Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 255 of 325
Found at i:79889730 original size:25 final size:25
Alignment explanation
Indices: 79889702--79889753 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
79889692 ATTTTTATAT
*
79889702 TTATTAAAATATT-TTAACAATAATC
1 TTATTAAAAT-TTAATAACAATAATC
*
79889727 TTATTAAAATTTAATAAGAATAATC
1 TTATTAAAATTTAATAACAATAATC
79889752 TT
1 TT
79889754 CTATTTACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 22 0.92
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (25 bp):
TTATTAAAATTTAATAACAATAATC
Found at i:79891343 original size:22 final size:22
Alignment explanation
Indices: 79891318--79891364 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
79891308 TAATGTCAGT
79891318 TTTTAATAATAGAAATGGAT-AA
1 TTTTAATAATAGAAAT-GATGAA
**
79891340 TTTTTTTAATAGAAATGATGAA
1 TTTTAATAATAGAAATGATGAA
79891362 TTT
1 TTT
79891365 ACTCTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 19 0.86
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.45
Consensus pattern (22 bp):
TTTTAATAATAGAAATGATGAA
Found at i:79891676 original size:28 final size:29
Alignment explanation
Indices: 79891623--79891677 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
79891613 ATAAAAGATT
*
79891623 AACATAACTTTTTATTAAATTATAAATTA
1 AACATAACTTTTTATAAAATTATAAATTA
*
79891652 AACATAA-TTTTT-TAAAACTTTTAAAT
1 AACATAACTTTTTATAAAA-TTATAAAT
79891678 AGAAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 4 0.17
28 12 0.52
29 7 0.30
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.45
Consensus pattern (29 bp):
AACATAACTTTTTATAAAATTATAAATTA
Found at i:79891777 original size:28 final size:28
Alignment explanation
Indices: 79891737--79891792 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
79891727 TAATGCATAG
79891737 TTAAAAAGTTTAAAGTTATGATTATAAT
1 TTAAAAAGTTTAAAGTTATGATTATAAT
79891765 TTAAAAAGTTTAAAGTTATGATTATAAT
1 TTAAAAAGTTTAAAGTTATGATTATAAT
79891793 GAAACTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (28 bp):
TTAAAAAGTTTAAAGTTATGATTATAAT
Found at i:79895747 original size:67 final size:67
Alignment explanation
Indices: 79895639--79895771 Score: 239
Period size: 67 Copynumber: 2.0 Consensus size: 67
79895629 ATATCTTACC
*
79895639 TATCTACTATCAAGTAAAATTACATCAACAAATCCAATTAGAATTCTGATAGTTTACTTATAAAT
1 TATCTACTATCAAGTAAAACTACATCAACAAATCCAATTAGAATTCTGATAGTTTACTTATAAAT
79895704 AT
66 AT
* *
79895706 TATCTACTATCAAGTAAAACTCCATCAACGAATCCAATTAGAATTCTGATAGTTTACTTATAAAT
1 TATCTACTATCAAGTAAAACTACATCAACAAATCCAATTAGAATTCTGATAGTTTACTTATAAAT
79895771 A
66 A
79895772 ACCATCCATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.35
Consensus pattern (67 bp):
TATCTACTATCAAGTAAAACTACATCAACAAATCCAATTAGAATTCTGATAGTTTACTTATAAAT
AT
Found at i:79897847 original size:34 final size:34
Alignment explanation
Indices: 79897791--79897855 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
79897781 ACGATCATTT
** *
79897791 ACGATACTATTTGCATATACGGTATTGTTCATCC
1 ACGATACTATTCACATATACGGTACTGTTCATCC
79897825 ACGATACTATTCACAT-TGACGGTACTGTTCA
1 ACGATACTATTCACATAT-ACGGTACTGTTCA
79897856 CATATACAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 1 0.04
34 26 0.96
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (34 bp):
ACGATACTATTCACATATACGGTACTGTTCATCC
Found at i:79898859 original size:46 final size:47
Alignment explanation
Indices: 79898799--79899027 Score: 324
Period size: 46 Copynumber: 5.0 Consensus size: 47
79898789 TTTGACATGA
* * * * ** *
79898799 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-CGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*** *
79898845 TGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
79898891 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
79898937 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
79898983 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCAGG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGG
79899028 AGCACACTCC
Statistics
Matches: 169, Mismatches: 12, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
45 4 0.02
46 162 0.96
47 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:79901172 original size:11 final size:11
Alignment explanation
Indices: 79901156--79901207 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
79901146 TATACTAAAT
79901156 AAATAATAATA
1 AAATAATAATA
*
79901167 AAATAAT-ATT
1 AAATAATAATA
* *
79901177 AAATATCTCATA
1 AAATA-ATAATA
*
79901189 AAATATTAATA
1 AAATAATAATA
79901200 AAATAATA
1 AAATAATA
79901208 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:79906295 original size:41 final size:41
Alignment explanation
Indices: 79906212--79906296 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
79906202 CTTTCCTTAG
* *
79906212 CTATAAATTAATTATGAAAACAACTCAAGAATTAATCCTTA
1 CTATAAATTAATTATCAAAACAACTCAAGAATTAATCATTA
**
79906253 CTATAAATTAATTA-CAAGAACAACAT-AATCATTAATCATTA
1 CTATAAATTAATTATCAA-AACAAC-TCAAGAATTAATCATTA
79906294 CTA
1 CTA
79906297 GTTAAACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
40 2 0.05
41 35 0.92
42 1 0.03
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.32
Consensus pattern (41 bp):
CTATAAATTAATTATCAAAACAACTCAAGAATTAATCATTA
Found at i:79907813 original size:18 final size:18
Alignment explanation
Indices: 79907792--79907830 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
79907782 TTTAACTTTT
* *
79907792 TTTATTATATTTTTAGAA
1 TTTATTAAAATTTTAGAA
*
79907810 TTTATTAAAATTTTATAA
1 TTTATTAAAATTTTAGAA
79907828 TTT
1 TTT
79907831 TTTTAACAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (18 bp):
TTTATTAAAATTTTAGAA
Found at i:79907915 original size:20 final size:20
Alignment explanation
Indices: 79907861--79907909 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
79907851 AATTTTTATT
*
79907861 AATATTTT-GAATTTTAAAA
1 AATATTTTAAAATTTTAAAA
*
79907880 AATATTTTAAAATTTTGAAA
1 AATATTTTAAAATTTTAAAA
79907900 AATATTTTAA
1 AATATTTTAA
79907910 TTTTTTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 8 0.30
20 19 0.70
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (20 bp):
AATATTTTAAAATTTTAAAA
Found at i:79911014 original size:110 final size:110
Alignment explanation
Indices: 79910821--79911040 Score: 404
Period size: 110 Copynumber: 2.0 Consensus size: 110
79910811 TGGTTTTTGT
*
79910821 AGTTTTAATTTCTGATCTGGCATTTTAATGTAGATCACTGTGTTTATTTCCACCATTTTAATGGT
1 AGTTTTAATTTCTGATCTGGAATTTTAATGTAGATCACTGTGTTTATTTCCACCATTTTAATGGT
79910886 TTGATCAAATTTGAGGCATTTTTCTAGGAGGAAGCTTATACAGAA
66 TTGATCAAATTTGAGGCATTTTTCTAGGAGGAAGCTTATACAGAA
*
79910931 AGTTTTAATTTCTGATTTGGAATTTTAATGTAGATCACTGTGTTTATTTCCACCATTTTAATGGT
1 AGTTTTAATTTCTGATCTGGAATTTTAATGTAGATCACTGTGTTTATTTCCACCATTTTAATGGT
* *
79910996 TTGATCGAATTTGAGGCATTTTTCTAGGAGGAAGCTTATATAGAA
66 TTGATCAAATTTGAGGCATTTTTCTAGGAGGAAGCTTATACAGAA
79911041 TTTTTGCGCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 106 1.00
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (110 bp):
AGTTTTAATTTCTGATCTGGAATTTTAATGTAGATCACTGTGTTTATTTCCACCATTTTAATGGT
TTGATCAAATTTGAGGCATTTTTCTAGGAGGAAGCTTATACAGAA
Found at i:79912793 original size:21 final size:22
Alignment explanation
Indices: 79912764--79912811 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
79912754 TATATATGGA
*
79912764 ACATGGATTTATAATT-GTAGT
1 ACATAGATTTATAATTGGTAGT
*
79912785 ACATAGATTTATCATTGGTAGT
1 ACATAGATTTATAATTGGTAGT
*
79912807 GCATA
1 ACATA
79912812 TAGCGGATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (22 bp):
ACATAGATTTATAATTGGTAGT
Found at i:79920070 original size:31 final size:31
Alignment explanation
Indices: 79920035--79920096 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
79920025 TTCAACACAC
79920035 AAATCATGAATTACATTACCTTATTTAACAA
1 AAATCATGAATTACATTACCTTATTTAACAA
*
79920066 AAATCATGAATTGCATTACCTTATTTAACAA
1 AAATCATGAATTACATTACCTTATTTAACAA
79920097 TATACTAAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (31 bp):
AAATCATGAATTACATTACCTTATTTAACAA
Found at i:79924645 original size:26 final size:25
Alignment explanation
Indices: 79924609--79924698 Score: 105
Period size: 24 Copynumber: 3.7 Consensus size: 25
79924599 GGACTCACCG
*
79924609 CAGCTCATAAGAGCTTACTGATATAT
1 CAGCTCGTAAGAGCTTACTGAT-TAT
*
79924635 CAGCTCGTAAGAGCTTACTG-TTCT
1 CAGCTCGTAAGAGCTTACTGATTAT
*
79924659 CAGCTCGTATGAGCTTACTGATT-T
1 CAGCTCGTAAGAGCTTACTGATTAT
**
79924683 -AGCTCGTCTGAGCTTA
1 CAGCTCGTAAGAGCTTA
79924699 TCGTTTAAGC
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
23 15 0.25
24 22 0.37
25 3 0.05
26 19 0.32
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (25 bp):
CAGCTCGTAAGAGCTTACTGATTAT
Found at i:79924910 original size:20 final size:20
Alignment explanation
Indices: 79924867--79924910 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
79924857 CATAAATTCT
*
79924867 GTTTATATGGATGAAGTACT
1 GTTTATATGGATGAAGTACG
79924887 GTTTATATGGATG-AGTTACG
1 GTTTATATGGATGAAG-TACG
79924907 GTTT
1 GTTT
79924911 TCAAATGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.25, C:0.05, G:0.27, T:0.43
Consensus pattern (20 bp):
GTTTATATGGATGAAGTACG
Found at i:79930082 original size:12 final size:12
Alignment explanation
Indices: 79930065--79930089 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79930055 ATAACACTAT
79930065 ACAAAGTACCTA
1 ACAAAGTACCTA
79930077 ACAAAGTACCTA
1 ACAAAGTACCTA
79930089 A
1 A
79930090 TAAATATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.24, G:0.08, T:0.16
Consensus pattern (12 bp):
ACAAAGTACCTA
Found at i:79930657 original size:43 final size:43
Alignment explanation
Indices: 79930608--79930943 Score: 404
