GACGTTGGCATCG-ATTTGATTA
*
79429997 CGTGTAAGACGC-TGTCTTGGACAG-TGGCAACGATATTCGATTA
1 CGTGTAAGAC-CATGTCTTGGAC-GTTGGCATCGAT-TT-GATTA
*
79430040 CATGTAAGACCATGTCTTGGACGTTGGCAT
1 CGTGTAAGACCATGTCTTGGACGTTGGCAT
79430070 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 11, Indels: 19
0.76 0.09 0.15
Matches are distributed among these distances:
41 2 0.02
42 29 0.31
43 35 0.37
44 28 0.29
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (41 bp):
CGTGTAAGACCATGTCTTGGACGTTGGCATCGATTTGATTA
Found at i:79438688 original size:40 final size:41
Alignment explanation
Indices: 79438603--79438753 Score: 143
Period size: 40 Copynumber: 3.8 Consensus size: 41
79438593 AATTGAATGA
* ** * *
79438603 TATCCGGGCTAAGCCCCGAAGATAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGACA-TAC
* * *
79438643 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCT-GAGACATAC
*
79438684 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTG-TGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCTGAGACATAC
*
79438723 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
79438754 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 6 0.07
40 78 0.86
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.23
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCTGAGACATAC
Found at i:79438767 original size:40 final size:40
Alignment explanation
Indices: 79438640--79438769 Score: 133
Period size: 40 Copynumber: 3.2 Consensus size: 40
79438630 ATGCTGGAAA
* * *
79438640 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTA-GTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
* * *
79438680 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGTGAGACA---
1 TTATATCCGGGCTAAGACCCGAAGGCATT--TGTG-CACATGG
*
79438720 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
79438760 TTATATCCGG
1 TTATATCCGG
79438770 TTATATTCCG
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
37 3 0.04
38 4 0.06
40 60 0.83
42 5 0.07
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCACATGG
Found at i:79440584 original size:449 final size:448
Alignment explanation
Indices: 79439727--79440589 Score: 1672
Period size: 449 Copynumber: 1.9 Consensus size: 448
79439717 CAGAAAGAAT
*
79439727 TAGGAGTCATGCCTTACATTACAGATTCCATTTTGACTCTAGTTTCATTAGAAACAAATGGCACC
1 TAGGAGTCATGCCTTACATTACAGATTCAATTTTGACTCTAGTTTCATTAGAAACAAATGGCACC
79439792 AGAACTAAAGTCCTGTACAGTGAGATATTCAAGTTGTAACGCGCGAAGGTCAGAGCAGTCGATCC
66 AGAACTAAAGTCCTGTACAGTGAGATATTCAAGTTGTAACGCGCGAAGGTCAGAGCAGTCGATCC
79439857 CTGTAACATGGGCGACTTTAACTAATAAACTGTACCATTTGGCCTGACCAAAAATTCTAGAAATA
131 CTGTAACATGGGCGACTTTAACTAATAAACTGTACCATTTGGCCTGACCAAAAATTCTAGAAATA
*
79439922 AATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAATTTACGAAACCAGTTTCCGAGTTTGG
196 AATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAATTTACGAAACCAGTTTCCGAGTTTCG
79439987 AAACTCGAGATATGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTGACTGGAAATGTTAAA
261 AAACTCGAGATATGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTGACTGGAAATGTTAAA
*
79440052 TGGTGATGAAGATGGGCAAAACAAGTGAACTTGGCTTGTTAACCCCTCGTGTCCGACACCGGCGA
326 TGGTGATGAAGATGGGCAAAACAAGTGAACTTGGCTTGTTAACCCCTCATGTCCGACACCGGCGA
79440117 TGGTCTCGGGTTCGGGGTGTTACATAACGTCTCTGTGACAGCCCTAATTTGACCCTAG
391 TGGTCTCGGGTTCGGGGTGTTACATAACGTCTCTGTGACAGCCCTAATTTGACCCTAG
*
79440175 TAGGAGTCATGCCTTACATGTACAGATTCAATTTTGAGTCTAGTTTCATTAGAAACAAATGGCAC
1 TAGGAGTCATGCCTTACAT-TACAGATTCAATTTTGACTCTAGTTTCATTAGAAACAAATGGCAC
79440240 CAGAACTAAAGTCCTGTACAGTGAGATATTCAAGTTGTAACGCGCGAAGGTCAGAGCAGTCGATC
65 CAGAACTAAAGTCCTGTACAGTGAGATATTCAAGTTGTAACGCGCGAAGGTCAGAGCAGTCGATC
79440305 CCTGTAACATGGGCGACTTTAACTAATAAACTGTACCATTTGGCCTGACCAAAAATTCTAGAAAT
130 CCTGTAACATGGGCGACTTTAACTAATAAACTGTACCATTTGGCCTGACCAAAAATTCTAGAAAT
*
79440370 AAATCCATGGATGGATATATGAGTCTAAATTTAGGGAAAATTTACGAAACCAGTTTCCGAGTTTC
195 AAATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAATTTACGAAACCAGTTTCCGAGTTTC
79440435 GAAACTCGAGATATGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTGACTGGAAATGTTAA
260 GAAACTCGAGATATGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTGACTGGAAATGTTAA
79440500 ATGGTGATGAAGATGGGCAAAACAAGTGAACTTGGCTTGTTAACCCCTCATGTCCGACACCGGCG
