Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 256 of 325
Found at i:80139062 original size:54 final size:54
Alignment explanation
Indices: 80138996--80139183 Score: 268
Period size: 54 Copynumber: 3.5 Consensus size: 54
80138986 GGGGCAAAAT
* * * *
80138996 GGTAATTTTACCCTACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * *
80139050 GGTATTTCTACCCTACAAGGGTATTTCGATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* * *
80139104 GGTAATTCTATCCTATAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
* *
80139158 GGAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
80139184 TAGTAATTTC
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 117 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
Found at i:80139191 original size:27 final size:27
Alignment explanation
Indices: 80138996--80139183 Score: 241
Period size: 27 Copynumber: 7.0 Consensus size: 27
80138986 GGGGCAAAAT
* ** *
80138996 GGTAATTTTACCCTACAAAGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
80139023 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80139050 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80139077 GATAATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
80139104 GGTAATTCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
80139131 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
80139158 GGAAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
80139184 TAGTAATTTC
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:80139226 original size:27 final size:27
Alignment explanation
Indices: 80139196--80139631 Score: 505
Period size: 27 Copynumber: 16.2 Consensus size: 27
80139186 GTAATTTCAC
*
80139196 AATCAAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
80139223 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
80139250 AA-CTGAGGGT-AAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGA-TAATTCTGTA
* * * **
80139277 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
80139304 AATTGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
80139331 AATCGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
* *
80139358 AA-CTGAGGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGATAATTCTGTA
80139385 AATCGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
80139412 AA-CTGAGGGTAAAACGATAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
* * **
80139439 AATTGAGGGTAAAACGGTAATT-TACA
1 AATCGAGGGTAAAACGATAATTCTGTA
80139465 AATCGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
*
80139492 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGATAATTCTGTA
*
80139519 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGATAATTCTGTA
* * **
80139546 AATCGAGGGTAAAACGGTAATTTTAAA
1 AATCGAGGGTAAAACGATAATTCTGTA
* *
80139573 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGATAATTCTGTA
80139600 AATCGAGGGTAAAAC-AGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTCTGTA
80139627 AATCG
1 AATCG
80139632 GGAGTACTTT
Statistics
Matches: 354, Mismatches: 37, Indels: 36
0.83 0.09 0.08
Matches are distributed among these distances:
26 30 0.08
27 316 0.89
28 8 0.02
ACGTcount: A:0.41, C:0.11, G:0.22, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTCTGTA
Found at i:80139648 original size:54 final size:54
Alignment explanation
Indices: 80139201--80139628 Score: 596
Period size: 54 Copynumber: 7.9 Consensus size: 54
80139191 TTCACAATCA
* *
80139201 AGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAACTG
* * * * * ** *
80139255 AGGGTAAACCAGTAATTCTGTAAATCAAGGGTAAAACGGTAATTTTACAAATTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
80139309 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
*
80139363 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* * * **
80139417 AGGGTAAAACGATAATTCTGTAAATTGAGGGTAAAACGGTAATT-TACAAA-TCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACT-G
* *
80139470 AGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAACTG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
* *
80139524 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATT-T-TAAAAATCG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT-AAACT-G
*
80139578 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA
80139629 TCGGGAGTAC
Statistics
Matches: 335, Mismatches: 31, Indels: 15
0.88 0.08 0.04
Matches are distributed among these distances:
52 2 0.01
53 51 0.15
54 275 0.82
55 6 0.02
56 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (54 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTG
Found at i:80139662 original size:81 final size:81
Alignment explanation
Indices: 80139201--80139631 Score: 577
Period size: 81 Copynumber: 5.3 Consensus size: 81
80139191 TTCACAATCA
* * * *
80139201 AGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAC-GATAATTTTGTAAA-CTGAGGGTAAAC
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAG-TAATTCTGTAAATC-GAGGGTAAAA
* *
80139264 CAGTAATTCTGTAAA-TCA
64 CGGTAATTCTGTAAACT-G
* * * * *
80139282 AGGGTAAAACGGTAATTTTACAAATTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACA
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
80139347 GTAATTCTGTAAACTG
66 GTAATTCTGTAAACTG
80139363 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAAC
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAAC
* *
80139427 GATAATTCTGTAAATTG
65 GGTAATTCTGTAAACTG
*
80139444 AGGGTAAAACGGTAATT-TACAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
80139508 GTAATTCTGTAAACTG
66 GTAATTCTGTAAACTG
* * * **
80139524 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACG
1 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
80139589 GTAATTCTATAAA-TCG
66 GTAATTCTGTAAACT-G
* *
80139605 AGGGTAAAACAGTAATTCTGTAAATCG
1 AGGGTAAAACGGTAATTCTATAAATCG
80139632 GGAGTACTTT
Statistics
Matches: 317, Mismatches: 26, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
80 77 0.24
81 237 0.75
82 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.26
Consensus pattern (81 bp):
AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
GTAATTCTGTAAACTG
Found at i:80143317 original size:17 final size:17
Alignment explanation
Indices: 80143295--80143327 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80143285 CTTTTCAACA
80143295 TCAAATCAAT-ACATATT
1 TCAAAT-AATCACATATT
80143312 TCAAATAATCACATAT
1 TCAAATAATCACATAT
80143328 AATCATACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
TCAAATAATCACATATT
Found at i:80143692 original size:21 final size:20
Alignment explanation
Indices: 80143636--80143692 Score: 51
Period size: 21 Copynumber: 2.7 Consensus size: 20
80143626 TAATTCCCTT
* *
80143636 TTTCTTTTCTTTTCTCTTTTC
1 TTTC-TTTCTATTCTATTTTC
* *
80143657 TTTATTTCTATTTCTATTTTG
1 TTTCTTTCTA-TTCTATTTTC
80143678 TTTCTATTCTATTCT
1 TTTCT-TTCTATTCT
80143693 TTCTTTCCTT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
20 5 0.17
21 19 0.66
22 5 0.17
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTCTTTCTATTCTATTTTC
Found at i:80143940 original size:22 final size:20
Alignment explanation
Indices: 80143915--80143961 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
80143905 ATATATATTT
*
80143915 TTTATAAATTAATATAATATAA
1 TTTATAAACTAA-ATAATAT-A
80143937 TTTAT-AACTAAATAATATA
1 TTTATAAACTAAATAATATA
80143956 TTTATA
1 TTTATA
80143962 TAGTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 6 0.26
20 7 0.30
21 5 0.22
22 5 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTATAAACTAAATAATATA
Found at i:80143948 original size:26 final size:25
Alignment explanation
Indices: 80143901--80143955 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
80143891 ATAATAATGT
* *
80143901 TATAATATATATTTTTTATAAATTAA
1 TATAATATATATTTATAATAAA-TAA
80143927 TATAATATA-ATTTATAACTAAATAA
1 TATAATATATATTTATAA-TAAATAA
80143952 TATA
1 TATA
80143956 TTTATATAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 13 0.50
26 13 0.50
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TATAATATATATTTATAATAAATAA
Found at i:80149902 original size:49 final size:49
Alignment explanation
Indices: 80149845--80150064 Score: 347
Period size: 49 Copynumber: 4.5 Consensus size: 49
80149835 TATGATATAC
* *
80149845 ATATATGTGTGATAAGGCCGT-ATGGCCAATGTGATGAATGTGAAAGTG-
1 ATATATATGTGATAAGGCC-TAATGGCCGATGTGATGAATGTGAAAGTGT
80149893 -TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
80149941 ATGTATATGTGATAAGGCCTAATGGCTGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
80149990 ATGTATATGTGATAAGGCCTAATGGCCGATGTGGTGAATGTGAAAGTGT
1 ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
80150039 ATATATATGTGATAAGGCCTAATGGC
1 ATATATATGTGATAAGGCCTAATGGC
80150065 TAATGTAAAA
Statistics
Matches: 162, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.01
47 43 0.27
49 118 0.73
ACGTcount: A:0.30, C:0.08, G:0.30, T:0.31
Consensus pattern (49 bp):
ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:80150216 original size:37 final size:37
Alignment explanation
Indices: 80150166--80150287 Score: 217
Period size: 37 Copynumber: 3.3 Consensus size: 37
80150156 GGAATATGTT
*
80150166 CCGGGTGAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
80150203 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
* *
80150240 CCGGGTAAGACCCAATGACTACGTGTGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
80150277 CCGGGTAAGAC
1 CCGGGTAAGAC
80150288 TTCGTAATAA
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.26, C:0.20, G:0.33, T:0.21
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGA
Found at i:80152131 original size:17 final size:17
Alignment explanation
Indices: 80152109--80152141 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80152099 TTTTTCAACA
80152109 TCAAATCAAT-ACATATT
1 TCAAAT-AATCACATATT
80152126 TCAAATAATCACATAT
1 TCAAATAATCACATAT
80152142 AATCATACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (17 bp):
TCAAATAATCACATATT
Found at i:80152707 original size:22 final size:20
Alignment explanation
Indices: 80152682--80152728 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
80152672 ATATATATTT
*
80152682 TTTATAAATTAATATCATATA
1 TTTATAAATTAA-ATAATATA
80152703 CTTTAT-AATTAAATAATATA
1 -TTTATAAATTAAATAATATA
80152723 TTTATA
1 TTTATA
80152729 TAGTTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 5 0.22
20 7 0.30
21 6 0.26
22 5 0.22
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTATAAATTAAATAATATA
Found at i:80160192 original size:47 final size:47
Alignment explanation
Indices: 80160141--80160467 Score: 496
Period size: 47 Copynumber: 7.0 Consensus size: 47
80160131 GATTTTATGA
*
80160141 GATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
80160188 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
*
80160235 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* *
80160282 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAAT-GCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
80160328 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* **
80160375 GATGAATGTGAACATGCATATATGTGAAAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
* * * ** * *
80160422 GATGAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATG
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
80160468 CGAAATGTGT
Statistics
Matches: 259, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
46 44 0.17
47 212 0.82
48 3 0.01
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:80160361 original size:140 final size:141
