Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 258 of 325
Found at i:80652210 original size:12 final size:13
Alignment explanation
Indices: 80652193--80652224 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80652183 ATAGCATATT
80652193 TCAAAAC-ATGCA
1 TCAAAACTATGCA
80652205 TCAAAACTATGCA
1 TCAAAACTATGCA
80652218 -CAAAACT
1 TCAAAACT
80652225 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:80654333 original size:58 final size:58
Alignment explanation
Indices: 80654242--80654357 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
80654232 GATCTGTATC
* *
80654242 GTCGAAGCATCGATACGTGAAATACATTCTGAATCTTTTCTAACTCAGACGGTAATCT
1 GTCGAAGCATCGATACGTGAAATACATTCTGAATCTTTTCTAACACAGACAGTAATCT
*
80654300 GTCGAAGCATCGATACGTGAAATACATTGTGAATCTTTTCTAACACAGACAGTAATCT
1 GTCGAAGCATCGATACGTGAAATACATTCTGAATCTTTTCTAACACAGACAGTAATCT
80654358 TAATCTATAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (58 bp):
GTCGAAGCATCGATACGTGAAATACATTCTGAATCTTTTCTAACACAGACAGTAATCT
Found at i:80659425 original size:12 final size:13
Alignment explanation
Indices: 80659408--80659439 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
80659398 ATAGCACATT
80659408 TCAAAAC-ATGCA
1 TCAAAACTATGCA
80659420 TCAAAACTATGCA
1 TCAAAACTATGCA
80659433 -CAAAACT
1 TCAAAACT
80659440 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:80665365 original size:40 final size:39
Alignment explanation
Indices: 80665320--80665449 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
80665310 CGGAATACAA
80665320 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
80665360 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
80665400 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
80665440 CCGGATATAA
1 CCGGATATAA
80665450 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:80669392 original size:29 final size:29
Alignment explanation
Indices: 80669360--80669437 Score: 102
Period size: 29 Copynumber: 2.7 Consensus size: 29
80669350 ATACCCTCCG
** *
80669360 AGCTCGCACACCCAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
* *
80669389 AGCTTGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCGTATATTTCC
*
80669418 AGCACGCACACTTAGTGCCG
1 AGCTCGCACACTTAGTGCCG
80669438 ATCTCGTCAC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.18, T:0.27
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCGTATATTTCC
Found at i:80686638 original size:40 final size:39
Alignment explanation
Indices: 80686593--80686722 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
80686583 CGGAATACAA
80686593 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
80686633 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
80686673 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
80686713 CCGGATATAA
1 CCGGATATAA
80686723 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:80690593 original size:28 final size:27
Alignment explanation
Indices: 80690553--80690627 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 27
80690543 TTAAAATTTG
80690553 TATAGCACTAAGTGTGCGAGTTTGATCA
1 TATAGCACTAAGTGTGCGAG-TTGATCA
* *
80690581 TATAGCACTAAGTGTGTGAGTTGATTA
1 TATAGCACTAAGTGTGCGAGTTGATCA
* *
80690608 TATTGACACTGAGTGTGCGA
1 TATAG-CACTAAGTGTGCGA
80690628 CATTATTGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
27 10 0.24
28 31 0.76
ACGTcount: A:0.28, C:0.12, G:0.27, T:0.33
Consensus pattern (27 bp):
TATAGCACTAAGTGTGCGAGTTGATCA
Found at i:80700139 original size:12 final size:12
Alignment explanation
Indices: 80700122--80700146 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80700112 AATGTGAAAA
80700122 TGGCGAAACTCT
1 TGGCGAAACTCT
80700134 TGGCGAAACTCT
1 TGGCGAAACTCT
80700146 T
1 T
80700147 TGGGTTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (12 bp):
TGGCGAAACTCT
Found at i:80707352 original size:21 final size:21
Alignment explanation
Indices: 80707328--80707372 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
80707318 TTCACACGGG
80707328 CGTGTTGCCCATCCACACAGA
1 CGTGTTGCCCATCCACACAGA
*
80707349 CGTGTTGCCCATCCACACGGA
1 CGTGTTGCCCATCCACACAGA
80707370 CGT
1 CGT
80707373 ATGCCCCTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.38, G:0.22, T:0.20
Consensus pattern (21 bp):
CGTGTTGCCCATCCACACAGA
Found at i:80707669 original size:35 final size:35
Alignment explanation
Indices: 80707628--80707764 Score: 175
Period size: 35 Copynumber: 3.9 Consensus size: 35
80707618 TAACAATACG
* *
80707628 TAGGTATGGTATTTTCCATACTGAGTTATGATACA
1 TAGGTATGGTATTATCCATACTGAGTTATGAAACA
* * * *
80707663 TTGGTATGGTATTATCCATACTGAGCTATAAAACG
1 TAGGTATGGTATTATCCATACTGAGTTATGAAACA
* *
80707698 TAGGTATGGTATTTTCCATACTGAGTTGTGAAACA
1 TAGGTATGGTATTATCCATACTGAGTTATGAAACA
* * *
80707733 TAGGTATGGTATTAACCATATTGAGTTGTGAA
1 TAGGTATGGTATTATCCATACTGAGTTATGAA
80707765 CCGTGGCACT
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 87 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (35 bp):
TAGGTATGGTATTATCCATACTGAGTTATGAAACA
Found at i:80707704 original size:70 final size:70
Alignment explanation
Indices: 80707609--80707758 Score: 223
Period size: 70 Copynumber: 2.1 Consensus size: 70
80707599 GGGTGCTACA
* *
80707609 CATACTGAGTAACAATACGTAGGTATGGTATTTTCCATACTGAGTTATGATACATTGGTATGGTA
1 CATACTGAGTAACAATACGTAGGTATGGTATTTTCCATACTGAGTTATGAAACATAGGTATGGTA
*
80707674 TTATC
66 TTAAC
*
80707679 CATACTGAGCTATA-AA-ACGTAGGTATGGTATTTTCCATACTGAGTTGTGAAACATAGGTATGG
1 CATACTGAG-TA-ACAATACGTAGGTATGGTATTTTCCATACTGAGTTATGAAACATAGGTATGG
80707742 TATTAAC
64 TATTAAC
*
80707749 CATATTGAGT
1 CATACTGAGT
80707759 TGTGAACCGT
Statistics
Matches: 73, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
69 1 0.01
70 67 0.92
71 4 0.05
72 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (70 bp):
CATACTGAGTAACAATACGTAGGTATGGTATTTTCCATACTGAGTTATGAAACATAGGTATGGTA
TTAAC
Found at i:80708510 original size:24 final size:24
Alignment explanation
Indices: 80708466--80708513 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
80708456 CGGTTTGCGC
*
80708466 CACGGGCATGTGTTGTAGCCGTGT
1 CACGGGCATGTGTTCTAGCCGTGT
*
80708490 CACGGGCGTGTG-TCTAGGCCGTGT
1 CACGGGCATGTGTTCTA-GCCGTGT
80708514 GTCACACACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.10, C:0.23, G:0.40, T:0.27