Period size: 43 Copynumber: 7.8 Consensus size: 43
79930598 TTTGAGAAAG
* * *
79930608 CGCCGCTAAAGAACGTGACCTTTAGTGACGCTTTTTACACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
* * * *
79930651 CGCCGCTAAAGAATGTGACCTTTAGCGGCACTTTTCAGACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
* * *
79930694 TGCCGCTAAAGAACGTGACATTTAGTGGCGCTTTTCATTCAAA
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
* * * * *
79930737 TGCCGCTATAGAACGTGACCTATAGCGGCGCTTTTC-TCAAAAA
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCAT-ACAAA
* *
79930780 TGCCGCTACAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
* * * *
79930823 CACCGCTAAAGAATGTGACCTTTAGTGGCGCCTTGCATACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
* * *
79930866 TGCCGTTAAAGAACGTGACCTTTAGCGGCGCTTTTCATACAAA
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
* * **
79930909 CACCGCTAAAGAACATGACCTTTAGCAGCGCTTTT
1 CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTT
79930944 ATTAAAAACA
Statistics
Matches: 250, Mismatches: 41, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
42 1 0.00
43 248 0.99
44 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
CGCCGCTAAAGAACGTGACCTTTAGTGGCGCTTTTCATACAAA
Found at i:79930718 original size:86 final size:86
Alignment explanation
Indices: 79930563--79930943 Score: 451
Period size: 86 Copynumber: 4.4 Consensus size: 86
79930553 TTATGTAAAA
** ** * **
79930563 AAACACCGCTAAAGAACT-TGATTTTTAGCGGCATTTTTGAGA-AAGCGCCGCTAAAGAACGTGA
1 AAACACCGCTAAAGAA-TGTGACCTTTAGCGGCGCTTTTCAGACAAATGCCGCTAAAGAACGTGA
* * *
79930626 CCTTTAGTGACGCTTTTTACAC
65 CCTTTAGTGGCGCTTTTCATAC
* *
79930648 AAACGCCGCTAAAGAATGTGACCTTTAGCGGCACTTTTCAGACAAATGCCGCTAAAGAACGTGAC
1 AAACACCGCTAAAGAATGTGACCTTTAGCGGCGCTTTTCAGACAAATGCCGCTAAAGAACGTGAC
* *
79930713 ATTTAGTGGCGCTTTTCATTC
66 CTTTAGTGGCGCTTTTCATAC
** * * * ** * *
79930734 AAATGCCGCTATAGAACGTGACCTATAGCGGCGCTTTTCTCAAAAATGCCGCTACAGAACGTGAC
1 AAACACCGCTAAAGAATGTGACCTTTAGCGGCGCTTTTCAGACAAATGCCGCTAAAGAACGTGAC
79930799 CTTTAGTGGCGCTTTTCATAC
66 CTTTAGTGGCGCTTTTCATAC
* * * * *
79930820 AAACACCGCTAAAGAATGTGACCTTTAGTGGCGCCTTGCATACAAATGCCGTTAAAGAACGTGAC
1 AAACACCGCTAAAGAATGTGACCTTTAGCGGCGCTTTTCAGACAAATGCCGCTAAAGAACGTGAC
*
79930885 CTTTAGCGGCGCTTTTCATAC
66 CTTTAGTGGCGCTTTTCATAC
** *
79930906 AAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTTT
1 AAACACCGCTAAAGAATGTGACCTTTAGCGGCGCTTTT
79930944 ATTAAAAACA
Statistics
Matches: 251, Mismatches: 43, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
84 1 0.00
85 35 0.14
86 215 0.86
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (86 bp):
AAACACCGCTAAAGAATGTGACCTTTAGCGGCGCTTTTCAGACAAATGCCGCTAAAGAACGTGAC
CTTTAGTGGCGCTTTTCATAC
Found at i:79930955 original size:43 final size:43
Alignment explanation
Indices: 79930561--79930952 Score: 307
Period size: 43 Copynumber: 9.1 Consensus size: 43
79930551 GTTTATGTAA
* * ** * *
79930561 AAAAACACCGCTAAAGAACTTGATTTTTAGCGGC-ATTTT-TG
1 AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTATT
* * *
79930602 AGAAAGCGCCGCTAAAGAACGTGACCTTTAGTGACGC-TTT-TT
1 A-AAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTATT
* * *
79930644 ACACAAACGCCGCTAAAGAATGTGACCTTTAGCGGCACTTTTCA-G
1 A-A-AAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTT-ATT
* * * *
79930689 ACAAATGCCGCTAAAGAACGTGACATTTAGTGGCGCTTTTCATT
1 AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTT-ATT
* * * * * *
79930733 -CAAATGCCGCTATAGAACGTGACCTATAGCGGCGCTTTTCTC
1 AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTATT
* * *
79930775 AAAAATGCCGCTACAGAACGTGACCTTTAGTGGCGCTTTTCA-T
1 AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTT-ATT
* * * * **
79930818 ACAAACACCGCTAAAGAATGTGACCTTTAGTGGCGCCTTGCA-T
1 AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCG-CTTTTATT
* * *
79930861 ACAAATGCCGTTAAAGAACGTGACCTTTAGCGGCGCTTTTCA-T
1 AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTT-ATT
* * * *
79930904 ACAAACACCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATT
1 AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTATT
79930947 AAAAAC
1 AAAAAC
79930953 ACCACTAACT
Statistics
Matches: 284, Mismatches: 55, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
41 1 0.00
42 37 0.13
43 239 0.84
44 6 0.02
45 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGAACGTGACCTTTAGCGGCGCTTTTATT
Found at i:79931691 original size:13 final size:14
Alignment explanation
Indices: 79931657--79931693 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
79931647 CGATGAATAT
79931657 ACCATTATAATTAA
1 ACCATTATAATTAA
*
79931671 ACCATTATGATTAA
1 ACCATTATAATTAA
79931685 A-CATTATAA
1 ACCATTATAA
79931694 ATATTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.35
Consensus pattern (14 bp):
ACCATTATAATTAA
Found at i:79936807 original size:9 final size:9
Alignment explanation
Indices: 79936778--79936935 Score: 62
Period size: 9 Copynumber: 18.0 Consensus size: 9
79936768 TATGTATTAC
*
79936778 GTAAGTTAA
1 GTAAGTTAT
* *
79936787 GTAAATTTT
1 GTAAGTTAT
79936796 GTAAGTTAT
1 GTAAGTTAT
79936805 GTAAGTTAT
1 GTAAGTTAT
*
79936814 G-ATA-TGAT
1 GTA-AGTTAT
* *
79936822 ATACATTTAT
1 GTA-AGTTAT
*
79936832 GTAAGGTAT
1 GTAAGTTAT
*
79936841 GTATGTTAT
1 GTAAGTTAT
** *
79936850 G-ATCTGAT
1 GTAAGTTAT
* *
79936858 ATATATTTAT
1 GTA-AGTTAT
79936868 GT-A-TTAT
1 GTAAGTTAT
79936875 GTAAGTTAT
1 GTAAGTTAT
* *
79936884 GATATGATAT
1 G-TAAGTTAT
* *
79936894 AT-ATTTAT
1 GTAAGTTAT
79936902 GT-A-TTAT
1 GTAAGTTAT
*
79936909 GTAAGTTTT
1 GTAAGTTAT
79936918 GTAAGTTAT
1 GTAAGTTAT
79936927 GTAAGTTAT
1 GTAAGTTAT
79936936 TACATAATTA
Statistics
Matches: 109, Mismatches: 30, Indels: 20
0.69 0.19 0.13
Matches are distributed among these distances:
7 12 0.11
8 17 0.16
9 65 0.60
10 15 0.14
ACGTcount: A:0.34, C:0.01, G:0.18, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:79936842 original size:36 final size:36
Alignment explanation
Indices: 79936791--79936915 Score: 179
Period size: 34 Copynumber: 3.6 Consensus size: 36
79936781 AGTTAAGTAA
*
79936791 ATTT-TGTAAGTTATGTAAGTTATGATATGATATAC
1 ATTTATGTAAGTTATGTAAGTTATGATATGATATAT
* * *
79936826 ATTTATGTAAGGTATGTATGTTATGATCTGATATAT
1 ATTTATGTAAGTTATGTAAGTTATGATATGATATAT
79936862 ATTTATGT-A-TTATGTAAGTTATGATATGATATAT
1 ATTTATGTAAGTTATGTAAGTTATGATATGATATAT
79936896 ATTTATGT-A-TTATGTAAGTT
1 ATTTATGTAAGTTATGTAAGTT
79936916 TTGTAAGTTA
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
34 42 0.51
35 5 0.06
36 35 0.43
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.49
Consensus pattern (36 bp):
ATTTATGTAAGTTATGTAAGTTATGATATGATATAT
Found at i:79936876 original size:43 final size:40
Alignment explanation
Indices: 79936828--79936927 Score: 104
Period size: 34 Copynumber: 2.5 Consensus size: 40
79936818 TGATATACAT
79936828 TTATGTAAGGTATGTATGTTATGATCTGATATATATTTATGTA
1 TTATGTAAGGT-TGTATGTTATGA--TGATATATATTTATGTA
79936871 TTATGTAA-G-T-TATG--AT-ATGATATATATTTATGTA
1 TTATGTAAGGTTGTATGTTATGATGATATATATTTATGTA
* *
79936905 TTATGTAAGTTTTGTAAGTTATG
1 TTATGTAAG-GTTGTATGTTATG
79936928 TAAGTTATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
34 25 0.52
36 1 0.02
37 3 0.06
38 3 0.06
39 4 0.08
40 3 0.06
42 1 0.02
43 8 0.17
ACGTcount: A:0.31, C:0.01, G:0.18, T:0.50
Consensus pattern (40 bp):
TTATGTAAGGTTGTATGTTATGATGATATATATTTATGTA
Found at i:79937094 original size:14 final size:14
Alignment explanation
Indices: 79937077--79937140 Score: 56
Period size: 15 Copynumber: 4.4 Consensus size: 14
79937067 ACATGGAAAA
*
79937077 AAATTATTTTACTT
1 AAATTATTTTAATT
* *
79937091 AAATAATATTTAAAT
1 AAATTAT-TTTAATT
*
79937106 AAATTATTTTAGTT
1 AAATTATTTTAATT
* *
79937120 AAATAATATTTAAAT
1 AAATTAT-TTTAATT
79937135 AAATTA
1 AAATTA
79937141 ATCCAAATTA
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
14 17 0.45
15 21 0.55
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (14 bp):
AAATTATTTTAATT
Found at i:79937110 original size:29 final size:29
Alignment explanation
Indices: 79937077--79937140 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
79937067 ACATGGAAAA
79937077 AAATTATTTTACTTAAATAATATTTAAAT
1 AAATTATTTTACTTAAATAATATTTAAAT
*
79937106 AAATTATTTTAGTTAAATAATATTTAAAT
1 AAATTATTTTACTTAAATAATATTTAAAT
79937135 AAATTA
1 AAATTA
79937141 ATCCAAATTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (29 bp):
AAATTATTTTACTTAAATAATATTTAAAT
Found at i:79937438 original size:14 final size:14
Alignment explanation
Indices: 79937419--79937449 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
79937409 CTTGTTTTCA
79937419 TATGGTAATGGCAT
1 TATGGTAATGGCAT
79937433 TATGGTAATGGCAT
1 TATGGTAATGGCAT
79937447 TAT
1 TAT
79937450 CGATTAACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.39
Consensus pattern (14 bp):
TATGGTAATGGCAT
Found at i:79937724 original size:24 final size:24
Alignment explanation
Indices: 79937681--79937727 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
79937671 TTAACTTAAA
* *
79937681 TGATAAAACGAATGATAATATTTG
1 TGATAAAACGAACGAGAATATTTG
*
79937705 TGATAAAACGGACGAGAATATTT
1 TGATAAAACGAACGAGAATATTT
79937728 CAATAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.30
Consensus pattern (24 bp):
TGATAAAACGAACGAGAATATTTG
Found at i:79939641 original size:80 final size:80
Alignment explanation
Indices: 79939557--79939705 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
79939547 TATGGTAACC
* * * *
79939557 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
79939621 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
79939637 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
79939702 CCGG