Alignment explanation
Indices: 80160141--80160467 Score: 496
Period size: 140 Copynumber: 2.3 Consensus size: 141
80160131 GATTTTATGA
*
80160141 GATGAATGTGAACATGCATATATGTGATAAGGCTGAATGGCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* *
80160206 TATACGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGA
66 TATACGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGAAAAGGCAGA
80160271 ATGGCCAATGT
131 ATGGCCAATGT
* *
80160282 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAAT-GCCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
* * *
80160346 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGAAAAGGTAGA
66 TATACGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGAAAAGGCAGA
80160411 ATGGCCAATGT
131 ATGGCCAATGT
* * * ** * *
80160422 GATGAACGTGGAA-GTGTATATATGTGGCAAAGCCGAATGGCTAATG
1 GATGAATGT-GAACATGCATATATGTGATAAGGCCGAATGGCCAATG
80160468 CGAAATGTGT
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
140 124 0.74
141 44 0.26
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (141 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCA
TATACGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATACGTGAAAAGGCAGA
ATGGCCAATGT
Found at i:80160500 original size:46 final size:46
Alignment explanation
Indices: 80160441--80160577 Score: 211
Period size: 46 Copynumber: 3.0 Consensus size: 46
80160431 GGAAGTGTAT
* *
80160441 ATATGTGGCAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
*
80160487 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * **
80160533 ATATGAGGTAAAGCCGAATGGCTAATGTGAGATACGTATGAGATG
1 ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
80160578 TGTATATATA
Statistics
Matches: 83, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.34, C:0.10, G:0.32, T:0.23
Consensus pattern (46 bp):
ATATGAGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:80182823 original size:22 final size:22
Alignment explanation
Indices: 80182792--80182834 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
80182782 GACAAAAAAT
*
80182792 ATGCTATTTTCTTTTTGTTTTA
1 ATGCTATTTTCTTGTTGTTTTA
*
80182814 ATGCTTTTTTCTTGTTGTTTT
1 ATGCTATTTTCTTGTTGTTTT
80182835 CTCCCTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.09, G:0.12, T:0.70
Consensus pattern (22 bp):
ATGCTATTTTCTTGTTGTTTTA
Found at i:80184845 original size:27 final size:27
Alignment explanation
Indices: 80184823--80184971 Score: 208
Period size: 27 Copynumber: 5.5 Consensus size: 27
80184813 AGTACCCTTA
* *
80184823 ATTTATTGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* *
80184850 ATTTACAGAGTTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
80184877 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* * *
80184904 ATTTATAGAATTATCGTTTTTCCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
*
80184931 ATTTACAGAATTACCATTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCG
* *
80184958 ATTTACAAAATTAC
1 ATTTATAGAATTAC
80184972 TGAAATACCA
Statistics
Matches: 108, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 108 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
ATTTATAGAATTACCATTTTACCCTCG
Found at i:80184908 original size:81 final size:81
Alignment explanation
Indices: 80184823--80184971 Score: 244
Period size: 81 Copynumber: 1.8 Consensus size: 81
80184813 AGTACCCTTA
* * * *
80184823 ATTTATTGAATTACCGTTTTACCCTCGATTTACAGAGTTACCATTTTACCCTCGATTTATAGAAT
1 ATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAAT
80184888 TACCATTTTACCCTCG
66 TACCATTTTACCCTCG
* *
80184904 ATTTATAGAATTATCGTTTTTCCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAAT
1 ATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAAT
80184969 TAC
66 TAC
80184972 TGAAATACCA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (81 bp):
ATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAAT
TACCATTTTACCCTCG
Found at i:80184990 original size:54 final size:54
Alignment explanation
Indices: 80184830--80185000 Score: 148
Period size: 54 Copynumber: 3.2 Consensus size: 54
80184820 TTAATTTATT
* * * * ** * *
80184830 GAATTACCGTTTTACCCTCGATTTACAGAGTTA-CCATTTTACCCTCGATTTATA
1 GAATTACCATTTTACCCTCGATTTACAAAATTATCGA-AATACCATCGATTTACA
* * *** * *
80184884 GAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTTCCCTCGATTTACA
1 GAATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCATCGATTTACA
* *
80184938 GAATTACCATTTTACCCTCGATTTACAAAATTA-CTGAAATACCATTGGTTTACA
1 GAATTACCATTTTACCCTCGATTTACAAAATTATC-GAAATACCATCGATTTACA
*
80184992 AAATTACCA
1 GAATTACCA
80185001 AAATACCCCT
Statistics
Matches: 98, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 96 0.98
55 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.38
Consensus pattern (54 bp):
GAATTACCATTTTACCCTCGATTTACAAAATTATCGAAATACCATCGATTTACA
Found at i:80184997 original size:81 final size:81
Alignment explanation
Indices: 80184831--80184999 Score: 205
Period size: 81 Copynumber: 2.1 Consensus size: 81
80184821 TAATTTATTG
* * * **
80184831 AATTACCGTTTTACCCTCGATTTACAGAGTTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATAA
* * *
80184896 TACCCTCGATTTATAG
66 TACCATCGATTTACAA
* * *
80184912 AATTATCGTTTTTCCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTGA-A
1 AATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTAC-CATA
* *
80184976 ATACCATTGGTTTACAA
65 ATACCATCGATTTACAA
80184993 AATTACC
1 AATTACC
80185000 AAAATACCCC
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 72 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.38
Consensus pattern (81 bp):
AATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCATAA
TACCATCGATTTACAA
Found at i:80185092 original size:27 final size:27
Alignment explanation
Indices: 80184964--80185226 Score: 194
Period size: 27 Copynumber: 9.8 Consensus size: 27
80184954 CTCGATTTAC
** ** **
80184964 AAAATTACTGAAATACCATTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
80184991 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
80185018 AAAATTACTAAAATACCACTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * *
80185045 AAAATTACGAAAATACTCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
80185072 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* * * * * *
80185099 GAAATTATCGAAAT-GCTCTCGATTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* **
80185126 AAAA-TATCAAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
* **
80185152 AAAATTACCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
* * **
80185179 AGAATTACCGAAATACCCCT-GTAGGGT
1 AAAATTACCAAAATACCCCTGGT-TTGT
*
80185206 AAAAATACCAAAATACCCCTG
1 AAAATTACCAAAATACCCCTG
80185227 TAGGGTAGAA
Statistics
Matches: 197, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
25 1 0.01
26 17 0.09
27 179 0.91
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:80185200 original size:54 final size:54
Alignment explanation
Indices: 80185135--80185269 Score: 225
Period size: 54 Copynumber: 2.5 Consensus size: 54
80185125 TAAAATATCA
*
80185135 AAATACCCCTGTAGGGTAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCG
*
80185189 AAATACCCCTGTAGGGTAAAAATACCAAAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCG
* * *
80185243 AGATACCCTTGTGGGGTAAAATTACCA
1 AAATACCCCTGTAGGGTAAAATTACCA
80185270 TTTTGCCCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.22
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAAAATTACCAAAATACCCCTGTAGGGTAGAATTACCG
Found at i:80185227 original size:27 final size:27
Alignment explanation
Indices: 80185124--80185269 Score: 195
Period size: 27 Copynumber: 5.4 Consensus size: 27
80185114 CTCTCGATTT
*
80185124 GTAAAA-TATCAAAATACCCCTGTAGG
1 GTAAAATTACCAAAATACCCCTGTAGG
*
80185150 GTAAAATTACCGAAATACCCCTGTAGG
1 GTAAAATTACCAAAATACCCCTGTAGG
* *
80185177 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAAAATTACCAAAATACCCCTGTAGG
*
80185204 GTAAAAATACCAAAATACCCCTGTAGG
1 GTAAAATTACCAAAATACCCCTGTAGG
* * * * *
80185231 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTGTAGG
80185258 GTAAAATTACCA
1 GTAAAATTACCA
80185270 TTTTGCCCCT
Statistics
Matches: 105, Mismatches: 14, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
26 6 0.06
27 99 0.94
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.23
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTGTAGG
Found at i:80185546 original size:24 final size:25
Alignment explanation
Indices: 80185470--80185539 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
80185460 AGGAAGTGGT
* *
80185470 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTATCA
* *
80185495 AAAAGGGTTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
80185520 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
80185540 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 37 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:80187912 original size:27 final size:27
Alignment explanation
Indices: 80187882--80188216 Score: 149
Period size: 27 Copynumber: 12.4 Consensus size: 27
80187872 AATGCCCTTA
* *
80187882 ATTTGTAAAATTACCAAAGTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* ***
80187909 ATTTATAGAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* * * **
80187936 ATTTACAGAGTTACCATTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* ** *
80187963 ATTTATAGAATTACCATTTTACCCTTG
1 ATTTATAAAATTACCAAATTACCCTCG
* * *** *
80187990 ATTTATAGAATTATCGTTTTTCCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* **
80188017 ATTTAAAAAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCAAATTACCCTCG
* * *
80188044 ATTTACAAAATTACTGAAA-TACCCTTG
1 ATTTATAAAATTAC-CAAATTACCCTCG
* * *
80188071 GTTTACAAAATTACCAAAATACCC-CTG
1 ATTTATAAAATTACCAAATTACCCTC-G
* ** * *
80188098 GTTCGTAAAATTACTAAAATACCACT-G
1 ATTTATAAAATTACCAAATTACC-CTCG
* * * * *
80188125 GTTTGTAAAATTACCAAAATACTCTTG
1 ATTTATAAAATTACCAAATTACCCTCG
** * *
80188152 GCTTGTAAAATTACCAAAATACCC-CTG
1 ATTTATAAAATTACCAAATTACCCTC-G
* * * *
80188179 ATTTGTGAAATTATCGAAA-TACTCTCG
1 ATTTATAAAATTA-CCAAATTACCCTCG
*
80188206 ATTTGTAAAAT
1 ATTTATAAAAT
80188217 ATCGAAATAC
Statistics
Matches: 254, Mismatches: 45, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
26 5 0.02
27 242 0.95
28 7 0.03
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (27 bp):
ATTTATAAAATTACCAAATTACCCTCG
Found at i:80187959 original size:54 final size:54
Alignment explanation
Indices: 80187901--80188057 Score: 224
Period size: 54 Copynumber: 2.9 Consensus size: 54
80187891 ATTACCAAAG
* *
80187901 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAGTTACCATTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* * * *
80187955 TACCCTCGATTTATAGAATTACCATTTTACCCTTGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
* * * *
80188009 TTCCCTCGATTTAAAAAATTACCATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTAC
80188058 TGAAATACCC
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 90 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
Found at i:80188067 original size:81 final size:80
Alignment explanation
Indices: 80187888--80188085 Score: 243
Period size: 81 Copynumber: 2.4 Consensus size: 80
80187878 CTTAATTTGT
* * * *
80187888 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAGTTACCAT
1 AAAATTACCAAA-TACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTAAAAAATTACCAT
*
80187953 TTTACCCTCGATTTAT
65 TTTACCCTCGATTTAC
* ** * *
80187969 AGAATTACCATTTTACCCTTGATTTATAGAATTATCGTTTTTCCCTCGATTTAAAAAATTACCAT