Consensus pattern (24 bp):
CACGGGCATGTGTTCTAGCCGTGT
Found at i:80708530 original size:66 final size:66
Alignment explanation
Indices: 80708424--80708555 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
80708414 CAGGTAGACA
* *
80708424 CACGGGCGCGTGTCTAGGCCGTGTGCCATATACGGTTTGCGCCACGGGCATGTGTTGTAGCCGTG
1 CACGGGCGCGTGTCTAGGCCGTGTGCCACACACGGTTTGCGCCACGGGCATGTGTTGTAGCCGTG
80708489 T
66 T
* *
80708490 CACGGGCGTGTGTCTAGGCCGTGTGTCACACACGGTTTGCGCCACGGGCATGTGTTGTAGCCGTG
1 CACGGGCGCGTGTCTAGGCCGTGTGCCACACACGGTTTGCGCCACGGGCATGTGTTGTAGCCGTG
80708555 T
66 T
80708556 GTCCCCTGTA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.12, C:0.26, G:0.36, T:0.26
Consensus pattern (66 bp):
CACGGGCGCGTGTCTAGGCCGTGTGCCACACACGGTTTGCGCCACGGGCATGTGTTGTAGCCGTG
T
Found at i:80715274 original size:70 final size:70
Alignment explanation
Indices: 80715179--80715355 Score: 282
Period size: 70 Copynumber: 2.5 Consensus size: 70
80715169 TCCATGGAAA
* *
80715179 AGTTATGATACGTAGGTATGGTATTATCCATACTGAGCTATAATACGTAGGTATGGTATTTTCCA
1 AGTTATGATACGTAGGTATGGTATTATCCATACTGAGCTATAAAACATAGGTATGGTATTTTCCA
*
80715244 TATTG
66 TACTG
*
80715249 AGTTATGATACGTAGGTATGGTATTATCCATACTGAGCTATAAAACATAGGTATGGTTTTTTCCA
1 AGTTATGATACGTAGGTATGGTATTATCCATACTGAGCTATAAAACATAGGTATGGTATTTTCCA
80715314 TACTG
66 TACTG
* * * *
80715319 AGTTGTGAAACGTAGGTATGGTATTAACCATAATGAG
1 AGTTATGATACGTAGGTATGGTATTATCCATACTGAG
80715356 TTGTGAATCG
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
70 99 1.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (70 bp):
AGTTATGATACGTAGGTATGGTATTATCCATACTGAGCTATAAAACATAGGTATGGTATTTTCCA
TACTG
Found at i:80715356 original size:35 final size:35
Alignment explanation
Indices: 80715179--80715362 Score: 226
Period size: 35 Copynumber: 5.3 Consensus size: 35
80715169 TCCATGGAAA
*
80715179 AGTTATGATACGTAGGTATGGTATTATCCATACTG
1 AGTTATGAAACGTAGGTATGGTATTATCCATACTG
* * *
80715214 AGCTAT-AATACGTAGGTATGGTATTTTCCATATTG
1 AGTTATGAA-ACGTAGGTATGGTATTATCCATACTG
*
80715249 AGTTATGATACGTAGGTATGGTATTATCCATACTG
1 AGTTATGAAACGTAGGTATGGTATTATCCATACTG
* * * * *
80715284 AGCTATAAAACATAGGTATGGTTTTTTCCATACTG
1 AGTTATGAAACGTAGGTATGGTATTATCCATACTG
* * *
80715319 AGTTGTGAAACGTAGGTATGGTATTAACCATAATG
1 AGTTATGAAACGTAGGTATGGTATTATCCATACTG
*
80715354 AGTTGTGAA
1 AGTTATGAA
80715363 TCGTGGCACT
Statistics
Matches: 125, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
34 1 0.01
35 123 0.98
36 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.36
Consensus pattern (35 bp):
AGTTATGAAACGTAGGTATGGTATTATCCATACTG
Found at i:80720212 original size:25 final size:24
Alignment explanation
Indices: 80720183--80720242 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 24
80720173 CCATATAATA
*
80720183 GGAAGCTCATGTGAGA-TATATAAC
1 GGAAGCTCATCTG-GACTATATAAC
*
80720207 GTGAAGCTTATCTGGACTATATAAC
1 G-GAAGCTCATCTGGACTATATAAC
80720232 GGAAAGCTCAT
1 GG-AAGCTCAT
80720243 AAAAGCTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 4 0.13
25 26 0.87
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (24 bp):
GGAAGCTCATCTGGACTATATAAC
Found at i:80720369 original size:23 final size:24
Alignment explanation
Indices: 80720302--80720369 Score: 57
Period size: 23 Copynumber: 2.8 Consensus size: 24
80720292 AAAGCTATTA
* * *
80720302 ATCAAGAAGCTCCGGATAGCAATAT
1 ATCAGGAAGCTCCGGAGAGC-AGAT
* ** *
80720327 ATCAGGAAGTTCAAGTGAGC-GAT
1 ATCAGGAAGCTCCGGAGAGCAGAT
80720350 ATCAGGAAGCTCCGGAGAGC
1 ATCAGGAAGCTCCGGAGAGC
80720370 CATTAATCAG
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
23 18 0.56
25 14 0.44
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.18
Consensus pattern (24 bp):
ATCAGGAAGCTCCGGAGAGCAGAT
Found at i:80721872 original size:16 final size:16
Alignment explanation
Indices: 80721851--80721888 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
80721841 TTTGGTTCAT
80721851 TGTAATGGAATAGCA-C
1 TGTAATGGAATAG-AGC
80721867 TGTAATGGAATAGAGC
1 TGTAATGGAATAGAGC
80721883 TGTAAT
1 TGTAAT
80721889 CAGTAATTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 1 0.05
16 20 0.95
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:80721956 original size:44 final size:46
Alignment explanation
Indices: 80721870--80721962 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
80721860 ATAGCACTGT
*
80721870 AATGGAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
*
80721916 AATGGAATAGAACTGTAAT-AG-AATTC-TTATGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATCAGTAATTCAAT-TGTTTGGTTGAATGG
80721960 AAT
1 AAT
80721963 AGATGTTGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
43 1 0.02
44 23 0.52
45 2 0.05
46 18 0.41
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATGG
Found at i:80722130 original size:59 final size:57
Alignment explanation
Indices: 80722057--80722168 Score: 145
Period size: 59 Copynumber: 1.9 Consensus size: 57
80722047 TTGTTATTAA
* * *
80722057 ATTTTAATAAAATTATTTTTAAATATATTTTATTAAAAAATAATAA-ATAATTTAACCAT
1 ATTTTAACAAAATTATTATTAAATATAATTTA--AAAAAATAA-AATATAATTTAACCAT
* *
80722116 ATTTTAACATAATTATTATTAAATATAATTTAATAAAATAAAATATAATTTAA
1 ATTTTAACAAAATTATTATTAAATATAATTTAAAAAAATAAAATATAATTTAA
80722169 TAACATTCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
56 2 0.04
57 17 0.36
59 28 0.60
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (57 bp):
ATTTTAACAAAATTATTATTAAATATAATTTAAAAAAATAAAATATAATTTAACCAT
Found at i:80729408 original size:30 final size:31
Alignment explanation
Indices: 80729363--80729431 Score: 122
Period size: 30 Copynumber: 2.2 Consensus size: 31
80729353 AATCATTTGG
80729363 AAATGAATGTAGGTTTCCAAAAATGAAAATGA
1 AAATGAA-GTAGGTTTCCAAAAATGAAAATGA
80729395 AAATGAA-TAGGTTTCCAAAAATGAAAATGA
1 AAATGAAGTAGGTTTCCAAAAATGAAAATGA
80729425 AAATGAA
1 AAATGAA
80729432 AATTAAAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 30 0.81
32 7 0.19
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (31 bp):
AAATGAAGTAGGTTTCCAAAAATGAAAATGA
Found at i:80739298 original size:39 final size:39
Alignment explanation
Indices: 80739250--80739326 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
80739240 ACGTATAATT