66 CCGG
79939706 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:79939647 original size:40 final size:38
Alignment explanation
Indices: 79939598--79939705 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
79939588 ATCACGATTT
*
79939598 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
79939638 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
79939678 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
79939706 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:79947760 original size:80 final size:80
Alignment explanation
Indices: 79947676--79947824 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
79947666 TATGGTAACC
* * * *
79947676 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
79947740 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
79947756 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
79947821 CCGG
66 CCGG
79947825 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:79947766 original size:40 final size:38
Alignment explanation
Indices: 79947717--79947824 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
79947707 ATCACGATTT
*
79947717 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
79947757 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
79947797 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
79947825 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:79952050 original size:29 final size:29
Alignment explanation
Indices: 79952018--79952195 Score: 118
Period size: 29 Copynumber: 6.1 Consensus size: 29
79952008 AGTTTATAGT
*
79952018 TTTAGGATTTACGATTTTGTATTTAAGGG
1 TTTAGGGTTTACGATTTTGTATTTAAGGG
* *
79952047 TTTAAGGGTTTAC--TGTCTATAGTTT-AGGG
1 TTT-AGGGTTTACGAT-TTTGTA-TTTAAGGG
* *
79952076 TTTTATGGTTTAGGATTTATG-ATTTAA-GG
1 -TTTAGGGTTTACGATTT-TGTATTTAAGGG
*
79952105 TTTAGGGTTTAAGA-TTTGTATTTAAGGG
1 TTTAGGGTTTACGATTTTGTATTTAAGGG
* ** * *
79952133 TTTAAGGGTTTAGTGATTCAG-ATTTAAAGT
1 TTT-AGGGTTTA-CGATTTTGTATTTAAGGG
* * *
79952163 TTTAGGATTTAGGATTTTATATTTAAGGG
1 TTTAGGGTTTACGATTTTGTATTTAAGGG
79952192 TTTA
1 TTTA
79952196 AGAGTTTAGT
Statistics
Matches: 114, Mismatches: 21, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
26 2 0.02
27 8 0.07
28 22 0.19
29 49 0.43
30 29 0.25
31 4 0.04
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (29 bp):
TTTAGGGTTTACGATTTTGTATTTAAGGG
Found at i:79952106 original size:21 final size:21
Alignment explanation
Indices: 79952077--79952121 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
79952067 AGTTTAGGGT
* *
79952077 TTTATGGTTTAGGATTTATGA
1 TTTAAGGTTTAGGATTTAAGA
*
79952098 TTTAAGGTTTAGGGTTTAAGA
1 TTTAAGGTTTAGGATTTAAGA
79952119 TTT
1 TTT
79952122 GTATTTAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (21 bp):
TTTAAGGTTTAGGATTTAAGA
Found at i:79952165 original size:86 final size:88
Alignment explanation
Indices: 79952018--79952195 Score: 224
Period size: 86 Copynumber: 2.0 Consensus size: 88
79952008 AGTTTATAGT
* * **
79952018 TTTAGGATTTACGATTTTGTATTTAAGGGTTTAAGGGTTTACTGTCTATAGTTTAGGGTTTTATG
1 TTTAGGATTTAAGATTTTGTATTTAAGGGTTTAAGGGTTTACTGTCTAGAGTTTAAAGTTTTA-G
79952083 G-TTTAGGA-TTTATGATTTAA-GG
65 GATTTAGGATTTTAT-ATTTAAGGG
* *
79952105 TTTAGGGTTTAAGA-TTTGTATTTAAGGGTTTAAGGGTTTAGTGAT-TCAGA-TTTAAAGTTTTA
1 TTTAGGATTTAAGATTTTGTATTTAAGGGTTTAAGGGTTTACTG-TCT-AGAGTTTAAAGTTTTA
79952167 GGATTTAGGATTTTATATTTAAGGG
64 GGATTTAGGATTTTATATTTAAGGG
79952192 TTTA
1 TTTA
79952196 AGAGTTTAGT
Statistics
Matches: 80, Mismatches: 6, Indels: 10
0.83 0.06 0.10
Matches are distributed among these distances:
85 2 0.03
86 52 0.65
87 26 0.32
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (88 bp):
TTTAGGATTTAAGATTTTGTATTTAAGGGTTTAAGGGTTTACTGTCTAGAGTTTAAAGTTTTAGG
ATTTAGGATTTTATATTTAAGGG
Found at i:79952212 original size:29 final size:30
Alignment explanation
Indices: 79952037--79952240 Score: 160
Period size: 29 Copynumber: 7.0 Consensus size: 30
79952027 TACGATTTTG
* *
79952037 TATTTAAGGGTTTAAGGGTTTACTG-TCTA
1 TATTTAAGGGTTTAAGGGTTTAGTGATTTA
* *
79952066 TAGTTT-AGGGTTTTATGGTTTAG-GATTTA
1 TA-TTTAAGGGTTTAAGGGTTTAGTGATTTA
* *
79952095 TGATTTAA-GGTTT-AGGGTTTA-AGATTTG
1 T-ATTTAAGGGTTTAAGGGTTTAGTGATTTA
*
79952123 TATTTAAGGGTTTAAGGGTTTAGTGATTCA
1 TATTTAAGGGTTTAAGGGTTTAGTGATTTA
* * * *
79952153 GATTTAA-AGTTTTAGGATTTAG-GATTTTA
1 TATTTAAGGGTTTAAGGGTTTAGTGA-TTTA
* *
79952182 TATTTAAGGGTTTAAGAGTTTAGTGA-CTA
1 TATTTAAGGGTTTAAGGGTTTAGTGATTTA
* *
79952211 TAGTTT-AGAGTTTTAGGGTTTAG-GATTTA
1 TA-TTTAAGGGTTTAAGGGTTTAGTGATTTA
79952240 T
1 T
79952241 GGTTTAGTGT
Statistics
Matches: 138, Mismatches: 24, Indels: 26
0.73 0.13 0.14
Matches are distributed among these distances:
27 6 0.04
28 23 0.17
29 78 0.57
30 29 0.21
31 2 0.01
ACGTcount: A:0.26, C:0.02, G:0.25, T:0.47
Consensus pattern (30 bp):
TATTTAAGGGTTTAAGGGTTTAGTGATTTA
Found at i:79952232 original size:7 final size:7
Alignment explanation
Indices: 79952222--79952288 Score: 53
Period size: 7 Copynumber: 9.4 Consensus size: 7
79952212 AGTTTAGAGT
79952222 TTTAGGG
1 TTTAGGG
*
79952229 TTTAGGA
1 TTTAGGG
*
79952236 TTTATGG
1 TTTAGGG
*
79952243 TTTAGTG
1 TTTAGGG
79952250 TTTAGGG
1 TTTAGGG
**
79952257 TTTAAAG
1 TTTAGGG
* *
79952264 TTTATAGA
1 TTTA-GGG
*
79952272 TTTAGGA
1 TTTAGGG
79952279 TTTAGGG
1 TTTAGGG
79952286 TTT
1 TTT
79952289 TATATTTAAG
Statistics
Matches: 47, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
7 42 0.89
8 5 0.11
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.49
Consensus pattern (7 bp):
TTTAGGG
Found at i:79952245 original size:29 final size:29
Alignment explanation
Indices: 79952069--79952288 Score: 143
Period size: 29 Copynumber: 7.6 Consensus size: 29
79952059 CTGTCTATAG
* *
79952069 TTTAGGGTTTTATGGTTTAGGATTTATGA
1 TTTAGAGTTTTAGGGTTTAGGATTTATGA
* * *
79952098 TTTA-AGGTTTAGGGTTTAAGATTTGT-A
1 TTTAGAGTTTTAGGGTTTAGGATTTATGA
* * *
79952125 TTTAAGGGTTTAAGGGTTTAGTGATTCA-GA
1 TTT-AGAGTTTTAGGGTTTAG-GATTTATGA
* *
79952155 TTTAAAGTTTTAGGATTTAGGATTTTAT-A
1 TTTAGAGTTTTAGGGTTTAGGA-TTTATGA
* * * *
79952184 TTTAAGGGTTTAAGAGTTTAGTGA-CTAT-A
1 TTT-AGAGTTTTAGGGTTTAG-GATTTATGA
*
79952213 GTTTAGAGTTTTAGGGTTTAGGATTTATGG
1 -TTTAGAGTTTTAGGGTTTAGGATTTATGA
* *
79952243 TTTAGTG-TTTAGGGTTTA-AAGTTTATAGA
1 TTTAGAGTTTTAGGGTTTAGGA-TTTAT-GA
*
79952272 TTTAG-GATTTAGGGTTT
1 TTTAGAGTTTTAGGGTTT
79952289 TATATTTAAG
Statistics
Matches: 147, Mismatches: 30, Indels: 28
0.72 0.15 0.14
Matches are distributed among these distances:
27 5 0.03
28 39 0.27
29 78 0.53
30 23 0.16
31 2 0.01
ACGTcount: A:0.25, C:0.01, G:0.26, T:0.47
Consensus pattern (29 bp):
TTTAGAGTTTTAGGGTTTAGGATTTATGA
Found at i:79952252 original size:21 final size:21
Alignment explanation
Indices: 79952222--79952288 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
79952212 AGTTTAGAGT
* *
79952222 TTTAGGGTTTAGGATTTATGG
1 TTTAGTGTTTAGGATTTAAGG
* *
79952243 TTTAGTGTTTAGGGTTTAAAG
1 TTTAGTGTTTAGGATTTAAGG
*
79952264 TTTA-TAGATTTAGGATTTAGGG
1 TTTAGT-G-TTTAGGATTTAAGG
79952286 TTT
1 TTT
79952289 TATATTTAAG
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 1 0.03
21 22 0.59
22 14 0.38
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.49
Consensus pattern (21 bp):
TTTAGTGTTTAGGATTTAAGG
Found at i:79952304 original size:22 final size:22
Alignment explanation
Indices: 79952250--79952305 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
79952240 TGGTTTAGTG
79952250 TTTAGGGTTTAAAGTTTATAGA
1 TTTAGGGTTTAAAGTTTATAGA
* ** *
79952272 TTTAGGATTTAGGGTTT-TATA
1 TTTAGGGTTTAAAGTTTATAGA
79952293 TTTAAGGGTTTAA
1 TTT-AGGGTTTAA
79952306 GGGACTGTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
21 6 0.22
22 21 0.78
ACGTcount: A:0.29, C:0.00, G:0.23, T:0.48
Consensus pattern (22 bp):
TTTAGGGTTTAAAGTTTATAGA
Found at i:79952547 original size:40 final size:40
Alignment explanation
Indices: 79952461--79952607 Score: 152
Period size: 40 Copynumber: 3.7 Consensus size: 40
79952451 TTTTTTTGCA
* * * * * **
79952461 GCGTTTTTCAAAAAGCGCTGCTAATGGTTGACCTATAGTA
1 GCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCG
*
79952501 GCGTTTTTTAAAAAGCGCCGCTACTGCTCGATCTAT-GACG
1 GCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAG-CG
* * * *
79952541 GTGTTTTTTTAAAAGCGCTGTTAATGCTCGATCTATAGCG
1 GCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCG
* *
79952581 GCATTTTTCAAAAAGCGCCGCTAATGC
1 GCGTTTTTTAAAAAGCGCCGCTAATGC
79952608 CACTGAAGCT
Statistics
Matches: 86, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 84 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (40 bp):
GCGTTTTTTAAAAAGCGCCGCTAATGCTCGATCTATAGCG
Found at i:79952721 original size:39 final size:41
Alignment explanation
Indices: 79952639--79952722 Score: 109
Period size: 42 Copynumber: 2.1 Consensus size: 41
79952629 GACGGCGTTG
*
79952639 TGCTCGATCTATAGCGGCATTTTTTTAAAAAAACGCCGCTAA
1 TGCTCGACCTATAGCGGCA-TTTTTTAAAAAAACGCCGCTAA
* * *
79952681 TGCTCGACCTATAGTGGCA-TTTTTCAAAAAGCG-CGCTAA
1 TGCTCGACCTATAGCGGCATTTTTTAAAAAAACGCCGCTAA
79952720 TGC
1 TGC
79952723 CACTAAAGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 9 0.24
40 12 0.32
42 17 0.45
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.30
Consensus pattern (41 bp):
TGCTCGACCTATAGCGGCATTTTTTAAAAAAACGCCGCTAA
Found at i:79952777 original size:115 final size:115
Alignment explanation
Indices: 79952525--79952808 Score: 369
Period size: 115 Copynumber: 2.5 Consensus size: 115
79952515 GCGCCGCTAC
* * *
79952525 TGCTCGATCTAT-GACGGTGTTTTTTT-AAAAGCGCTGTTAATGCTCGATCTATAGCGGCATTTT
1 TGCTCAATCTATAG-CGGTGTTTTTTTAAAAAGCGCCGTTAATGCTCGACCTATAGCGGCATTTT
*