1 AAAATTACCA-AATACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTAAAAAATTACCAT
80188034 TTTACCCTCGATTTAC
65 TTTACCCTCGATTTAC
* * * *
80188050 AAAATTACTGAAATACCCTTGGTTTACAAAATTACC
1 AAAATTAC-CAAATACCCTTGATTTATAGAATTACC
80188086 AAAATACCCC
Statistics
Matches: 97, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
81 96 0.99
82 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (80 bp):
AAAATTACCAAATACCCTTGATTTATAGAATTACCGTTTTACCCTCGATTTAAAAAATTACCATT
TTACCCTCGATTTAC
Found at i:80188160 original size:54 final size:53
Alignment explanation
Indices: 80188050--80188203 Score: 175
Period size: 54 Copynumber: 2.8 Consensus size: 53
80188040 CTCGATTTAC
* ** * *
80188050 AAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTCGT
1 AAAATTACTAAAATACCC-TGGTTTGTAAAATTACCAAAATACTCTTGGTTCGT
80188104 AAAATTACTAAAATACCACTGGTTTGTAAAATTACCAAAATACTCTTGGCTT-GT
1 AAAATTACTAAAATACC-CTGGTTTGTAAAATTACCAAAATACTCTTGG-TTCGT
* * * * *
80188158 AAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAATACTCT
1 AAAATTACTAAAATA-CCCTGGTTTGTAAAATTACCAAAATACTCT
80188204 CGATTTGTAA
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
54 82 0.94
55 5 0.06
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (53 bp):
AAAATTACTAAAATACCCTGGTTTGTAAAATTACCAAAATACTCTTGGTTCGT
Found at i:80188211 original size:81 final size:80
Alignment explanation
Indices: 80188039--80188231 Score: 201
Period size: 81 Copynumber: 2.4 Consensus size: 80
80188029 ACCATTTTAC
** ** * *
80188039 CCTCGATTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTCGT
1 CCTCGATTTGTAAAATTACCAAAATACCCTTGGCTTACAAAATTACCAAAATACCCCTGATTCGT
80188104 AAAATTACTAAAATA
66 AAAATTACTAAAATA
* * * ** *
80188119 CCACTGGTTTGTAAAATTACCAAAATACTCTTGGCTTGTAAAATTACCAAAATACCCCTGATTTG
1 CCTC-GATTTGTAAAATTACCAAAATACCCTTGGCTTACAAAATTACCAAAATACCCCTGATTCG
* *
80188184 TGAAATTA-TCGAAATA
65 TAAAATTACT-AAAATA
* *
80188200 CTCTCGATTTGTAAAA-TATCGAAATACCCTTG
1 C-CTCGATTTGTAAAATTACCAAAATACCCTTG
80188232 TAGGGTAGAA
Statistics
Matches: 91, Mismatches: 19, Indels: 6
0.78 0.16 0.05
Matches are distributed among these distances:
80 17 0.19
81 72 0.79
82 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (80 bp):
CCTCGATTTGTAAAATTACCAAAATACCCTTGGCTTACAAAATTACCAAAATACCCCTGATTCGT
AAAATTACTAAAATA
Found at i:80188260 original size:27 final size:27
Alignment explanation
Indices: 80188219--80188381 Score: 236
Period size: 27 Copynumber: 6.0 Consensus size: 27
80188209 TGTAAAATAT
*
80188219 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
80188246 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
80188273 CGAAATACCCCTATAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * *
80188300 CGAAATACCCTTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
80188327 CAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
80188354 CGAGATACCCTTGTGGGGTAAAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
80188381 C
1 C
80188382 ATTTTGCCCC
Statistics
Matches: 121, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:80188621 original size:25 final size:24
Alignment explanation
Indices: 80188583--80188652 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
80188573 AGGAAGTGGT
* *
80188583 AAAAGGGCTATGCCTCAGTTTACCG
1 AAAAGGGCTTTGCC-CAGTTTACCA
* *
80188608 AAAAGGGTTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCC-AGTTTACCA
80188633 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTG-CCCAGTT
80188653 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
24 1 0.03
25 34 0.89
26 3 0.08
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCAGTTTACCA
Found at i:80191039 original size:27 final size:27
Alignment explanation
Indices: 80191020--80191149 Score: 190
Period size: 27 Copynumber: 4.8 Consensus size: 27
80191010 ATTACCAAAG
*
80191020 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
80191047 TACCCTCGATTTACAGAGTTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* *
80191074 TACCCTCGATTTATAGAGTTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
80191101 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
80191128 TACCC-CTGATTTACAAAATTAC
1 TACCCTC-GATTTACAGAATTAC
80191150 TAAAATACCC
Statistics
Matches: 96, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
26 1 0.01
27 95 0.99
ACGTcount: A:0.28, C:0.25, G:0.09, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:80191069 original size:54 final size:54
Alignment explanation
Indices: 80191009--80191186 Score: 160
Period size: 54 Copynumber: 3.3 Consensus size: 54
80190999 CAATTTGTAA
*
80191009 AATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAG
1 AATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
* *** * * *
80191063 AGTTACCATTTTACCCTCGATTTATAGAGTTACCATTTTACCCTCGATTTATAG
1 AATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
*** * * *** * * *
80191117 AATTACCATTTTACCC-CTGATTTACAAAATTACTAAAATACCCTTGGTTTACAA
1 AATTACCAAAGTACCCTC-GATTTACAGAATTACCATTTTACCCTCGATTTACAG
*
80191171 AATTACCAAAATACCC
1 AATTACCAAAGTACCC
80191187 CTAGTTTGTA
Statistics
Matches: 100, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
53 1 0.01
54 99 0.99
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.34
Consensus pattern (54 bp):
AATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAG
Found at i:80191159 original size:81 final size:81
Alignment explanation
Indices: 80190975--80191186 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 81
80190965 AATACTTTAG
* * *
80190975 TTTACCAAATTACTAAAATGCCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATT
1 TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
*
80191040 ACCGTTTTACCCTCGA
66 ACCATTTTACCCTCGA
* * * *** * * * *** *
80191056 TTTACAGAGTTACCATTTTACCCTCGATTTATAGAGTTACCATTTTACCCTCGATTTATAGAATT
1 TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
80191121 ACCATTTTACCC-CTGA
66 ACCATTTTACCCTC-GA
*** * *
80191137 TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC
1 TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCC
80191187 CTAGTTTGTA
Statistics
Matches: 99, Mismatches: 31, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
80 1 0.01
81 98 0.99
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATT
ACCATTTTACCCTCGA
Found at i:80191276 original size:27 final size:27
Alignment explanation
Indices: 80191128--80191308 Score: 170
Period size: 27 Copynumber: 6.7 Consensus size: 27
80191118 ATTACCATTT
** *
80191128 TACCCCTGATTTACAAAATTACTAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
* * **
80191155 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
*
80191182 TACCCCT-AGTTTGTAAAATTACTAAAA
1 TACCCCTGA-TTTGTAAAATTACCAAAA
* * *
80191209 TACGCTTGGTTTGTAAAATTACCAAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
*
80191236 TACCCCT-AGCTTGTAAAATTACCAAAA
1 TACCCCTGA-TTTGTAAAATTACCAAAA
* * *
80191263 TACCCCTGATTTGTGAAATTATCGAAA
1 TACCCCTGATTTGTAAAATTACCAAAA
*
80191290 TA-CTCTCGATTTGTAAAAT
1 TACCCCT-GATTTGTAAAAT
80191309 ATCGAAATAC
Statistics
Matches: 127, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 3 0.02
27 123 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
TACCCCTGATTTGTAAAATTACCAAAA
Found at i:80191276 original size:54 final size:54
Alignment explanation
Indices: 80191142--80191292 Score: 212
Period size: 54 Copynumber: 2.8 Consensus size: 54
80191132 CCTGATTTAC
** *
80191142 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGT
*
80191196 AAAATTACTAAAATACGCTTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGT
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGT
* * * * * *
80191250 AAAATTACCAAAATACCCCTGATTTGTGAAATTATCGAAATAC
1 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATAC
80191293 TCTCGATTTG
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 86 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (54 bp):
AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGT
Found at i:80191303 original size:81 final size:81
Alignment explanation
Indices: 80191142--80191308 Score: 203
Period size: 81 Copynumber: 2.1 Consensus size: 81
80191132 CCTGATTTAC
* * * *
80191142 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAA
1 AAAATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAA
* *
80191207 AATACGCTTGGTTTGT
66 AATACGCTCGATTTGT
** *
80191223 AAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAAAATACCCCT-GATTTGTGAAATTA-TC
1 AAAATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACT-
* *
80191286 GAAATACTCTCGATTTGT
64 AAAATACGCTCGATTTGT
80191304 AAAAT
1 AAAAT
80191309 ATCGAAATAC
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
80 2 0.03
81 71 0.97
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTAGCTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAA
AATACGCTCGATTTGT
Found at i:80191383 original size:27 final size:27
Alignment explanation
Indices: 80191311--80191506 Score: 259
Period size: 27 Copynumber: 7.3 Consensus size: 27
80191301 TGTAAAATAT
*
80191311 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
80191338 CGAAATA-CCCTACAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* *
80191364 CGAAATACCCCTATAGGGTAGAATTAT
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
80191391 CGAAATACCCTTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
80191418 TGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
* * * *
80191445 CGAACTACCCTTGTAGGGTAAAAATAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
**
80191472 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAATTAC
*
80191499 CGAGATAC
1 CGAAATAC
80191507 TCTTGTGTGT
Statistics
Matches: 144, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 23 0.16
27 121 0.84
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAATTAC
Found at i:80191429 original size:54 final size:54
Alignment explanation
Indices: 80191312--80191512 Score: 287
Period size: 54 Copynumber: 3.7 Consensus size: 54
80191302 GTAAAATATC
* ** *
80191312 GAAATACCCTTGTAGGGTAGAATTACCGAAATACCC-TACAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACT
* *
80191365 GAAATACCCCTATAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACT
* * *
80191419 GAAATACCCCTGTAGGGTAGAATTACCGAACTACCCTTGTAGGGTAAAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACT
* * *
80191473 AAAATACCCCTGTAGGGTAGAATTACCGAGATACTCTTGT
1 GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGT
80191513 GTGTTAAAAT
Statistics
Matches: 132, Mismatches: 15, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
53 33 0.25
54 99 0.75
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
GAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAATTACT
Found at i:80191767 original size:25 final size:25
Alignment explanation
Indices: 80191729--80191798 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
80191719 AGGAAGTGGT
* *
80191729 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
80191754 AGAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
80191779 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
80191799 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:80194941 original size:40 final size:39
Alignment explanation
Indices: 80194830--80194943 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 39
80194820 TTAATCACGT
* * *
80194830 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
80194870 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
*
80194910 GCACAATTGCCTTCGGGTCTTAACCCGGATATAA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAA
