Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 257 of 325
Found at i:80411281 original size:48 final size:47
Alignment explanation
Indices: 80411229--80411595 Score: 330
Period size: 48 Copynumber: 7.7 Consensus size: 47
80411219 TATGTGTGCC
* * *
80411229 AGTGTAAGACCATGTCTGGGACATGGCGTCGGCCACGATATGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGG-CATGATATGAGAGCT
* ** *
80411277 AGTGTAAGACCATGTTTGGAACATGGCATCGATAATG-TAATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCG-GCATGAT-ATGAGAGCT
* * *
80411325 AGTGTAAGACCATGTTTGGAACATGGCATCGACAATG-TAATGAGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATGAT-ATGAGAGCT
* * ** * *
80411373 AATGTAAGACCATGTCTGGGACATGGTGTCGGTATTGATATGTA-TGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TGATATG-AGAGCT
** * *
80411421 AGTGTAAGACCATGTTTGGGACATGGTGTCGGTATTGATATGTA-TGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TGATATG-AGAGCT
** *
80411469 AGTGTAAGACCATGTTTGGGACATGGCATTAGCATTGAGATGAGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCA-TGATATGAGAGCT
** * * *
80411517 AGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCGACATGTA-AGCC
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCAT-GATATG-AGAGCT
*
80411565 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTTTGGGACATGGCATCG
80411596 ACAATTCACC
Statistics
Matches: 273, Mismatches: 37, Indels: 18
0.83 0.11 0.05
Matches are distributed among these distances:
47 4 0.01
48 266 0.97
49 3 0.01
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCATGATATGAGAGCT
Found at i:80411493 original size:144 final size:144
Alignment explanation
Indices: 80411226--80411596 Score: 457
Period size: 144 Copynumber: 2.6 Consensus size: 144
80411216 TGATATGTGT
80411226 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCA-CGATATG-AGAGCTAGTGTAAGACCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGG-CATCGATATGTA-AGCTAGTGTAAGACCA
80411289 TGTTTGGAACATGGCATCGATAATGTAATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
64 TGTTTGGAACATGGCATCGATAATGTAATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
80411354 CGA-CAATGTA-ATGAGA
129 -GAGCAATG-AGATGAGA
* * * * *
80411370 GCCAATGTAAGACCATGTCTGGGACATGGTGTCGGTATTGATATGTATGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCATCGATATGTAAGCTAGTGTAAGACCATG
* ** * * * * *
80411435 TTTGGGACATGGTGTCGGTATTG-ATATGTA-TGCTAGTGTAAGACCATGTTTGGGACATGGCAT
66 TTTGGAACATGGCATCGATAATGTA-ATG-AGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT
* *
80411498 TAGCATTGAGATGAGA
129 GAGCAATGAGATGAGA
* * * * * *
80411514 GCTAGTGTAAGACCATGCCTGGGACATGGCATCGGCCTCGACATGTAAGCCAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCATCGATATGTAAGCTAGTGTAAGACCATG
80411579 TTTGGAACATGGCATCGA
66 TTTGGAACATGGCATCGA
80411597 CAATTCACCT
Statistics
Matches: 191, Mismatches: 30, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
143 4 0.02
144 185 0.97
145 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (144 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGGCATCGATATGTAAGCTAGTGTAAGACCATG
TTTGGAACATGGCATCGATAATGTAATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATGA
GCAATGAGATGAGA
Found at i:80411913 original size:24 final size:24
Alignment explanation
Indices: 80411881--80411932 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
80411871 ACTCAAGAAT
80411881 GTTGTACTGATTGTAATATGCATG
1 GTTGTACTGATTGTAATATGCATG
80411905 GTTGTACTGATTGTAATATGCATG
1 GTTGTACTGATTGTAATATGCATG
80411929 GTTG
1 GTTG
80411933 ATGTTGTTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.23, C:0.08, G:0.27, T:0.42
Consensus pattern (24 bp):
GTTGTACTGATTGTAATATGCATG
Found at i:80417326 original size:40 final size:39
Alignment explanation
Indices: 80417245--80417335 Score: 110
Period size: 40 Copynumber: 2.3 Consensus size: 39
80417235 TGTCAGTGTA
***
80417245 TATTTTTTTAAAAAATTGTTTTCAAAAATCATTGGTATG
1 TATTTTTTTAAAAAATTGTTTTCAAAAATCATCAATATG
* * * *
80417284 TATTTTTTTCAAAAATCTGTTTTCAAAATTTATCAATTTG
1 TATTTTTTTAAAAAAT-TGTTTTCAAAAATCATCAATATG
80417324 TATTTTTTTAAA
1 TATTTTTTTAAA
80417336 TGTTTTCCAA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 15 0.35
40 28 0.65
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.53
Consensus pattern (39 bp):
TATTTTTTTAAAAAATTGTTTTCAAAAATCATCAATATG
Found at i:80425758 original size:5 final size:5
Alignment explanation
Indices: 80425748--80425777 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
80425738 AACCTAAATT
*
80425748 AATAA AATAA AATAA AATAA AACAA AATAA
1 AATAA AATAA AATAA AATAA AATAA AATAA
80425778 TATCTTCCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:80428930 original size:9 final size:9
Alignment explanation
Indices: 80428916--80428941 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
80428906 TTTGTTTTGA
80428916 AGAAGATGG
1 AGAAGATGG
80428925 AGAAGATGG
1 AGAAGATGG
80428934 AGAAGATG
1 AGAAGATG
80428942 AGTTGGGGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.42, T:0.12
Consensus pattern (9 bp):
AGAAGATGG
Found at i:80428980 original size:8 final size:8
Alignment explanation
Indices: 80428967--80428998 Score: 64
Period size: 8 Copynumber: 4.0 Consensus size: 8
80428957 GATTGGGGTG
80428967 TTTTAATT
1 TTTTAATT
80428975 TTTTAATT
1 TTTTAATT
80428983 TTTTAATT
1 TTTTAATT
80428991 TTTTAATT
1 TTTTAATT
80428999 GGTTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTAATT
Found at i:80429007 original size:16 final size:16
Alignment explanation
Indices: 80428968--80429008 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
80428958 ATTGGGGTGT
*
80428968 TTTAATTTTTTAATTT
1 TTTAATTTTTTAATTG
80428984 TTTAATTTTTTAATTGG
1 TTTAATTTTTTAATT-G
80429001 TTT-ATTTT
1 TTTAATTTT
80429009 AGGTTGGGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 20 0.87
17 3 0.13
ACGTcount: A:0.22, C:0.00, G:0.05, T:0.73
Consensus pattern (16 bp):
TTTAATTTTTTAATTG
Found at i:80429238 original size:16 final size:16
Alignment explanation
Indices: 80429213--80429243 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80429203 ATTTATTGGA
80429213 TTTGGGTTTTGGGTAT
1 TTTGGGTTTTGGGTAT
*
80429229 TTTGGTTTTTGGGTA
1 TTTGGGTTTTGGGTA
80429244 GGAATTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.00, G:0.35, T:0.58
Consensus pattern (16 bp):
TTTGGGTTTTGGGTAT
Found at i:80443047 original size:27 final size:27
Alignment explanation
Indices: 80443017--80443148 Score: 165
Period size: 27 Copynumber: 4.9 Consensus size: 27
80443007 ATTACCAAAG
* * **
80443017 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
80443044 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
80443071 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
** * *
80443098 TACCCTTAATTTACAGAATTAATGTTT
1 TACCCTCGATTTACAGAATTACTATTT
*
80443125 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
80443149 AAATACCTTT
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.32, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:80443050 original size:54 final size:54
Alignment explanation
Indices: 80442992--80443118 Score: 128
Period size: 54 Copynumber: 2.4 Consensus size: 54
80442982 TACTGAAATG
** * *
80442992 CCCTCAAATTGTAAAATTACCAAAGTACCCTTGATTTATAGAATTACCGTTTTA
1 CCCTCAAATTACAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
* * * *** *
80443046 CCCTCGATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTA
1 CCCTCAAATTACAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
* * *
80443100 CCCTTAATTTACAGAATTA
1 CCCTCAAATTACAAAATTA
80443119 ATGTTTTACC
Statistics
Matches: 59, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 59 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (54 bp):
CCCTCAAATTACAAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTA
Found at i:80443155 original size:27 final size:27
Alignment explanation
Indices: 80443125--80443399 Score: 193
Period size: 27 Copynumber: 10.2 Consensus size: 27
80443115 ATTAATGTTT
* *
80443125 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
80443152 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
**
80443179 TACCCTCGATCAATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * * *
80443206 TACCCTAG-TCTATAAAATTGCTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* * *
80443232 TACCC-CTGGTTTGTAAAATTACCGAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* * *
80443259 TACCTTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
80443286 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * * * *
80443313 TATCACTAG-TTTGTGAAATTACCGAAA
1 TA-CCCTCGATTTATAAAATTACCAAAA
* * *
80443340 TAACCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
80443367 TACCC-CTGATTTACAAAGTTA-CAGAAA
1 TACCCTC-GATTTATAAAATTACCA-AAA
80443394 TACCCT
1 TACCCT
80443400 TGACTTTCTA
Statistics
Matches: 196, Mismatches: 42, Indels: 19
0.76 0.16 0.07
Matches are distributed among these distances:
26 28 0.14
27 165 0.84
28 3 0.02
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:80443165 original size:54 final size:54
Alignment explanation
Indices: 80443052--80443172 Score: 143
Period size: 54 Copynumber: 2.2 Consensus size: 54
80443042 TTTACCCTCG
* * * ***
80443052 ATTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTA
1 ATTTACAAAATTAATATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTA
* * * *
80443106 ATTTACAGAATTAATGTTTTACCCTCGATTTACAAAATTACTAAAATACCTTTG
1 ATTTACAAAATTAATATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTA
*
80443160 GTTTACAAAATTA
1 ATTTACAAAATTA
80443173 CCAAAATACC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.41
Consensus pattern (54 bp):
ATTTACAAAATTAATATTTTACCCTCGATTTACAAAATTACTAAAATACCCTTA
Found at i:80443183 original size:54 final size:54
Alignment explanation
Indices: 80443125--80443464 Score: 215
Period size: 54 Copynumber: 6.3 Consensus size: 54
80443115 ATTAATGTTT
** * ** *
80443125 TACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCAAAA
*** * * * *
80443179 TACCCTCGATCAATAAAATTACCAAAATACC-CTAGTCTATAAAATTGCTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCAAAA
* * * * **
80443232 TACCC-CTGGTTTGTAAAATTACCGAAATACC-TTCAATTTGTAAAATTACCAAAA
1 TACCCTC-GATTTGTAAAATTACCAAAATACCACT-AGTTTACAAAATTACCAAAA
* * *** *
80443286 TACCC-CTAGTTTGTAAAATTACCAAAATATCACTAGTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCAAAA
* * * *
80443340 TAACCTCAATTTGTAAAATTACCAAAATACCCCT-GATTTACAAAGTTA-CAGAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCACTAG-TTTACAAAATTACCA-AAA
* * *** * * **
80443394 TACCCTTGACTTTCTAAAAATTATGGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGA-TTTGT-AAAATTACCAAAATACCACTAGTTTACAAAATTACCAAAA
* *
80443450 TACCCTTGGTTTGTA
1 TACCCTCGATTTGTA
80443465 GATGTACCAA
Statistics
Matches: 223, Mismatches: 52, Indels: 22
0.75 0.18 0.07
Matches are distributed among these distances:
52 1 0.00
53 43 0.19
54 130 0.58
55 11 0.05
56 37 0.17
57 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCACTAGTTTACAAAATTACCAAAA