79952588 TCAAAAAGCGCCGCTAATGCCACTGAAGCTCAACATAAAACGACGGCGTTG
65 TCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTG
* ** * * *
79952639 TGCTCGATCTATAGCGGCATTTTTTTAAAAAAACGCCGCTAATGCTCGACCTATAGTGGCATTTT
1 TGCTCAATCTATAGCGGTGTTTTTTT-AAAAAGCGCCGTTAATGCTCGACCTATAGCGGCATTTT
*
79952704 TCAAAAAGCG-CGCTAATGCCACTAAAGCTCAACATAAAACGACGGTGTTG
65 TCAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTG
* * * ** *
79952754 TGCTTAATTTTTTTCGGTG-TTTTTCAAAAAGCGCCGTTAATGCTCGACCTATAGC
1 TGCTCAATCTATAGCGGTGTTTTTTTAAAAAGCGCCGTTAATGCTCGACCTATAGC
79952809 AACGTTTTTT
Statistics
Matches: 146, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
113 27 0.18
114 27 0.18
115 50 0.34
116 42 0.29
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (115 bp):
TGCTCAATCTATAGCGGTGTTTTTTTAAAAAGCGCCGTTAATGCTCGACCTATAGCGGCATTTTT
CAAAAAGCGCCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTG
Found at i:79957478 original size:28 final size:28
Alignment explanation
Indices: 79957442--79957501 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
79957432 TCAAACAAAT
* * *
79957442 TCAATATTATCCTGTAATAGCTTCATCA
1 TCAACATTATCCTCTAATAACTTCATCA
79957470 TCAACATTATCCTCTAATAACTTCATCA
1 TCAACATTATCCTCTAATAACTTCATCA
79957498 TCAA
1 TCAA
79957502 TAATACAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (28 bp):
TCAACATTATCCTCTAATAACTTCATCA
Found at i:79964537 original size:39 final size:39
Alignment explanation
Indices: 79964495--79964658 Score: 256
Period size: 39 Copynumber: 4.2 Consensus size: 39
79964485 ATGTGTTGAA
*
79964495 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
79964534 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* *
79964573 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
* * * *
79964612 TGTGCGAGTTGTGATACCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAATTGTGATATCCGGGCTAAG-CCCGAAGGCAAT
79964652 TGTGCGA
1 TGTGCGA
79964659 GTTCCACAAC
Statistics
Matches: 117, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 99 0.85
40 18 0.15
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (39 bp):
TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
Found at i:79964683 original size:39 final size:39
Alignment explanation
Indices: 79964495--79964687 Score: 217
Period size: 39 Copynumber: 4.9 Consensus size: 39
79964485 ATGTGTTGAA
* * * *
79964495 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAA
1 TGTGCGAGTTATGATAACCGGGCTAAGCCCGAAGGCAAT
* * *
79964534 TGTGCGAATTGTGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATAACCGGGCTAAGCCCGAAGGCAAT
*
79964573 TGTGCGAGTTATGATATCCGGGCTAAGCCCGAAGGCAAT
1 TGTGCGAGTTATGATAACCGGGCTAAGCCCGAAGGCAAT
* * * *
79964612 TGTGCGAGTTGTGATACCCGGGTTAAGTCCCGAAGGCATT
1 TGTGCGAGTTATGATAACCGGGCTAAG-CCCGAAGGCAAT
** * *
79964652 TGTGCGAGTT-CCACAACCGGGCTATGTCCCGAAGGC
1 TGTGCGAGTTATGATAACCGGGCTAAG-CCCGAAGGC
79964688 GTTTGAACGA
Statistics
Matches: 140, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
39 119 0.85
40 21 0.15
ACGTcount: A:0.24, C:0.22, G:0.31, T:0.23
Consensus pattern (39 bp):
TGTGCGAGTTATGATAACCGGGCTAAGCCCGAAGGCAAT
Found at i:79968424 original size:40 final size:39
Alignment explanation
Indices: 79968379--79968507 Score: 127
Period size: 40 Copynumber: 3.3 Consensus size: 39
79968369 CGGAATATAA
79968379 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
79968419 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
79968459 CCGGATGTAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
79968498 CCGGATATAA
1 CCGGATATAA
79968508 TTTCCAGCAT
Statistics
Matches: 71, Mismatches: 14, Indels: 9
0.76 0.15 0.10
Matches are distributed among these distances:
38 1 0.01
39 16 0.23
40 52 0.73
41 1 0.01
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:79972091 original size:2 final size:2
Alignment explanation
Indices: 79972084--79972113 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
79972074 CGGCTCTTGC
79972084 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79972114 GCACATGATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:79972960 original size:79 final size:80
Alignment explanation
Indices: 79972817--79972999 Score: 228
Period size: 79 Copynumber: 2.3 Consensus size: 80
79972807 TCGAATGATA
* * *
79972817 TCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCAGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCAGGACTAAGATCCGAAGGCATT
79972882 TGTGCGAGTTACTAAT
66 TGTGCGAGTTACT-AT
* * * **
79972898 TCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCAGGACTAAGAT-CCGAAGGCAT
79972960 TTGTGCGAGTTACTAT
65 TTGTGCGAGTTACTAT
** *
79972976 AACGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
79973000 TGAGCGAGTA
Statistics
Matches: 89, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 11 0.12
79 53 0.60
80 14 0.16
81 11 0.12
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACTAAATCAGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTAT
Found at i:79972970 original size:40 final size:40
Alignment explanation
Indices: 79972816--79973008 Score: 223
Period size: 39 Copynumber: 4.8 Consensus size: 40
79972806 TTCGAATGAT
* * * *
79972816 ATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA
* *
79972857 ATCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAA
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA
* * *
79972897 TTCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
*
79972936 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-A
* *
79972977 A--CGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
79973009 AGCTATATCC
Statistics
Matches: 130, Mismatches: 18, Indels: 10
0.82 0.11 0.06
Matches are distributed among these distances:
39 62 0.48
40 40 0.31
41 27 0.21
42 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAA
Found at i:79973019 original size:79 final size:79
Alignment explanation
Indices: 79972819--79973034 Score: 226
Period size: 79 Copynumber: 2.7 Consensus size: 79
79972809 GAATGATATC
* * * **
79972819 CGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGT-GACTATATCAGGACTAAGATCCGAAGGCATTT
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGGGTTAAG-TCCGAAGGCATTT
**
79972883 GTGCGAGTTACTAATTC
63 GTGCGAGTTACTAATAA
* * *
79972900 CGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCCGGGTTAAGT-CCGAAGGCATTTG
79972963 TGCGAGTTACT-ATAA
64 TGCGAGTTACTAATAA
* * *
79972978 CGGGCTATGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGGTT-AAGTCCGAAGG
79973035 TATGTGATTC
Statistics
Matches: 113, Mismatches: 16, Indels: 15
0.78 0.11 0.10
Matches are distributed among these distances:
78 24 0.21
79 65 0.58
80 15 0.13
81 9 0.08
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAATAA
Found at i:79973032 original size:39 final size:39
Alignment explanation
Indices: 79972814--79973034 Score: 189
Period size: 39 Copynumber: 5.6 Consensus size: 39
79972804 TATTCGAATG
* * * *
79972814 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCC-GGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
* *
79972855 ATATCAGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGG-TTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
* * *
79972895 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGTGAGTTACT
1 ATA-TCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
79972934 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * * * *
79972974 ATAACGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATATCCGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
79973013 ATATCCGGTTAAATTCCGAAGG
1 ATATCCGGTTAAGTCCCGAAGG
79973035 TATGTGATTC
Statistics
Matches: 150, Mismatches: 22, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
38 2 0.01
39 77 0.51
40 43 0.29
41 27 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (39 bp):
ATATCCGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:79981124 original size:79 final size:79
Alignment explanation
Indices: 79980984--79981205 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 79
79980974 TATTCGAATG
* * * **
79980984 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGC
79981049 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
79981065 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGC
79981128 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
79981144 ATAACCGGGCTATGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
79981206 TATGTGATTC
Statistics
Matches: 123, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 1 0.01
79 64 0.52
80 46 0.37
81 12 0.10
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:79981186 original size:40 final size:40
Alignment explanation
Indices: 79980984--79981191 Score: 271
Period size: 40 Copynumber: 5.2 Consensus size: 40
79980974 TATTCGAATG
* * *
79980984 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACT
*
79981025 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACT
*
79981065 A-ATTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT
1 ATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
79981104 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
79981144 ATAACCGGGCTATGTCCCGAAGGCATTTGTGCGAG-TAGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
79981184 ATATCCGG
1 ATATCCGG
79981192 TTAAATTCCG
Statistics
Matches: 148, Mismatches: 13, Indels: 13
0.85 0.07 0.07
Matches are distributed among these distances:
39 37 0.25
40 82 0.55
41 28 0.19
42 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:79982668 original size:33 final size:33
Alignment explanation
Indices: 79982626--79982691 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
79982616 CATGAAATAA