80194944 TTTCCAGCAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.03
40 61 0.97
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:80196281 original size:11 final size:10
Alignment explanation
Indices: 80196265--80196289 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80196255 AGGATGAACA
80196265 TTTTTTTTTC
1 TTTTTTTTTC
80196275 TTTTTTTTTC
1 TTTTTTTTTC
80196285 TTTTT
1 TTTTT
80196290 CATATTCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:80202938 original size:40 final size:39
Alignment explanation
Indices: 80202827--80202977 Score: 142
Period size: 40 Copynumber: 3.8 Consensus size: 39
80202817 TTAATCACGT
* * *
80202827 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* * *
80202867 GCACGAATGCCTTCGGGCCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *** *
80202907 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATATAACAACTA
* *
80202947 GCATAATTGTCTTCGGG-CTTAGCCCGGATAT
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAT
80202978 CATTCAATTT
Statistics
Matches: 93, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
39 15 0.16
40 78 0.84
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATATAACAACTA
Found at i:80202961 original size:80 final size:79
Alignment explanation
Indices: 80202827--80202977 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 79
80202817 TTAATCACGT
*
80202827 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGCCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGG-CTTAGCC
80202892 CGGATATAGCCACTA
65 CGGATATAGCCACTA
* * ** * *
80202907 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGCTTAGC
80202970 CCGGATAT
64 CCGGATAT
80202978 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
79 17 0.27
80 45 0.73
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (79 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATAACTCGCACGAATGCCTTCGGGCTTAGCCC
GGATATAGCCACTA
Found at i:80204282 original size:11 final size:11
Alignment explanation
Indices: 80204266--80204291 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
80204256 AGGATGAACA
80204266 TTTTTTTTTCT
1 TTTTTTTTTCT
80204277 TTTTTTTTTCT
1 TTTTTTTTTCT
80204288 TTTT
1 TTTT
80204292 CATATTCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:80205345 original size:23 final size:26
Alignment explanation
Indices: 80205308--80205364 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
80205298 TGGTCATTAT
*
80205308 AGAATTCACTTTACAAA-T-TTTTTAG
1 AGAATTCAC-TTACAAAGTCTTTATAG
80205333 AGAATTCAC-TACAAAGTCTTTATAG
1 AGAATTCACTTACAAAGTCTTTATAG
80205358 AGAATTC
1 AGAATTC
80205365 GCATAGAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 6 0.21
24 1 0.03
25 22 0.76
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.37
Consensus pattern (26 bp):
AGAATTCACTTACAAAGTCTTTATAG
Found at i:80211872 original size:46 final size:46
Alignment explanation
Indices: 80211805--80211980 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
80211795 TGTAACCTGC
* *
80211805 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* * *
80211851 CCATAAGTGAACTAGGACTCAACTCAACGAGCTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-G--GAC-A-TTCGCAT
* * *
80211901 CTC-TCA---AACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
80211944 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
80211981 TGCCCAAACA
Statistics
Matches: 107, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.07
44 2 0.02
46 60 0.56
47 23 0.21
49 2 0.02
50 7 0.07
51 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:80211926 original size:93 final size:93
Alignment explanation
Indices: 80211814--80211984 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
80211804 CCCATAAGCG
*
80211814 AACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTAGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAAC
80211879 GAGCTCAGATGCCTAGTTACATCTCTCA
66 GAGCTCAGATGCCTAGTTACATCTCTCA
* * *
80211907 AACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAAC
* *
80211972 GAGTTCGGATGCC
66 GAGCTCAGATGCC
80211985 CAAACATCCT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTAGGACTCAACTCAAC
GAGCTCAGATGCCTAGTTACATCTCTCA
Found at i:80217487 original size:25 final size:25
Alignment explanation
Indices: 80217445--80217514 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
80217435 CTGTACATGT
*
80217445 ATGCTCACACGAGTTGTGAATCAGA
1 ATGCTCACACGAGATGTGAATCAGA
* *
80217470 ATGCTCACATGAGCTGTGAATCAGA
1 ATGCTCACACGAGATGTGAATCAGA
*
80217495 ATGCGCACACGAGATGTGAA
1 ATGCTCACACGAGATGTGAA
80217515 AATGGGCCTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (25 bp):
ATGCTCACACGAGATGTGAATCAGA
Found at i:80223662 original size:27 final size:27
Alignment explanation
Indices: 80223632--80223712 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
80223622 AATCTCATAT
* **
80223632 CTATAGGCTAGTATTGTTGAAATACCC
1 CTATAGGCTAGAATTACTGAAATACCC
* *
80223659 CTATAGGGTAGAATTACTGAAATGCCC
1 CTATAGGCTAGAATTACTGAAATACCC
* * *
80223686 CTGTAGGATAGAATTACTAAAATACCC
1 CTATAGGCTAGAATTACTGAAATACCC
80223713 TTGGTTTACA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (27 bp):
CTATAGGCTAGAATTACTGAAATACCC
Found at i:80223939 original size:81 final size:81
Alignment explanation
Indices: 80223697--80223980 Score: 231
Period size: 81 Copynumber: 3.5 Consensus size: 81
80223687 TGTAGGATAG
* * * * *** **
80223697 AATTACTAAAATACCCTTGGTTTACAAAATTACTG-AATACCCTTGGTTT-GTAAATTACCAAAA
1 AATTACCAAAATACCCTTGATTTGCAAAATTACAGAAATACCCTCAATTTACAAAATTACCAAAA
* **
80223760 TACCCTA-ATCTGTGA
66 TACCCTAGATTTGAAA
* * * * * *
80223775 AATTACCGAAATACCCTCGACTTGTAAAATTACCGAAATACCCTCAATTTATAAAATTACCAAAA
1 AATTACCAAAATACCCTTGATTTGCAAAATTACAGAAATACCCTCAATTTACAAAATTACCAAAA
*
80223840 TACCCTAGATTTGGAA
66 TACCCTAGATTTGAAA
* * *
80223856 AATTACCAAAATACCCTTGATTTG-AGAAATTACAAAAATACCCT-GATTTACAAAATTA-TAGA
1 AATTACCAAAATACCCTTGATTTGCA-AAATTACAGAAATACCCTCAATTTACAAAATTACCA-A
** *
80223918 AATACCCTTTACTTTTAAA
64 AATACCCTAGA-TTTGAAA
* * *
80223937 AATTA-CAGAAATACCATTGGTTTGCAAAATTGCAGAAATACCCT
1 AATTACCA-AAATACCCTTGATTTGCAAAATTACAGAAATACCCT
80223981 TGGTTTGTGG
Statistics
Matches: 166, Mismatches: 32, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
78 27 0.16
79 12 0.07
80 44 0.27
81 82 0.49
82 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCTTGATTTGCAAAATTACAGAAATACCCTCAATTTACAAAATTACCAAAA
TACCCTAGATTTGAAA
Found at i:80223983 original size:27 final size:27
Alignment explanation
Indices: 80223697--80223987 Score: 195
Period size: 27 Copynumber: 10.9 Consensus size: 27
80223687 TGTAGGATAG
* *
80223697 AATTACTA-AAATACCCTTGGTTTACAA
1 AATTAC-AGAAATACCCTTGATTTGCAA
* * *
80223724 AATTACTG-AATACCCTTGGTTTG-TA
1 AATTACAGAAATACCCTTGATTTGCAA
* * **
80223749 AATTACCA-AAATACCC-TAATCTGTGA
1 AATTA-CAGAAATACCCTTGATTTGCAA
* * * *
80223775 AATTACCGAAATACCCTCGACTTGTAA
1 AATTACAGAAATACCCTTGATTTGCAA
* ** **
80223802 AATTACCGAAATACCCTCAATTTATAA
1 AATTACAGAAATACCCTTGATTTGCAA
* *
80223829 AATTACCA-AAATACCCTAGATTTGGAA
1 AATTA-CAGAAATACCCTTGATTTGCAA
80223856 AATTACCA-AAATACCCTTGATTTG-AGA
1 AATTA-CAGAAATACCCTTGATTTGCA-A
* *
80223883 AATTACAAAAATACCC-TGATTTACAA
1 AATTACAGAAATACCCTTGATTTGCAA
* * **
80223909 AATTATAGAAATACCCTTTACTTTTAAA
1 AATTACAGAAATACCCTTGA-TTTGCAA
* *
80223937 AATTACAGAAATACCATTGGTTTGCAA
1 AATTACAGAAATACCCTTGATTTGCAA
* *
80223964 AATTGCAGAAATACCCTTGGTTTG
1 AATTACAGAAATACCCTTGATTTG
80223988 TGGATTTACC
Statistics
Matches: 215, Mismatches: 37, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
25 11 0.05
26 60 0.28
27 122 0.57
28 22 0.10
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
AATTACAGAAATACCCTTGATTTGCAA
Found at i:80224298 original size:41 final size:42
Alignment explanation
Indices: 80224246--80224367 Score: 160
Period size: 41 Copynumber: 3.0 Consensus size: 42
80224236 TGGAGGAAGA
80224246 AATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACT-
1 AATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTC
* * * *
80224287 GATTGAA-GATCGCATGATTGCTTGATGACCGTGGAT-CAATC
1 AATT-AAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTC
* *
80224328 AATTAAGGATCACATGGTTGCTTGTCGACCGTGGATCCAC
1 AATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
80224368 CGATGGCTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
40 5 0.07
41 58 0.87
42 4 0.06
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (42 bp):
AATTAAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTC
Found at i:80228466 original size:30 final size:31
Alignment explanation
Indices: 80228426--80228488 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 31
80228416 CCTTTTCATA
80228426 TTTCACATTTCATAACACTGGGCCAAAGCCT
1 TTTCACATTTCATAACACTGGGCCAAAGCCT
** *
80228457 TTTCA-ATTTCATATTACTGGGCCGAAGCCT
1 TTTCACATTTCATAACACTGGGCCAAAGCCT
80228487 TT
1 TT
80228489 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (31 bp):
TTTCACATTTCATAACACTGGGCCAAAGCCT
Found at i:80228758 original size:24 final size:24
Alignment explanation
Indices: 80228679--80228819 Score: 209
Period size: 24 Copynumber: 6.0 Consensus size: 24
80228669 GCTTTATCAT
*
80228679 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
80228704 ATAACTGGGGCA-AAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
80228726 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
80228750 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80228774 ATAACTGGGGCA-AAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80228797 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80228820 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 3, Indels: 9
0.90 0.02 0.07
Matches are distributed among these distances:
22 12 0.11
23 38 0.35
24 51 0.47
25 8 0.07
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80228766 original size:47 final size:47
Alignment explanation
Indices: 80228678--80228819 Score: 209
Period size: 47 Copynumber: 3.0 Consensus size: 47
80228668 TGCTTTATCA
*
80228678 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGC-AAAGCCCTTT
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTT
*
80228725 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAAAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTT
*
80228772 TAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
1 T-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTT
80228819 T
1 T
80228820 GCACTTCCTC
Statistics
Matches: 88, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
46 20 0.23
47 56 0.64
48 12 0.14
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (47 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTT
Found at i:80228891 original size:9 final size:9
Alignment explanation
Indices: 80228877--80228933 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
80228867 ATCTCGTGTG
80228877 CATATCATA
1 CATATCATA
*
80228886 CATATCATGTG
1 CATATCA--TA
80228897 CATATCATA
1 CATATCATA
* *
80228906 CATGTCATGTG
1 CATATCA--TA
80228917 CATATCATA
1 CATATCATA
80228926 CATATCAT
1 CATATCAT
80228934 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:80228896 original size:20 final size:20
Alignment explanation
Indices: 80228873--80228935 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
80228863 GAACATCTCG
80228873 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
80228893 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
80228913 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80228933 TGT