Found at i:80443183 original size:81 final size:81
Alignment explanation
Indices: 80442972--80443184 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 81
80442962 AATACTTTAG
* * * * * ** * * *
80442972 TTTACCAAATTACTGAAATGCCCTCAAATTGTAAAATTACCAAAGTACCCTTGATTTATAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTAATTTACAGAATT
*
80443037 ACCGTTTTACCCTCGA
66 AACGTTTTACCCTCGA
*** * * * ***
80443053 TTTACAAAATTACTATTTTACCCTCGATTTATAGAATTACTATTTTACCCTTAATTTACAGAATT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTAATTTACAGAATT
*
80443118 AATGTTTTACCCTCGA
66 AACGTTTTACCCTCGA
* * *
80443134 TTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCT
1 TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCT
80443185 CGATCAATAA
Statistics
Matches: 102, Mismatches: 30, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
81 102 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (81 bp):
TTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTTAATTTACAGAATT
AACGTTTTACCCTCGA
Found at i:80443210 original size:81 final size:80
Alignment explanation
Indices: 80443125--80443397 Score: 271
Period size: 81 Copynumber: 3.4 Consensus size: 80
80443115 ATTAATGTTT
** ** * * *
80443125 TACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATT
**
80443190 AATAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* * * * * *
80443206 TA-CCCTAGTCTATAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCGAAATACCTTCAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATT
80443270 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
* ** * * * * *
80443286 TACCCCTAGTTTGTAAAATTACCAAAATATCACTAGTTTGTGAAATTACCGAAATAACCTCAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATT
80443351 TGTAAAATTACCAAAA
65 TGTAAAATTACCAAAA
*
80443367 TACCCCTGATTTACAAAGTTAC-AGAAATACC
1 TACCCC-GATTTACAAAATTACTA-AAATACC
80443398 CTTGACTTTC
Statistics
Matches: 159, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
79 2 0.01
80 64 0.40
81 92 0.58
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
TACCCCGATTTACAAAATTACTAAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTT
GTAAAATTACCAAAA
Found at i:80443449 original size:27 final size:27
Alignment explanation
Indices: 80443410--80443461 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
80443400 TGACTTTCTA
80443410 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
80443437 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
80443462 GTAGATGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:80443575 original size:27 final size:27
Alignment explanation
Indices: 80443516--80443601 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
80443506 CCCTTATTAA
* * *
80443516 GTAAAAAGACAGTAAAGCCCCTATAGG
1 GTAAAGAGACCGTAAAGCCCCTGTAGG
80443543 GTAAAGAGACCGTAAAGCCCCTGTAGG
1 GTAAAGAGACCGTAAAGCCCCTGTAGG
* *
80443570 GTAAAGTGACCGTAATA-CCCCTGTATG
1 GTAAAGAGACCGTAA-AGCCCCTGTAGG
80443597 GTAAA
1 GTAAA
80443602 TTGACGAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
GTAAAGAGACCGTAAAGCCCCTGTAGG
Found at i:80444405 original size:26 final size:26
Alignment explanation
Indices: 80444351--80444406 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
80444341 GAGGAAGTGC
**
80444351 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
80444377 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
80444403 AAAA
1 AAAA
80444407 TGTACAGCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:80446412 original size:40 final size:40
Alignment explanation
Indices: 80446187--80446384 Score: 287
Period size: 40 Copynumber: 5.0 Consensus size: 40
80446177 TCGAATGATG
* * *
80446187 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
80446227 TCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
80446267 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
80446307 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
*
80446347 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTA
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA
80446385 TAACCGGGCT
Statistics
Matches: 150, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
39 1 0.01
40 138 0.92
41 11 0.07
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80446426 original size:40 final size:40
Alignment explanation
Indices: 80446280--80446431 Score: 116
Period size: 40 Copynumber: 3.8 Consensus size: 40
80446270 GGACTAAGAT
** *
80446280 CCGAAGGCATTTGTGCGAGTTACTA-AATCC-GGACTAAGAT-
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGA-TAAG-TC
** *
80446320 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGATAAGTC
1 CCGAAGGCATTTGAACGAGCTACTATAA-CCGGGATAAGTC
** * *
80446360 CCGAAGGCATTTGTGCGAGCTACTATAACCGGGCTATGTC
1 CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
* *
80446400 CCGAAGGTATTTGAACGAG-TAGCTATATCCGG
1 CCGAAGGCATTTGAACGAGCTA-CTATAACCGG
80446432 TTAAACTCCG
Statistics
Matches: 101, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
39 3 0.03
40 93 0.92
41 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGAACGAGCTACTATAACCGGGATAAGTC
Found at i:80446431 original size:80 final size:80
Alignment explanation
Indices: 80446187--80446419 Score: 271
Period size: 80 Copynumber: 2.9 Consensus size: 80
80446177 TCGAATGATG
* *
80446187 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAATCCGGACTAAGATCCGAAGGCAT
** *
80446250 TTGTGCAAGTTACTAAA
64 TTGAACGAGTTACTAAA
*
80446267 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCAT
**
80446330 TTGTGCGAGTTACTAAA
64 TTGAACGAGTTACTAAA
* * *
80446347 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTAT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCAT
80446410 TTGAACGAGT
64 TTGAACGAGT
80446420 AGCTATATCC
Statistics
Matches: 136, Mismatches: 9, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
79 4 0.03
80 118 0.87
81 14 0.10
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTACTAAATCCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAA
Found at i:80446431 original size:120 final size:120
Alignment explanation
Indices: 80446187--80446419 Score: 280
Period size: 120 Copynumber: 1.9 Consensus size: 120
80446177 TCGAATGATG
*
80446187 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
* **
80446252 GTGCAAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCAAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
* *
80446307 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGA-TAAG-TCCCGAAGGC
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAATCC-GGACTAAGAT-CCGAAGGC
* * * *
80446368 ATTTGTGCGAGCTACTATAA-CCGGGCTATG-TCCCGAAGGTATTTGAACGAGT
62 ATTTGTGCAAGCTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGT
80446420 AGCTATATCC
Statistics
Matches: 97, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
119 2 0.02
120 82 0.85
121 13 0.13
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCAAGCTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTTACTAAA
Found at i:80454493 original size:78 final size:80
Alignment explanation
Indices: 80454357--80454546 Score: 291
Period size: 78 Copynumber: 2.4 Consensus size: 80
80454347 TCGAATGATG
* * *
80454357 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATT
80454421 TGTGCGAGTTACTAAA
65 TGTGCGAGTTACTAAA
80454437 T-C-GGACTAAGAT-CCGAA-GCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCAT
80454498 TTGTGCGAGTTACTAAA
64 TTGTGCGAGTTACTAAA
80454515 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAG
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAG
80454547 CTGCTATAAC
Statistics
Matches: 100, Mismatches: 3, Indels: 14
0.85 0.03 0.12
Matches are distributed among these distances:
78 55 0.55
79 27 0.27
80 18 0.18
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:80454560 original size:40 final size:40
Alignment explanation
Indices: 80454357--80454546 Score: 275
Period size: 40 Copynumber: 4.8 Consensus size: 40
80454347 TCGAATGATG
* * *
80454357 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTAAA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTAAA
80454397 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
80454437 T-CGGACTAAGATCCGAA-GCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
80454475 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
80454515 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAG
1 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAG
80454547 CTGCTATAAC
Statistics
Matches: 141, Mismatches: 3, Indels: 12
0.90 0.02 0.08
Matches are distributed among these distances:
38 22 0.16
39 33 0.23
40 75 0.53
41 11 0.08
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:80454569 original size:40 final size:40
Alignment explanation
Indices: 80454357--80454580 Score: 193
Period size: 40 Copynumber: 5.7 Consensus size: 40
80454347 TCGAATGATG
*
80454357 TCCGGG-CTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTAAA
1 TCCGGGAC-AAGTCCCGAAGGCATTTGTGC-GAGCT-ACTAAA
*
80454397 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGAC-AAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
*
80454437 T-C-GGACTAAGAT-CCGAA-GCATTTGTGCGAGTTACTAAA
1 TCCGGGAC-AAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
*
80454475 TCC-GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGAC-AAG-TCCCGAAGGCATTTGTGCGAGCTACTAAA
* *
80454515 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGCTGCTATAA
1 TCCGGGACAAGTCCCGAAGGCATTTGTGCGAGCTACTA-AA
* * *
80454556 -CCGGGCCATGTCCCGAAGGTATTTG
1 TCCGGGACAAGTCCCGAAGGCATTTG
80454581 AACGAGTGGC
Statistics
Matches: 167, Mismatches: 8, Indels: 18
0.87 0.04 0.09
Matches are distributed among these distances:
38 22 0.13
39 35 0.21
40 96 0.57
41 14 0.08
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGACAAGTCCCGAAGGCATTTGTGCGAGCTACTAAA
Found at i:80456012 original size:25 final size:25
Alignment explanation
Indices: 80455959--80456035 Score: 118
Period size: 25 Copynumber: 3.0 Consensus size: 25
80455949 GTACGGGGTG
* *
80455959 TTACAGAAAAGGGCTTATGCCCCAAT
1 TTACTGAAAAGGGCTT-TGCCCCAGT
*
80455985 TTATTGAAAAGGGCTTTGCCCCAGT
1 TTACTGAAAAGGGCTTTGCCCCAGT
80456010 TTACTGAAAAGGGCTTTGCCCCAGT
1 TTACTGAAAAGGGCTTTGCCCCAGT
80456035 T
1 T
80456036 ATTAAAGAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
25 33 0.70
26 14 0.30
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (25 bp):
TTACTGAAAAGGGCTTTGCCCCAGT
Found at i:80456239 original size:42 final size:42
Alignment explanation
Indices: 80456180--80456271 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
80456170 TAGTCTCCCC
* *** *
80456180 AAATGGGCTTGCATACATTCATTGGTTTTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80456222 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
80456264 AAATGGGC
1 AAATGGGC
80456272 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:80456372 original size:31 final size:31
Alignment explanation
Indices: 80456295--80456373 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