79982626 TTATTTTAACATCAGATTTGTGGTCCCGAAACC
1 TTATTTTAACATCAGATTTGTGGTCCCGAAACC
79982659 TTATTTTAACATCAGATTTGTGGTCCCGAAACC
1 TTATTTTAACATCAGATTTGTGGTCCCGAAACC
79982692 ACTATTCTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (33 bp):
TTATTTTAACATCAGATTTGTGGTCCCGAAACC
Found at i:79988806 original size:30 final size:30
Alignment explanation
Indices: 79988767--79988847 Score: 78
Period size: 30 Copynumber: 2.7 Consensus size: 30
79988757 GATAATATAT
*
79988767 TATTAATATAAATTTTAATATTATTAAACA
1 TATTCATATAAATTTTAATATTATTAAACA
*
79988797 TATAT-ATATATATATATT--TATTATTAAACA
1 TAT-TCATATA-A-ATTTTAATATTATTAAACA
*
79988827 TATTCATATATATATTTAATA
1 TATTCATATAAAT-TTTAATA
79988848 ATACTAGTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
28 2 0.05
29 3 0.07
30 28 0.68
31 4 0.10
32 4 0.10
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (30 bp):
TATTCATATAAATTTTAATATTATTAAACA
Found at i:79988875 original size:15 final size:16
Alignment explanation
Indices: 79988855--79988888 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
79988845 ATAATACTAG
79988855 TTTTT-AATGTTATAT
1 TTTTTAAATGTTATAT
79988870 TTTTTAAATGTTATAT
1 TTTTTAAATGTTATAT
79988886 TTT
1 TTT
79988889 AATTGCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTTTAAATGTTATAT
Found at i:79988890 original size:14 final size:15
Alignment explanation
Indices: 79988855--79988888 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
79988845 ATAATACTAG
79988855 TTTTT-AATGTTATA
1 TTTTTAAATGTTATA
79988869 TTTTTTAAATGTTATA
1 -TTTTTAAATGTTATA
79988885 TTTT
1 TTTT
79988889 AATTGCAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TTTTTAAATGTTATA
Found at i:79988956 original size:10 final size:11
Alignment explanation
Indices: 79988935--79988984 Score: 57
Period size: 12 Copynumber: 4.5 Consensus size: 11
79988925 TAGATTTTTG
79988935 AATATAATTAA
1 AATATAATTAA
79988946 AATAT-ATTAA
1 AATATAATTAA
* *
79988956 ATTATCAATTCA
1 AATAT-AATTAA
79988968 AATCATAATTAA
1 AAT-ATAATTAA
79988980 AATAT
1 AATAT
79988985 TTTTATCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
10 9 0.28
11 7 0.22
12 14 0.44
13 2 0.06
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATAATTAA
Found at i:79989448 original size:23 final size:23
Alignment explanation
Indices: 79989408--79989453 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
79989398 GATTCTAGAT
*
79989408 ATGATATAAATTTTTTTAATAATAA
1 ATGATAT-AATTTATTTAA-AATAA
79989433 ATGATAT-ATTTATTTAAAATA
1 ATGATATAATTTATTTAAAATA
79989454 TTTTTATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 9 0.45
25 7 0.35
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
ATGATATAATTTATTTAAAATAA
Found at i:79989557 original size:17 final size:17
Alignment explanation
Indices: 79989537--79989571 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
79989527 TTTCATAATC
*
79989537 TTAAAAATATTAATATT
1 TTAAAAATATAAATATT
*
79989554 TTAATAATATAAATATT
1 TTAAAAATATAAATATT
79989571 T
1 T
79989572 ATACTTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TTAAAAATATAAATATT
Found at i:79991363 original size:18 final size:19
Alignment explanation
Indices: 79991326--79991382 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
79991316 TTTTTTAAAA
*
79991326 TATAAA-ATTTTAAATATT
1 TATAAATATTTTGAATATT
79991344 TATAAATATTTTGAAT-TT
1 TATAAATATTTTGAATATT
*
79991362 TA-AAACTTATTTTGAACATT
1 TATAAA--TATTTTGAATATT
79991382 T
1 T
79991383 TTTTTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 3 0.09
18 10 0.30
19 17 0.52
20 3 0.09
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (19 bp):
TATAAATATTTTGAATATT
Found at i:79998444 original size:49 final size:49
Alignment explanation
Indices: 79998388--79998565 Score: 232
Period size: 49 Copynumber: 3.5 Consensus size: 49
79998378 TACATATATG
*
79998388 TGTGATAAGGCCGAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
* *
79998437 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
*
79998486 TGTGATAAGGCC-ATTGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATA
1 TGTGATAAGGCCTAATGGCC-AAT-G-CGA-----TGAATGTGAAAGTGTATGTATA
*
79998542 TGTGATAAGGCCTAATGGCTAATG
1 TGTGATAAGGCCTAATGGCCAATG
79998566 TAAAATATAT
Statistics
Matches: 112, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
48 6 0.05
49 60 0.54
50 1 0.01
51 2 0.02
55 1 0.01
56 37 0.33
57 5 0.04
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (49 bp):
TGTGATAAGGCCTAATGGCCAATGCGATGAATGTGAAAGTGTATGTATA
Found at i:79998506 original size:56 final size:56
Alignment explanation
Indices: 79998445--79998553 Score: 209
Period size: 56 Copynumber: 1.9 Consensus size: 56
79998435 TATGTGATAA
79998445 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCATT
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCATT
*
79998501 GGCCTAATGGCCGATGTGGTGAATGTGAAAGTGTATGTATATGTGATAAGGCC
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCC
79998554 TAATGGCTAA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.28, C:0.11, G:0.32, T:0.29
Consensus pattern (56 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATGTGATAAGGCCATT
Found at i:79998727 original size:36 final size:37
Alignment explanation
Indices: 79998662--79998743 Score: 132
Period size: 36 Copynumber: 2.3 Consensus size: 37
79998652 GGAATATGTT
*
79998662 CGGGTGAGA-CCGATGACTACGTGTGGAGATTATGAC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
*
79998698 CGGGTAAGACCCGATGACTACGTGT-GAGATTATGTC
1 CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
79998734 CGGGTAAGAC
1 CGGGTAAGAC
79998744 TTCTTTTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
36 28 0.65
37 15 0.35
ACGTcount: A:0.26, C:0.18, G:0.34, T:0.22
Consensus pattern (37 bp):
CGGGTAAGACCCGATGACTACGTGTGGAGATTATGAC
Found at i:80000787 original size:26 final size:26
Alignment explanation
Indices: 80000751--80000820 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
80000741 AGAAAGAAAG
80000751 AAAAACAATATATATGTAAAAAAAAC
1 AAAAACAATATATATGTAAAAAAAAC
80000777 AAAAACAATATATATGTAAAAAAAAC
1 AAAAACAATATATATGTAAAAAAAAC
*
80000803 GAAAACAATATATATGTA
1 AAAAACAATATATATGTA
80000821 TTTTAATTCA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.66, C:0.07, G:0.06, T:0.21
Consensus pattern (26 bp):
AAAAACAATATATATGTAAAAAAAAC
Found at i:80008251 original size:67 final size:65
Alignment explanation
Indices: 80008170--80008367 Score: 186
Period size: 68 Copynumber: 3.0 Consensus size: 65
80008160 CTAGCCAGTT
* * * *
80008170 TATCTCGTAGCTCTCTTGTTTACATGGTGTCCTTCACCTAGAACCACGCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTG---TACACATAGAACCACCCATGCGACCTAGCTACA
80008235 T-A
63 TCA
* * *
80008237 TATCCCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCA
* * * ** *
80008302 TATTGTCTCGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTA
1 TA---TCTCGTAGCTCTCTTGT-CTACATGGTGTACACAT-AGAACCACCCATGCGACCTAGCTA
80008365 CAT
61 CAT
80008368 ACCATCTGTA
Statistics
Matches: 110, Mismatches: 15, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
64 29 0.26
65 3 0.03
67 28 0.25
68 49 0.45
69 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.31
Consensus pattern (65 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGAACCACCCATGCGACCTAGCTACATCA
Found at i:80008864 original size:29 final size:30
Alignment explanation
Indices: 80008832--80008891 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
80008822 TCCTTAACTC
80008832 AAACTTTGGAAAAATTACA-TTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * * *
80008861 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
80008891 A
1 A
80008892 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:80013896 original size:46 final size:46
Alignment explanation
Indices: 80013686--80013903 Score: 289
Period size: 46 Copynumber: 4.7 Consensus size: 46
80013676 TGCTATAGTG
* * * *
80013686 TCTTTCAACTATGGTCTTACTCATTTTC-TGA-CATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCAT-ATCAGGATGCCATGGTA
** *
80013732 TCTTTCAACCATGGTCTTATTCATTTCATATCA-TATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGA-TGCCATGGTA
* * * *
80013778 TCTTTCAACCGTGGTCTTACACATTTCATATCAGGTTGCCGTGATA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGATGCCATGGTA
80013824 TCTTTCAACCATGGTCTTACACATTTCATATCAGGATGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGATGCCATGGTA
80013870 TCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
80013904 AGAGCACACT
Statistics
Matches: 153, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
45 5 0.03
46 148 0.97
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGATGCCATGGTA
Found at i:80021955 original size:25 final size:25
Alignment explanation
Indices: 80021917--80021966 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
80021907 TAATGCGAAC
* * *
80021917 GTATATGAAGTGGTTGAATTATGGA
1 GTATATAAAATGGTTGAATGATGGA
*
80021942 GTATATAAAATGGTTGGATGATGGA
1 GTATATAAAATGGTTGAATGATGGA
80021967 ATTTAATGTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (25 bp):
GTATATAAAATGGTTGAATGATGGA
Found at i:80025094 original size:103 final size:103
Alignment explanation
Indices: 80024909--80025094 Score: 248
Period size: 103 Copynumber: 1.8 Consensus size: 103
80024899 AGACCATGAG
** *
80024909 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCTTATAA
1 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAGAA
* *
80024974 ATAATTAAAGGTTATATTCTGTGTTTATGATGTGCGTA
66 ATAATTAAACGTAATATTCTGTGTTTATGATGTGCGTA
* * * *
80025012 TGTGACAGCCC-AAAGTTGACCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGA
1 TGTGACAGCCCTAAA-TTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAGA
** *
80025076 AATGTTTGAACGTAATATT
65 AATAATTAAACGTAATATT
80025095 TATTGTCTAG
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
102 3 0.04
103 67 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (103 bp):
TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTCGGGACCACGAAACCGAGTCACAGAA
ATAATTAAACGTAATATTCTGTGTTTATGATGTGCGTA
Found at i:80026813 original size:39 final size:40
Alignment explanation
Indices: 80026712--80026856 Score: 177
Period size: 39 Copynumber: 3.6 Consensus size: 40
80026702 CGAATGGTAT
* * ** * *
80026712 CCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACCAAAA
*
80026753 CCGGG-TCAATTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCT-AAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
80026793 CCGGG-TAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
* *
80026832 CCGGGCTATGTCCCGAAGGCTTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
80026857 AGCAAGTCGC
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 37 0.40
40 31 0.34
41 24 0.26
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCAAAA
Found at i:80035399 original size:80 final size:80
Alignment explanation
Indices: 80035315--80035463 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80035305 TATGGTAACC
* * * *
80035315 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80035379 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80035395 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80035460 CCGG
66 CCGG
80035464 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80035405 original size:40 final size:38
Alignment explanation
Indices: 80035356--80035463 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80035346 ATCACGATTT
*
80035356 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80035396 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80035436 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80035464 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80041330 original size:40 final size:40
Alignment explanation
Indices: 80041264--80041430 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
80041254 AAATTGAATG
* * *
80041264 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
80041303 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
80041343 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
80041383 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
80041423 ATATCCGG
1 ATATCCGG
80041431 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:80045790 original size:40 final size:39
Alignment explanation
Indices: 80045730--80045913 Score: 129
Period size: 40 Copynumber: 4.6 Consensus size: 39
80045720 CCCGCACAAG
* * * *
80045730 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATAT-ACGACTTGCACAAAT
* * * *
80045770 GCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATA-TACGACTTGCACAAAT
* * * * *
80045810 TCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATA-CGACTTGCACAAAT
* * * *
80045850 GCCTTCGGGTCTTAACCCGGTTATA--ATTTCCATCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATACGACTTGCA-CA-AA-T
* *
80045890 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
80045914 CATTCAATTT
Statistics
Matches: 111, Mismatches: 28, Indels: 10
0.74 0.19 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 2 0.02
40 103 0.93
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (39 bp):
GCCTTCGGGTCTTAGCCCGGATATACGACTTGCACAAAT
Found at i:80057531 original size:52 final size:50
Alignment explanation
Indices: 80057420--80057553 Score: 155
Period size: 52 Copynumber: 2.6 Consensus size: 50
80057410 ATCGGGTACG
* * * *
80057420 CATAGTAGCCTACACTTAGTACGACACATGCGACTTAACCATCTGTTACT
1 CATAGTAGCCTGCACTTAGTACTACACATGTGAATTAACCATCTGTTACT
* *
80057470 CGTAGTAGCCTGCACTTAGAACTACACATGTGAATTAAAACCAT-T-TTAAACT
1 CATAGTAGCCTGCACTTAGTACTACACATGTGAATT--AACCATCTGTT--ACT
*
80057522 CATAGTAGCCTGCACATAGTACTACACATGTG
1 CATAGTAGCCTGCACTTAGTACTACACATGTG
80057554 TTCTCACAAT
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
50 32 0.45
51 1 0.01
52 38 0.54
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.28
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGAATTAACCATCTGTTACT
Found at i:80060690 original size:43 final size:43
Alignment explanation
Indices: 80060543--80060742 Score: 176
Period size: 43 Copynumber: 4.7 Consensus size: 43
80060533 ATGTTTTTCG
* * * *
80060543 TGTAAGACCACGTCTGGGA-TGTTGGCATCAAAT-TCTGTTTTACG
1 TGTAAGACCACGTCTGGGACAG-TGGCATC-GATGTCTG-ATTACA
* * ***
80060587 TGTAAGACCACGTCTAGGACA-TCGGCATCG-TATCTGATTTTG
1 TGTAAGACCACGTCTGGGACAGT-GGCATCGATGTCTGATTACA
* * *
80060629 TGTAATACC-CTGTTTGGGACAGTGGCATCGATGTTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATCGATGTCTGATTACA
* *
80060672 TGTAAGACCACGTCTGGGACATTGGCATCGATGTTTGATTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATGTCTGATTACA
* *
80060715 TATAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACGTCTGGGACAGTGGCAT
80060743 TGTATATGTT
Statistics
Matches: 131, Mismatches: 18, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.21
43 78 0.60
44 25 0.19
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATGTCTGATTACA
Found at i:80063728 original size:30 final size:30
Alignment explanation
Indices: 80063692--80063751 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
80063682 TGATGCATCT
*
80063692 TTGAATGGTTTAGGCTGTGTTTTGATGCAG
1 TTGAATGGTTTAGGCTATGTTTTGATGCAG
* *
80063722 TTGAATGGTTTAGGCTATTTTTTTATGCAG
1 TTGAATGGTTTAGGCTATGTTTTGATGCAG
80063752 GAAGGTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.18, C:0.07, G:0.28, T:0.47
Consensus pattern (30 bp):
TTGAATGGTTTAGGCTATGTTTTGATGCAG
Found at i:80065316 original size:12 final size:12
Alignment explanation
Indices: 80065299--80065340 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
80065289 AGTTAGAAAA
80065299 GTTTCATAATGT
1 GTTTCATAATGT
*
80065311 GTTTCATGAA-AT
1 GTTTCAT-AATGT
80065323 -TTTCATAATGT
1 GTTTCATAATGT
80065334 GTTTCAT
1 GTTTCAT
80065341 GTATCCATGC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 2 0.08
11 7 0.28
12 14 0.56
13 2 0.08
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.50
Consensus pattern (12 bp):
GTTTCATAATGT
Found at i:80072276 original size:28 final size:28
Alignment explanation
Indices: 80072244--80072310 Score: 116
Period size: 28 Copynumber: 2.4 Consensus size: 28
80072234 CGTGTCCATG
*
80072244 GCCCGTGTCCTTCACACGGCCATGACAC
1 GCCCGTGTCCTTCACACGGCAATGACAC
*
80072272 GCCCGTGTCCTTCACATGGCAATGACAC
1 GCCCGTGTCCTTCACACGGCAATGACAC
80072300 GCCCGTGTCCT
1 GCCCGTGTCCT
80072311 AGCCCGTGTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.16, C:0.40, G:0.22, T:0.21
Consensus pattern (28 bp):
GCCCGTGTCCTTCACACGGCAATGACAC
Found at i:80073334 original size:46 final size:46
Alignment explanation
Indices: 80073258--80073476 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
80073248 GGGGTAAGGT
* *
80073258 GCCGATGCCATATCCTAGACATGGTCTTACACTGACTATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AG
* *
80073306 GCCGATGCATGTCCCAGATATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAG
* ** * *
80073352 GCCGATGCAGGTCCTGGACATGTCTTACACT-AGC-ACTCATCTTGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGA-CTA-TCATCTCGAG
* * * * * * *
80073398 GCCGATTCCATATCCCAGACATGGTCTTACACAGGCTCTCATAAT-GTG
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACTGACTATCAT-CTCGAG
*
80073446 GTCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
80073477 AGCCCACAAT
Statistics
Matches: 135, Mismatches: 26, Indels: 22
0.74 0.14 0.12
Matches are distributed among these distances:
45 2 0.01
46 69 0.51
47 37 0.27
48 26 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGAG
Found at i:80087702 original size:11 final size:11
Alignment explanation
Indices: 80087688--80087744 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 11
80087678 CAATATTGAT
80087688 ATGATATGCAC
1 ATGATATGCAC
*
80087699 ATGATATG--T
1 ATGATATGCAC
80087708 ATGATATGCAC
1 ATGATATGCAC
*
80087719 ATGATATG--T
1 ATGATATGCAC
80087728 ATGATATGCAC
1 ATGATATGCAC
80087739 ATGATA
1 ATGATA
80087745 AATGCATTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 16 0.42
11 22 0.58
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:80087712 original size:20 final size:20
Alignment explanation
Indices: 80087687--80087744 Score: 116
Period size: 20 Copynumber: 2.9 Consensus size: 20
80087677 ACAATATTGA
80087687 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
80087707 TATGATATGCACATGATATG
1 TATGATATGCACATGATATG
80087727 TATGATATGCACATGATA
1 TATGATATGCACATGATA
80087745 AATGCATTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.34
Consensus pattern (20 bp):
TATGATATGCACATGATATG
Found at i:80087813 original size:26 final size:26
Alignment explanation
Indices: 80087784--80087903 Score: 154
Period size: 26 Copynumber: 4.7 Consensus size: 26
80087774 GGAGGAAGTG
*
80087784 CAAAAGGGCTTATGTCCC-AGTTTACC
1 CAAAAGGGCTTATG-CCCTAGTTTATC
*
80087810 CAAAAGGGCTTATGCCCTAGTTTATT
1 CAAAAGGGCTTATGCCCTAGTTTATC
* *
80087836 AAAAAGGGCTTATGCCCTAGTTTATT
1 CAAAAGGGCTTATGCCCTAGTTTATC
*
80087862 GAAAAGGGCTTATGCCCTAGTTTA-C
1 CAAAAGGGCTTATGCCCTAGTTTATC
* *
80087887 CGAAAGGGCTTTTGCCC
1 CAAAAGGGCTTATGCCC
80087904 CGGTTATTAA
Statistics
Matches: 85, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
25 17 0.20
26 68 0.80
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
CAAAAGGGCTTATGCCCTAGTTTATC
Found at i:80094413 original size:26 final size:26
Alignment explanation