1 TGT
80228936 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:80228999 original size:25 final size:25
Alignment explanation
Indices: 80228971--80229018 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80228961 CATATATAAC
* * *
80228971 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
80228996 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
80229019 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:80234189 original size:74 final size:72
Alignment explanation
Indices: 80234030--80234198 Score: 295
Period size: 74 Copynumber: 2.3 Consensus size: 72
80234020 CGATTTGTCT
80234030 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGAGCTACATTT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTA-AGCTACATTT
80234095 ATCTTTCA
65 ATCTTTCA
80234103 CGTAGCTCTCTTGTCTACATGGTGTCTTCCTTCACTTGGAATCACGCATGCGACCT-AGCTACAT
1 CGTAGCTCTCTTGTCTACATGGTG---TCCTTCACTTGGAATCACGCATGCGACCTAAGCTACAT
80234167 TTATCTTTCA
63 TTATCTTTCA
80234177 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80234199 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
73 24 0.26
74 40 0.43
76 29 0.31
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.36
Consensus pattern (72 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAAGCTACATTTA
TCTTTCA
Found at i:80241700 original size:71 final size:71
Alignment explanation
Indices: 80241614--80241777 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80241604 CGATTTGTCT
80241614 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80241679 CTTTCA
66 CTTTCA
80241685 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80241750 CTTTCA
66 CTTTCA
80241756 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80241778 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80241815 original size:71 final size:70
Alignment explanation
Indices: 80241614--80241811 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
80241604 CGATTTGTCT
* * * *
80241614 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
80241679 CTTTCA
65 CTTTCA
* * * *
80241685 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
80241750 CTTTCA
65 CTTTCA
* *
80241756 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
80241812 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80245817 original size:23 final size:24
Alignment explanation
Indices: 80245741--80245860 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
80245731 GCTTTATCAT
*
80245741 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
80245766 ATAACTAGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
80245791 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80245814 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80245838 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80245861 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 3, Indels: 11
0.86 0.03 0.11
Matches are distributed among these distances:
23 24 0.28
24 34 0.39
25 23 0.26
26 6 0.07
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80245847 original size:47 final size:47
Alignment explanation
Indices: 80245762--80245859 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
80245752 CCTAGCCTCT
80245762 TTTAATAACTAGGGCAAAGCCCTTTTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTAGGGCAAAGCCC-TTTTTAATAACTGGGGCATAAGCCC
*
80245810 TTTAATAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTAGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCC
80245857 TTT
1 TTT
80245860 TGCACTTCCT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
47 27 0.56
48 15 0.31
49 6 0.12
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (47 bp):
TTTAATAACTAGGGCAAAGCCCTTTTTAATAACTGGGGCATAAGCCC
Found at i:80245932 original size:9 final size:9
Alignment explanation
Indices: 80245918--80245974 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
80245908 ATCTCGTGTG
80245918 CATATCATA
1 CATATCATA
*
80245927 CATATCATGTG
1 CATATCA--TA
80245938 CATATCATA
1 CATATCATA
* *
80245947 CATGTCATGTG
1 CATATCA--TA
80245958 CATATCATA
1 CATATCATA
80245967 CATATCAT
1 CATATCAT
80245975 GTTTACCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:80245937 original size:20 final size:20
Alignment explanation
Indices: 80245914--80245976 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
80245904 GAACATCTCG
80245914 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
80245934 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
80245954 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
80245974 TGT
1 TGT
80245977 TTACCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:80246041 original size:25 final size:25
Alignment explanation
Indices: 80246013--80246060 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80246003 ATATATAAAC
* * *
80246013 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
80246038 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
80246061 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:80248817 original size:48 final size:48
Alignment explanation
Indices: 80248744--80248961 Score: 164
Period size: 48 Copynumber: 4.6 Consensus size: 48
80248734 AATTAAAGCA
* * *
80248744 CCAATGCCATGTCCTCGATATGGTCTTACATGAATCCACATATCATCG
1 CCAATGCCATGTCCTAGACAGGGTCTTACATGAATCCACATATCATCG
* *
80248792 CCAATTCCATGTCCTAGACAGGGTCTTACATGAATCCACATATCATTG
1 CCAATGCCATGTCCTAGACAGGGTCTTACATGAATCCACATATCATCG
** * * * *
80248840 CTGATGCCA---CC-AGACATGGTCTTACACTG--GCACATATATCATTG
1 CCAATGCCATGTCCTAGACAGGGTCTTACA-TGAATC-CACATATCATCG
* * * * * *
80248884 CCGATGCCATGTCCCAGATATGGTCTTACACTG--GCACATATATCATCG
1 CCAATGCCATGTCCTAGACAGGGTCTTACA-TGAATC-CACATATCATCG
* * *
80248932 CCGATGCCATGTCCCAGACATGGTCTTACA
1 CCAATGCCATGTCCTAGACAGGGTCTTACA
80248962 CAGGCACATT
Statistics
Matches: 149, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
43 1 0.01
44 33 0.22
45 4 0.03
47 2 0.01
48 109 0.73
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
CCAATGCCATGTCCTAGACAGGGTCTTACATGAATCCACATATCATCG
Found at i:80248962 original size:48 final size:48
Alignment explanation
Indices: 80248783--80249018 Score: 268
Period size: 48 Copynumber: 5.0 Consensus size: 48
80248773 ATGAATCCAC
* * * * * *
80248783 ATATCATCGCCAATTCCATGTCCTAGACAGGGTCTTACA-T-GAATCCAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA--CAT
* *
80248831 ATATCATTGCTGATGCCA----CCAGACATGGTCTTACACTGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
* *
80248875 ATATCATTGCCGATGCCATGTCCCAGATATGGTCTTACACTGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
*
80248923 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
* ** * *
80248971 TTATCATCGCCGATGTGATGTCCCAGACATGGTTTTACACAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
80249019 TTAGCACGGT
Statistics
Matches: 165, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
44 34 0.21
45 1 0.01
46 2 0.01
48 128 0.78
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (48 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
Found at i:80254838 original size:40 final size:40
Alignment explanation
Indices: 80254769--80254906 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 40
80254759 GTTATGGTAA
* * * * * *
80254769 CGGGACTTAACCCGGATATCACGATTTGCACAAACGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* *
80254809 CGGGTCTTAGCCCGGATTTAACAACTTGCACGAATGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
* * * * *
80254849 CGGGTCTTAGCCCGGATATAGCTACTAGAACAATTGCCTT
1 CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
*
80254889 CGGGTCTTAACCCGGATA
1 CGGGTCTTAGCCCGGATA
80254907 AAATTTTCAG
Statistics
Matches: 82, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CGGGTCTTAGCCCGGATATAACAACTTGCACAAATGCCTT
Found at i:80276289 original size:14 final size:13
Alignment explanation
Indices: 80276266--80276297 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
80276256 AGGATATCAA
80276266 AACAATAATTAAG
1 AACAATAATTAAG
80276279 AACACATAATTAAG
1 AACA-ATAATTAAG
80276293 AACAA
1 AACAA
80276298 GTTAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:80279622 original size:49 final size:49
Alignment explanation
Indices: 80279563--80279685 Score: 203
Period size: 49 Copynumber: 2.5 Consensus size: 49
80279553 CTAGTACGCA
* *
80279563 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATTCGGTGCACG
1 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACG
* *
80279612 TAGTATCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACG
80279661 TAGTAGCCTGCACTTAG-ACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
80279686 CGTAACCTCA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
48 8 0.12
49 61 0.88
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATACGACCAATTATCCGGTACACG
Found at i:80283159 original size:18 final size:19
Alignment explanation
Indices: 80283136--80283180 Score: 56
Period size: 21 Copynumber: 2.3 Consensus size: 19
80283126 TTAAAAGCTT
80283136 GTAATATAAAC-AATAATA
1 GTAATATAAACGAATAATA
80283154 GTAATAGATAAACGAATAATA
1 GTAAT--ATAAACGAATAATA
*
80283175 ATAATA
1 GTAATA
80283181 GGTAAACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 5 0.22
19 1 0.04
20 6 0.26
21 11 0.48
ACGTcount: A:0.60, C:0.04, G:0.09, T:0.27
Consensus pattern (19 bp):
GTAATATAAACGAATAATA
Found at i:80283173 original size:21 final size:20
Alignment explanation
Indices: 80283141--80283189 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
80283131 AGCTTGTAAT
*
80283141 ATAAACAATAATAGTAATAG
1 ATAAACAATAATAATAATAG
80283161 ATAAACGAATAATAATAATAG
1 ATAAAC-AATAATAATAATAG
*
80283182 GTAAACAA
1 ATAAACAA
80283190 ATTCGAAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.61, C:0.06, G:0.10, T:0.22
Consensus pattern (20 bp):
ATAAACAATAATAATAATAG
Found at i:80289606 original size:95 final size:95
Alignment explanation
Indices: 80289455--80289687 Score: 344
Period size: 95 Copynumber: 2.5 Consensus size: 95
80289445 TACATGAAAC
* * * *
80289455 CACATAT-CATCGTCGATGCCATGTCCCAGACATGGTCTTACAGTGACACATGTATCATCGCTGA
1 CACATATACATCGCCGATGCCATGTCCCAGACATGGTCTTACAGTGACACATATATCATCACCGA
* *
80289519 TGCCATGTCCCAGACATGGTCTTACACTGG
66 TGCCATGTCCCAGACATGGTCTCACACAGG
* *
80289549 CACATATAACATCGCCGATG-CATGTCCCAGACATGGTCTTACATTGGCACATATATCATCACCG
1 CACATAT-ACATCGCCGATGCCATGTCCCAGACATGGTCTTACAGTGACACATATATCATCACCG
80289613 ATGCCATGTCCCAGACATGGTCTCACACAGG
65 ATGCCATGTCCCAGACATGGTCTCACACAGG
* *
80289644 CACATTTATCATCGCCGATGCCATGTCCCAAACATGGTCTTACA
1 CACATATA-CATCGCCGATGCCATGTCCCAGACATGGTCTTACA
80289688 CAGCTACATT
Statistics
Matches: 125, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
94 8 0.06
95 85 0.68
96 32 0.26
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (95 bp):
CACATATACATCGCCGATGCCATGTCCCAGACATGGTCTTACAGTGACACATATATCATCACCGA
TGCCATGTCCCAGACATGGTCTCACACAGG
Found at i:80289690 original size:48 final size:48
Alignment explanation
Indices: 80289458--80289688 Score: 347
Period size: 48 Copynumber: 4.8 Consensus size: 48
80289448 ATGAAACCAC
* * *
80289458 ATATCATCGTCGATGCCATGTCCCAGACATGGTCTTACAGTGACACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
* *
80289506 GTATCATCGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
* *
80289554 ATAACATCGCCGATG-CATGTCCCAGACATGGTCTTACATTGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
* * *
80289601 ATATCATCACCGATGCCATGTCCCAGACATGGTCTCACACAGGCACAT
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
* *