80456285 CGTTTATAGT
*
80456295 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
80456326 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
80456357 AAAGGCTTCGACCCAGT
1 AAAGGCTTCGGCCCAGT
80456374 AACTGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:80458676 original size:24 final size:24
Alignment explanation
Indices: 80458639--80458685 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
80458629 TAGCTTAACC
*
80458639 TAAATTAATAAAATAAAATAAATAA
1 TAAATTAACAAAATAAAA-AAATAA
80458664 TAAA-TAACAAAATAAAAAAATA
1 TAAATTAACAAAATAAAAAAATA
80458686 TCTTCCTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 5 0.24
24 12 0.57
25 4 0.19
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (24 bp):
TAAATTAACAAAATAAAAAAATAA
Found at i:80460700 original size:42 final size:43
Alignment explanation
Indices: 80460640--80460743 Score: 131
Period size: 42 Copynumber: 2.4 Consensus size: 43
80460630 ATGAGCTACG
* *
80460640 TGTAAGACCACGTTTGGGACATTAGCATCG-TATTTGATTT-CA
1 TGTAAGACCACGTCTGGGACAGTAGCATCGATATTTG-TTTACA
** *
80460682 TGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGTTTACA
1 TGTAAGACCACGTCTGGGACAGTAGCATCGATATTTGTTTACA
*
80460725 TGTAAGACCAGGTCTGGGA
1 TGTAAGACCACGTCTGGGA
80460744 TGTTGGCATT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 28 0.53
43 25 0.47
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTAGCATCGATATTTGTTTACA
Found at i:80460751 original size:43 final size:44
Alignment explanation
Indices: 80460581--80460752 Score: 149
Period size: 43 Copynumber: 4.0 Consensus size: 44
80460571 ACATAGGATC
* * * *
80460581 CGATATGTG-TTTTCATGTAAGACCACATCTAGGACGTTGGCAT
1 CGATATTTGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
* ** * * * *
80460624 CGACT-TATGAGCTACGTGTAAGACCACGTTTGGGACATTAGCAT
1 CGA-TATTTGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
**
80460668 CG-TATTTGATTT-CATGTAAGACCTTGTCTGGGACAG-TGGCAT
1 CGATATTTGATTTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
* *
80460710 CGATATTTG-TTTACATGTAAGACCAGGTCTGGGATGTTGGCAT
1 CGATATTTGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
80460753 TGTACGAGCT
Statistics
Matches: 100, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
42 30 0.30
43 42 0.42
44 28 0.28
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
CGATATTTGATTTACATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:80466855 original size:30 final size:30
Alignment explanation
Indices: 80466819--80466884 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
80466809 ACGGGTAGAG
80466819 ACACGGCCGTGTGTCTCAGCCATGTGTGAC
1 ACACGGCCGTGTGTCTCAGCCATGTGTGAC
80466849 ACACGGCCGTGTGTCTCAGCCATGTGTGAC
1 ACACGGCCGTGTGTCTCAGCCATGTGTGAC
80466879 ACACGG
1 ACACGG
80466885 TCAAGTGACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.21
Consensus pattern (30 bp):
ACACGGCCGTGTGTCTCAGCCATGTGTGAC
Found at i:80466875 original size:15 final size:15
Alignment explanation
Indices: 80466827--80466876 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
80466817 AGACACGGCC
80466827 GTGTGTCTCAGCCAT
1 GTGTGTCTCAGCCAT
* *
80466842 GTGTGACACACGGCC--
1 GTGTGTCTCA--GCCAT
80466857 GTGTGTCTCAGCCAT
1 GTGTGTCTCAGCCAT
80466872 GTGTG
1 GTGTG
80466877 ACACACGGTC
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
13 3 0.11
15 21 0.78
17 3 0.11
ACGTcount: A:0.14, C:0.26, G:0.32, T:0.28
Consensus pattern (15 bp):
GTGTGTCTCAGCCAT
Found at i:80471405 original size:27 final size:27
Alignment explanation
Indices: 80471356--80471675 Score: 394
Period size: 27 Copynumber: 11.9 Consensus size: 27
80471346 ATTATTGAAA
* * *
80471356 TACCCTCGACTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
80471383 TACCCTCGATTTGTAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
80471410 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* **
80471437 TACCCTC-AGTTTACAGAATTACTATTT
1 TACCCTCGA-TTTATAGAATTACCGTTT
80471464 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
80471491 TACCCT-AATTTACATAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
80471517 TACCC-CTGATTTACATAATTATCGTTT
1 TACCCTC-GATTTATAGAATTACCGTTT
* *
80471544 TACCCTCGACTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
80471571 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
80471598 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
80471625 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
80471652 TACCCTCGATTTACAAAATTACCG
1 TACCCTCGATTTATAGAATTACCG
80471676 AAATACCCTC
Statistics
Matches: 263, Mismatches: 25, Indels: 10
0.88 0.08 0.03
Matches are distributed among these distances:
26 23 0.09
27 238 0.90
28 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.10, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:80471682 original size:27 final size:27
Alignment explanation
Indices: 80471177--80471792 Score: 197
Period size: 27 Copynumber: 22.8 Consensus size: 27
80471167 AATACTTTGG
* * *
80471177 TTTACAAAATTACCAAAATACCCT-GC
1 TTTATAAAATTACCGAAATACCCTCGA
* ** * *
80471203 TTTGTAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCGAAATACCCTCGA
* *
80471230 TTTATAAAATTACCAAAATACCC-CTA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * *
80471256 GTTTGTAAAATTATCAAAATACCC-CTA
1 -TTTATAAAATTACCGAAATACCCTCGA
* * *
80471283 GTTTGTAAAATTACCAAAATACCC-CTAA
1 -TTTATAAAATTACCGAAATACCCTC-GA
* * *
80471311 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
** * **
80471338 CCTGTAAAATTATTGAAATACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * ***
80471365 CTTGTAAAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ***
80471392 TTTGTAAAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ***
80471419 TTTATAGAATTACCGTTTTACCCTC-A
1 TTTATAAAATTACCGAAATACCCTCGA
* * * **
80471445 GTTTACAGAATTA-CTATTTTACCCTCGA
1 -TTTATAAAATTACCGA-AATACCCTCGA
* *** *
80471473 TTTATAGAATTACCGTTTTACCCT-AA
1 TTTATAAAATTACCGAAATACCCTCGA
* * ***
80471499 TTTACATAATTACCGTTTTACCC-CTGA
1 TTTATAAAATTACCGAAATACCCTC-GA
* * * ***
80471526 TTTACATAATTATCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * ***
80471553 CTTACAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * ***
80471580 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * *** *
80471607 TTTATAGAATTACTGTTTTACCCTTGA
1 TTTATAAAATTACCGAAATACCCTCGA
* * * ***
80471634 TTTACAGAATTACTGTTTTACCCTCGA
1 TTTATAAAATTACCGAAATACCCTCGA
* *
80471661 TTTACAAAATTACCGAAATACCCTCAA
1 TTTATAAAATTACCGAAATACCCTCGA
* *
80471688 TTTGTAAAATTACCAAAATACCC-CTGA
1 TTTATAAAATTACCGAAATACCCTC-GA
* * * *
80471715 TTTACAAAGTTACAGAAATACCCTTGA
1 TTTATAAAATTACCGAAATACCCTCGA
* ** * * * *
80471742 CTTTTTAAAAATTATAGAAGTACCATTGG
1 -TTTAT-AAAATTACCGAAATACCCTCGA
* *
80471771 TTTACAAAATTACTGAAATACC
1 TTTATAAAATTACCGAAATACC
80471793 TTTGGTTTGT
Statistics
Matches: 497, Mismatches: 78, Indels: 29
0.82 0.13 0.05
Matches are distributed among these distances:
26 46 0.09
27 423 0.85
28 11 0.02
29 17 0.03
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTATAAAATTACCGAAATACCCTCGA
Found at i:80471699 original size:54 final size:54
Alignment explanation
Indices: 80471343--80471700 Score: 249
Period size: 54 Copynumber: 6.6 Consensus size: 54
80471333 CTCGACCTGT
** * * * **
80471343 AAAATTATTGAAATACCCTCGACTTGTAAAATTACCGTTTTACCCTCGATTTGT
1 AAAATTACCGAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTAC
*** * *
80471397 AAAATTACCGTTTTACCCTCGATTTATAGAATTACCGTTTTACCCTC-AGTTTAC
1 AAAATTACCGAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGA-TTTAC
* * ** * * *
80471451 AGAATTA-CTATTTTACCCTCGATTTATAGAATTACCGTTTTACCCT-AATTTAC
1 AAAATTACCGA-AATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTAC
* *** * * *
80471504 ATAATTACCGTTTTACCC-CTGATTTACATAATTA-TCGTTTTACCCTCGACTTAC
1 AAAATTACCGAAATACCCTC-GATTTATAAAATTACT-GTTTTACCCTCGATTTAC
* *** * * * *
80471558 AGAATTACCGTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTAT
1 AAAATTACCGAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTAC
* * *** * * *
80471612 AGAATTACTGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCGAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTAC
* *
80471666 AAAATTACCGAAATACCCTCAATTTGTAAAATTAC
1 AAAATTACCGAAATACCCTCGATTTATAAAATTAC
80471701 CAAAATACCC
Statistics
Matches: 255, Mismatches: 40, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.00
53 42 0.16
54 211 0.83
55 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTCGATTTATAAAATTACTGTTTTACCCTCGATTTAC
Found at i:80471797 original size:27 final size:26
Alignment explanation
Indices: 80471745--80471800 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
80471735 CCCTTGACTT
*
80471745 TTTAAAAATTATAGAAGTACCATTGG
1 TTTAAAAATTATAGAAATACCATTGG
*
80471771 TTTACAAAATTACT-GAAATACCTTTGG
1 TTTA-AAAATTA-TAGAAATACCATTGG
80471798 TTT
1 TTT
80471801 GTTGATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 21 0.81
28 1 0.04
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (26 bp):
TTTAAAAATTATAGAAATACCATTGG
Found at i:80471918 original size:27 final size:26
Alignment explanation
Indices: 80471853--80471918 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 26
80471843 TACCCCTAAA
*
80471853 AGGTAAAAAGACCGTAAAGCCCCTGT
1 AGGTAAAATGACCGTAAAGCCCCTGT
*
80471879 AGGTTAAAGTGACCGTAATA-CCCCTGT
1 AGG-TAAAATGACCGTAA-AGCCCCTGT
80471906 ATGGTAAAATGAC
1 A-GGTAAAATGAC
80471919 GAATATGCCC
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.09
27 28 0.82
28 3 0.09
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
AGGTAAAATGACCGTAAAGCCCCTGT
Found at i:80473105 original size:25 final size:25
Alignment explanation
Indices: 80473076--80473123 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80473066 TTATAATATG
* * *
80473076 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
80473101 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
80473124 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:80473192 original size:20 final size:20
Alignment explanation
Indices: 80473167--80473225 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
80473157 TAAATATGGT
80473167 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
80473187 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAA
80473207 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
80473226 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:80473303 original size:24 final size:24
Alignment explanation
Indices: 80473276--80473394 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
80473266 GAGGAAGTGA
*
80473276 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
80473300 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
80473323 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
80473347 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
80473371 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80473395 ATGATAAAGC
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
23 22 0.26
24 53 0.62
25 11 0.13