Indices: 80094384--80094491 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80094374 TGATACAAAT
80094384 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80094410 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80094436 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80094462 TGATAATGGTTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
80094488 TGAT
1 TGAT
80094492 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80099673 original size:15 final size:15
Alignment explanation
Indices: 80099649--80099680 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80099639 TATGCATGCA
*
80099649 AAATATAAAAGACAT
1 AAATACAAAAGACAT
80099664 AAATACAAAAGACAT
1 AAATACAAAAGACAT
80099679 AA
1 AA
80099681 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:80102231 original size:17 final size:17
Alignment explanation
Indices: 80102195--80102231 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
80102185 TAATTGAGTG
*
80102195 ATTCTAATTCACTATTC
1 ATTCTAATTCACTATAC
*
80102212 ATTCTAATTCATTATAC
1 ATTCTAATTCACTATAC
80102229 ATT
1 ATT
80102232 TTAAATTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTCTAATTCACTATAC
Found at i:80102412 original size:14 final size:14
Alignment explanation
Indices: 80102393--80102422 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80102383 AAAATATTCA
*
80102393 AAGAAATAATATTT
1 AAGAAATAATAGTT
80102407 AAGAAATAATAGTT
1 AAGAAATAATAGTT
80102421 AA
1 AA
80102423 TTTTAGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (14 bp):
AAGAAATAATAGTT
Found at i:80105268 original size:20 final size:20
Alignment explanation
Indices: 80105234--80105285 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
80105224 TTATGTCACA
80105234 TCAATATTATTATCCTGAATT
1 TCAATATT-TTATCCTGAATT
*
80105255 TTAATATTTTATCCTGAATT
1 TCAATATTTTATCCTGAATT
*
80105275 TCAGTATTTTA
1 TCAATATTTTA
80105286 ATTCGGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.31, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TCAATATTTTATCCTGAATT
Found at i:80106896 original size:16 final size:16
Alignment explanation
Indices: 80106877--80106946 Score: 61
Period size: 16 Copynumber: 4.2 Consensus size: 16
80106867 GATTTTTTAA
80106877 TTTTAATTTTATATAT
1 TTTTAATTTTATATAT
*
80106893 TTTTAATTCTT-TTTAT
1 TTTTAATT-TTATATAT
* *
80106909 TTTTAGTTTTATAATAA
1 TTTTAATTTTAT-ATAT
* *
80106926 TGTTAATGTTATATAAT
1 TTTTAATTTTATAT-AT
80106943 TTTT
1 TTTT
80106947 TACCACTATC
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
15 2 0.05
16 22 0.54
17 17 0.41
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (16 bp):
TTTTAATTTTATATAT
Found at i:80106932 original size:33 final size:32
Alignment explanation
Indices: 80106870--80106932 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
80106860 ACGTTAAGAT
* *
80106870 TTTTTAATTTTAATTTTATATATTTTTAATTC
1 TTTTTAATTTTAATTTTATATAATGTTAATTC
* *
80106902 TTTTTATTTTTAGTTTTATAATAATGTTAAT
1 TTTTTAATTTTAATTTTAT-ATAATGTTAAT
80106933 GTTATATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 17 0.65
33 9 0.35
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.67
Consensus pattern (32 bp):
TTTTTAATTTTAATTTTATATAATGTTAATTC
Found at i:80107717 original size:19 final size:19
Alignment explanation
Indices: 80107695--80107737 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
80107685 GAAATGGTGG
* *
80107695 CAAAATAATAAGAAAACAA
1 CAAAACAATAAAAAAACAA
*
80107714 CAAAACATTAAAAAAACAA
1 CAAAACAATAAAAAAACAA
80107733 CAAAA
1 CAAAA
80107738 AAAGAGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.74, C:0.14, G:0.02, T:0.09
Consensus pattern (19 bp):
CAAAACAATAAAAAAACAA
Found at i:80108397 original size:29 final size:30
Alignment explanation
Indices: 80108364--80108430 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
80108354 TATTCTTATT
*
80108364 AAAATTTAGT-TATTGTA-TTTTTAACTTTA
1 AAAATTTAGTCTATT-TACTTTTTAAATTTA
* *
80108393 AAAATTTAGTCTCTTTACTTTTTAAATTTT
1 AAAATTTAGTCTATTTACTTTTTAAATTTA
80108423 AAAATTTA
1 AAAATTTA
80108431 AATTTAATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 12 0.36
30 21 0.64
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (30 bp):
AAAATTTAGTCTATTTACTTTTTAAATTTA
Found at i:80109445 original size:22 final size:22
Alignment explanation
Indices: 80109404--80109445 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80109394 AAATTAAATT
* *
80109404 ATATATTTTTATGATATTAAAA
1 ATATAATTTTATCATATTAAAA
*
80109426 ATATAATTTTATCATTTTAA
1 ATATAATTTTATCATATTAA
80109446 TAATTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
ATATAATTTTATCATATTAAAA
Found at i:80109816 original size:17 final size:18
Alignment explanation
Indices: 80109775--80109814 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
80109765 AGTGGCCATA
80109775 TAAAAGTCAAACTCTTTT
1 TAAAAGTCAAACTCTTTT
80109793 TAAAAGTCAAACTCTTTT
1 TAAAAGTCAAACTCTTTT
80109811 TAAA
1 TAAA
80109815 GTACTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (18 bp):
TAAAAGTCAAACTCTTTT
Found at i:80110388 original size:15 final size:16
Alignment explanation
Indices: 80110368--80110400 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80110358 TATTACATAG
80110368 AATAAA-ATATTAAAA
1 AATAAATATATTAAAA
*
80110383 AATAAATATTTTAAAA
1 AATAAATATATTAAAA
80110399 AA
1 AA
80110401 AGACATGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAAATATATTAAAA
Found at i:80111313 original size:11 final size:11
Alignment explanation
Indices: 80111297--80111332 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
80111287 TCACACACAT
80111297 TCTCAAATCTC
1 TCTCAAATCTC
*
80111308 TCTCAAATTTC
1 TCTCAAATCTC
*
80111319 TCTCAATTCTC
1 TCTCAAATCTC
80111330 TCT
1 TCT
80111333 TAATTTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.44
Consensus pattern (11 bp):
TCTCAAATCTC
Found at i:80111323 original size:22 final size:22
Alignment explanation
Indices: 80111296--80111349 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
80111286 CTCACACACA
80111296 TTCTCAAATCTCTCTCAAATTTC
1 TTCTCAAATCTCTCT-AAATTTC
* *
80111319 -TCTCAATTCTCTCTTAATTTC
1 TTCTCAAATCTCTCTAAATTTC
80111340 TTACTCAAAT
1 TT-CTCAAAT
80111350 TTTATTTCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 6 0.23
22 14 0.54
23 6 0.23
ACGTcount: A:0.26, C:0.28, G:0.00, T:0.46
Consensus pattern (22 bp):
TTCTCAAATCTCTCTAAATTTC
Found at i:80111328 original size:9 final size:11
Alignment explanation
Indices: 80111297--80111351 Score: 51
Period size: 11 Copynumber: 4.9 Consensus size: 11
80111287 TCACACACAT
*
80111297 TCTCAAATCTC
1 TCTCAAATTTC
80111308 TCTCAAATTTC
1 TCTCAAATTTC
80111319 TCTC-AA-TTC
1 TCTCAAATTTC
*
80111328 TCTCTTAATTTC
1 TCTC-AAATTTC
80111340 TTACTCAAATTT
1 -T-CTCAAATTT
80111352 TATTTCTCTC
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
9 7 0.19
10 2 0.05
11 16 0.43
12 3 0.08
13 6 0.16
14 3 0.08
ACGTcount: A:0.25, C:0.27, G:0.00, T:0.47
Consensus pattern (11 bp):
TCTCAAATTTC
Found at i:80112961 original size:19 final size:19
Alignment explanation
Indices: 80112925--80112961 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
80112915 TAACTAGACT
* *
80112925 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
80112944 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
80112962 GAAAAATGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:80113542 original size:143 final size:143
Alignment explanation
Indices: 80113283--80113641 Score: 623
Period size: 143 Copynumber: 2.5 Consensus size: 143
80113273 TTAGAAAAAA
80113283 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTTTGTTTGATAAATAAATTAAATAAT
1 AAGATATTTATTAATTAAATAATTAAATAATGAGA-TTTTTTGTTTGATAAATAAATTAAATAAT
*
80113348 GACAATTGTAATAAATTTATTGGTACAAATGTGAAAATGTAAGTGTGTACAATTGTAATATTAGT
65 GACAATTGTAATAAATTTATTGGTACAAATGTGAAAATATAAGTGTGTACAATTGTAATATTAGT
80113413 ATTTGATATTAAAT
130 ATTTGATATTAAAT
80113427 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTTGTTTGATAAATAAATTAAATAATG
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTTGTTTGATAAATAAATTAAATAATG
80113492 ACAATTGTAATAAATTTATTGGTACAAATGTGAAAATATAAGTGTGTACAATTGTAATATTAGTA
66 ACAATTGTAATAAATTTATTGGTACAAATGTGAAAATATAAGTGTGTACAATTGTAATATTAGTA
80113557 TTTGATATTAAAT
131 TTTGATATTAAAT
* * * * * *
80113570 AAGATATTTATTAATTAAATAATTATATTATGAGATTTTATG--TAATAAATATATTAAATTATG
1 AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTTGTTTGATAAATAAATTAAATAATG
*
80113633 ACAAATGTA
66 ACAATTGTA
80113642 TAGTAAAATT
Statistics
Matches: 207, Mismatches: 8, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
141 26 0.13
143 146 0.71
144 35 0.17
ACGTcount: A:0.45, C:0.02, G:0.11, T:0.42
Consensus pattern (143 bp):
AAGATATTTATTAATTAAATAATTAAATAATGAGATTTTTTGTTTGATAAATAAATTAAATAATG
ACAATTGTAATAAATTTATTGGTACAAATGTGAAAATATAAGTGTGTACAATTGTAATATTAGTA
TTTGATATTAAAT
Found at i:80114545 original size:15 final size:15
Alignment explanation
Indices: 80114525--80114581 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
80114515 CGATGAATTT
80114525 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
80114540 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
80114555 ATTGAATTTATATTG
1 ATTGAATTTATATTG
80114570 ATTGAA-TTATAT
1 ATTGAATTTATAT
80114582 AATATACATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:80117546 original size:20 final size:20
Alignment explanation
Indices: 80117508--80117555 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
80117498 TAAATTCTAA
* **
80117508 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
80117528 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
80117548 AAA-ATAAA
1 AAAGATAAA