80289649 TTATCATCGCCGATGCCATGTCCCAAACATGGTCTTACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
80289689 AGCTACATTT
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
47 44 0.27
48 120 0.73
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACAT
Found at i:80304993 original size:19 final size:19
Alignment explanation
Indices: 80304969--80305008 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
80304959 TATGTATGTA
80304969 TATTATAAAAAGGTACTTC
1 TATTATAAAAAGGTACTTC
80304988 TATTATAAAAAGGTACTTC
1 TATTATAAAAAGGTACTTC
80305007 TA
1 TA
80305009 CAAATGGTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (19 bp):
TATTATAAAAAGGTACTTC
Found at i:80307719 original size:23 final size:22
Alignment explanation
Indices: 80307683--80307727 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
80307673 TATATCCATA
* *
80307683 CCAAATCATGCCAAATCATATG
1 CCAAATCATACCAAAACATATG
80307705 CCAAAGTCATACCAAAACATATG
1 CCAAA-TCATACCAAAACATATG
80307728 TTTCATAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.44, C:0.27, G:0.09, T:0.20
Consensus pattern (22 bp):
CCAAATCATACCAAAACATATG
Found at i:80308567 original size:43 final size:43
Alignment explanation
Indices: 80308448--80308618 Score: 170
Period size: 43 Copynumber: 4.0 Consensus size: 43
80308438 AGCTCATACA
80308448 ATGCC-ATCGTCCCAGACATGGTCTTACATGT-AATCAAATATCG
1 ATGCCAAT-GTCCCAGACATGGTCTTACATGTAAATCAAATAT-G
* * * * *
80308491 ATGCCACTGTCTCAAACAGGGTCTTACAAGTAAATCAAATATG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATG
* * *
80308534 ATGGCAATGTCCTAGACATGGTCTTACATGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAA--TCAAATATG
* * * *
80308578 ATGTCAACGTCCCAGACATGGCCTTACATG-AAATCATATAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATAT
80308619 CGGAACCTTA
Statistics
Matches: 104, Mismatches: 19, Indels: 11
0.78 0.14 0.08
Matches are distributed among these distances:
41 5 0.05
43 55 0.53
44 38 0.37
45 6 0.06
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATATG
Found at i:80308612 original size:86 final size:86
Alignment explanation
Indices: 80308456--80308618 Score: 197
Period size: 86 Copynumber: 1.9 Consensus size: 86
80308446 CAATGCCATC
* * *
80308456 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCTCAAACAGGGTCTTACAAG
1 GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCAACTGTCCCAAACAGGGCCTTACAAG
80308521 TAAATCAAATATGATGGCAAT
66 TAAATCAAATATGATGGCAAT
* * * *
80308542 GTCCTAGACATGGTCTTACATGTAAATCTCAA-ATCGATGTCAAC-GTCCCAGACATGGCCTTAC
1 GTCCCAGACATGGTCTTACATGT-AATC-AAATATCGATG-CAACTGTCCCAAACAGGGCCTTAC
* *
80308605 ATG-AAATCATATAT
63 AAGTAAATCAAATAT
80308619 CGGAACCTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
86 32 0.49
87 28 0.43
88 5 0.08
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.28
Consensus pattern (86 bp):
GTCCCAGACATGGTCTTACATGTAATCAAATATCGATGCAACTGTCCCAAACAGGGCCTTACAAG
TAAATCAAATATGATGGCAAT
Found at i:80310878 original size:21 final size:21
Alignment explanation
Indices: 80310852--80310901 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
80310842 TGTATTAAAA
80310852 TTTGGTTAAGAAATCTTACCG
1 TTTGGTTAAGAAATCTTACCG
*
80310873 TTTGGTTAAGAAATCTTATCG
1 TTTGGTTAAGAAATCTTACCG
80310894 TTTGGTTA
1 TTTGGTTA
80310902 GTTAATTAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (21 bp):
TTTGGTTAAGAAATCTTACCG
Found at i:80312110 original size:20 final size:20
Alignment explanation
Indices: 80312087--80312142 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
80312077 TTGCTCTTCA
*
80312087 GTGCCTCTGTTTGCATTTTG
1 GTGCCTCTGTTTGCATTTCG
*
80312107 GTGCCTCTGTTTGCAGTTCG
1 GTGCCTCTGTTTGCATTTCG
* *
80312127 GTGCCTTTGATTGCAT
1 GTGCCTCTGTTTGCAT
80312143 ATTCATGCCC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.07, C:0.21, G:0.27, T:0.45
Consensus pattern (20 bp):
GTGCCTCTGTTTGCATTTCG
Found at i:80313285 original size:214 final size:214
Alignment explanation
Indices: 80312916--80313345 Score: 842
Period size: 214 Copynumber: 2.0 Consensus size: 214
80312906 GTTGCCGAAT
80312916 TGCACTCTGCTCTATCATCAGTAGGGTAAGTGATTTAGGTGTTTTGTTGTCTCATTTTATAAAAT
1 TGCACTCTGCTCTATCATCAGTAGGGTAAGTGATTTAGGTGTTTTGTTGTCTCATTTTATAAAAT
80312981 ACTAAATGAAGGGTTGTGATTGATCAGTAAGTATGATTTAATTAAAGTTTGCAGTGAAATTCGAT
66 ACTAAATGAAGGGTTGTGATTGATCAGTAAGTATGATTTAATTAAAGTTTGCAGTGAAATTCGAT
*
80313046 TAAAAGTTTAACGAAAAGGTTTTGTGACTTTTGTTTAGGTGGAGACCAAGAGTTGGTTGGTGCAC
131 TAAAAGTTTAACGAAAAGGTTTTGTGACTCTTGTTTAGGTGGAGACCAAGAGTTGGTTGGTGCAC
80313111 CTTCAAGGAACTAAGGGAG
196 CTTCAAGGAACTAAGGGAG
*
80313130 TGCACTCTGCTCTATCGTCAGTAGGGTAAGTGATTTAGGTGTTTTGTTGTCTCATTTTATAAAAT
1 TGCACTCTGCTCTATCATCAGTAGGGTAAGTGATTTAGGTGTTTTGTTGTCTCATTTTATAAAAT
80313195 ACTAAATGAAGGGTTGTGATTGATCAGTAAGTATGATTTAATTAAAGTTTGCAGTGAAATTCGAT
66 ACTAAATGAAGGGTTGTGATTGATCAGTAAGTATGATTTAATTAAAGTTTGCAGTGAAATTCGAT
80313260 TAAAAGTTTAACGAAAAGGTTTTGTGACTCTTGTTTAGGTGGAGACCAAGAGTTGGTTGGTGCAC
131 TAAAAGTTTAACGAAAAGGTTTTGTGACTCTTGTTTAGGTGGAGACCAAGAGTTGGTTGGTGCAC
80313325 CTTCAAGGAACTAAGGGAG
196 CTTCAAGGAACTAAGGGAG
80313344 TG
1 TG
80313346 ATTTTGGTTG
Statistics
Matches: 214, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
214 214 1.00
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.35
Consensus pattern (214 bp):
TGCACTCTGCTCTATCATCAGTAGGGTAAGTGATTTAGGTGTTTTGTTGTCTCATTTTATAAAAT
ACTAAATGAAGGGTTGTGATTGATCAGTAAGTATGATTTAATTAAAGTTTGCAGTGAAATTCGAT
TAAAAGTTTAACGAAAAGGTTTTGTGACTCTTGTTTAGGTGGAGACCAAGAGTTGGTTGGTGCAC
CTTCAAGGAACTAAGGGAG
Found at i:80314308 original size:113 final size:113
Alignment explanation
Indices: 80314176--80314409 Score: 396
Period size: 113 Copynumber: 2.1 Consensus size: 113
80314166 ACTAAAAATG
* * * *
80314176 GGCTTAGGCCTATACTGTGATTATCTGTATGCTATTTGTTTGTTTGCATGGGGATTACATACTGA
1 GGCTTAGGCCCAGACTGTGATTATCTGTATGCTATTTGTTTGTTTGCATGGCGATTACACACTGA
* * *
80314241 GTTTATGTAAACTCACCCTTTCTGTTTTATCTGTACAGGTAATCCGTA
66 GTTTATGTAAACTCACCCCTTCTGTTTTATCTATACAGGTAATCCCTA
*
80314289 GGCTTAGGCCCAGACTGTGATTATCTGTATGTTATTTGTTTGTTTGCATGGCGATTACACACTGA
1 GGCTTAGGCCCAGACTGTGATTATCTGTATGCTATTTGTTTGTTTGCATGGCGATTACACACTGA
80314354 GTTTATGTAAACTCACCCCTTCTGTTTTATCTATACAGGTAATCCCTA
66 GTTTATGTAAACTCACCCCTTCTGTTTTATCTATACAGGTAATCCCTA
80314402 GGCTTAGG
1 GGCTTAGG
80314410 TGGATCGGAG
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 113 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40
Consensus pattern (113 bp):
GGCTTAGGCCCAGACTGTGATTATCTGTATGCTATTTGTTTGTTTGCATGGCGATTACACACTGA
GTTTATGTAAACTCACCCCTTCTGTTTTATCTATACAGGTAATCCCTA
Found at i:80323868 original size:41 final size:41
Alignment explanation
Indices: 80323823--80323940 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
80323813 TGAAAGATAA
80323823 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
80323864 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80323894 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
80323935 ATGTAG
1 ATGTAG
80323941 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:80323879 original size:71 final size:71
Alignment explanation
Indices: 80323791--80323954 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80323781 GAGATGTATC
80323791 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80323856 AGGACA
66 AGGACA
80323862 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80323927 AGGACA
66 AGGACA
80323933 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80323955 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80325425 original size:71 final size:71
Alignment explanation
Indices: 80325341--80325504 Score: 319
Period size: 71 Copynumber: 2.3 Consensus size: 71
80325331 CGATTTGTCT
80325341 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80325406 CTTTCA
66 CTTTCA
*
80325412 CGTAGCTCTCTTGTCTACATGATGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80325477 CTTTCA
66 CTTTCA
80325483 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80325505 GATACATCTC
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.20, C:0.28, G:0.17, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80325542 original size:71 final size:70
Alignment explanation
Indices: 80325341--80325538 Score: 233
Period size: 71 Copynumber: 2.8 Consensus size: 70
80325331 CGATTTGTCT
* * * *
80325341 CGTAGCTCTCTTGTCTACATG-GTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTA
1 CGTAGCTCTCTTGTCTACATGAG-GTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTA
80325405 TCTTTCA
64 TCTTTCA
* * * * *
80325412 CGTAGCTCTCTTGTCTACATGATGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGAGGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
80325477 CTTTCA
65 CTTTCA
* *
80325483 CGTAGCTCTCTTGTCTACATG-GGATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGAGG-TACATACTTCGAATCACACATGCGACCTAGCTAC
80325539 TACAGGGTGT
Statistics
Matches: 117, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
68 22 0.19
69 1 0.01
70 1 0.01
71 93 0.79
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGAGGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80337303 original size:26 final size:27
Alignment explanation
Indices: 80337274--80337361 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
80337264 GCAATGTCGC
80337274 AGCAAAGCTGCCAGTAACAGTAT-CGT
1 AGCAAAGCTGCCAGTAACAGTATACGT
* * *
80337300 AGCAAAGCTGGCAGTATCAGTATATGT
1 AGCAAAGCTGCCAGTAACAGTATACGT
* ** * *
80337327 GGCAAAGCCACCAGTAATAGTATATGT
1 AGCAAAGCTGCCAGTAACAGTATACGT
*
80337354 GGCAAAGC
1 AGCAAAGC
80337362 CACCAATACA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
26 21 0.40
27 31 0.60
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.20
Consensus pattern (27 bp):
AGCAAAGCTGCCAGTAACAGTATACGT
Found at i:80337341 original size:27 final size:27
Alignment explanation
Indices: 80337311--80337376 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
80337301 GCAAAGCTGG
80337311 CAGTATCAGTATATGTGGCAAAGCCAC
1 CAGTATCAGTATATGTGGCAAAGCCAC
80337338 CAGTAAT-AGTATATGTGGCAAAGCCAC
1 CAGT-ATCAGTATATGTGGCAAAGCCAC
*
80337365 CAATA-CAGTATA
1 CAGTATCAGTATA
80337377 CTTCCTCCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 7 0.19
27 27 0.75
28 2 0.06
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (27 bp):
CAGTATCAGTATATGTGGCAAAGCCAC
Found at i:80341154 original size:26 final size:26
Alignment explanation
Indices: 80341117--80341188 Score: 92
Period size: 26 Copynumber: 2.7 Consensus size: 26
80341107 TATTACAGCT
* *
80341117 AAGCTACCAGTATCAGTATATGTGGTA
1 AAGCCACCAGTA-CAGTATATGTGGCA
*
80341144 AAGCCA-TAGTAACAGTATATGTGGCA
1 AAGCCACCAGT-ACAGTATATGTGGCA
80341170 AAGCCACCAGTACAGTATA
1 AAGCCACCAGTACAGTATA
80341189 CTTCCTCCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
26 30 0.77
27 9 0.23
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.24
Consensus pattern (26 bp):
AAGCCACCAGTACAGTATATGTGGCA
Found at i:80348567 original size:22 final size:22
Alignment explanation
Indices: 80348537--80348579 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
80348527 TGCAACCCAA
* *
80348537 TCCAAACCAGCCAATACACCAC
1 TCCAAACCAACCAACACACCAC
*
80348559 TCCATACCAACCAACACACCA
1 TCCAAACCAACCAACACACCA
80348580 TGTGGGGACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.47, G:0.02, T:0.09
Consensus pattern (22 bp):
TCCAAACCAACCAACACACCAC
Found at i:80358159 original size:50 final size:51
Alignment explanation
Indices: 80358103--80358231 Score: 188
Period size: 50 Copynumber: 2.5 Consensus size: 51