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:80473345 original size:47 final size:48
Alignment explanation
Indices: 80473276--80473394 Score: 170
Period size: 47 Copynumber: 2.5 Consensus size: 48
80473266 GAGGAAGTGA
80473276 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
** *
80473323 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
*
80473371 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
80473395 ATGATAAAGC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
47 43 0.66
48 11 0.17
49 11 0.17
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:80473628 original size:31 final size:31
Alignment explanation
Indices: 80473590--80473649 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
80473580 TACAGTAAAG
80473590 GCTTCGGCCCAGTAATATGAAATATGAAAAT
1 GCTTCGGCCCAGTAATATGAAATATGAAAAT
*
80473621 GCTTCGGCCCAGTATTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
80473650 TATAAAAGGG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.27
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAT
Found at i:80474980 original size:27 final size:27
Alignment explanation
Indices: 80474945--80475056 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
80474935 AGCATGGCTG
* *
80474945 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
80474971 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* * *
80474999 CCA-AAACAGAAATATGTGGTAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
80475026 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
80475053 CCAG
1 CCAG
80475057 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
26 6 0.08
27 50 0.69
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:80478612 original size:80 final size:80
Alignment explanation
Indices: 80478528--80478676 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
80478518 TATGGTAACC
* * * *
80478528 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
80478592 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
80478608 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
80478673 CCGG
66 CCGG
80478677 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:80478618 original size:40 final size:38
Alignment explanation
Indices: 80478569--80478676 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
80478559 ATCACGATTT
*
80478569 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
80478609 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
80478649 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
80478677 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:80485115 original size:39 final size:39
Alignment explanation
Indices: 80485072--80485213 Score: 178
Period size: 39 Copynumber: 3.6 Consensus size: 39
80485062 ACCAGATCGA
* * * * *
80485072 AGCCTGCGGGA-CTTTAGCCCAGACATATTTCCAGCACGT
1 AGCCTGC-GGACCTTAAGTCCAGATATAATTCCAGCACAT
* *
80485111 AGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACAT
1 AGCCTGCGGACCTTAAGTCCAGATATAATTCCAGCACAT
*
80485150 AGCCTGCGGACCTTAAGTCCAGATATAATTCCAGCATAT
1 AGCCTGCGGACCTTAAGTCCAGATATAATTCCAGCACAT
* *
80485189 AGCCTGTGGACCTTAAGTCCGGATA
1 AGCCTGCGGACCTTAAGTCCAGATA
80485214 AACATCACTG
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
38 3 0.03
39 87 0.97
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
AGCCTGCGGACCTTAAGTCCAGATATAATTCCAGCACAT
Found at i:80485138 original size:78 final size:77
Alignment explanation
Indices: 80485020--80485214 Score: 193
Period size: 78 Copynumber: 2.5 Consensus size: 77
80485010 ACTTGAAACC
** **
80485020 AATTACCAGCACA-AGCCTGCGGGAATTTAAACCCGGTATAATACCAG-ATCGA-AGCCTGCGGG
1 AATT-CCAGCACATAGCCTGC-GGACCTTAAGTCCGGTATAATACCAGCA-C-ATAGCCTGC-GG
*
80485082 A-CTTTAGCCCAGACAT
61 ACCTTAAGCCCAGACAT
* * *
80485098 ATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACATAGCCTGCGGACCT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGG-TATAATACCAGCACATAGCCTGCGGACCT
* *
80485163 TAAGTCCAGATAT
65 TAAGCCCAGACAT
* *
80485176 AATTCCAGCATATAGCCTGTGGACCTTAAGTCCGG-ATAA
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTATAA
80485215 ACATCACTGA
Statistics
Matches: 98, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
76 4 0.04
77 22 0.22
78 71 0.72
79 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (77 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTATAATACCAGCACATAGCCTGCGGACCTT
AAGCCCAGACAT
Found at i:80493556 original size:13 final size:13
Alignment explanation
Indices: 80493538--80493565 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
80493528 AAGTAATCGT
80493538 ACACGGGCGTGTC
1 ACACGGGCGTGTC
80493551 ACACGGGCGTGTC
1 ACACGGGCGTGTC
80493564 AC
1 AC
80493566 TACCGAGCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.18, C:0.32, G:0.36, T:0.14
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:80499293 original size:51 final size:51
Alignment explanation
Indices: 80499236--80499337 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
80499226 TTATCCGATG
80499236 AGTGATGATAAAGCTCACTTTTATGTTTCATAGCTTAAGTGCCAAATTATC
1 AGTGATGATAAAGCTCACTTTTATGTTTCATAGCTTAAGTGCCAAATTATC
80499287 AGTGATGATAAAGCTCACTTTTATGTTTCATAGCTTAAGTGCCAAATTATC
1 AGTGATGATAAAGCTCACTTTTATGTTTCATAGCTTAAGTGCCAAATTATC
80499338 TTAAAATGTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (51 bp):
AGTGATGATAAAGCTCACTTTTATGTTTCATAGCTTAAGTGCCAAATTATC
Found at i:80500299 original size:21 final size:24
Alignment explanation
Indices: 80500270--80500323 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 24
80500260 AATAAATTTA
80500270 ATACTCAATTTCAT-AACGAA-A-C
1 ATAC-CAATTTCATGAACGAATATC
*
80500292 ATACCAATTTCATGAACTAATATC
1 ATACCAATTTCATGAACGAATATC
80500316 ATACCAAT
1 ATACCAAT
80500324 CTATTTGTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 9 0.32
22 9 0.32
23 1 0.04
24 9 0.32
ACGTcount: A:0.44, C:0.22, G:0.04, T:0.30
Consensus pattern (24 bp):
ATACCAATTTCATGAACGAATATC
Found at i:80508225 original size:38 final size:40
Alignment explanation
Indices: 80508049--80508229 Score: 172
Period size: 40 Copynumber: 4.6 Consensus size: 40
80508039 CCGCACCAAG
* * * * * * *
80508049 GCCTACGGGACTTA-CCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
80508088 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
80508128 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
80508168 GCCTTCGGGTCTTAACCCGGATA-AATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
80508206 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
80508230 CATTCAATTT
Statistics
Matches: 120, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
38 28 0.23
39 17 0.14
40 73 0.61
41 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:80516317 original size:39 final size:40
Alignment explanation
Indices: 80516139--80516321 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
80516129 CCGCACCAAG
* * * * * * * *
80516139 GCCTACGGGACTTAACCCGGATATCACGATTTGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * *
80516179 GCCTTCGGGTCTTAGCCCGGATTTAACAACTTGCACGAA-T
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCAC-AATT
*
80516219 GCCTTCGGGTCTTAGCCCGGATATAGCTACTAGCACAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* * * *
80516259 GCCTTCGGGTCTTAACCCGGATATAATTTC-AGCATAATT
1 GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
* *
80516298 GTCTTCGGGGCTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
80516322 CATTCAATTT
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 31 0.25
40 89 0.73
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAACTACTAGCACAATT
Found at i:80519715 original size:22 final size:21
Alignment explanation
Indices: 80519690--80519753 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
80519680 ACTAATCATA
80519690 ACATATTATAAACATATCACAT
1 ACATATTA-AAACATATCACAT
* *
80519712 ACATAGTTAACACATTATCAAAT
1 ACATA-TTAAAACA-TATCACAT
80519735 -CATATTCAAAACAT-TCACA
1 ACATATT-AAAACATATCACA
80519754 ATGTCCCTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 4 0.11
21 3 0.09
22 18 0.51
23 10 0.29
ACGTcount: A:0.48, C:0.20, G:0.02, T:0.30
Consensus pattern (21 bp):
ACATATTAAAACATATCACAT
Found at i:80519943 original size:17 final size:19
Alignment explanation
Indices: 80519906--80519944 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
80519896 GTTCTCATTT
*
80519906 ATAACAAAAATCATATTTA
1 ATAACAAAAATCATATCTA
80519925 ATAAC-AAAA-CATATCTA
1 ATAACAAAAATCATATCTA
80519942 ATA
1 ATA
80519945 CCTATTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 10 0.53
18 4 0.21
19 5 0.26
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.28
Consensus pattern (19 bp):
ATAACAAAAATCATATCTA
Found at i:80521022 original size:50 final size:49
Alignment explanation
Indices: 80520935--80521148 Score: 191
Period size: 50 Copynumber: 4.3 Consensus size: 49
80520925 ATCACTCATT
* * * *
80520935 TGGCCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTATA
1 TGGCCGAATATACAA-ATCAAATATAACATCACATATGTACATACCTATA
* * * *
80520985 TGGCCGAATATGA-AAGATCAAATTTAACATCATATATGTACTTACTTATA
1 TGGCCGAATAT-ACAA-ATCAAATATAACATCACATATGTACATACCTATA
* * * * * *
80521035 TCGTCGGATATACAAATTC-AATATAATATCACATTTGTGCATACCT-TCA
1 TGGCCGAATATACAAA-TCAAATATAACATCACATATGTACATACCTAT-A
* * * *
80521084 TGGCCGAATATTCAAAATCCAATACAACATCACATATGTACATACCTATG
1 TGGCCGAATATAC-AAATCAAATATAACATCACATATGTACATACCTATA
80521134 TGGCCGAATATACAA
1 TGGCCGAATATACAA
80521149 GGTCATTTAG
Statistics
Matches: 131, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
48 1 0.01
49 36 0.27
50 92 0.70
51 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.11, T:0.30
Consensus pattern (49 bp):
TGGCCGAATATACAAATCAAATATAACATCACATATGTACATACCTATA
Found at i:80521145 original size:99 final size:100
Alignment explanation
Indices: 80520935--80521149 Score: 249
Period size: 99 Copynumber: 2.2 Consensus size: 100
80520925 ATCACTCATT
* * *
80520935 TGGCCAAATATACAAGATCAAATATAATATCACATATGTGCTTACCTATATGGCCGAATATGAAA
1 TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATATGGCCGAATATCAAA
** * * *
80521000 GATCAAATTTAACATCATATATGTACTTACTTATA
66 GATCAAATACAACATCACATATGTACATACCTATA
* * * *
80521035 TCGTCGGATATACAA-ATTC-AATATAATATCACATTTGTGCATACCT-TCATGGCCGAATATTC
1 TGGCCGAATATACAAGA-TCAAATATAATATCACATATGTGCATACCTAT-ATGGCCGAATA-TC
* *
80521097 AAA-ATCCAATACAACATCACATATGTACATACCTATG
63 AAAGATCAAATACAACATCACATATGTACATACCTATA
80521134 TGGCCGAATATACAAG
1 TGGCCGAATATACAAG
80521150 GTCATTTAGC
Statistics
Matches: 94, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
98 1 0.01
99 76 0.81
100 17 0.18
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (100 bp):
TGGCCGAATATACAAGATCAAATATAATATCACATATGTGCATACCTATATGGCCGAATATCAAA
GATCAAATACAACATCACATATGTACATACCTATA
Found at i:80525914 original size:27 final size:27
Alignment explanation
Indices: 80525870--80525922 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
80525860 GATCCCGATT
* *
80525870 TGTAAAATTACCGAAATACCCTTGTAG
1 TGTAAAATGACCGAAATACCCCTGTAG