80117556 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:80117580 original size:27 final size:26
Alignment explanation
Indices: 80117550--80117612 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
80117540 AGATAATTAA
80117550 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
80117577 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
80117604 AATATAAAT
1 AATA-AAAT
80117613 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:80117599 original size:15 final size:15
Alignment explanation
Indices: 80117579--80117608 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80117569 ATAATCCTAA
*
80117579 TAATTATCTTAATAT
1 TAATTATCCTAATAT
80117594 TAATTATCCTAATAT
1 TAATTATCCTAATAT
80117609 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:80118316 original size:94 final size:96
Alignment explanation
Indices: 80118209--80118390 Score: 215
Period size: 97 Copynumber: 1.9 Consensus size: 96
80118199 TTTTTTTTAT
* * * ** * *
80118209 TTTTTATTATTTATGC-ACGTATG-TATGTTTAACCTTTTGATGCAAAGAGTGATGACAGCCAAG
1 TTTTTATTATTTATGCTACCTAAGACATGTCGAACCTTTTGACGCAAAGAGTGATGACAACCAAG
*
80118272 CACCAAACCCCGGTTACTCAGCGTAACATAC
66 CACCAAACCCCAGTTACTCAGCGTAACATAC
* * * * *
80118303 TTTTTATTTTTTATTCTTCCTAAGAACATGTCGGACCTTTTGACGCGAAGAGTGATGACAACCAA
1 TTTTTATTATTTATGCTACCTAAG-ACATGTCGAACCTTTTGACGCAAAGAGTGATGACAACCAA
*
80118368 GCACCACACCCCAGTTACTCAGC
65 GCACCAAACCCCAGTTACTCAGC
80118391 CCAACGCGTT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
94 14 0.20
95 4 0.06
97 53 0.75
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (96 bp):
TTTTTATTATTTATGCTACCTAAGACATGTCGAACCTTTTGACGCAAAGAGTGATGACAACCAAG
CACCAAACCCCAGTTACTCAGCGTAACATAC
Found at i:80120949 original size:25 final size:23
Alignment explanation
Indices: 80120921--80121001 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 23
80120911 AAAATAATTA
*
80120921 AAAATAAAATAAATTGAAATAAAAT
1 AAAATAAAATAAAAT--AATAAAAT
80120946 AAAATAATAAATAAAATAATAAAAT
1 AAAAT-A-AAATAAAATAATAAAAT
*
80120971 AATATAATAATAATAATAATAGAAAT
1 AAAATAA-AATAA-AATAATA-AAAT
80120997 AAAAT
1 AAAAT
80121002 TTAAAATTAA
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
23 1 0.02
24 6 0.12
25 24 0.50
26 9 0.19
27 8 0.17
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (23 bp):
AAAATAAAATAAAATAATAAAAT
Found at i:80120997 original size:6 final size:5
Alignment explanation
Indices: 80120903--80121001 Score: 67
Period size: 5 Copynumber: 18.6 Consensus size: 5
80120893 TAATTTTATT
* * * *
80120903 AATAT AATAA AAT-A ATTAAA AATAA AATAA ATTGA AATAA AATAA AATAATA
1 AATAA AATAA AATAA AAT-AA AATAA AATAA AATAA AATAA AATAA AAT-A-A
*
80120955 AATAA AATAA TAA-AA TAATAT AATAA TAATAA TAATAGA AATAA AAT
1 AATAA AATAA -AATAA -AATAA AATAA -AATAA -AATA-A AATAA AAT
80121002 TTAAAATTAA
Statistics
Matches: 77, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
4 3 0.04
5 47 0.61
6 22 0.29
7 5 0.06
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (5 bp):
AATAA
Found at i:80120997 original size:9 final size:8
Alignment explanation
Indices: 80120906--80120998 Score: 77
Period size: 8 Copynumber: 11.5 Consensus size: 8
80120896 TTTTATTAAT
80120906 ATAATAAA
1 ATAATAAA
*
80120914 ATAATTAA
1 ATAATAAA
80120922 A-AATAAA
1 ATAATAAA
**
80120929 ATAA-ATTG
1 ATAATA-AA
80120937 A-AATAAA
1 ATAATAAA
80120944 ATAA-AATA
1 ATAATAA-A
80120952 ATAAATAAA
1 AT-AATAAA
80120961 ATAATAAA
1 ATAATAAA
*
80120969 ATAATATA
1 ATAATAAA
80120977 ATAATAATA
1 ATAATAA-A
80120986 ATAATAGAA
1 ATAATA-AA
80120995 ATAA
1 ATAA
80120999 AATTTAAAAT
Statistics
Matches: 68, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
7 12 0.18
8 36 0.53
9 17 0.25
10 3 0.04
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (8 bp):
ATAATAAA
Found at i:80127407 original size:27 final size:26
Alignment explanation
Indices: 80127377--80127439 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
80127367 AGATAATTAA
80127377 AATAAAATCCTAAAATTAAATAATCCT
1 AATAAAATCCTAAAATT-AATAATCCT
* * * *
80127404 AATAATTATCTTAATATTAATTATCCT
1 AATAA-AATCCTAAAATTAATAATCCT
80127431 AATATAAAT
1 AATA-AAAT
80127440 AAAATGGAGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.38
Consensus pattern (26 bp):
AATAAAATCCTAAAATTAATAATCCT
Found at i:80127426 original size:15 final size:15
Alignment explanation
Indices: 80127406--80127435 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80127396 ATAATCCTAA
*
80127406 TAATTATCTTAATAT
1 TAATTATCCTAATAT
80127421 TAATTATCCTAATAT
1 TAATTATCCTAATAT
80127436 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:80129006 original size:20 final size:21
Alignment explanation
Indices: 80128974--80129039 Score: 75
Period size: 19 Copynumber: 3.2 Consensus size: 21
80128964 TTTACATCTC
80128974 AAAAAAT-TATAAAAAAAC-T
1 AAAAAATATATAAAAAAACTT
*
80128993 AAAGAATATAT-AAAAAACTT
1 AAAAAATATATAAAAAAACTT
*
80129013 AAAAAATATATTAAAAAAGACTC
1 AAAAAATATA-TAAAAAA-ACTT
80129036 AAAA
1 AAAA
80129040 CCCTACACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 13 0.33
20 13 0.33
21 1 0.03
22 5 0.13
23 7 0.18
ACGTcount: A:0.70, C:0.06, G:0.03, T:0.21
Consensus pattern (21 bp):
AAAAAATATATAAAAAAACTT
Found at i:80129007 original size:18 final size:19
Alignment explanation
Indices: 80128974--80129029 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
80128964 TTTACATCTC
*
80128974 AAAAAATTATAAAAAAAC-T
1 AAAAAA-TATATAAAAACTT
*
80128993 AAAGAATATATAAAAAACTT
1 AAAAAATATAT-AAAAACTT
80129013 AAAAAATATATTAAAAA
1 AAAAAATATA-TAAAAA
80129030 AGACTCAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
18 4 0.13
19 11 0.35
20 15 0.48
21 1 0.03
ACGTcount: A:0.71, C:0.04, G:0.02, T:0.23
Consensus pattern (19 bp):
AAAAAATATATAAAAACTT
Found at i:80138069 original size:6 final size:6
Alignment explanation
Indices: 80138058--80138213 Score: 146
Period size: 6 Copynumber: 25.8 Consensus size: 6
80138048 AACCAAAATG
*
80138058 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
80138106 AGTAA-C AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC
* * * *
80138154 A-ATATT AGTGA-C AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AGA-ATC AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
80138203 AGAATC AGAAT
1 AGAATC AGAAT
80138214 GTGAATGCAA
Statistics
Matches: 125, Mismatches: 10, Indels: 30
0.76 0.06 0.18
Matches are distributed among these distances:
5 10 0.08
6 105 0.84
7 8 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:80138073 original size:30 final size:29
Alignment explanation
Indices: 80138037--80138213 Score: 179
Period size: 30 Copynumber: 6.1 Consensus size: 29
80138027 AAGAAACATT
* * *
80138037 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
80138067 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
80138097 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
80138127 ATC---A--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
*
80138151 ATCA-ATATTAGTGACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
80138181 ATCAGAATTAGGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
80138212 AT
1 AT
80138214 GTGAATGCAA
Statistics
Matches: 129, Mismatches: 7, Indels: 21
0.82 0.04 0.13
Matches are distributed among these distances:
24 23 0.18
27 2 0.02
29 1 0.01
30 77 0.60
31 26 0.20
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:80138119 original size:54 final size:54
Alignment explanation
Indices: 80138058--80138185 Score: 247
Period size: 54 Copynumber: 2.4 Consensus size: 54
80138048 AACCAAAATG
80138058 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAAC
*
80138112 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTGAC
1 AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAAC
80138166 AGAATCAGAATCAGAATCAG
1 AGAATCAGAATCAGAATCAG
80138186 AATTAGGTGA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.49, C:0.15, G:0.16, T:0.20
Consensus pattern (54 bp):
AGAATCAGAATCAGAATCAGTAACAGAATCAGAATCAGAATCAATATTAGTAAC
Found at i:80138368 original size:27 final size:26
Alignment explanation
Indices: 80138331--80138396 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
80138321 AGCATGGCTG
*
80138331 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
80138357 CCAGATACAGATATTGTGCCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
80138384 CCAGAATCAGATA
1 CCAGAA-CAGATA
80138397 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.24, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:80138401 original size:27 final size:27
Alignment explanation
Indices: 80138331--80138412 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
80138321 AGCATGGCTG
*
80138331 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGACAGAGCCA
* *
80138357 CCAG-ATACAGATATTGTGCCAGAGCCA
1 CCAGAAT-CAGATAATGTGACAGAGCCA
* *
80138384 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAATCAGATAATGTGACAGAGCCA
80138411 CC
1 CC
80138413 TAACAGAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.02
26 4 0.09
27 38 0.83
28 3 0.07
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.16
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGACAGAGCCA
Found at i:80138754 original size:27 final size:26
Alignment explanation
Indices: 80138715--80138797 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
80138705 TCGATCGGTC
* *
80138715 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
80138741 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
80138768 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
80138795 AAC
1 AAC
80138798 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Done.