80358093 ATCTGGCACG
* *
80358103 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAGCCATCGGATACA
* * ** *
80358153 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAGCCATCGGATACA
80358204 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
80358232 TACGACCTCA
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
50 35 0.50
51 35 0.50
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAAAGCCATCGGATACA
Found at i:80361438 original size:48 final size:48
Alignment explanation
Indices: 80361375--80361698 Score: 277
Period size: 48 Copynumber: 6.8 Consensus size: 48
80361365 TGATATGTGT
* *
80361375 GCCATTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAATATGAGA
* * *
80361423 GCCAGTGTAAGACCATGTTTGGAACATGGGAT---CAACAATGTAATGAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAA--T-ATGAGA
* *
80361471 GCCAGTGTAAGACCATGTTTGGAACATGGCATC-G--ATAATGTAATGAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAA--T-ATGAGA
* * * ** *
80361519 GCCAGTGTATGACCATGTCTGGGACATTGCATCGG-CATTGATATGTGCA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA-CAATATGAG-A
* * *
80361568 -CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTAAGAGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAATATGAGA
* * * * * * *
80361615 GCCAATGTAAAACCATGTCTGGGACATGGCATCGGCCTCGACATGTGA
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAATATGAGA
* * * *
80361663 GCCAATGTAAGACCATCTTTGGAACATGGTATCGGC
1 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGC
80361699 AACTCTTATG
Statistics
Matches: 228, Mismatches: 37, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
45 5 0.02
47 2 0.01
48 213 0.93
49 5 0.02
50 1 0.00
51 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACAATATGAGA
Found at i:80361645 original size:144 final size:144
Alignment explanation
Indices: 80361375--80361648 Score: 349
Period size: 144 Copynumber: 1.9 Consensus size: 144
80361365 TGATATGTGT
*
80361375 GCCATTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
* * * *
80361440 TTTGGAACATGGGATCAACAATGTAATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG
66 TTTGGAACATGGCATCAACAATGTAATGAGAGCCAATGTAAAACCATGTCTGGAACATGGCATCG
80361505 ATAATGTAATGAGA
131 ATAATGTAATGAGA
* * ** * *
80361519 GCCAGTGTATGACCATGTCTGGGACATTGCATCGG-CATTGATATGTGCA-CTAGTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAG-AGCCAGTGTAAGACCA
* ** *
80361582 TGTTTGGGACATGGCATCGGCCACAT-TAA-GAGAGCCAATGTAAAACCATGTCTGGGACATGGC
64 TGTTTGGAACATGGCATC-AACA-ATGTAATGAGAGCCAATGTAAAACCATGTCTGGAACATGGC
80361645 ATCG
127 ATCG
80361649 GCCTCGACAT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
143 2 0.02
144 101 0.91
145 6 0.05
146 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (144 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATG
TTTGGAACATGGCATCAACAATGTAATGAGAGCCAATGTAAAACCATGTCTGGAACATGGCATCG
ATAATGTAATGAGA
Found at i:80361665 original size:144 final size:144
Alignment explanation
Indices: 80361369--80361698 Score: 339
Period size: 144 Copynumber: 2.3 Consensus size: 144
80361359 TTTGGGTGAT
* *
80361369 ATGTGTGCCATTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAG
1 ATGTGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAG
* * * *
80361434 ACCATGTTTGGAACATGGGATCAACAATGTAATGAGAGCCAGTGTAAGACCATGTTTGGAACATG
66 ACCATGTTTGGAACATGGCATCAACAATGTAATGAGAGCCAATGTAAAACCATGTCTGGAACATG
*
80361499 GCATCGATAATGTA
131 GCATCGAGAATGTA
* * * * ** * *
80361513 ATGAGAGCCAGTGTATGACCATGTCTGGGACATTGCATCGG-CATTGATATGTGCA-CTAGTGTA
1 ATGTGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCA-CAATATGAG-AGCCAGTGTA
* ** *
80361576 AGACCATGTTTGGGACATGGCATCGGCCACAT-TAA-GAGAGCCAATGTAAAACCATGTCTGGGA
64 AGACCATGTTTGGAACATGGCATC-AACA-ATGTAATGAGAGCCAATGTAAAACCATGTCTGGAA
**
80361639 CATGGCATCG-GCCTCG-A
127 CATGGCATCGAGAAT-GTA
* * * *
80361656 CATGTGAGCCAATGTAAGACCATCTTTGGAACATGGTATCGGC
1 -ATGTGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGC
80361699 AACTCTTATG
Statistics
Matches: 151, Mismatches: 28, Indels: 13
0.79 0.15 0.07
Matches are distributed among these distances:
143 4 0.03
144 139 0.92
145 6 0.04
146 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (144 bp):
ATGTGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAG
ACCATGTTTGGAACATGGCATCAACAATGTAATGAGAGCCAATGTAAAACCATGTCTGGAACATG
GCATCGAGAATGTA
Found at i:80361697 original size:96 final size:94
Alignment explanation
Indices: 80361369--80361698 Score: 342
Period size: 96 Copynumber: 3.4 Consensus size: 94
80361359 TTTGGGTGAT
* * * * * *
80361369 ATGTGTGCCATTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTAAGAGAGCCAGTGTAAG
* * * **
80361434 ACCATGTTTGGAACATGGGATCAACAATGTA
66 ACCATGTCTGGGACATGGCATCGGC-ATG-A
* **
80361465 ATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATC-GATA-ATGTAATGAGAGCCAGTGTA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACAT-TAA-GAGAGCCAGTGTA
* *
80361528 TGACCATGTCTGGGACATTGCATCGGCATTGA
64 AGACCATGTCTGGGACATGGCATCGGCA-TGA
* * *
80361560 TATGTGCA-CTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACATTAAGAGAGCCAATGTA
1 -ATGTG-AGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTAAGAGAGCCAGTGTA
* *
80361624 AAACCATGTCTGGGACATGGCATCGGCCTCGA
64 AGACCATGTCTGGGACATGGCATCGGCAT-GA
* * *
80361656 CATGTGAGCCAATGTAAGACCATCTTTGGAACATGGTATCGGC
1 -ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGC
80361699 AACTCTTATG
Statistics
Matches: 193, Mismatches: 32, Indels: 18
0.79 0.13 0.07
Matches are distributed among these distances:
94 1 0.01
95 8 0.04
96 176 0.91
97 6 0.03
98 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCCACATTAAGAGAGCCAGTGTAAG
ACCATGTCTGGGACATGGCATCGGCATGA
Found at i:80365922 original size:18 final size:20
Alignment explanation
Indices: 80365899--80365937 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
80365889 TATGGTAGGT
80365899 CGTGTGG-TT-ACACACGCC
1 CGTGTGGCTTGACACACGCC
*
80365917 CGTGTGGCTTGAGACACGCC
1 CGTGTGGCTTGACACACGCC
80365937 C
1 C
80365938 ATGTCCTCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 2 0.11
20 9 0.50
ACGTcount: A:0.15, C:0.33, G:0.31, T:0.21
Consensus pattern (20 bp):
CGTGTGGCTTGACACACGCC
Found at i:80371169 original size:40 final size:40
Alignment explanation
Indices: 80371124--80371287 Score: 179
Period size: 40 Copynumber: 4.1 Consensus size: 40
80371114 CGAGATTCAA
* * *
80371124 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
* *** *
80371164 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
*
80371204 CCGGATATAACAACTCGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
80371244 CCGGATATAATC-ACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAA-CAACTAGCACAATTGCCTTCGGGTCTTAGC
80371284 CCGG
1 CCGG
80371288 GTATCATTCA
Statistics
Matches: 104, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 99 0.95
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTAGCACAATTGCCTTCGGGTCTTAGC
Found at i:80373257 original size:40 final size:40
Alignment explanation
Indices: 80373213--80373380 Score: 162
Period size: 40 Copynumber: 4.2 Consensus size: 40
80373203 TCGAATATAA
*
80373213 CCGGATATAAGCA-TGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAAGCACT-AGCACAAATGCCTTCGGGTCTTAGC
* * *
80373253 CCGGATAGAATG-ACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA-GCACTAGCACAAATGCCTTCGGGTCTTAGC
* *
80373293 CCGGATAT-AGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAAG-CACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
80373333 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
80373373 CCGGATAT
1 CCGGATAT
80373381 CATTCAATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 102 0.95
41 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAAGCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:80373363 original size:80 final size:80
Alignment explanation
Indices: 80373229--80373380 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
80373219 ATAAGCATGT
* *
80373229 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
80373294 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
80373309 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGGCTTAG
80373372 CCCGGATAT
64 CCCGGATAT
80373381 CATTCAATTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:80384242 original size:40 final size:40
Alignment explanation
Indices: 80384187--80384436 Score: 376
Period size: 40 Copynumber: 6.2 Consensus size: 40
80384177 AACATTGGAA
80384187 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80384227 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80384267 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
80384307 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * * *
80384347 ATATATCCGGGCTAAGACCCGAAGGCCTTTGTGCAAG-TC
1 ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
* * ** * * *
80384386 ACCAAATCCGGATTATGACCCGAAGGCAATCGTGCGAGTCG
1 A-TATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
*
80384427 CTATATCCGG
1 ATATATCCGG
80384437 TTAAATCCCG
Statistics
Matches: 190, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 188 0.99
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG
Found at i:80385993 original size:40 final size:40
Alignment explanation
Indices: 80385949--80386111 Score: 150
Period size: 40 Copynumber: 4.1 Consensus size: 40
80385939 CAGGATTCAA
* *
80385949 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAGC
* *** **
80385989 CCGGATTTGGTAACTTGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAGC
*
80386029 CCGGATATAACAACTCA-CACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACAAC-AAGCAC-AATTGCCTTCGGGTCTTAGC
** * * * * *
80386069 CCGGATATAATTACTAGCATAAATGCCTTCGAGACTTAGC
1 CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAGC
80386109 CCG
1 CCG
80386112 AGTATCATTC
Statistics
Matches: 99, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
39 3 0.03
40 94 0.95
41 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CCGGATATAACAACAAGCACAATTGCCTTCGGGTCTTAGC
Found at i:80389623 original size:31 final size:31
Alignment explanation
Indices: 80389580--80389643 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
80389570 CTTTTCATAC
* *
80389580 TTCATATTTCATAACACTGGGTCGAAGCCTT
1 TTCAAATTTCATAACACTGGGCCGAAGCCTT
**
80389611 TTCAAATTTCATATTACTGGGCCGAAGCCTT
1 TTCAAATTTCATAACACTGGGCCGAAGCCTT
80389642 TT
1 TT
80389644 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTCAAATTTCATAACACTGGGCCGAAGCCTT
Found at i:80389947 original size:23 final size:24
Alignment explanation
Indices: 80389837--80390049 Score: 272
Period size: 24 Copynumber: 9.0 Consensus size: 24
80389827 GCTTTATCAT
*
80389837 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* * *
80389862 GTAACTGGGGCAAAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTA
* *
80389886 GTAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
80389910 ATCACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
80389933 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
* *
80389957 ATAACTGTGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
80389981 ATAACCGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80390004 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
80390027 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
80390050 GCACTTCCTC
Statistics
Matches: 167, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
23 64 0.38
24 92 0.55
25 11 0.07
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:80389950 original size:71 final size:70