80739250 CTTAAACAATATCATAACATATAAAAATAGGTATGTACC
1 CTTAAACAATATCATAACATATAAAAATAGGTATGTACC
*
80739289 CTTAAACAATATTATAACATATAAAAATAGGTATGTAC
1 CTTAAACAATATCATAACATATAAAAATAGGTATGTAC
80739327 ACATTAATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (39 bp):
CTTAAACAATATCATAACATATAAAAATAGGTATGTACC
Found at i:80753886 original size:12 final size:13
Alignment explanation
Indices: 80753857--80753889 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
80753847 CAATATTCAA
80753857 TAAAATATCATCTT
1 TAAAATATCA-CTT
80753871 TAAAATATCA-TT
1 TAAAATATCACTT
80753883 TAAAATA
1 TAAAATA
80753890 ATACCCCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
14 10 0.53
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAAATATCACTT
Found at i:80754044 original size:5 final size:5
Alignment explanation
Indices: 80754034--80754062 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
80754024 ACCTTATGTG
80754034 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
80754063 AACACACAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:80758475 original size:5 final size:5
Alignment explanation
Indices: 80758465--80758502 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
80758455 CCAATTTGTA
80758465 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80758503 GAACACACAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:80760953 original size:31 final size:29
Alignment explanation
Indices: 80760899--80760969 Score: 90
Period size: 31 Copynumber: 2.4 Consensus size: 29
80760889 TGATTTTTGC
*
80760899 TTCTTATTTTATTATTATATTCATATTCA
1 TTCTTATTTTATTATGATATTCATATTCA
*
80760928 TTCTTATTTTGTTGATAGATATTCATATTCA
1 TTCTTATTTTATT-AT-GATATTCATATTCA
80760959 TT-TTACTTTTA
1 TTCTTA-TTTTA
80760970 AGTTTTTTTC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 12 0.33
30 5 0.14
31 19 0.53
ACGTcount: A:0.25, C:0.10, G:0.04, T:0.61
Consensus pattern (29 bp):
TTCTTATTTTATTATGATATTCATATTCA
Found at i:80764764 original size:46 final size:46
Alignment explanation
Indices: 80764653--80765019 Score: 513
Period size: 46 Copynumber: 7.9 Consensus size: 46
80764643 TTTAACATGG
* * * *
80764653 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCA-TTTCATATCACGT
* *
80764703 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
*
80764749 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
* *
80764795 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
80764841 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
* *
80764887 TGCCATGGTATCTTTCAACCATGGTCTTACAT-ATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTA-TTCATTTCATATCACGT
* ** *
80764933 TGCCATGATATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
**
80764979 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
80765020 TAGAGAGCAC
Statistics
Matches: 294, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
45 4 0.01
46 264 0.90
47 2 0.01
49 1 0.00
50 23 0.08
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
Found at i:80767122 original size:16 final size:16
Alignment explanation
Indices: 80767101--80767139 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
80767091 ATTTTTCCCC
*
80767101 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
80767117 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
80767133 TCTTTCC
1 TTTTTCC
80767140 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:80767211 original size:2 final size:2
Alignment explanation
Indices: 80767206--80767238 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
80767196 TCCTTTTCTT
80767206 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
80767239 ATAACTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:80768834 original size:30 final size:30
Alignment explanation
Indices: 80768800--80768860 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
80768790 TTTTCTATGA
*
80768800 TAGAGTTTGTTGGTTTAAGAATTAGGAAGT
1 TAGAGTTTGTTGGTTTAAGAATTAGAAAGT
80768830 TAGAGTTTGTTGGTTTAAGAATTAGAAAGT
1 TAGAGTTTGTTGGTTTAAGAATTAGAAAGT
80768860 T
1 T
80768861 TGCCTTTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (30 bp):
TAGAGTTTGTTGGTTTAAGAATTAGAAAGT
Found at i:80768869 original size:30 final size:30
Alignment explanation
Indices: 80768800--80768871 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
80768790 TTTTCTATGA
* *
80768800 TAGAGTTTGTTGGTTTAAGAATTAGGAAGT
1 TAGACTTTGTTGGTTTAAGAATTAGAAAGT
*
80768830 TAGAGTTTGTTGGTTTAAGAATTAGAAAGT
1 TAGACTTTGTTGGTTTAAGAATTAGAAAGT
* *
80768860 TTGCCTTTGTTG
1 TAGACTTTGTTG
80768872 ATTGCGCTCG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.26, C:0.03, G:0.28, T:0.43
Consensus pattern (30 bp):
TAGACTTTGTTGGTTTAAGAATTAGAAAGT
Found at i:80775102 original size:47 final size:45
Alignment explanation
Indices: 80774950--80775310 Score: 261
Period size: 47 Copynumber: 7.7 Consensus size: 45
80774940 GATATATTTT
* *
80774950 CGATGCCATGTCCCAGACATGGTCTTACACTGGC-TCTCATATACGCGTGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC-TGTA--TG-GC
* * * *
80775000 TGATGCATGTCCCAAACATGTCTTACACTAGCACAACTCT-TA--GC
1 CGATGCATGTCCCAGACATGTCTTACACT-G-GCATCTCTGTATGGC
* *
80775044 CGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCATGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-ATCTCTGT-ATGGC
* * *
80775091 CGATGCATGTCCCAGACATGTCTTACATTGGCA-CTCATCTCTGTGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCATCTC-TGTATG-GC
* * *
80775137 CGATGCCATGTCCCATACATGGTCTTACACTAGCTATCAT-AGTATGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATC-TCTGTATGGC
* * * * *
80775185 TGATGCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTGGAT-GC
1 CGATGCATGTCCCAGACATGTCTTACACT-GGCATC-TCTGTATGGC
* * *
80775231 CGATGCCATGTCCTAGACATGGTCTTACACTGGC-TCTCATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCATCTC-T-GTATGGC
*
80775279 CGAAGCATGTCCCAGACATGTCTTACACTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC
80775311 GCACAAATCA
Statistics
Matches: 251, Mismatches: 38, Indels: 48
0.74 0.11 0.14
Matches are distributed among these distances:
42 1 0.00
43 6 0.02
44 28 0.11
45 8 0.03
46 45 0.18
47 89 0.35
48 43 0.17
49 20 0.08
50 7 0.03
51 4 0.02
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCATCTCTGTATGGC
Found at i:80775195 original size:94 final size:94
Alignment explanation
Indices: 80774950--80775307 Score: 399
Period size: 94 Copynumber: 3.8 Consensus size: 94
80774940 GATATATTTT
* * *
80774950 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTCCCA
*
80775014 AACATGTCTTACACTAGCA--CAACTCT-TAGC
63 AACATGTCTTACACTAGCACTCATCTCTGT-GC
* * * *
80775044 CGATG-CGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCATGGCCGATGCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT-ATGGCCGATGCATGTCCCAA
* *
80775106 ACATGTCTTACATTGGCACTCATCTCTGTGC
64 ACATGTCTTACACTAGCACTCATCTCTGTGC
* * *
80775137 CGATGCCATGTCCCATACATGGTCTTACACTAGCTATCATAGTATGGCTGATGCATGTCCCAAAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAAAC
* * *
80775202 ATGTCTTACACTAGCCCTCGTCT-GGATGC
66 ATGTCTTACACTAGCACTCATCTCTG-TGC
* * * * * *
80775231 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAAAC
80775296 ATGTCTTACACT
66 ATGTCTTACACT
80775308 GGCGCACAAA
Statistics
Matches: 223, Mismatches: 31, Indels: 20
0.81 0.11 0.07
Matches are distributed among these distances:
91 32 0.14
92 17 0.08
93 27 0.12
94 128 0.57
95 18 0.08
96 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (94 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCACTCATCTCTGTGC
Found at i:80775211 original size:141 final size:137
Alignment explanation
Indices: 80774950--80775307 Score: 391
Period size: 141 Copynumber: 2.6 Consensus size: 137
80774940 GATATATTTT
* *
80774950 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATACGCGTGCTGATGCATGTCCCAA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-T-C-TGTGCCGATGCATGTCCCAA
* * * * *
80775015 ACATGTCTTACACTAGCACAACTCTTAGCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATC
63 ACATGTCTTACACTAGCACAACTCATAGCCGATGCATGTCCCAAACACGTCTTACACTAGCCATC
80775080 -TCTGTCATGGC
128 GTCTG-CAT-GC
* * *
80775091 CGATG-CATGTCCCAGACAT-GTCTTACATTGGCACTCATCTCTGTGCCGATGCCATGTCCCATA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-TCTGTGCCGATG-CATGTCCCAAA
* * * *
80775154 CATGGTCTTACACTAGCTATCATAGT-ATGGCTGATGCATGTCCCAAACATGTCTTACACTAGCC
64 CAT-GTCTTACACTAGC-A-CA-ACTCATAGCCGATGCATGTCCCAAACACGTCTTACACTAGCC
* *
80775218 CTCGTCTGGATGC
125 ATCGTCTGCATGC
* ** * *
80775231 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGT-GCCGATGCATGTCCCAAAC
80775296 ATGTCTTACACT
65 ATGTCTTACACT
80775308 GGCGCACAAA
Statistics
Matches: 184, Mismatches: 24, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
137 8 0.04
138 14 0.08
139 31 0.17
140 32 0.17
141 70 0.38
142 29 0.16
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (137 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATTCTGTGCCGATGCATGTCCCAAACA
TGTCTTACACTAGCACAACTCATAGCCGATGCATGTCCCAAACACGTCTTACACTAGCCATCGTC
TGCATGC
Found at i:80786187 original size:47 final size:46
Alignment explanation
Indices: 80786117--80786293 Score: 187
Period size: 47 Copynumber: 3.8 Consensus size: 46
80786107 CTCATCTCTG
*
80786117 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAGTA
* * * * * * *
80786164 TAGCTGATG-CATGTCCCAGACATGTCTTACATTAGCCCTCGTCTGGA
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCAT-AGTA
* * *
80786211 TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATG
1 TGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATAGTA
*
80786258 TGGCCGAAG-CATGTCCCAGACATGTCTTACACTGGC
1 T-GCCGATGCCATGTCCCAGACATGTCTTACACTGGC
80786294 GCACAAATCA
Statistics
Matches: 105, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
46 33 0.31
47 45 0.43
48 27 0.26
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
TGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATAGTA
Found at i:80786270 original size:94 final size:94
Alignment explanation
Indices: 80786117--80786288 Score: 281
Period size: 94 Copynumber: 1.8 Consensus size: 94
80786107 CTCATCTCTG
* * * *
80786117 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATAGCTGATGCATGTCCCA
1 TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTATCATAATATAGCCGAAGCATGTCCCA
80786182 GACATGTCTTACATTAGCCCTCGTCTGGA
66 GACATGTCTTACATTAGCCCTCGTCTGGA
* * *
80786211 TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCA
1 TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTATCATAATATAGCCGAAGCATGTCCCA
80786276 GACATGTCTTACA
66 GACATGTCTTACA
80786289 CTGGCGCACA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
94 71 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.27
Consensus pattern (94 bp):
TGCCGATGCCATATCCCAGACATGGTCTTACACTGGCTATCATAATATAGCCGAAGCATGTCCCA
GACATGTCTTACATTAGCCCTCGTCTGGA
Found at i:80786291 original size:46 final size:47
Alignment explanation
Indices: 80786096--80786293 Score: 181
Period size: 48 Copynumber: 4.2 Consensus size: 47
80786086 GATAGGGGTG
* * *
80786096 TTACACTGGCACTCAT-CTCTGTGCCGATGCCATGTCCCAGACATGGTC
1 TTACACTGGCTCTCATAATGTG-GCCGATG-CATGTCCCAGACATGGTC
* * * * *
80786144 TTACACTGGCTATCATAGTATAGCTGATGCATGTCCCAGACAT-GTC
1 TTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGGTC
* * * * * *
80786190 TTACATTAGCCCTCGT-CTG-GATGCCGATGCCATATCCCAGACATGGTC
1 TTACACTGGCTCTCATAATGTG--GCCGATG-CATGTCCCAGACATGGTC
*
80786238 TTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGACAT-GTC
1 TTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGGTC
80786284 TTACACTGGC
1 TTACACTGGC
80786294 GCACAAATCA
Statistics
Matches: 120, Mismatches: 23, Indels: 16
0.75 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 33 0.28
47 40 0.33
48 41 0.34
49 4 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (47 bp):
TTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGGTC
Found at i:80787765 original size:2 final size:2
Alignment explanation
Indices: 80787758--80787796 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
80787748 TTAATAAATA
80787758 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80787797 TTGTATACAC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:80788239 original size:15 final size:15
Alignment explanation
Indices: 80788215--80788250 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
80788205 CAGACAATTT
*
80788215 AGTTTTCATTAATAA
1 AGTTTCCATTAATAA
80788230 AGTTTCCATTAATAA
1 AGTTTCCATTAATAA