325 ATGGTGATGAAGATGGGCAAAACAAGTGAACTTGGCTTGTTAACCCCTCATGTCCGACACCGGCG
79440565 ATGGTCTCGGGTTCGGGGTGTTACA
390 ATGGTCTCGGGTTCGGGGTGTTACA
79440590 ATTTTATTGG
Statistics
Matches: 409, Mismatches: 5, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
448 19 0.05
449 390 0.95
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (448 bp):
TAGGAGTCATGCCTTACATTACAGATTCAATTTTGACTCTAGTTTCATTAGAAACAAATGGCACC
AGAACTAAAGTCCTGTACAGTGAGATATTCAAGTTGTAACGCGCGAAGGTCAGAGCAGTCGATCC
CTGTAACATGGGCGACTTTAACTAATAAACTGTACCATTTGGCCTGACCAAAAATTCTAGAAATA
AATCCATGGATGGATATATGAGTCTAAATTCAGGGAAAATTTACGAAACCAGTTTCCGAGTTTCG
AAACTCGAGATATGATTTTTAAGGCGACAGTGACGCAGTTTTCCAGCCTGACTGGAAATGTTAAA
TGGTGATGAAGATGGGCAAAACAAGTGAACTTGGCTTGTTAACCCCTCATGTCCGACACCGGCGA
TGGTCTCGGGTTCGGGGTGTTACATAACGTCTCTGTGACAGCCCTAATTTGACCCTAG
Found at i:79446480 original size:40 final size:40
Alignment explanation
Indices: 79446396--79446545 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
79446386 AATTGAATGA
** * *
79446396 TATCCGGGCTAAG-CCCGAAGATAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
79446435 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
79446476 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
79446515 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
79446546 ACATGGTTAT
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
38 3 0.03
39 17 0.19
40 67 0.74
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:79446559 original size:40 final size:40
Alignment explanation
Indices: 79446432--79446561 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
79446422 ATGCTGGAAA
* * * *
79446432 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
79446472 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
79446512 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
79446552 TTATATCCGG
1 TTATATCCGG
79446562 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:79450328 original size:22 final size:22
Alignment explanation
Indices: 79450303--79450349 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
79450293 CATGGGACTT
79450303 GATTTATATCTGTATATTAATA
1 GATTTATATCTGTATATTAATA
79450325 GATTTATATCTGTATATTAATA
1 GATTTATATCTGTATATTAATA
79450347 GAT
1 GAT
79450350 AATGCTCGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.11, T:0.49
Consensus pattern (22 bp):
GATTTATATCTGTATATTAATA
Found at i:79464243 original size:48 final size:48
Alignment explanation
Indices: 79464089--79464265 Score: 183
Period size: 48 Copynumber: 3.6 Consensus size: 48
79464079 CAAAAGGGTA
* * *
79464089 AGATGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAT
1 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
* ** * * * * *
79464137 ATCGGTGTTGATACCATGTTCCAAACATGGTCTTACACTAGCCCACATGT
1 A--GATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
* * * *
79464187 TGAGGCCGATGCCTTGTCCCAGACATGGTCTTACACTAGCTCTCATAT
1 AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
* *
79464235 AAATGCCGATGCCATGTTCCAAACATGGTCT
1 AGATGCCGATGCCATGTCCCAAACATGGTCT
79464266 CTCACTGGCT
Statistics
Matches: 100, Mismatches: 27, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
48 62 0.62
50 38 0.38
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (48 bp):
AGATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAT
Found at i:79464291 original size:48 final size:48
Alignment explanation
Indices: 79464095--79464291 Score: 173
Period size: 48 Copynumber: 4.1 Consensus size: 48
79464085 GGTAAGATGT
* * * * *
79464095 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCG-GTGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATA--GAG-GC
* * * * *
79464145 TGATACCATGTTCCAAACATGGTCTTACACTAGCCCACATGTTGAGGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAGAGGC
* * * * * *
79464193 CGATGCCTTGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAGAGGC
* * *
79464241 CGATGCCATGTTCCAAACATGGTCTCT-CACTGGCTCACCTATCGAGGC
1 CGATGCCATGTTCCAAACATGGTCT-TACACTAGCTCACATATAGAGGC
79464289 CGA
1 CGA
79464292 CGCTGTAACA
Statistics
Matches: 115, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
48 79 0.69
49 2 0.02
50 34 0.30
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATAGAGGC
Found at i:79473378 original size:20 final size:20
Alignment explanation
Indices: 79473353--79473431 Score: 59
Period size: 20 Copynumber: 3.5 Consensus size: 20
79473343 ATAAGTGAAC
79473353 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
* **
79473373 TCGGACGCCTAGTTACATCTAACGAAC
1 TCGGAC-TC-A---AC-TC-AACGAGT
79473400 TCGGACTCAACTCAACGAGT
1 TCGGACTCAACTCAACGAGT
79473420 TCGGAACTCAAC
1 TCGG-ACTCAAC
79473432 CATCCTACTG
Statistics
Matches: 45, Mismatches: 6, Indels: 15
0.68 0.09 0.23
Matches are distributed among these distances:
20 15 0.33
21 10 0.22
22 3 0.07
25 3 0.07
26 3 0.07
27 11 0.24
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.20
Consensus pattern (20 bp):
TCGGACTCAACTCAACGAGT
Found at i:79478483 original size:40 final size:39
Alignment explanation
Indices: 79478323--79478516 Score: 244
Period size: 39 Copynumber: 4.9 Consensus size: 39
79478313 TGTGTATGAA
* *
79478323 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
79478362 TGTGCGAATTGTGATGTCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * *
79478401 TGTGCGAGATATGATATCCGGGCTAAGCCCGAAGGCGAT
1 TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
79478440 TGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
* * * * *
79478480 TGTGCGGGTTATCATAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTGTGATATCCGGGCTAAG-CCCGAAGGC
79478517 GTTTGAACGA
Statistics
Matches: 136, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
39 95 0.70
40 41 0.30
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAGTTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:79478543 original size:79 final size:78
Alignment explanation
Indices: 79478340--79478554 Score: 209
Period size: 79 Copynumber: 2.7 Consensus size: 78
79478330 ATTGTGATAT
* * ** * * * *
79478340 CCGGGCTAAGCCCGAAGGCAAATGTGCGAATTGTGATGTCCGGGCTAAGCCCGAAGGCAATTGTG
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
* *
79478405 CGAGATATGATAT
66 CGAGATATCATAA
** * *
79478418 CCGGGCTAAGCCCGAAGGCGATTGTGCGAGTTGTGATATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAG-CCCGAAGGCAATTGT
* *
79478483 GCGGGTTATCATAA
65 GCGAGATATCATAA
* * *
79478497 CCGGGCTATGTCCCGAAGGCGTTTGAACGAGTAGCT-ATATCC-GGTTAAACTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCGATTGAACGAGTAG-TGATATCCGGGTTAAGC-CCGAAGG
79478555 TATGTGATAT
Statistics
Matches: 117, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
78 45 0.38
79 46 0.39
80 25 0.21
81 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.32, T:0.23
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCGATTGAACGAGTAGTGATATCCGGGTTAAGCCCGAAGGCAATTGTG
CGAGATATCATAA
Found at i:79487590 original size:71 final size:71
Alignment explanation
Indices: 79487504--79487738 Score: 470
Period size: 71 Copynumber: 3.3 Consensus size: 71
79487494 CGATTTGTCT
79487504 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79487569 CTTTCA
66 CTTTCA
79487575 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79487640 CTTTCA
66 CTTTCA
79487646 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
79487711 CTTTCA
66 CTTTCA
79487717 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
79487739 GATACATCAC
Statistics
Matches: 164, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 164 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:79487634 original size:41 final size:41
Alignment explanation
Indices: 79487589--79487706 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
79487579 GCTCTCTTGT
79487589 CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
1 CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
* * * * *
79487630 CTACAT-TTATCTTTCAC---G--T-A-GC-T-C--TCTTG
1 CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
79487659 TCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
1 -CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
79487701 CTACAT
1 CTACAT
79487707 TTATCTTTCA
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 3 0.06
30 6 0.11
31 9 0.17
32 1 0.02
33 2 0.04
34 2 0.04
35 1 0.02
36 1 0.02
37 2 0.04
38 2 0.04
39 1 0.02
40 9 0.17
41 12 0.22
42 3 0.06
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (41 bp):
CTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAG
Found at i:79487776 original size:71 final size:69
Alignment explanation
Indices: 79487504--79487772 Score: 416
Period size: 71 Copynumber: 3.8 Consensus size: 69
79487494 CGATTTGTCT
79487504 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCAC-T-GAATCACGCATGCGACCTAGCTACATTTAT
79487569 CTTTCA
64 CTTTCA
79487575 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCAC-T-GAATCACGCATGCGACCTAGCTACATTTAT
79487640 CTTTCA
64 CTTTCA
79487646 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCAC-T-GAATCACGCATGCGACCTAGCTACATTTAT
79487711 CTTTCA
64 CTTTCA
* * * * *
79487717 CGTAGCTCTCTTGTCTACATGG-GATACATCAC-GTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TCCTTCACTGAATCACGCATGCGACCTAGCTAC
79487773 TACAGGGTGT
Statistics
Matches: 192, Mismatches: 5, Indels: 5
0.95 0.02 0.02
Matches are distributed among these distances:
68 21 0.11
70 1 0.01
71 170 0.89
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (69 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTGAATCACGCATGCGACCTAGCTACATTTATCT
TTCA
Found at i:79490031 original size:50 final size:49
Alignment explanation
Indices: 79489913--79490042 Score: 170
Period size: 50 Copynumber: 2.6 Consensus size: 49
79489903 CTGGTACGCA
* **
79489913 TAGTAGCCTGCACTTAGTACTACACATGTGACCAACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCAATACACG
* * * * *
79489962 TAGTAACCTGCACTTAGTACTACGCACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AACAATCCAATACACG
*
79490012 TAGTAGCCTACACTTAGTACTACACACGTGA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA
79490043 TCACAGTTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
49 30 0.43
50 39 0.57
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCAATACACG
Found at i:79502681 original size:18 final size:18
Alignment explanation
Indices: 79502658--79502694 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
79502648 ATCGATTTTA
79502658 TGCCTGAAATTTTATGCC
1 TGCCTGAAATTTTATGCC
79502676 TGCCTGAAATTTTATGCC
1 TGCCTGAAATTTTATGCC
79502694 T
1 T
79502695 TTCTTTGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.41
Consensus pattern (18 bp):
TGCCTGAAATTTTATGCC
Found at i:79512605 original size:40 final size:39
Alignment explanation
Indices: 79512561--79512689 Score: 120
Period size: 40 Copynumber: 3.3 Consensus size: 39
79512551 CGGAACATAA
79512561 CCGGATATAACCATGTGCACAAATGCCTTTC-GGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCC-TTCGGGTCTTAGC
* * * *
79512601 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * *
79512641 CCGGAT-TAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
79512680 CCGGATATAA
1 CCGGATATAA
79512690 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 12, Indels: 12
0.75 0.13 0.13
Matches are distributed among these distances:
37 1 0.01
39 32 0.45
40 36 0.51
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79518010 original size:40 final size:40
Alignment explanation
Indices: 79517944--79518094 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
79517934 AAATTGAATG
* * *
79517944 ATATCCGGGCTAA-TCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
79517983 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
79518023 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
79518063 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
79518095 ACATGGTTAT
Statistics
Matches: 89, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
39 15 0.17
40 72 0.81
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:79518108 original size:40 final size:40
Alignment explanation
Indices: 79517981--79518110 Score: 138
Period size: 40 Copynumber: 3.2 Consensus size: 40
79517971 ATGCTGGAAA
* * * *
79517981 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
* * * **
79518021 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGA-CA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
*
79518061 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACATGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-ATGG
79518101 TTATATCCGG
1 TTATATCCGG
79518111 TTATATTCCG
Statistics
Matches: 71, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATGG
Found at i:79525978 original size:40 final size:40
Alignment explanation
Indices: 79525912--79526062 Score: 155
Period size: 40 Copynumber: 3.8 Consensus size: 40
79525902 AAATTGAATG
* *
79525912 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* * ****
79525951 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
* *
79525991 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GAAATT
* *
79526031 CTATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
79526063 ACATGGTTAT
Statistics
Matches: 90, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
39 16 0.18
40 72 0.80
41 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGAAATT
Found at i:79526046 original size:80 final size:79
Alignment explanation
Indices: 79525914--79526062 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 79
79525904 ATTGAATGAT
*
79525914 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAATT
1 ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
79525979 GTGCTAGTGGCTAC
66 GTGCTAGTGGCTAC
* * * *
79525993 ATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGGCA
*
79526056 TTTGTGC
63 ATTGTGC
79526063 ACATGGTTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
79 16 0.26
80 45 0.74
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (79 bp):
ATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCTAGTGGCTAC
Found at i:79526077 original size:80 final size:79
Alignment explanation
Indices: 79525912--79526078 Score: 196
Period size: 80 Copynumber: 2.1 Consensus size: 79
79525902 AAATTGAATG
*
79525912 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCAA
1 ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
*
79525977 TTGTGCTAGTGGCT
66 TTGTGCTAATGGCT
* * * * *
79525991 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAG-CCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
79526054 CATTTGTGC-ACATGGTT
63 CAATTGTGCTA-ATGGCT
79526071 ATATCCGG
1 ATATCCGG
79526079 TTATATTCCG
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 18 0.24
80 56 0.76
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (79 bp):
ATATCCGGGCTAAGCCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCAA
TTGTGCTAATGGCT
Found at i:79531184 original size:40 final size:40
Alignment explanation
Indices: 79531128--79531295 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
79531118 CAATTGAATG
* *
79531128 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTG-CTT
*
79531169 -TATCCGGGTTAAGACCCGAAGGC-ATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAG-TGCTT
* * *
79531208 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGT-CGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGC-TT
** *
79531248 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTGCTT
79531288 ATATCCGG
1 ATATCCGG
79531296 TTGTATCCGA
Statistics
Matches: 110, Mismatches: 9, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
39 8 0.07
40 98 0.89
41 4 0.04
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGCTT
Found at i:79531262 original size:80 final size:79
Alignment explanation
Indices: 79531128--79531295 Score: 230
Period size: 80 Copynumber: 2.1 Consensus size: 79
79531118 CAATTGAATG
* * *
79531128 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGACTTTATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGA-TTTATCCGGGCTAAGACCCGAAGGCA
*
79531193 TTCGTGCAAGTTGTT
65 TTCGTGCAAGTGGTT
* *
79531208 ATATCCGGGCTAATACCCGAAGGCATTTGTGCGAGTCG-TTATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGT-GATT-TATCCGGGCTAAGACCCGAAGGC
**
79531272 ATTCGTGCGTGTGGTT
64 ATTCGTGCAAGTGGTT
79531288 ATATCCGG
1 ATATCCGG
79531296 TTGTATCCGA
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 2 0.03
80 75 0.96
81 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTTATCCGGGCTAAGACCCGAAGGCAT
TCGTGCAAGTGGTT
Found at i:79533606 original size:36 final size:36
Alignment explanation
Indices: 79533560--79533631 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
79533550 GTGTGTAATA
79533560 AAAATTGTTAGGGACATTCCACTGTAGCTAATGACT
1 AAAATTGTTAGGGACATTCCACTGTAGCTAATGACT
79533596 AAAATTGTTAGGGACATTCCACTGTAGCTAATGACT
1 AAAATTGTTAGGGACATTCCACTGTAGCTAATGACT
79533632 GAGTAGCTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (36 bp):