* *
80525897 TGTAAAATGACTGTAATACCCCTGTA
1 TGTAAAATGACCGAAATACCCCTGTA
80525923 TGAAAGAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (27 bp):
TGTAAAATGACCGAAATACCCCTGTAG
Found at i:80526242 original size:22 final size:22
Alignment explanation
Indices: 80526181--80526297 Score: 119
Period size: 22 Copynumber: 5.3 Consensus size: 22
80526171 GCCTTTAGCT
*
80526181 GTCCTGTCTACGACGTTGAGTC
1 GTCCTGTCTACGACGTTGAGCC
* *
80526203 TTCCTGTCTACGACGTTGAGTC
1 GTCCTGTCTACGACGTTGAGCC
* **
80526225 GTCCTATCTACGGTGTTGAGCC
1 GTCCTGTCTACGACGTTGAGCC
* *
80526247 GTCCTGTCCACGATGTTGAGCC
1 GTCCTGTCTACGACGTTGAGCC
* * *
80526269 GTCCTGTTTAC-AGCATTAAGCC
1 GTCCTGTCTACGA-CGTTGAGCC
80526291 GTCCTGT
1 GTCCTGT
80526298 TGACTTAGTG
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
21 1 0.01
22 79 0.99
ACGTcount: A:0.15, C:0.28, G:0.25, T:0.32
Consensus pattern (22 bp):
GTCCTGTCTACGACGTTGAGCC
Found at i:80528667 original size:12 final size:13
Alignment explanation
Indices: 80528650--80528681 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80528640 GCAAATGTTA
80528650 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
80528662 AGTTTTGATGCAT
1 AGTTTTGATGCAT
80528675 -GTTTTGA
1 AGTTTTGA
80528682 AATGTGTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:80531018 original size:40 final size:40
Alignment explanation
Indices: 80530936--80531155 Score: 259
Period size: 40 Copynumber: 5.5 Consensus size: 40
80530926 TATTCGAATG
* *
80530936 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
80530976 ATATTCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
80531016 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
80531056 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * **
80531096 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
80531135 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
80531156 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
37 1 0.01
38 13 0.08
39 17 0.11
40 122 0.79
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:80535068 original size:114 final size:114
Alignment explanation
Indices: 80534844--80535060 Score: 337
Period size: 114 Copynumber: 1.9 Consensus size: 114
80534834 ATTTATAATC
** *
80534844 TAAGCAAGGCAAAATTGCATAGTAGCCCGTCTAGCTCAATCGGTAGAGCGCAAGGCTCTTAACCT
1 TAAGCAAGGCAAAATAACATAGTAGCCCATCTAGCTCAATCGGTAGAGCGCAAGGCTCTTAACCT
** *
80534909 TGTGGTTGTGGGTTCGAGCCCCACGGTGGGCGCATTTTTAATTTTCTGA
66 TGTGGTCATGGGTTCGAGCCCAACGGTGGGCGCATTTTTAATTTTCTGA
* * * *
80534958 TAAGGAAGGCAAAATAACGTAGTAGCCCATCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCT
1 TAAGCAAGGCAAAATAACATAGTAGCCCATCTAGCTCAATCGGTAGAGCGCAAGGCTCTTAACCT
80535023 TGTGGTCATGGGTTCGAGCCCAACGGTGGGCGC-TTTTT
66 TGTGGTCATGGGTTCGAGCCCAACGGTGGGCGCATTTTT
80535061 CTATTTTCGT
Statistics
Matches: 93, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
113 5 0.05
114 88 0.95
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (114 bp):
TAAGCAAGGCAAAATAACATAGTAGCCCATCTAGCTCAATCGGTAGAGCGCAAGGCTCTTAACCT
TGTGGTCATGGGTTCGAGCCCAACGGTGGGCGCATTTTTAATTTTCTGA
Found at i:80540325 original size:14 final size:14
Alignment explanation
Indices: 80540302--80540333 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
80540292 AAACATTTTT
80540302 ATAA-AATATACTA
1 ATAATAATATACTA
80540315 ATAATAATATACTA
1 ATAATAATATACTA
80540329 ATAAT
1 ATAAT
80540334 CAAGTATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATAATATACTA
Found at i:80542120 original size:35 final size:35
Alignment explanation
Indices: 80542076--80542210 Score: 173
Period size: 35 Copynumber: 3.8 Consensus size: 35
80542066 TAAAAAATAC
80542076 ATTAGGGTTTAGAATTTTTTTAAAAAAATTAATTAA
1 ATTAGGGTTTAGAA-TTTTTTAAAAAAATTAATTAA
* * ** **
80542112 TTTAGGTTTTAG-GGTTTTTAAGTAAATTAATTAA
1 ATTAGGGTTTAGAATTTTTTAAAAAAATTAATTAA
*
80542146 ATTAGGGTTTAGAATTTTTTAAAAAAATTAGTTAA
1 ATTAGGGTTTAGAATTTTTTAAAAAAATTAATTAA
*
80542181 ATTAGGGTTTAGGATTTTTTAAAAATAATT
1 ATTAGGGTTTAGAATTTTTTAAAAA-AATT
80542211 TTGTGTTTAG
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
34 28 0.34
35 41 0.49
36 14 0.17
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (35 bp):
ATTAGGGTTTAGAATTTTTTAAAAAAATTAATTAA
Found at i:80542744 original size:126 final size:126
Alignment explanation
Indices: 80542289--80542931 Score: 839
Period size: 126 Copynumber: 5.1 Consensus size: 126
80542279 GAATGATTTT
* * * *
80542289 TTTTTCTATAGTAGTTTCT-AAAAAATTAATTTTGAGAAAACGGTTCTGAAAAAATAATGACAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAA-TAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAA
* * * *
80542353 AACGTTTCAAGCAAGATGCACAGTCAGCAAAAGTACTG-AAAAAGCTCCTACGTGGACGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
* * * * * *
80542414 TTTTTCTATAGTAATTTTTGAAAAAATAA-TTTGAGAAGACAGTTCTGAAAAATTAATGTCAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* * * * * * *
80542478 ACGCTTCAAGCAGTATGCACTGTTAGCAAAAGTATTGAAAAAAGCTCCCACGTGGATGCTT
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
* *
80542539 TTTTTCTACAGTA-ATTCTTGAAAAAATAA-TTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTTC-TGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAA
* * * * *
80542602 AGCGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACACTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
* *
80542664 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
* *
80542729 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTATTGAAAAAAGCTCCTACATGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
* * *
80542790 TTTTTCTACAGTAGTTCCTG-AAAAATAATTGTGAAAAGACGGTTCTGAAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTG-AAAAAATAGTGTCAAA
* ** * * *
80542854 AACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTTTGCATGGACACTC
65 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
*
80542916 TTTTTCTACAATAGTT
1 TTTTTCTACAGTAGTT
80542932 CGTGCTTGGC
Statistics
Matches: 457, Mismatches: 55, Indels: 11
0.87 0.11 0.02
Matches are distributed among these distances:
124 64 0.14
125 193 0.42
126 200 0.44
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
Found at i:80542749 original size:251 final size:249
Alignment explanation
Indices: 80542287--80542931 Score: 864
Period size: 251 Copynumber: 2.6 Consensus size: 249
80542277 AAGAATGATT
* * * *
80542287 TTTTTTTCTATAGTAGTT-TCT-AAAAAATTAATTTTGAGAAAACGGTTCTGAAAAAATAATGAC
1 TTTTTTTCTACAGTAGTTCT-TGAAAAAA-TAA-TTTGAGAAGACGGTTCTGAAAAAATAGTGTC
* * * * * * *
80542350 AAAAACGTTTCAAGCAAGATGCACAGTCAGCAAAAGTACTGAAAAAGCTCCTACGTGGACGCTCT
63 AAAAACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTAAAAAAGCTCCTACGTGGACACTCT
* * * * *
80542415 TTTTCTATAGTAATTTTTGAAAAAATAATTTGAGAAGACAGTTCTGAAAAATTAATGTCAAAAAC
128 TTTTCTACAGTAGTTTCTGAAAAAATAATTTGAGAAGACAGTTCTGAAAAAATAATGTAAAAAAC
* * * *
80542480 GCTTCAAGCAGTATGCACTGTTAGCAAAAGTATTGAAAAAAGCTCCCACGTGGATGC
193 GCTTCAAGCAGGATGCACTGTCAGCAAAAGTATTGAAAAAAGCTCCCACATGGACGC
* *
80542537 TTTTTTTCTACAGTAATTCTTGAAAAAATAATTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAA
1 TTTTTTTCTACAGTAGTTCTTGAAAAAATAATTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAA
* *
80542602 AGCGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGGACACTCTTT
66 AACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACT-AAAAAAGCTCCTACGTGGACACTCTTT
* * *
80542667 TTCTACAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAGTGTAAAAAACG
130 TTCTACAGTAGTTTCTGAAAAAATAA-TTTGAGAAGACAGTTCTGAAAAAATAATGTAAAAAACG
* *
80542732 CTTCAAGCAGGATGCACTGTCAGCAAAATTATTGAAAAAAGCTCCTACATGGACGC
194 CTTCAAGCAGGATGCACTGTCAGCAAAAGTATTGAAAAAAGCTCCCACATGGACGC
* * *
80542788 TCTTTTTCTACAGTAGTTCCTG-AAAAATAATTGTGAAAAGACGGTTCTGAAAAAAATAGTGTCA
1 TTTTTTTCTACAGTAGTTCTTGAAAAAATAATT-TGAGAAGACGGTTCTG-AAAAAATAGTGTCA
** * *
80542852 AAAACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTTTTGCATGGACACTCT
64 AAAACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACT-AAAAAAGCTCCTACGTGGACACTCT
*
80542917 TTTTCTACAATAGTT
128 TTTTCTACAGTAGTT
80542932 CGTGCTTGGC
Statistics
Matches: 347, Mismatches: 42, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
249 61 0.18
250 77 0.22
251 123 0.35
252 86 0.25
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.29
Consensus pattern (249 bp):
TTTTTTTCTACAGTAGTTCTTGAAAAAATAATTTGAGAAGACGGTTCTGAAAAAATAGTGTCAAA
AACGCTTCAAGTAGGATGCACTGTCAGCAAAATTACTAAAAAAGCTCCTACGTGGACACTCTTTT
TCTACAGTAGTTTCTGAAAAAATAATTTGAGAAGACAGTTCTGAAAAAATAATGTAAAAAACGCT
TCAAGCAGGATGCACTGTCAGCAAAAGTATTGAAAAAAGCTCCCACATGGACGC
Found at i:80544544 original size:46 final size:44
Alignment explanation
Indices: 80544458--80544586 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 44
80544448 AGGGTATAAT
80544458 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CACATCTCG-AG
**
80544504 GCCGATGCATGTCTTAGACATGTCTTACACTAGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGAG
80544550 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACA
80544587 CAAATAGCCA
Statistics
Matches: 75, Mismatches: 4, Indels: 10
0.84 0.04 0.11
Matches are distributed among these distances:
44 14 0.19
45 14 0.19
46 47 0.63
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCACATCTCGAG
Found at i:80548619 original size:21 final size:21
Alignment explanation
Indices: 80548593--80548632 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
80548583 TTCGGGTGGA
**
80548593 TCAGCTCTTTTGAGCTTCTAT
1 TCAGCTCTTACGAGCTTCTAT
80548614 TCAGCTCTTACGAGCTTCT
1 TCAGCTCTTACGAGCTTCT
80548633 GTTGGTGTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTAT
Found at i:80556137 original size:42 final size:42
Alignment explanation
Indices: 80556086--80556192 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 42
80556076 CATATGAGTT
*
80556086 TTCA-TTTAACCCTAATGGGTTTCAATTCAA-CTCTTTTGAGC
1 TTCAGTTTAACCCTAATGGGTTTCAATT-AAGCTCTTATGAGC
* **
80556127 TTCAGTTTAACCCTTATGGGTTTCCGTTAAGCTCTTATGAGC
1 TTCAGTTTAACCCTAATGGGTTTCAATTAAGCTCTTATGAGC
* * * *
80556169 TTCCGTTCAACCCTCACGGGTTTC
1 TTCAGTTTAACCCTAATGGGTTTC
80556193 CGTTTAGCAC
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 6 0.11
42 50 0.89
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (42 bp):
TTCAGTTTAACCCTAATGGGTTTCAATTAAGCTCTTATGAGC
Found at i:80556163 original size:21 final size:21
Alignment explanation
Indices: 80556139--80556207 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
80556129 CAGTTTAACC
*
80556139 CTTATGGGTTTCCGTTAAGCT
1 CTTATGGGTTTCCGTTAAGCA
* * *
80556160 CTTATGAGCTTCCGTTCAA-CC
1 CTTATGGGTTTCCGTT-AAGCA
* * *
80556181 CTCACGGGTTTCCGTTTAGCA
1 CTTATGGGTTTCCGTTAAGCA
80556202 CTTATG
1 CTTATG
80556208 TGCTTCTGTG
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
20 1 0.03
21 32 0.91
22 2 0.06
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.38
Consensus pattern (21 bp):
CTTATGGGTTTCCGTTAAGCA
Found at i:80556193 original size:42 final size:42
Alignment explanation