80788245 AGTTTC
1 AGTTTC
80788251 AATTCTGGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.44
Consensus pattern (15 bp):
AGTTTCCATTAATAA
Found at i:80789406 original size:12 final size:12
Alignment explanation
Indices: 80789389--80789420 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
80789379 AATAGAGTGA
80789389 TTCAAAGTATGT
1 TTCAAAGTATGT
*
80789401 TTCAAAGCATGT
1 TTCAAAGTATGT
80789413 TTCAAAGT
1 TTCAAAGT
80789421 TAAGAGATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (12 bp):
TTCAAAGTATGT
Found at i:80792037 original size:36 final size:36
Alignment explanation
Indices: 80791990--80792058 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
80791980 AAATAGTACA
80791990 TTTTTCATAATTGACACACTGCCCAAAACATCTAGC
1 TTTTTCATAATTGACACACTGCCCAAAACATCTAGC
80792026 TTTTTCATAATTGACACACTGCCCAAAACATCT
1 TTTTTCATAATTGACACACTGCCCAAAACATCT
80792059 TCTATATTCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.32
Consensus pattern (36 bp):
TTTTTCATAATTGACACACTGCCCAAAACATCTAGC
Found at i:80809833 original size:22 final size:19
Alignment explanation
Indices: 80809790--80809843 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
80809780 CGTATAACTA
*
80809790 AATTGTGTATATTTGAATTG
1 AATT-TGTATATGTGAATTG
80809810 AATGTTGTATATGTGAATTATG
1 AAT-TTGTATATGTGAA-T-TG
80809832 AATTTGT-TATGT
1 AATTTGTATATGT
80809844 ATATGAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
20 19 0.63
21 6 0.20
22 5 0.17
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (19 bp):
AATTTGTATATGTGAATTG
Found at i:80812281 original size:10 final size:10
Alignment explanation
Indices: 80812263--80812293 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
80812253 ACTCGTACAA
80812263 TAATGCTCAC
1 TAATGCTCAC
*
80812273 TAATACTCAC
1 TAATGCTCAC
80812283 TAATGCTCAC
1 TAATGCTCAC
80812293 T
1 T
80812294 CATATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.32
Consensus pattern (10 bp):
TAATGCTCAC
Found at i:80814947 original size:49 final size:49
Alignment explanation
Indices: 80814847--80815106 Score: 191
Period size: 49 Copynumber: 5.4 Consensus size: 49
80814837 ACGATCCCGA
* * ** ** *
80814847 GCCATGTTCCAAACATGGTCTTACACTAGCTCCCATAT-CTAAGTC-GAT
1 GCCATGTCCCAGACA-GGTCTTACACTAGCTTTCATATACCGAGGCTGAT
* * *
80814895 GCCATGTCCCAGACAGGTCTTACACTAACTTTCAAATATCGAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATACCGAGGCTGAT
* * * *
80814944 GCCATGTCCTAGACAGGTCTTACACTGGCTCTCATCTACCG-GTG-TCGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATACCGAG-GCT-GAT
* ** * * * *
80814993 GCCATGTCCCAAACAGGTCTTACA-T---TGACACATGCCAAGTC-GAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATACCGAGGCTGAT
* *
80815037 GCCATGTCCTAGACAGGTCTTACACTAGCTTGCATAT-CTCGAGGCTGAT
1 GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATAC-CGAGGCTGAT
*
80815086 G-CATGTCCCAGACATGTCTTA
1 GCCATGTCCCAGACAGGTCTTA
80815107 TAGTGGCTCT
Statistics
Matches: 165, Mismatches: 35, Indels: 24
0.74 0.16 0.11
Matches are distributed among these distances:
44 25 0.15
45 7 0.04
46 1 0.01
47 19 0.12
48 46 0.28
49 67 0.41
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTAGCTTTCATATACCGAGGCTGAT
Found at i:80816855 original size:30 final size:30
Alignment explanation
Indices: 80816821--80816878 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
80816811 TTTTTGAGAA
* * *
80816821 TAAGGGTATAATGGTCATTTTGCCAAAGTC
1 TAAGGGCAAAATGGTCATTTTACCAAAGTC
80816851 TAAGGGCAAAATGGTCATTTTACCAAAG
1 TAAGGGCAAAATGGTCATTTTACCAAAG
80816879 ATGTGTATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.29
Consensus pattern (30 bp):
TAAGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:80817367 original size:49 final size:49
Alignment explanation
Indices: 80817304--80817425 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 49
80817294 GTGCTAGTGG
*
80817304 AAGA-CATGTCTGGGACAT-GCATCAGCACGC-ATAGACGAGAGCTAGTAT
1 AAGACCATGTCTGGGACATGGCATCAGC-CGCGAT-GACGAGAGCCAGTAT
* * * *
80817352 AAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATAGCCAGTAT
1 AAGACCATGTCTGGGACATGGCATCAGCCGCGATGACGAGAGCCAGTAT
*
80817401 AAGACCATGTCCGGGACATGGCATC
1 AAGACCATGTCTGGGACATGGCATC
80817426 TGCAACTTAT
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
48 4 0.06
49 52 0.80
50 9 0.14
ACGTcount: A:0.30, C:0.23, G:0.28, T:0.20
Consensus pattern (49 bp):
AAGACCATGTCTGGGACATGGCATCAGCCGCGATGACGAGAGCCAGTAT
Found at i:80819067 original size:40 final size:40
Alignment explanation
Indices: 80818848--80819070 Score: 292
Period size: 40 Copynumber: 5.6 Consensus size: 40
80818838 GCTACTCGTT
*
80818848 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
80818888 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80818928 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
80818968 CAAATGCCTTC-GGATCTCAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
80819008 CAAATGCCTT-AGGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
80819049 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
80819071 AGACATCGTT
Statistics
Matches: 167, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 151 0.90
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80827001 original size:40 final size:40
Alignment explanation
Indices: 80826964--80827189 Score: 316
Period size: 40 Copynumber: 5.7 Consensus size: 40
80826954 GCTACTCGTT
*
80826964 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
80827004 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80827044 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
80827084 TAAATGCCTTC-GGATCTTAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
80827124 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
80827165 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80827190 CATCATTCGA
Statistics
Matches: 172, Mismatches: 10, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 3 0.02
40 156 0.91
41 13 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:80829710 original size:55 final size:55
Alignment explanation
Indices: 80829641--80829760 Score: 159
Period size: 55 Copynumber: 2.2 Consensus size: 55
80829631 AGTCAATTTA
* * ** * * *
80829641 GTACACGGGCAGGCCACACGGGTGTGTGTCGTGGCCGTGTTTTAAAGTTAATGCT