AAAATTGTTAGGGACATTCCACTGTAGCTAATGACT
Found at i:79535168 original size:10 final size:10
Alignment explanation
Indices: 79535150--79535201 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
79535140 ATTATTAACA
*
79535150 TAATGAATTT
1 TAATTAATTT
79535160 TAATTAATTTT
1 TAATTAA-TTT
79535171 ATAATTAATTT
1 -TAATTAATTT
*
79535182 TGATTAATTT
1 TAATTAATTT
*
79535192 TGATT-ATTT
1 TAATTAATTT
79535201 T
1 T
79535202 CGACAGATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
9 5 0.13
10 20 0.53
11 6 0.16
12 7 0.18
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.60
Consensus pattern (10 bp):
TAATTAATTT
Found at i:79535174 original size:22 final size:22
Alignment explanation
Indices: 79535149--79535192 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
79535139 AATTATTAAC
79535149 ATAATGAATTTTAATTAATTTT
1 ATAATGAATTTTAATTAATTTT
* *
79535171 ATAATTAATTTTGATTAATTTT
1 ATAATGAATTTTAATTAATTTT
79535193 GATTATTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTTT
Found at i:79538948 original size:41 final size:43
Alignment explanation
Indices: 79538845--79538948 Score: 131
Period size: 43 Copynumber: 2.5 Consensus size: 43
79538835 TCGATGTGTG
* *
79538845 ATTTGTGTAAGATCATGTCTAGGACATTGGCATCGAAGTGAGA
1 ATTTGTGTAAGACCATGTCTAGAACATTGGCATCGAAGTGAGA
** * *
79538888 AAATGTGTAAGACCATGTCTAGAACATTGGCATCGTA-T-ATA
1 ATTTGTGTAAGACCATGTCTAGAACATTGGCATCGAAGTGAGA
*
79538929 ATTTGTGTAAGACCCTGTCT
1 ATTTGTGTAAGACCATGTCT
79538949 GGGTCAATGG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 19 0.37
42 1 0.02
43 32 0.62
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (43 bp):
ATTTGTGTAAGACCATGTCTAGAACATTGGCATCGAAGTGAGA
Found at i:79538960 original size:41 final size:40
Alignment explanation
Indices: 79538845--79538967 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 40
79538835 TCGATGTGTG
* * * *
79538845 ATTTGTGTAAGATCATGTCTAGGACATTGGCATCGAAGTGAGA
1 ATTTGTGTAAGACCATGTCTAGAACAATGGCATCG-A-T-ATA
** *
79538888 AAATGTGTAAGACCATGTCTAGAACATTGGCATCGTATATA
1 ATTTGTGTAAGACCATGTCTAGAACAATGGCATCG-ATATA
* * **
79538929 ATTTGTGTAAGACCCTGTCTGGGTCAATGGCATCGATAT
1 ATTTGTGTAAGACCATGTCTAGAACAATGGCATCGATAT
79538968 GTGATAACAT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
40 4 0.06
41 30 0.45
42 1 0.01
43 32 0.48
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (40 bp):
ATTTGTGTAAGACCATGTCTAGAACAATGGCATCGATATA
Found at i:79540201 original size:24 final size:24
Alignment explanation
Indices: 79540153--79540344 Score: 248
Period size: 24 Copynumber: 8.0 Consensus size: 24
79540143 GCTTTATCAT
*
79540153 ATAACTGGAGGCCT-AGCCTCTTTT-
1 ATAACTGG-GGCATAAGCC-CTTTTG
* *
79540177 AGTAACTGGGGCCAAAAGCCC-TTTA
1 A-TAACTGGGG-CATAAGCCCTTTTG
* **
79540202 ATAACTGAGGTGTAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
79540226 ATCACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTG
79540249 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79540273 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79540297 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79540321 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
79540345 CACTTCCTCC
Statistics
Matches: 148, Mismatches: 14, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
23 27 0.18
24 107 0.72
25 10 0.07
26 4 0.03
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:79540417 original size:20 final size:20
Alignment explanation
Indices: 79540389--79540438 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
79540379 GCATTTATAA
*
79540389 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79540409 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79540429 ACATATCATG
1 ACATATCATG
79540439 CATTGAGTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79548498 original size:24 final size:24
Alignment explanation
Indices: 79548469--79548641 Score: 260
Period size: 24 Copynumber: 7.2 Consensus size: 24
79548459 GGCCTTGCCT
* * *
79548469 CTTTTAATAACTGAGGCCAAAAGCC
1 CTTTTGATAACTG-GGGCATAAGCC
* *
79548494 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
*
79548517 CTTTTGATCACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
*