Indices: 80556116--80556213 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
80556106 TTCAATTCAA
* * * *
80556116 CTCTTTTGAGCTTCAGTTTAACCCTTATGGGTTTCCGTTAAG
1 CTCTTATGAGCTTCAGTTCAACCCTCACGGGTTTCCGTTAAG
* *
80556158 CTCTTATGAGCTTCCGTTCAACCCTCACGGGTTTCCGTTTAG
1 CTCTTATGAGCTTCAGTTCAACCCTCACGGGTTTCCGTTAAG
* *
80556200 CACTTATGTGCTTC
1 CTCTTATGAGCTTC
80556214 TGTGCAGCAT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.15, C:0.27, G:0.18, T:0.40
Consensus pattern (42 bp):
CTCTTATGAGCTTCAGTTCAACCCTCACGGGTTTCCGTTAAG
Found at i:80571874 original size:15 final size:16
Alignment explanation
Indices: 80571849--80571878 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
80571839 TATAAAATCG
80571849 ATGATATGAGGTTTAC
1 ATGATATGAGGTTTAC
80571865 ATGA-ATGAGGTTTA
1 ATGATATGAGGTTTA
80571879 TCAAGGTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.33, C:0.03, G:0.27, T:0.37
Consensus pattern (16 bp):
ATGATATGAGGTTTAC
Found at i:80576539 original size:47 final size:47
Alignment explanation
Indices: 80576467--80576666 Score: 274
Period size: 47 Copynumber: 4.2 Consensus size: 47
80576457 CCCTTCGGGA
* * * * * * *
80576467 CTTATCACATTTATACACTTCCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
80576514 CCTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80576561 CTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80576608 CTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
80576657 CTTATCACAT
1 CTTATCACAT
80576667 GTGTATCCAT
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
47 96 0.70
49 42 0.30
ACGTcount: A:0.28, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80576545 original size:25 final size:24
Alignment explanation
Indices: 80576517--80576595 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
80576507 ACTCGGCCCT
80576517 ATCACATATATACACTTTCACATTC
1 ATCACATATATACAC-TTCACATTC
* * *
80576542 ATCACAT-TGGT-CA-TTCGGCCTT-
1 ATCACATAT-ATACACTTC-ACATTC
80576564 ATCACATATATACACCTTCACATTC
1 ATCACATATATACA-CTTCACATTC
80576589 ATCACAT
1 ATCACAT
80576596 CGGCCATTAG
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (24 bp):
ATCACATATATACACTTCACATTC
Found at i:80576677 original size:74 final size:74
Alignment explanation
Indices: 80576599--80576740 Score: 284
Period size: 74 Copynumber: 1.9 Consensus size: 74
80576589 ATCACATCGG
80576599 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
80576664 CATGTGTAT
66 CATGTGTAT
80576673 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
80576738 CAT
66 CAT
80576741 ATATACACAC
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (74 bp):
CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
CATGTGTAT
Found at i:80576728 original size:49 final size:49
Alignment explanation
Indices: 80576673--80576843 Score: 333
Period size: 49 Copynumber: 3.5 Consensus size: 49
80576663 ACATGTGTAT
80576673 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
80576722 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
*
80576771 CCATTAGGCCTTATCACATATATACACAATTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
80576820 CCATTAGGCCTTATCACATATATA
1 CCATTAGGCCTTATCACATATATA
80576844 TATCTCATAC
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 121 1.00
ACGTcount: A:0.32, C:0.29, G:0.08, T:0.31
Consensus pattern (49 bp):
CCATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGG
Found at i:80576734 original size:123 final size:121
Alignment explanation
Indices: 80576553--80576789 Score: 447
Period size: 123 Copynumber: 1.9 Consensus size: 121
80576543 TCACATTGGT
*
80576553 CATTCGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
1 CATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
80576618 ATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTGTATC
66 ATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTGTATC
80576674 CATTAGGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 CATTAGGCCTTATCACATATATACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCAC
80576739 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
64 ATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
80576790 ATATACACAA
Statistics
Matches: 113, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
121 25 0.22
122 1 0.01
123 87 0.77
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.31
Consensus pattern (121 bp):
CATTAGGCCTTATCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
ATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTGTATC
Found at i:80576793 original size:172 final size:168
Alignment explanation
Indices: 80576511--80576838 Score: 575
Period size: 172 Copynumber: 1.9 Consensus size: 168
80576501 TTGGCCACTC
* * *
80576511 GGCCCTATCACATATATACACTTTCACATTCATCACATTGGTCATTCGGCCTTATCACATATATA
1 GGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
80576576 CACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACACTTTCACATTCATC
66 CACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAATTTCACATTCATC
80576641 ACATCGGCCATTAGGCCTTATCACATGTGTATCCATTA
131 ACATCGGCCATTAGGCCTTATCACATGTGTATCCATTA
*
80576679 GGCCTTATCACATATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 GGCCCTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
80576744 TACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAATTTCACATT
64 TACAC-C-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAATTTCACATT
80576809 CATCACATCGGCCATTAGGCCTTATCACAT
127 CATCACATCGGCCATTAGGCCTTATCACAT
80576839 ATATATATCT
Statistics
Matches: 151, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
168 16 0.11
170 48 0.32
171 1 0.01
172 86 0.57
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (168 bp):
GGCCCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACCTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACAATTTCACATTCATC
ACATCGGCCATTAGGCCTTATCACATGTGTATCCATTA
Found at i:80580186 original size:23 final size:21
Alignment explanation
Indices: 80580160--80580203 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
80580150 TCAAGTTAGA
*
80580160 TGTTAGAGTTGGCTTGGTTATAT
1 TGTTAGAATTGG-TTGG-TATAT
*
80580183 TGTTTGAATTGGTTGGTATAT
1 TGTTAGAATTGGTTGGTATAT
80580204 GTTTGCAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 4 0.21
23 10 0.53
ACGTcount: A:0.18, C:0.02, G:0.30, T:0.50
Consensus pattern (21 bp):
TGTTAGAATTGGTTGGTATAT
Found at i:80583666 original size:13 final size:13
Alignment explanation
Indices: 80583648--80583674 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
80583638 GTTTAATTAG
80583648 TTAATTAGTTTAA
1 TTAATTAGTTTAA
80583661 TTAATTAGTTTAA
1 TTAATTAGTTTAA
80583674 T
1 T
80583675 AAACAACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (13 bp):
TTAATTAGTTTAA
Found at i:80583674 original size:9 final size:9
Alignment explanation
Indices: 80583635--80583663 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
80583625 TCTCTTTGCT
80583635 TTAGTTTAA
1 TTAGTTTAA
80583644 TTAG-TTAA
1 TTAGTTTAA
80583652 TTAGTTTAA
1 TTAGTTTAA
80583661 TTA
1 TTA
80583664 ATTAGTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
8 8 0.42
9 11 0.58
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (9 bp):
TTAGTTTAA
Found at i:80586118 original size:60 final size:60
Alignment explanation
Indices: 80586025--80586144 Score: 240
Period size: 60 Copynumber: 2.0 Consensus size: 60
80586015 ATCATCTCAG
80586025 GAGTATACGCAACCAAAGTCGTTGACTGAAGAGCCAGCTAAATTGGAACTGAAGATTTTT
1 GAGTATACGCAACCAAAGTCGTTGACTGAAGAGCCAGCTAAATTGGAACTGAAGATTTTT
80586085 GAGTATACGCAACCAAAGTCGTTGACTGAAGAGCCAGCTAAATTGGAACTGAAGATTTTT
1 GAGTATACGCAACCAAAGTCGTTGACTGAAGAGCCAGCTAAATTGGAACTGAAGATTTTT
80586145 TCTCCTCATT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (60 bp):
GAGTATACGCAACCAAAGTCGTTGACTGAAGAGCCAGCTAAATTGGAACTGAAGATTTTT
Found at i:80591542 original size:40 final size:40
Alignment explanation
Indices: 80591505--80591635 Score: 122
Period size: 40 Copynumber: 3.3 Consensus size: 40
80591495 GCTACTCGTT
* *
80591505 CAAACGCCTTCGGGACGTAGCCCCG-TTATAGTAACTCGCA
1 CAAACGCCTTCGAGACGTAACCCCGATT-TAGTAACTCGCA
* * *
80591545 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAACGCCTTCGAGACGTAACCCCGATTTAGTAACTCGCA
* * * * * * *
80591585 CCAATGCCTTCG-GGCTTAGCCCGGAATTAGTAACTCGCA
1 CAAACGCCTTCGAGACGTAACCCCGATTTAGTAACTCGCA
*
80591624 CAAATGCCTTCG
1 CAAACGCCTTCG
80591636 GATCTTAGTC
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 35 0.44
40 43 0.54
41 2 0.03
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAACGCCTTCGAGACGTAACCCCGATTTAGTAACTCGCA
Found at i:80591616 original size:79 final size:80
Alignment explanation
Indices: 80591505--80591689 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
80591495 GCTACTCGTT
* * *
80591505 CAAACGCCTTCGGGACGTAGCCCCG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCC
* *
80591568 GGATTTAGTAAC-TCGCA
63 GGATATAGTAACTTAGCA
* **
80591585 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 -CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
80591649 ATATAGTCACTTAGCA
65 ATATAGTAACTTAGCA
*
80591665 TAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
80591690 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.02
79 59 0.66
80 25 0.28
81 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:80591619 original size:39 final size:39
Alignment explanation
Indices: 80591533--80591689 Score: 174
Period size: 40 Copynumber: 3.9 Consensus size: 39
80591523 AGCCCCGTTA
* * *
80591533 TAGTAACTCGCACAAATGCCTTCGAGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCG-GGCTTAGCCCGGAAT
*
80591573 TAGTAACTCGCACCAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
* *
80591612 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGAAT
* * *
80591651 ATAGTCACTTAGCATAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGA
80591690 CATCATTCGA
Statistics
Matches: 100, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
39 38 0.38
40 55 0.55
41 7 0.07
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
Found at i:80594203 original size:20 final size:20
Alignment explanation
Indices: 80594180--80594225 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
80594170 TTTATCTATA
* *
80594180 TCAATAGTAATTCATTCATT
1 TCAACAGTAATTCATCCATT
*
80594200 TCAACATTAATTCATCCATT
1 TCAACAGTAATTCATCCATT
80594220 TCAACA
1 TCAACA
80594226 TAGCTTATTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.22, G:0.02, T:0.39
Consensus pattern (20 bp):
TCAACAGTAATTCATCCATT
Found at i:80594226 original size:20 final size:20
Alignment explanation
Indices: 80594187--80594226 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
80594177 ATATCAATAG
*
80594187 TAATTCATTCATTTCAACAT
1 TAATTCATCCATTTCAACAT
80594207 TAATTCATCCATTTCAACAT
1 TAATTCATCCATTTCAACAT
80594227 AGCTTATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTCATCCATTTCAACAT
Found at i:80594447 original size:22 final size:23
Alignment explanation
Indices: 80594419--80594621 Score: 78
Period size: 24 Copynumber: 8.6 Consensus size: 23