1 GTACACGGGTAGGCCACACGAGCATGTGTCATGGCCGTGTTTCAAAGTCAATGCT
*
80829696 GTACACGGGTAGGCCACACGAGCATGTGTCATGGCCGTGTTTCAAAGTCAATGTT
1 GTACACGGGTAGGCCACACGAGCATGTGTCATGGCCGTGTTTCAAAGTCAATGCT
*
80829751 GCACACGGGT
1 GTACACGGGT
80829761 TAAGGGCACG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.21, C:0.22, G:0.33, T:0.25
Consensus pattern (55 bp):
GTACACGGGTAGGCCACACGAGCATGTGTCATGGCCGTGTTTCAAAGTCAATGCT
Found at i:80836248 original size:49 final size:49
Alignment explanation
Indices: 80836174--80836303 Score: 140
Period size: 49 Copynumber: 2.7 Consensus size: 49
80836164 TAAGAGTTGT
* *
80836174 GCTAGTGTAAGA-CATGTCTGTGACAT-GCATCAGCACGT-ATAGACGAGA
1 GCTAGTATAAGACCATGTCTGGGACATGGCATCAGC-CGTGAT-GACGAGA
* * * * *
80836222 GCTAGTATAAGACCATGTCTGGGACATGGCAACGGCCTTGATGATGATA
1 GCTAGTATAAGACCATGTCTGGGACATGGCATCAGCCGTGATGACGAGA
* *
80836271 GCCAGTATAAGACCATGTCCGGGACATGGCATC
1 GCTAGTATAAGACCATGTCTGGGACATGGCATC
80836304 TGCAACTTAT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 11 0.16
49 50 0.72
50 8 0.12
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (49 bp):
GCTAGTATAAGACCATGTCTGGGACATGGCATCAGCCGTGATGACGAGA
Found at i:80837175 original size:45 final size:45
Alignment explanation
Indices: 80837086--80837177 Score: 130
Period size: 45 Copynumber: 2.0 Consensus size: 45
80837076 CAGTTTAGTA
** * *
80837086 CACGGGCAGGCCACACGGGCGTGTGTTGTGGTCGTATTTTAAAGT
1 CACGGGCAGGCCACACGGGCGTGTGTCATGGCCGTATTTCAAAGT
* *
80837131 CACGGGCAGGCCACATGGGCGTGTGTCATGGCCGTGTTTCAAAGT
1 CACGGGCAGGCCACACGGGCGTGTGTCATGGCCGTATTTCAAAGT
80837176 CA
1 CA
80837178 GTGTTGCACA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.18, C:0.23, G:0.35, T:0.24
Consensus pattern (45 bp):
CACGGGCAGGCCACACGGGCGTGTGTCATGGCCGTATTTCAAAGT
Found at i:80855323 original size:31 final size:31
Alignment explanation
Indices: 80855285--80855402 Score: 193
Period size: 31 Copynumber: 3.8 Consensus size: 31
80855275 ACAAATGACA
*
80855285 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80855316 AGTGAAAAGTGGTATCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
80855347 AGTGAAAAGTGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
80855378 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
80855403 AAGTGACAAG
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
30 2 0.02
31 77 0.95
32 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:80855579 original size:49 final size:49
Alignment explanation
Indices: 80855424--80855691 Score: 294
Period size: 49 Copynumber: 5.7 Consensus size: 49
80855414 GATTTCCGTA
* * * * * *
80855424 TAAGACCATATCTGGGATATGGCATCG--GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTAC-GTG
* * * *
80855471 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
* *
80855517 TAAGACCAAAGCTGGGTTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
*
80855566 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACATG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
*
80855615 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T--GTG
1 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
80855657 TAAGACCATAGCTGGGCTATGGCATC-ATTATGTGA
1 TAAGACCATAGCTGGGCTATGGCATCGA-TATGTGA
80855692 AGATGTGTAA
Statistics
Matches: 200, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
41 1 0.00
42 34 0.17
44 1 0.00
45 1 0.00
46 26 0.13
47 38 0.19
48 15 0.08
49 84 0.42
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
Found at i:80855659 original size:42 final size:42
Alignment explanation
Indices: 80855613--80855725 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 42
80855603 TGTGATTACA
*
80855613 TGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATC-ATTATATGAAGATG
*
80855655 TGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCATTATATGAAGATG
* **
80855697 TGTAAGACCATAGTTGAACTATGGCATCA
1 TGTAAGACCATAGCTGGGCTATGGCATCA
80855726 AGAAAACGAA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 1 0.02
42 64 0.98
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATAGCTGGGCTATGGCATCATTATATGAAGATG
Found at i:80859030 original size:68 final size:69
Alignment explanation
Indices: 80858920--80859078 Score: 196
Period size: 68 Copynumber: 2.3 Consensus size: 69
80858910 TCAACTTTTC
* *
80858920 CCTTCTCCCTCTTTTTCGTTCTCACGTCTGAAGCAACTTCTTTTTTTCA-TTCTTCCCATTTCCT
1 CCTTCT-CCTCTTTTTCATTCTCACATCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCT
80858984 TCCAA
65 TCCAA
* * * *
80858989 CCTTCTCCTCTTTTTCATTGTCACATCTTAATCATCTTCTTTTTTTCATTCTTCTTCCCATTTCC
1 CCTTCTCCTCTTTTTCATTCTCACATCTGAAGCAACTTCTTTTTTTCA-T-TTCTTCCCATTTCC
*
80859054 TTCCAT
64 TTCCAA
80859060 CCATGTCT-CTCTTTTTCAT
1 CC-T-TCTCCTCTTTTTCAT
80859079 GCTTCTATCC
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
68 36 0.46
69 6 0.08
71 21 0.27
72 12 0.15
73 3 0.04
ACGTcount: A:0.13, C:0.33, G:0.04, T:0.50
Consensus pattern (69 bp):
CCTTCTCCTCTTTTTCATTCTCACATCTGAAGCAACTTCTTTTTTTCATTTCTTCCCATTTCCTT
CCAA
Found at i:80859983 original size:3 final size:3
Alignment explanation
Indices: 80859969--80860036 Score: 129
Period size: 3 Copynumber: 23.0 Consensus size: 3
80859959 TGTAATCATG
80859969 ATT ATT -TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80860016 ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT
80860037 GTTTTTAAAG
Statistics
Matches: 64, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 62 0.97
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
ATT
Found at i:80863313 original size:43 final size:43
Alignment explanation
Indices: 80863250--80863334 Score: 152
Period size: 43 Copynumber: 2.0 Consensus size: 43
80863240 TCAGGAATTA
80863250 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
1 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
* *
80863293 GTTGGGTATCAAGTTGGAAAAGGCATCAAATTGGTTGCCTTA
1 GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTA
80863335 TGTATTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.31
Consensus pattern (43 bp):
GTTGGGTATCAAGTTAGAAAAGACATCAAATTGGTTGCCTTAG
Found at i:80863750 original size:17 final size:17
Alignment explanation
Indices: 80863730--80863762 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