Alignment explanation
Indices: 80389858--80390050 Score: 296
Period size: 71 Copynumber: 2.7 Consensus size: 70
80389848 CCTAGCCTCT
* * * *
80389858 TTTAGTAACTGGGGCAAAAGCCCTTTTTGTAACTGGGGCATAAGCCCTTTTGATCACTAGGGCAT
1 TTTAATAACTGGGGCATAAGCCC-TTTTGTAACTGGGGCATAAGCCCTTTTGATAACCAGGGCAT
80389923 AAGCCC
65 AAGCCC
* *
80389929 TTTAATAACTGGGGCATAAGCCCTTTTGATAACTGTGGCATAAGCCCTTTTGATAACCGGGGCAT
1 TTTAATAACTGGGGCATAAGCCCTTTTG-TAACTGGGGCATAAGCCCTTTTGATAACCAGGGCAT
80389994 AAGCCC
65 AAGCCC
**
80390000 TTTAATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAAGCCCTTTTG
1 TTTAATAACTGGGGCATAAGCCCTTTTGTAACTGGGGCATAAGCCCTTTTG
80390051 CACTTCCTCC
Statistics
Matches: 112, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
70 27 0.24
71 85 0.76
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (70 bp):
TTTAATAACTGGGGCATAAGCCCTTTTGTAACTGGGGCATAAGCCCTTTTGATAACCAGGGCATA
AGCCC
Found at i:80390123 original size:20 final size:20
Alignment explanation
Indices: 80390095--80390165 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
80390085 GCATTTATGA
* *
80390095 ACATCTCATGTGTATATCAT
1 ACATATCATGTGCATATCAT
80390115 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
80390135 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
80390155 ACATATCATGT
1 ACATATCATGT
80390166 TTATCAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.37
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:80391434 original size:27 final size:27
Alignment explanation
Indices: 80391399--80391454 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
80391389 GGCCATATTC
* *
80391399 GTCATTTTACCATGCAGGGG-TATTACG
1 GTCACTTTACCATACAGGGGCT-TTACG
*
80391426 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCATACAGGGGCTTTACG
80391453 GT
1 GT
80391455 TTTTTACCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (27 bp):
GTCACTTTACCATACAGGGGCTTTACG
Found at i:80391628 original size:27 final size:27
Alignment explanation
Indices: 80391492--80391744 Score: 177
Period size: 27 Copynumber: 9.3 Consensus size: 27
80391482 ATTCATCCTA
* * ** *
80391492 CAAGGGTGTTTTGGTAAATCAACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** ** *
80391519 CAAAGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
80391546 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTACAAA-T
* * **
80391575 CAAGGGTATTTTTGTAACTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
80391602 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * *
80391629 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
80391656 CAAGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
80391682 CTAGGGGTATTTTGGTAATTTTACAAAC
1 C-AAGGGTATTTTGGTAATTTTACAAAT
** **
80391710 CAAGGGTATTTTACTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
80391737 CGAGGGTA
1 CAAGGGTA
80391745 AAACAGTAAT
Statistics
Matches: 177, Mismatches: 43, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
26 1 0.01
27 148 0.84
28 15 0.08
29 13 0.07
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:80391728 original size:81 final size:81
Alignment explanation
Indices: 80391575--80391729 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 81
80391565 TTTAGAAAGT
* * ***
80391575 CAAGGGTATTTTTGTAACTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
1 CAAGGGTATTTTGGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
**
80391640 CGGTAATTTCACAAAC
66 CACTAATTTCACAAAC
80391656 CAAGGGTATTTTGGTAA-TTT-TACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTAT
1 CAAGGGTATTTTGGTAACTTTGTA-AAAC-AGGGGTATTTTGGTAATTTTACAAACCAAGGGTAT
*
80391719 TTTACTAATTT
64 TTCACTAATTT
80391730 TGTAAATCGA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
79 2 0.03
80 6 0.09
81 56 0.88
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAACTTTGTAAAACAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTT
CACTAATTTCACAAAC
Found at i:80391743 original size:81 final size:79
Alignment explanation
Indices: 80391523--80391744 Score: 196
Period size: 81 Copynumber: 2.7 Consensus size: 79
80391513 ACAAACCAAA
** ** * *
80391523 GGTATTTCAGTAATTTTGTAAACCAATGGTATTTCTATAATTTTTAGAAAGTCAAGGGTATTTTT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTT-TATAATTTTT--AAA-TCAAGGGTATTTTG
*
80391588 GTAACTTTGTAAATCAGG
62 GTAACTTTGTAAAACAGG
*** ** ** *
80391606 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTT-TATAATTT-TTAAATCAAGGGTATTTTGGT
80391671 AA-TTT-TACAAACTAGG
64 AACTTTGTA-AAAC-AGG
*
80391687 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTACTAATTTTGTAAATCGAGGGTA
1 GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA-TAATTTT-TAAATCAAGGGTA
80391745 AAACAGTAAT
Statistics
Matches: 110, Mismatches: 24, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
79 2 0.02
80 6 0.05
81 66 0.60
82 3 0.03
83 33 0.30
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (79 bp):
GGTATTTTGGTAATTTTACAAACCAAGGGTATTTTATAATTTTTAAATCAAGGGTATTTTGGTAA
CTTTGTAAAACAGG
Found at i:80391754 original size:27 final size:27
Alignment explanation
Indices: 80391724--80391933 Score: 273
Period size: 27 Copynumber: 7.8 Consensus size: 27
80391714 GGTATTTTAC
* *
80391724 TAATTTTGTAAATCGAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
80391751 TAATTCTGTAAATCAAGGGTAAAACAG
1 TAATTCTGTAAATCGAGGGTAAAACGG
*
80391778 TAATTCTATAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
80391805 TAATTCTGTAAATCGAGGGTAAAACGG
1 TAATTCTGTAAATCGAGGGTAAAACGG
* *
80391832 TAATTCTGTAAGTCGAGGGTAAAACGA
1 TAATTCTGTAAATCGAGGGTAAAACGG
80391859 TAA-TCATGTAAATC-AGGGGTAAAACGG
1 TAATTC-TGTAAATCGA-GGGTAAAACGG
* * *
80391886 TAATTATGTAAAT-TAGGGGTAAAACGA
1 TAATTCTGTAAATCGA-GGGTAAAACGG
*
80391913 TAATTCTGTAAATCGGGGGTA
1 TAATTCTGTAAATCGAGGGTA
80391934 CTTTGGTAAT
Statistics
Matches: 163, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
26 3 0.02
27 159 0.98
28 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
TAATTCTGTAAATCGAGGGTAAAACGG
Found at i:80391754 original size:54 final size:54
Alignment explanation
Indices: 80391696--80391856 Score: 142
Period size: 54 Copynumber: 3.0 Consensus size: 54
80391686 GGGTATTTTG
* **** * *
80391696 GTAATTTTACAAACCAAGGGTATTTTACTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTACAAACCAAGGGTAAAACACTAATTCTATAAATCGAGGGTAAAACA
** * * *
80391750 GTAATTCTGTAAATCAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTACAAACCAAGGGTAAAACACTAATTCTATAAATCGAGGGTAAAACA
** * * ** * *
80391804 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGAGGGTAAAAC
1 GTAATTCTACAAACCAAGGGTAAAACACTAATTCTATAAATCGAGGGTAAAAC
80391857 GATAATCATG
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.29
Consensus pattern (54 bp):
GTAATTCTACAAACCAAGGGTAAAACACTAATTCTATAAATCGAGGGTAAAACA
Found at i:80391781 original size:81 final size:80
Alignment explanation
Indices: 80391696--80391926 Score: 211
Period size: 81 Copynumber: 2.9 Consensus size: 80
80391686 GGGTATTTTG
* ** *
80391696 GTAATTTTACAAACCAAGGGTATTTTAC-TAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTCTACAAACCAAGGGTA--AAACGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGT
80391760 AAATCAAGGGTAAAACA
64 AAATCAAGGGTAAAACA
* * * *
80391777 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAAC-GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTA
* *
80391842 AGTCGAGGGTAAAAC-
65 AATCAAGGGTAAAACA
** * * * *
80391857 GATAA-TCATGTAAATCAGGGGTAAAACGGTAATTATGTAAAT-TAGGGGTAAAAC-GATAATTC
1 G-TAATTC-TACAAACCAAGGGTAAAAC-GTAATTCTGTAAATCGA-GGGTAAAACAG-TAATTC
80391919 TGTAAATC
61 TGTAAATC
80391927 GGGGGTACTT
Statistics
Matches: 128, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
79 2 0.02
80 5 0.04
81 121 0.95
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (80 bp):
GTAATTCTACAAACCAAGGGTAAAACGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAA
ATCAAGGGTAAAACA
Found at i:80392029 original size:29 final size:29
Alignment explanation
Indices: 80391943--80392029 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
80391933 ACTTTGGTAA
*
80391943 TTTTACAAGTCGAA-GGTATTTCGATAA--
1 TTTTACAAATC-AAGGGTATTTCGATAATT
* * *
80391970 ATTTACAAATCGAGGGTATTTC-AGTATTT
1 TTTTACAAATCAAGGGTATTTCGA-TAATT
80391999 TTTTACAAA-CTAAGGGTATTTCGATAATT
1 TTTTACAAATC-AAGGGTATTTCGATAATT
80392028 TT
1 TT
80392030 AGTAAACTAA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
26 2 0.04
27 19 0.40
28 1 0.02
29 24 0.51
30 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.41
Consensus pattern (29 bp):
TTTTACAAATCAAGGGTATTTCGATAATT
Found at i:80399827 original size:71 final size:71
Alignment explanation
Indices: 80399738--80399901 Score: 292
Period size: 71 Copynumber: 2.3 Consensus size: 71
80399728 GAGATGTATC
80399738 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
80399803 AGGACA
66 AGGACA
* * *
80399809 CCATGTAGACGAGAGAGCTACGTGAAAGATAGATGTAGCTGGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
*
80399874 CGGACA
66 AGGACA
80399880 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
80399902 AGACAAATTG
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
71 88 1.00
ACGTcount: A:0.33, C:0.18, G:0.30, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:80408957 original size:23 final size:24
Alignment explanation
Indices: 80408919--80408963 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
80408909 TTTGCTCTTC
*
80408919 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
80408943 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
80408964 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:80409227 original size:55 final size:53
Alignment explanation
Indices: 80409037--80409291 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
80409027 ACACGGGTAC
* * * *
80409037 CTTACCATTGCCATGACTTGTCATGGTCTTACATGGTA---T-CCTT-TTGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAG-AA
* * *
80409086 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTAT-GAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTA-CCTTGCCTTATAGAA
* * *
80409139 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACC-TTGCCTTATAG-AA
* * * * *
80409194 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATG-GTACCTTGCCTTATAGAA
* *
80409247 CTTTATCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 C-TTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTA-CCTT
80409292 AAACCCTAAT
Statistics
Matches: 173, Mismatches: 20, Indels: 20
0.81 0.09 0.09
Matches are distributed among these distances:
49 36 0.21
52 1 0.01
53 48 0.28
54 14 0.08
55 72 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTACCTTGCCTTATAGAA
Found at i:80409228 original size:108 final size:110
Alignment explanation
Indices: 80409084--80409284 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
80409074 ATCCTTTTGA
* *
80409084 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCATTGCCTTATG-AAC-TCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTA-GAAACTTCACCAA
80409147 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * * *
80409192 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACTTTATCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTAGAAACTTCACCAAT
80409257 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
80409285 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 5 0.06
110 28 0.34
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCATTGCCTTAGAAACTTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Done.