80594409 GCTGAAATGG
*
80594419 TAAGCTC-TATCGAGCTAAA-CAA
1 TAAGCTCATAT-GAGCGAAATCAA
*
80594441 TAAGCTCATATGAGCGAAATCAG
1 TAAGCTCATATGAGCGAAATCAA
* *
80594464 TAAGCTCCA-ATAAGCTGAAAAT-AG
1 TAAGCT-CATATGAGC-G-AAATCAA
* **
80594488 TAAGCTCTTATGAGCTG-AATCGG
1 TAAGCTCATATGAGC-GAAATCAA
* *
80594511 TAAGCTCCA-ATGAGCTGAAAACAG
1 TAAGCT-CATATGAGC-GAAATCAA
** * * *
80594535 TAAGCTTTTACGAGCTAAATCAG
1 TAAGCTCATATGAGCGAAATCAA
* *
80594558 TAAGCTCCA-ATGAGCTGAAAACAG
1 TAAGCT-CATATGAGC-GAAATCAA
* * *
80594582 TAAGCTCTTTTGAGCTGATATATCGA
1 TAAGCTCATATGAGC-GA-A-ATCAA
80594608 TAAGCTCATATGAG
1 TAAGCTCATATGAG
80594622 TTGTGGTGAG
Statistics
Matches: 140, Mismatches: 26, Indels: 26
0.73 0.14 0.14
Matches are distributed among these distances:
22 17 0.12
23 50 0.36
24 54 0.39
25 5 0.04
26 14 0.10
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (23 bp):
TAAGCTCATATGAGCGAAATCAA
Found at i:80594469 original size:23 final size:24
Alignment explanation
Indices: 80594393--80594621 Score: 169
Period size: 23 Copynumber: 9.7 Consensus size: 24
80594383 AGCTAATAAA
*
80594393 CAGTAAGCT-TTATTGAGCTGAAAT
1 CAGTAAGCTCATA-TGAGCTGAAAT
*
80594417 -GGTAAGCTC-TATCGAGCT-AAA-
1 CAGTAAGCTCATAT-GAGCTGAAAT
*
80594438 CAATAAGCTCATATGAGC-GAAAT
1 CAGTAAGCTCATATGAGCTGAAAT
*
80594461 CAGTAAGCTCCA-ATAAGCTGAAAAT
1 CAGTAAGCT-CATATGAGCTG-AAAT
*
80594486 -AGTAAGCTCTTATGAGCTG-AAT
1 CAGTAAGCTCATATGAGCTGAAAT
* *
80594508 CGGTAAGCTCCA-ATGAGCTGAAAA
1 CAGTAAGCT-CATATGAGCTGAAAT
** *
80594532 CAGTAAGCTTTTACGAGCT-AAAT
1 CAGTAAGCTCATATGAGCTGAAAT
*
80594555 CAGTAAGCTCCA-ATGAGCTGAAAA
1 CAGTAAGCT-CATATGAGCTGAAAT
* *
80594579 CAGTAAGCTCTTTTGAGCTGATATAT
1 CAGTAAGCTCATATGAGCTGA-A-AT
80594605 C-GATAAGCTCATATGAG
1 CAG-TAAGCTCATATGAG
80594622 TTGTGGTGAG
Statistics
Matches: 161, Mismatches: 24, Indels: 38
0.72 0.11 0.17
Matches are distributed among these distances:
22 21 0.13
23 65 0.40
24 55 0.34
25 6 0.04
26 14 0.09
ACGTcount: A:0.36, C:0.17, G:0.21, T:0.26
Consensus pattern (24 bp):
CAGTAAGCTCATATGAGCTGAAAT
Found at i:80594489 original size:24 final size:25
Alignment explanation
Indices: 80594441--80594588 Score: 145
Period size: 24 Copynumber: 6.3 Consensus size: 25
80594431 AGCTAAACAA
80594441 TAAGCT-CATATGAGC-G-AAATCAG
1 TAAGCTCCA-ATGAGCTGAAAATCAG
*
80594464 TAAGCTCCAATAAGCTGAAAAT-AG
1 TAAGCTCCAATGAGCTGAAAATCAG
** *
80594488 TAAGCTCTTATGAGCTG--AATCGG
1 TAAGCTCCAATGAGCTGAAAATCAG
80594511 TAAGCTCCAATGAGCTGAAAA-CAG
1 TAAGCTCCAATGAGCTGAAAATCAG
*** *
80594535 TAAGCTTTTACGAGCT--AAATCAG
1 TAAGCTCCAATGAGCTGAAAATCAG
80594558 TAAGCTCCAATGAGCTGAAAA-CAG
1 TAAGCTCCAATGAGCTGAAAATCAG
80594582 TAAGCTC
1 TAAGCTC
80594589 TTTTGAGCTG
Statistics
Matches: 100, Mismatches: 16, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
22 6 0.06
23 42 0.42
24 43 0.43
25 9 0.09
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (25 bp):
TAAGCTCCAATGAGCTGAAAATCAG
Found at i:80594500 original size:47 final size:47
Alignment explanation
Indices: 80594390--80594596 Score: 237
Period size: 47 Copynumber: 4.4 Consensus size: 47
80594380 CTAAGCTAAT
* *
80594390 AAACAGTAAGCT-TTATTGAGCTGAAAT-GGTAAGCT-CTATCGAGCT--
1 AAACAGTAAGCTCTTA-TGAGC-GAAATCAGTAAGCTCCAAT-GAGCTGA
* * *
80594435 AAACAATAAGCTCATATGAGCGAAATCAGTAAGCTCCAATAAGCTGA
1 AAACAGTAAGCTCTTATGAGCGAAATCAGTAAGCTCCAATGAGCTGA
* *
80594482 AAATAGTAAGCTCTTATGAGCTG-AATCGGTAAGCTCCAATGAGCTGA
1 AAACAGTAAGCTCTTATGAGC-GAAATCAGTAAGCTCCAATGAGCTGA
* * *
80594529 AAACAGTAAGCTTTTACGAGCTAAATCAGTAAGCTCCAATGAGCTGA
1 AAACAGTAAGCTCTTATGAGCGAAATCAGTAAGCTCCAATGAGCTGA
*
80594576 AAACAGTAAGCTCTTTTGAGC
1 AAACAGTAAGCTCTTATGAGC
80594597 TGATATATCG
Statistics
Matches: 137, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
44 5 0.04
45 27 0.20
46 5 0.04
47 99 0.72
48 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (47 bp):
AAACAGTAAGCTCTTATGAGCGAAATCAGTAAGCTCCAATGAGCTGA
Found at i:80594561 original size:94 final size:91
Alignment explanation
Indices: 80594381--80594599 Score: 271
Period size: 94 Copynumber: 2.4 Consensus size: 91
80594371 AAGCTCCTCC
* *
80594381 TAAGCTAATAAACAGTAAGCT-TTATTGAGCTGAAATGGTAAGCTCTATCGAGCTAAACAATAAG
1 TAAGCTGA-AAACAGTAAGCTCTTA-TGAGCTG-AATGGTAAGCTCAATCGAGCTAAACAATAAG
*
80594445 CTCATATGAGCGAAATCAGTAAGCTCCAA
63 CTCATACGAGCGAAATCAGTAAGCTCCAA
* *
80594474 TAAGCTGAAAATAGTAAGCTCTTATGAGCTGAATCGGTAAGCTCCAAT-GAGCTGAAAACAGTAA
1 TAAGCTGAAAACAGTAAGCTCTTATGAGCTGAAT-GGTAAGCT-CAATCGAGCT--AAACAATAA
** *
80594538 GCTTTTACGAGCTAAATCAGTAAGCTCCAA
62 GCTCATACGAGCGAAATCAGTAAGCTCCAA
* *
80594568 TGAGCTGAAAACAGTAAGCTCTTTTGAGCTGA
1 TAAGCTGAAAACAGTAAGCTCTTATGAGCTGA
80594600 TATATCGATA
Statistics
Matches: 110, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
91 3 0.03
92 31 0.28
93 13 0.12
94 63 0.57
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (91 bp):
TAAGCTGAAAACAGTAAGCTCTTATGAGCTGAATGGTAAGCTCAATCGAGCTAAACAATAAGCTC
ATACGAGCGAAATCAGTAAGCTCCAA
Found at i:80597065 original size:36 final size:36
Alignment explanation
Indices: 80597018--80597089 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
80597008 ACAAAAAGAA
80597018 AACTTTTAATAATGCTATTCTTTTGTTTTTTAGCTC
1 AACTTTTAATAATGCTATTCTTTTGTTTTTTAGCTC
80597054 AACTTTTAATAATGCTATTCTTTTGTTTTTTAGCTC
1 AACTTTTAATAATGCTATTCTTTTGTTTTTTAGCTC
80597090 TTTGATATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.14, G:0.08, T:0.56
Consensus pattern (36 bp):
AACTTTTAATAATGCTATTCTTTTGTTTTTTAGCTC
Found at i:80601019 original size:2 final size:2
Alignment explanation
Indices: 80601012--80601040 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
80601002 GGAATTTCTG
80601012 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
80601041 TCATCAGTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80601400 original size:20 final size:20
Alignment explanation
Indices: 80601341--80601429 Score: 85
Period size: 20 Copynumber: 4.5 Consensus size: 20
80601331 TGTATAAACT
*
80601341 GTAATTCATTCATAT-AACCA
1 GTAATTCATTCATATCAA-TA
*
80601361 GTAGTTCA-TCAATAAT-AATA
1 GTAATTCATTC-AT-ATCAATA
*
80601381 GTAATTCATTCGTATCAATA
1 GTAATTCATTCATATCAATA
* *
80601401 GTAATTCATTCATTTCAACA
1 GTAATTCATTCATATCAATA
80601421 GTAATTCAT
1 GTAATTCAT
80601430 CCATTTCAAC
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
19 4 0.07
20 48 0.83
21 6 0.10
ACGTcount: A:0.38, C:0.16, G:0.08, T:0.38
Consensus pattern (20 bp):
GTAATTCATTCATATCAATA
Found at i:80601434 original size:20 final size:20
Alignment explanation
Indices: 80601380--80601440 Score: 86
Period size: 20 Copynumber: 3.0 Consensus size: 20
80601370 CAATAATAAT
* * *
80601380 AGTAATTCATTCGTATCAAT
1 AGTAATTCATTCATTTCAAC
80601400 AGTAATTCATTCATTTCAAC
1 AGTAATTCATTCATTTCAAC
*
80601420 AGTAATTCATCCATTTCAAC
1 AGTAATTCATTCATTTCAAC
80601440 A
1 A
80601441 TAGCTTATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.38
Consensus pattern (20 bp):
AGTAATTCATTCATTTCAAC
Found at i:80601659 original size:22 final size:22
Alignment explanation
Indices: 80601629--80601670 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
80601619 TATTGAGCTG
*
80601629 AAACGGTAAGCTCTTT-CGAGTT
1 AAACAGTAAGCT-TTTACGAGTT
80601651 AAACAGTAAGCTTTTACGAG
1 AAACAGTAAGCTTTTACGAG
80601671 CTGAATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (22 bp):
AAACAGTAAGCTTTTACGAGTT
Found at i:80601711 original size:24 final size:24
Alignment explanation
Indices: 80601596--80601758 Score: 95
Period size: 23 Copynumber: 6.9 Consensus size: 24
80601586 AAGCTCCTCC
* *
80601596 TGAGCTGATAAACAGTAAGGCCCTAT
1 TGAGCTGA-AAACAGTAA-GCTCTAA
* *
80601622 TGAGCTG-AAACGGTAAGCTCT-T
1 TGAGCTGAAAACAGTAAGCTCTAA
* * *
80601644 TCGAG-T-TAAACAGTAAGCTTTTA
1 T-GAGCTGAAAACAGTAAGCTCTAA
* ***
80601667 CGAGCTGAATTGA-TAAGCTCTAA
1 TGAGCTGAAAACAGTAAGCTCTAA
*
80601690 TGAGCTGAAAACAGTAAGCTCTTA
1 TGAGCTGAAAACAGTAAGCTCTAA
* * * *
80601714 CGAGCTG-AATCGGTAAGCTCCAA
1 TGAGCTGAAAACAGTAAGCTCTAA
* *
80601737 TAAGCTGAAAATAGTAAGCTCT
1 TGAGCTGAAAACAGTAAGCTCT
80601759 TTCGAGCTGA
Statistics
Matches: 102, Mismatches: 28, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
22 18 0.18
23 42 0.41
24 35 0.34
26 7 0.07
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTAA
Found at i:80601715 original size:47 final size:47
Alignment explanation
Indices: 80601651--80601768 Score: 173
Period size: 47 Copynumber: 2.5 Consensus size: 47
80601641 CTTTCGAGTT
* * * *
80601651 AAACAGTAAGCTTTTACGAGCTGAATTGATAAGCTCTAATGAGCTGA
1 AAACAGTAAGCTCTTACGAGCTGAATCGATAAGCTCCAATAAGCTGA
*
80601698 AAACAGTAAGCTCTTACGAGCTGAATCGGTAAGCTCCAATAAGCTGA
1 AAACAGTAAGCTCTTACGAGCTGAATCGATAAGCTCCAATAAGCTGA
* *
80601745 AAATAGTAAGCTCTTTCGAGCTGA
1 AAACAGTAAGCTCTTACGAGCTGA
80601769 TATATCCATA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (47 bp):
AAACAGTAAGCTCTTACGAGCTGAATCGATAAGCTCCAATAAGCTGA
Found at i:80601766 original size:24 final size:24
Alignment explanation
Indices: 80601634--80601768 Score: 72
Period size: 24 Copynumber: 5.8 Consensus size: 24
80601624 AGCTGAAACG
* *
80601634 GTAAGCTCTTTCGAG-T-TAAACA
1 GTAAGCTCTTTCGAGCTGAAAATA
*
80601656 GTAAGCT-TTTACGAGCTG--AATT
1 GTAAGCTCTTT-CGAGCTGAAAATA
* *
80601678 GATAAGCTCTAAT-GAGCTGAAAACA
1 G-TAAGCTCT-TTCGAGCTGAAAATA
* *
80601703 GTAAGCTCTTACGAGCTG--AATCG
1 GTAAGCTCTTTCGAGCTGAAAAT-A
** *
80601726 GTAAGCTCCAAT-AAGCTGAAAATA
1 GTAAGCT-CTTTCGAGCTGAAAATA
80601750 GTAAGCTCTTTCGAGCTGA
1 GTAAGCTCTTTCGAGCTGA
80601769 TATATCCATA
Statistics
Matches: 82, Mismatches: 17, Indels: 26
0.66 0.14 0.21
Matches are distributed among these distances:
21 3 0.04
22 16 0.20
23 27 0.33
24 29 0.35
25 7 0.09
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (24 bp):
GTAAGCTCTTTCGAGCTGAAAATA
Found at i:80602977 original size:11 final size:11
Alignment explanation
Indices: 80602948--80602991 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
80602938 AATTATTAAC
80602948 ATAATGAATTTT
1 ATAAT-AATTTT
80602960 A-AATAATTTT
1 ATAATAATTTT
80602970 ATAATAATTTT
1 ATAATAATTTT
* *
80602981 TTATTAATTTT
1 ATAATAATTTT
80602992 GATCGTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 7 0.24
11 21 0.72
12 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (11 bp):
ATAATAATTTT
Found at i:80605498 original size:49 final size:48
Alignment explanation
Indices: 80605384--80605564 Score: 174
Period size: 48 Copynumber: 3.8 Consensus size: 48
80605374 ACATGGGATA
*
80605384 AGATGTCGACGCCATGTCCCAAACATGGTCTTACACTGGCTAGCACATC
1 AGATGTCGATGCCATGTCCCAAACA-GGTCTTACACTGGCTAGCACATC
* * *
80605433 A-AAGTCGATGCCATGTCCCAGACAGGTCTTACACTGGC-A-CTCATC
1 AGATGTCGATGCCATGTCCCAAACAGGTCTTACACTGGCTAGCACATC
* * * *
80605478 TATTGATGTCGATGCCATGTCCCAAACAGGTCTTACACTAGCTTGTATATC
1 -A--GATGTCGATGCCATGTCCCAAACAGGTCTTACACTGGCTAGCACATC
* * *
80605529 TCGA-GGCTGATG-CATGTCCCAAACATGTCTTACACT
1 -AGATGTC-GATGCCATGTCCCAAACAGGTCTTACACT
80605565 AGCTCTCGTC
Statistics
Matches: 111, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
45 5 0.05
46 2 0.02