80863720 ATTAAGAATG
80863730 TTATTAAATTAAATTTT
1 TTATTAAATTAAATTTT
*
80863747 TTATTAAATTATATTT
1 TTATTAAATTAAATTT
80863763 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAATTAAATTTT
Found at i:80863805 original size:52 final size:53
Alignment explanation
Indices: 80863707--80863823 Score: 150
Period size: 52 Copynumber: 2.2 Consensus size: 53
80863697 TTAATTCATA
* *
80863707 TAATAATAATTATATTAAGAATGTTATTAAATTAAATTTTTTATTAAATTATATT
1 TAATAATAATTATATTAAGAATGATATTAAATT-AATTTATTATTAAATTAT-TT
*
80863762 TAATAATAATTATGTTAA-AAT-ATAGTTAAATT-ATTTATTATTAAATTATTT
1 TAATAATAATTATATTAAGAATGATA-TTAAATTAATTTATTATTAAATTATTT
80863813 TCAATAATAAT
1 T-AATAATAAT
80863824 CTTATTTAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 7
0.85 0.04 0.10
Matches are distributed among these distances:
51 3 0.05
52 25 0.44
53 2 0.04
54 10 0.18
55 17 0.30
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (53 bp):
TAATAATAATTATATTAAGAATGATATTAAATTAATTTATTATTAAATTATTT
Found at i:80864017 original size:16 final size:16
Alignment explanation
Indices: 80863996--80864034 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
80863986 TGAATTACTG
**
80863996 ATTACAGCTTTATTCA
1 ATTACAGCCCTATTCA
*
80864012 ATTACAGCCCTATTCC
1 ATTACAGCCCTATTCA
80864028 ATTACAG
1 ATTACAG
80864035 TGAACCAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.31, C:0.26, G:0.08, T:0.36
Consensus pattern (16 bp):
ATTACAGCCCTATTCA
Found at i:80864240 original size:2 final size:2
Alignment explanation
Indices: 80864233--80864264 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
80864223 AAACAACCGA
80864233 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80864265 CAATACATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80866177 original size:48 final size:48
Alignment explanation
Indices: 80866071--80866436 Score: 228
Period size: 47 Copynumber: 7.7 Consensus size: 48
80866061 TGATATGTGT
* *
80866071 GCTAGTGTAAGA-TATGTCTGGGACAT-GCATCGGCCA-C-ATTATG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACATCGA-TA-GAAGA
* * * * * *
80866117 GCCACTGTAAGACCATGTCTAGGACATGGCTTCGACATTGAGAGAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATAGAAGA
* * * *
80866165 GCTAGTGTAAGA-CATGTATGGGACAT-GCATCGGC-TAC-A-AGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-CGATAGAAGA
* *
80866209 G-TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CG-TA-TAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATAGAAGA
* *
80866254 GCTGTCAGTGTAAGACCATGTCTGAGACATGGCATCGACA-CGGATATGTGAGA
1 GC--T-AGTGTAAGACCATGTCTGGGACATGGCATCGACATC-GATA-G-AAGA
** * * *
80866307 GCTAGTGTAAGACCATGTCTGGGACATGGTGTC-AGCCTCGATTTTG-ATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CATCGA--TAGAAGA
* * * * * *
80866356 GCCAATGTAAGACCATGTCTAGGACATGGCATCGAC-TTGATGGATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATAGAAGA
*
80866403 GCTAGTGTAAGACCATCTCTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
80866437 GTATTATACC
Statistics
Matches: 251, Mismatches: 43, Indels: 51
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.00
44 14 0.06
45 18 0.07
46 27 0.11
47 59 0.24
48 56 0.22
49 34 0.14
50 33 0.13
51 3 0.01
52 1 0.00
53 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATCGATAGAAGA
Found at i:80866328 original size:98 final size:95
Alignment explanation
Indices: 80866212--80866437 Score: 253
Period size: 99 Copynumber: 2.3 Consensus size: 95
80866202 AAGATGTGTC
* *
80866212 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACG-TATAGAGCT-GTCAGTGTAAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATAGA--TAGCCAATGTAAGACCATGT
80866275 CT-GAGACATGGCATCGACACGGATATGTGA-GAGCT
64 CTAG-GACATGGCATCGAC-CGG--ATG-GATGAGCT
** * * * *
80866310 AGTGTAAGACCATGTCTGGGACATGGTGTCAGCCTCGATTTTGATAGCCAATGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCACGATATAGATAGCCAATGTAAGACCATGTC
**
80866375 TAGGACATGGCATCGACTTGATGGATGAGCT
65 TAGGACATGGCATCGACCGGATGGATGAGCT
*
80866406 AGTGTAAGACCATCTCTGGGACATGGCATCGG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG
80866438 TATTATACCC
Statistics
Matches: 109, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
95 3 0.03
96 35 0.32
98 30 0.28
99 36 0.33
100 5 0.05
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGATATAGATAGCCAATGTAAGACCATGTCT
AGGACATGGCATCGACCGGATGGATGAGCT
Found at i:80867648 original size:20 final size:21
Alignment explanation
Indices: 80867609--80867648 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80867599 GTTATAATGA
80867609 CCACACAGGAATGTTGCCCTT
1 CCACACAGGAATGTTGCCCTT
* *
80867630 CCACACGGGCATG-TGCCCT
1 CCACACAGGAATGTTGCCCT
80867649 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.20, C:0.38, G:0.23, T:0.20
Consensus pattern (21 bp):
CCACACAGGAATGTTGCCCTT
Found at i:80868595 original size:13 final size:14
Alignment explanation
Indices: 80868569--80868597 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80868559 AATTATTGAA
80868569 TTACTAATTTAACC
1 TTACTAATTTAACC
80868583 TTACTAA-TTAACC
1 TTACTAATTTAACC
80868596 TT
1 TT
80868598 TAAATCACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.34, C:0.21, G:0.00, T:0.45
Consensus pattern (14 bp):
TTACTAATTTAACC
Found at i:80873281 original size:14 final size:16
Alignment explanation
Indices: 80873249--80873287 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
80873239 ATTTACATAA
*
80873249 CATATATCACCTATTT
1 CATATATCACCTATGT
80873265 CATATATCA-CT-TGT
1 CATATATCACCTATGT
80873279 CATATATCA
1 CATATATCA
80873288 TCATTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 2 0.09
16 9 0.41
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.41
Consensus pattern (16 bp):
CATATATCACCTATGT
Found at i:80880887 original size:39 final size:40
Alignment explanation
Indices: 80880809--80881026 Score: 372
Period size: 39 Copynumber: 5.5 Consensus size: 40
80880799 TTCGGATGAC
80880809 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
80880849 ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
80880888 ATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80880927 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80880967 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