79548541 C-TTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
79548564 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
79548588 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
79548612 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCC
79548636 CTTTTG
1 CTTTTG
79548642 CACTTCCTCC
Statistics
Matches: 137, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
23 30 0.22
24 106 0.77
25 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (24 bp):
CTTTTGATAACTGGGGCATAAGCC
Found at i:79548641 original size:48 final size:47
Alignment explanation
Indices: 79548469--79548639 Score: 270
Period size: 47 Copynumber: 3.6 Consensus size: 47
79548459 GGCCTTGCCT
* * * *
79548469 CTTTTAATAACTGAGGCCAAAAGCCCTTTAATAACTGGGGCGTAAGCC
1 CTTTTGATAACTG-GGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
79548517 CTTTTGATCACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
*
79548564 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCC
1 CTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAAGCC
79548612 CTTTTGATAACTGGGGCATAAGCCCTTT
1 CTTTTGATAACTGGGGCATAAGCCCTTT
79548640 TGCACTTCCT
Statistics
Matches: 115, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
47 58 0.50
48 57 0.50
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (47 bp):
CTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCC
Found at i:79548712 original size:9 final size:9
Alignment explanation
Indices: 79548698--79548754 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
79548688 ATCTCATGTG
79548698 CATATCATA
1 CATATCATA
*
79548707 CATATCATGTG
1 CATATCA--TA
79548718 CATATCATA
1 CATATCATA
*
79548727 CATATCATGTG
1 CATATCA--TA
79548738 CATATCATA
1 CATATCATA
79548747 CATATCAT
1 CATATCAT
79548755 GCATTGAGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:79548714 original size:20 final size:20
Alignment explanation
Indices: 79548686--79548755 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
79548676 GAATTTATAA
*
79548686 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79548706 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79548726 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79548746 ACATATCATG
1 ACATATCATG
79548756 CATTGAGTTC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79548721 original size:11 final size:11
Alignment explanation
Indices: 79548691--79548745 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
79548681 TATAAACATC
79548691 TCATGTGCATA
1 TCATGTGCATA
*
79548702 TCA--TACATA
1 TCATGTGCATA
79548711 TCATGTGCATA
1 TCATGTGCATA
*
79548722 TCA--TACATA
1 TCATGTGCATA
79548731 TCATGTGCATA
1 TCATGTGCATA
79548742 TCAT
1 TCAT
79548746 ACATATCATG
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 16 0.44
11 20 0.56
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79560179 original size:68 final size:68
Alignment explanation
Indices: 79559983--79560201 Score: 269
Period size: 68 Copynumber: 3.2 Consensus size: 68
79559973 GAGGTGTTAC
** * * * *
79559983 ACATCATAAAGAGCCTGCCAGTACATTAAACATGGGGTTACAAAGTGTGAGACCATAGCTT-GAC
1 ACATCATAAAGAGTTTGCCAGGACATTAAACATAGGGTTACAATGTGTAAGACCATAGCTTAG-C
79560047 TATG
65 TATG
* ** * * *
79560051 GCATCATAAAGAGTTTGTTAAGGATATTAAACATAGGGTTACAATGTGTAAGCCCGTAGCTTAGC
1 ACATCATAAAGAGTTTG-CCAGGACATTAAACATAGGGTTACAATGTGTAAGACCATAGCTTAGC
79560116 TATG
65 TATG
* * *
79560120 ACATCATAAAGAGTTTGCCAGGACATTAAACATTGGGTTACAATGTGTAAGACCATAGCTCAACT
1 ACATCATAAAGAGTTTGCCAGGACATTAAACATAGGGTTACAATGTGTAAGACCATAGCTTAGCT
79560185 ATG
66 ATG
*
79560188 ACATTATAAAGAGT
1 ACATCATAAAGAGT
79560202 CTGCTAGAAC
Statistics
Matches: 127, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
68 70 0.55
69 56 0.44
70 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (68 bp):
ACATCATAAAGAGTTTGCCAGGACATTAAACATAGGGTTACAATGTGTAAGACCATAGCTTAGCT
ATG
Found at i:79560968 original size:31 final size:31
Alignment explanation
Indices: 79560925--79560988 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
79560915 CCTTTTCATA
79560925 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
79560956 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
79560987 TT
1 TT
79560989 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Done.