47 14 0.13
48 45 0.41
49 41 0.37
51 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
AGATGTCGATGCCATGTCCCAAACAGGTCTTACACTGGCTAGCACATC
Found at i:80605559 original size:97 final size:97
Alignment explanation
Indices: 80605385--80605564 Score: 238
Period size: 97 Copynumber: 1.9 Consensus size: 97
80605375 CATGGGATAA
* *
80605385 GATGTCGACGCCATGTCCCAAACATGGTCTTACACTGGCTAGCACATCAAAGTCGATGCCATGTC
1 GATGTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTAGCACATCAAAGGCGATGCCATGTC
*
80605450 CCAGACAGGTCTTACACTGGCACTCATCTATT
66 CCAAACAGGTCTTACACTGGCACTCATCTATT
* * * * **
80605482 GATGTCGATGCCATGTCCCAAACA-GGTCTTACACTAGCTTGTATATCTCGAGGCTGATG-CATG
1 GATGTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTAGCACATC-AAAGGC-GATGCCATG
*
80605545 TCCCAAACATGTCTTACACT
64 TCCCAAACAGGTCTTACACT
80605565 AGCTCTCGTC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
96 19 0.27
97 48 0.68
98 4 0.06
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (97 bp):
GATGTCGACGCCATGTCCCAAACATGGTCTTACACTAGCTAGCACATCAAAGGCGATGCCATGTC
CCAAACAGGTCTTACACTGGCACTCATCTATT
Found at i:80605560 original size:48 final size:46
Alignment explanation
Indices: 80605396--80605619 Score: 161
Period size: 49 Copynumber: 4.7 Consensus size: 46
80605386 ATGTCGACGC
* **
80605396 CATGTCCCAAACATGGTCTTACACTGGCTAGCA-CATCAAAG-TCGATG
1 CATGTCCCAAACAT-GTCTTACACTAGCTCTCATC-TCAAAGCT-GATG
* * * * *
80605443 CCATGTCCCAGACAGGTCTTACACTGGCACTCATCT-ATTGATG-TCGATG
1 -CATGTCCCAAACATGTCTTACACTAGCTCTCATCTCA---AAGCT-GATG
* * * * *
80605492 CCATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 -CATGTCCCAAACATGTCTTACACTAGC-TCT-CATCTCAAAGCTGATG
*
80605541 CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAAAGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAAAGCTGATG
* *
80605587 CATGTCCCCGAA-ATGTCTTACACTGGCTCTCAT
1 CATGT-CCCAAACATGTCTTACACTAGCTCTCAT
80605620 AATGTGGTAG
Statistics
Matches: 145, Mismatches: 22, Indels: 20
0.78 0.12 0.11
Matches are distributed among these distances:
46 37 0.26
47 23 0.16
48 39 0.27
49 40 0.28
50 2 0.01
51 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAAAGCTGATG
Found at i:80608301 original size:26 final size:25
Alignment explanation
Indices: 80608245--80608301 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 25
80608235 ATTGTTATAA
* * *
80608245 AAAATTA-TTAAATAAAAATTAATT
1 AAAATTACATAAATAAAAAATAAAT
80608269 AAAATTACATAAATAAAAAAATAAAT
1 AAAATTACATAAAT-AAAAAATAAAT
*
80608295 AATATTA
1 AAAATTA
80608302 AAAATTTGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 7 0.26
25 5 0.19
26 15 0.56
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.32
Consensus pattern (25 bp):
AAAATTACATAAATAAAAAATAAAT
Found at i:80609316 original size:18 final size:19
Alignment explanation
Indices: 80609272--80609316 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
80609262 AAAATTTATG
80609272 TTTTAAAAAATAAAAAGAT
1 TTTTAAAAAATAAAAAGAT
* * *
80609291 TATGAAAAAATAAAAA-CT
1 TTTTAAAAAATAAAAAGAT
80609309 TTTTAAAA
1 TTTTAAAA
80609317 TTCAAAAAGT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
TTTTAAAAAATAAAAAGAT
Found at i:80609722 original size:14 final size:14
Alignment explanation
Indices: 80609688--80609730 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
80609678 AAAATATATT
80609688 TTAAAATATAAAAAAA
1 TTAAAA-AT-AAAAAA
80609704 TTAAAAATTAAAAAA
1 TTAAAAA-TAAAAAA
80609719 -TAAAAATAAAAA
1 TTAAAAATAAAAA
80609731 GAATTTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 6 0.23
14 6 0.23
15 7 0.27
16 7 0.27
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
TTAAAAATAAAAAA
Found at i:80609834 original size:63 final size:63
Alignment explanation
Indices: 80609735--80609860 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
80609725 TAAAAAGAAT
80609735 TTATAATTATTTTAAAATATAAAAATTCTACAATTCAATATTATCTAAATCGAACCAAGCCAG
1 TTATAATTATTTTAAAATATAAAAATTCTACAATTCAATATTATCTAAATCGAACCAAGCCAG
* *
80609798 TTATAATTATTTTAAAGTATAAAAATTCTACAATTCAATATTATCTTAATCGAACCAAGCCAG
1 TTATAATTATTTTAAAATATAAAAATTCTACAATTCAATATTATCTAAATCGAACCAAGCCAG
80609861 CTAGACTATA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (63 bp):
TTATAATTATTTTAAAATATAAAAATTCTACAATTCAATATTATCTAAATCGAACCAAGCCAG
Found at i:80610739 original size:17 final size:18
Alignment explanation
Indices: 80610713--80610746 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
80610703 AAGCTCTGCT
80610713 TCTTTGTTTTCTCTTTTC
1 TCTTTGTTTTCTCTTTTC
*
80610731 TCTTT-TTTTTTCTTTT
1 TCTTTGTTTTCTCTTTT
80610747 TATTATTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (18 bp):
TCTTTGTTTTCTCTTTTC
Found at i:80610740 original size:18 final size:17
Alignment explanation
Indices: 80610713--80610746 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
80610703 AAGCTCTGCT
80610713 TCTTTGTTTTCTCTTTTC
1 TCTTTGTTTT-TCTTTTC
*
80610731 TCTTTTTTTTTCTTTT
1 TCTTTGTTTTTCTTTT
80610747 TATTATTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.00, C:0.18, G:0.03, T:0.79
Consensus pattern (17 bp):
TCTTTGTTTTTCTTTTC
Found at i:80614782 original size:18 final size:18
Alignment explanation
Indices: 80614759--80614793 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80614749 AGTGAGAACC
*
80614759 TCACAACCACAGCCACAG
1 TCACAACCACAACCACAG
80614777 TCACAACCACAACCACA
1 TCACAACCACAACCACA
80614794 ACCTCATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.46, G:0.06, T:0.06
Consensus pattern (18 bp):
TCACAACCACAACCACAG
Found at i:80619201 original size:21 final size:20
Alignment explanation
Indices: 80619175--80619213 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
80619165 GTGTGTTTTT
80619175 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
80619196 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
80619214 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:80619223 original size:21 final size:21
Alignment explanation
Indices: 80619175--80619221 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
80619165 GTGTGTTTTT
*
80619175 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
80619196 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
80619217 A-GTTT
1 ATGTTT
80619222 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:80633803 original size:16 final size:18
Alignment explanation
Indices: 80633769--80633805 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
80633759 TCCTTATTTT
80633769 AATAAAATACAATGGTAA
1 AATAAAATACAATGGTAA
80633787 AATAAAATA-AA-GGTAA
1 AATAAAATACAATGGTAA
80633803 AAT
1 AAT
80633806 CCATATAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 9 0.47
ACGTcount: A:0.65, C:0.03, G:0.11, T:0.22
Consensus pattern (18 bp):
AATAAAATACAATGGTAA
Found at i:80643691 original size:37 final size:36
Alignment explanation
Indices: 80643594--80643704 Score: 122
Period size: 37 Copynumber: 3.0 Consensus size: 36
80643584 CTACAAGATA
*
80643594 AATATTAAATTAA-ATTAAA-TATTAAGTTAATTACTTT
1 AATATTAAATTAATATTAAACTATTAAGATAA-TA--TT
*
80643631 AATATTAAATTAATA-GAATACTATTAAGATGAATATT
1 AATATTAAATTAATATTAA-ACTATTAAGAT-AATATT
80643668 AA-ATTAAATTTAATATTAAACTATTAAGATAATATT
1 AATATTAAA-TTAATATTAAACTATTAAGATAATATT
80643704 A
1 A
80643705 TTTTTAAAAT
Statistics
Matches: 65, Mismatches: 3, Indels: 13
0.80 0.04 0.16
Matches are distributed among these distances:
36 13 0.20
37 36 0.55
38 4 0.06
39 10 0.15
40 2 0.03
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (36 bp):
AATATTAAATTAATATTAAACTATTAAGATAATATT
Found at i:80647365 original size:48 final size:48
Alignment explanation
Indices: 80647066--80647373 Score: 207
Period size: 48 Copynumber: 6.4 Consensus size: 48
80647056 ACATTTGGGT
* * * * * * *
80647066 GATATGTGTGCTAGTGTAAGACCATGTTTGGGACATAGCGTCAGCCA-C
1 GATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC-GGCATC
* * *
80647114 GATATGAGAGCCAGTGTAAGACCATGT-TTGGAACATAGCATCGGCAAT-
1 GATATGAGAGCTAGTGTAAGACCATGTCTAGG-ACATGGCATCGGC-ATC
* * * * * * * *
80647162 GTTGTGAGAGCCAGTGTAAGACTATGCCT-GAGACGTGGCATCGACATT
1 GATATGAGAGCTAGTGTAAGACCATGTCTAG-GACATGGCATCGGCATC
* * * * *
80647210 GATATGTGCA-TTAGTGTAAGACCATGTCTGGGACATGCCATCGTCCA-C
1 GATATGAG-AGCTAGTGTAAGACCATGTCTAGGACATGGCATCG-GCATC
* * * * *
80647258 -ATTATGAGAGCTAATGTAAGACCATTTCTAAGACATGGCATCTGCATT
1 GA-TATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATC
* * *
80647306 GAGACGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTC
1 GATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATC
* *
80647354 GAAATGTGAGCTAGTGTAAG
1 GATATGAGAGCTAGTGTAAG
80647374 TGTAATGCCC
Statistics
Matches: 202, Mismatches: 45, Indels: 26
0.74 0.16 0.10
Matches are distributed among these distances:
47 11 0.05
48 184 0.91
49 7 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
GATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCATC
Found at i:80649673 original size:27 final size:27
Alignment explanation
Indices: 80649638--80649776 Score: 170
Period size: 27 Copynumber: 5.1 Consensus size: 27
80649628 TAATGGATGG
* *
80649638 AAATGACCGTAATACCCCTGTAGGGTA
1 AAATAACCGTAATGCCCCTGTAGGGTA
* *
80649665 AAATAACCGTAATGCCCCCGTAAGGTA
1 AAATAACCGTAATGCCCCTGTAGGGTA
* * *
80649692 AAATGACCATAATGCCTCTGTAGGGTA
1 AAATAACCGTAATGCCCCTGTAGGGTA
* *
80649719 AAATAACCGTAATGCCGCTGTAGGCTA
1 AAATAACCGTAATGCCCCTGTAGGGTA
* **
80649746 AAATTACCGTAATGCCTTTGTAGGGTA
1 AAATAACCGTAATGCCCCTGTAGGGTA
80649773 AAAT
1 AAAT
80649777 GACAAGTATG
Statistics
Matches: 95, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 95 1.00
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (27 bp):
AAATAACCGTAATGCCCCTGTAGGGTA
Found at i:80649788 original size:54 final size:54
Alignment explanation
Indices: 80649638--80649776 Score: 199
Period size: 54 Copynumber: 2.6 Consensus size: 54
80649628 TAATGGATGG
* *
80649638 AAATGACCGTAATACCCCTGTAGGGTAAAATAACCGTAATGCCCCCGTAAGGTA
1 AAATGACCGTAATGCCTCTGTAGGGTAAAATAACCGTAATGCCCCCGTAAGGTA
* * *
80649692 AAATGACCATAATGCCTCTGTAGGGTAAAATAACCGTAATGCCGCTGT-AGGCTA
1 AAATGACCGTAATGCCTCTGTAGGGTAAAATAACCGTAATGCCCCCGTAAGG-TA
* *
80649746 AAATTACCGTAATGCCTTTGTAGGGTAAAAT
1 AAATGACCGTAATGCCTCTGTAGGGTAAAAT
80649777 GACAAGTATG
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
53 3 0.04
54 73 0.96
ACGTcount: A:0.35, C:0.20, G:0.21, T:0.24
Consensus pattern (54 bp):
AAATGACCGTAATGCCTCTGTAGGGTAAAATAACCGTAATGCCCCCGTAAGGTA
Found at i:80649951 original size:27 final size:27
Alignment explanation
Indices: 80649921--80650000 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
80649911 GAAAGTACTG
*
80649921 TACTGGTGACTATGTCACATTCATTGA
1 TACTGGTGACTATGCCACATTCATTGA
*
80649948 TACTGGT-AGCTATGCCACAATT-ACTGA
1 TACTGGTGA-CTATGCCAC-ATTCATTGA
* * *
80649975 TACTAGTGGCTTTGCCACATTCATTG
1 TACTGGTGACTATGCCACATTCATTG
80650001 TTTTTGGCAG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
26 4 0.09
27 36 0.84
28 3 0.07
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
TACTGGTGACTATGCCACATTCATTGA
Done.