80881007 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
80881027 TACTTGGGTT
Statistics
Matches: 172, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
39 93 0.54
40 77 0.45
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:80881022 original size:118 final size:118
Alignment explanation
Indices: 80880809--80881026 Score: 377
Period size: 118 Copynumber: 1.8 Consensus size: 118
80880799 TTCGGATGAC
80880809 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
* *
80880874 GTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACTAT
66 GTGCGAGTGACTATATCCGGGCTAAATCCCGAAGGCATTGTGCTAGTGACTAT
*
80880927 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA-T
80880992 TGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
65 TGTGCGAG-TGACTATATCCGGGCTAAATCCCGAAGG
80881027 TACTTGGGTT
Statistics
Matches: 95, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
118 77 0.81
119 16 0.17
120 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (118 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
GTGCGAGTGACTATATCCGGGCTAAATCCCGAAGGCATTGTGCTAGTGACTAT
Found at i:80886642 original size:25 final size:25
Alignment explanation
Indices: 80886613--80886664 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
80886603 CGGTGAAAGT
80886613 AAAATTTTCGGAGTTGATTTGATTA
1 AAAATTTTCGGAGTTGATTTGATTA
80886638 AAAATTTTCGGAGTTGATTTGATTA
1 AAAATTTTCGGAGTTGATTTGATTA
80886663 AA
1 AA
80886665 GATGCTGAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (25 bp):
AAAATTTTCGGAGTTGATTTGATTA
Found at i:80888829 original size:28 final size:28
Alignment explanation
Indices: 80888763--80888859 Score: 169
Period size: 28 Copynumber: 3.5 Consensus size: 28
80888753 ATAGTGAGTC
*
80888763 CGCACACTTAGTGCTATATAATC-AATT
1 CGCACACTTAGTGCTATATAATCAAACT
80888790 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
80888818 CGCACACTTAGTGCTATATAATCAAACC
1 CGCACACTTAGTGCTATATAATCAAACT
80888846 CGCACACTTAGTGC
1 CGCACACTTAGTGC
80888860 CAATCTCATG
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 23 0.34
28 44 0.66
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:80892529 original size:39 final size:40
Alignment explanation
Indices: 80892451--80892667 Score: 327
Period size: 39 Copynumber: 5.5 Consensus size: 40
80892441 TTCGGATGAC
80892451 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
80892491 ATCCGGGCTAAGTCCTGAAGGCA-TTGTGCTGGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80892530 ATCCGGGCTAAGTCCCAAAGGCA-TTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
80892569 ATCCGGGCTAAG-CCCGAAGGCATTTGTGCTATTGACTGT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
80892608 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
80892648 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
80892668 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 12, Indels: 7
0.90 0.07 0.04
Matches are distributed among these distances:
38 9 0.06
39 104 0.64
40 47 0.29
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:80894539 original size:48 final size:47
Alignment explanation
Indices: 80894181--80894539 Score: 256
Period size: 46 Copynumber: 7.6 Consensus size: 47
80894171 CGATGTCAGC
*
80894181 TCCCAAACATGGTCTTACACTGGCTCATC-CATCAA-GTCGATGCCATG
1 TCCCAAACATGGTCTTACACTGGCTC-TCTC-TCAATGCCGATGCCATG
* * * * ** * * **
80894228 TCCTAGACATGGTCTTACACTGACTATCGAAATCGAGGCCGACACCATG
1 TCCCAAACATGGTCTTACACTGGCTCTC--TCTCAATGCCGATGCCATG
* * * **
80894277 TCCCAAACATGGTCTTACACTAGCTTTCATATATCCGTGCCGATGCCATG
1 TCCCAAACATGGTCTTACACTGGC--TC-TCTCTCAATGCCGATGCCATG
* * *
80894327 TCCCAGACATGGTCTTACACTGACAC-CTCT-ATACGTGCCGATGCCATG
1 TCCCAAACATGGTCTTACACTGGCTCTCTCTCA-A--TGCCGATGCCATG
* *
80894375 TCCCAAACATGGTCTTACACTGACACATCTCGT--A-GCCGATG-CATG
1 TCCCAAACATGGTCTTACACTGGCTC-TCTC-TCAATGCCGATGCCATG
* * * *
80894420 TCCCAGACAT-GTCTTACACTAGCT-TACATCTCGAGGCCGATG-CATG
1 TCCCAAACATGGTCTTACACTGGCTCT-C-TCTCAATGCCGATGCCATG
* *
80894466 TCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATG
1 TCCCAAACATGGTCTTACACTGGCTCTC-TCTCAATGCCGATGCCATG
80894513 TCCCAAACATGGTCTTACACTGGCTCT
1 TCCCAAACATGGTCTTACACTGGCTCT
80894540 TATAATGTGG
Statistics
Matches: 252, Mismatches: 39, Indels: 41
0.76 0.12 0.12
Matches are distributed among these distances:
42 1 0.00
43 2 0.01
44 13 0.05
45 14 0.06
46 59 0.23
47 36 0.14
48 57 0.23
49 30 0.12
50 37 0.15
51 2 0.01
52 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
TCCCAAACATGGTCTTACACTGGCTCTCTCTCAATGCCGATGCCATG
Found at i:80894559 original size:94 final size:96
Alignment explanation
Indices: 80894181--80894579 Score: 350
Period size: 94 Copynumber: 4.2 Consensus size: 96
80894171 CGATGTCAGC
* ** *
80894181 TCCCAAACATGGTCTTACACTGGCTCATCCATCAAGT--CGATGCCATGTCCTAGACATGGTCTT
1 TCCCAAACATGGTCTTACACTAGCTC-T-CATCTCGTGCCGATGCCATGTCCCAGACATGGTCTT
* * **
80894244 ACACTGACTATCGA-AATCGAGGCCGACACCATG
64 ACACTGACTCTCTATAATCGAGGCCGA-TGCATG
* *
80894277 TCCCAAACATGGTCTTACACTAGCTTTCATATATCCGTGCCGATGCCATGTCCCAGACATGGTCT
1 TCCCAAACATGGTCTTACACTAGCTCTC--ATCT-CGTGCCGATGCCATGTCCCAGACATGGTCT
* *
80894342 TACACTGACACCTCTAT-A-CG-TGCCGATGCCATG
63 TACACTGAC-TCTCTATAATCGAGGCCGATG-CATG
* *
80894375 TCCCAAACATGGTCTTACACT-G-ACACATCTCGTAGCCGATG-CATGTCCCAGACAT-GTCTTA
1 TCCCAAACATGGTCTTACACTAGCTCTCATCTCGT-GCCGATGCCATGTCCCAGACATGGTCTTA
*
80894436 CACT-AGCT-TAC-AT-CTCGAGGCCGATGCATG
65 CACTGA-CTCT-CTATAATCGAGGCCGATGCATG
* * * *
80894466 TCCCAGACAT-GTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAAACATGGTCTTA
1 TCCCAAACATGGTCTTACACTAGCTCTCATCTC-GTGCCGATGCCATGTCCCAGACATGGTCTTA
* *
80894530 CACTGGCTCT-TATAAT-GTGGCCGGA-GCATG
65 CACTGACTCTCTATAATCGAGGCC-GATGCATG
*
80894560 TCCCAGACAT-GTCTTACACT
1 TCCCAAACATGGTCTTACACT
80894580 GGTGCACAAA
Statistics
Matches: 252, Mismatches: 28, Indels: 48
0.77 0.09 0.15
Matches are distributed among these distances:
90 13 0.05
91 18 0.07
92 31 0.12
93 31 0.12
94 55 0.22
95 5 0.02
96 27 0.11
97 3 0.01
98 30 0.12
99 35 0.14
100 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (96 bp):
TCCCAAACATGGTCTTACACTAGCTCTCATCTCGTGCCGATGCCATGTCCCAGACATGGTCTTAC
ACTGACTCTCTATAATCGAGGCCGATGCATG
Found at i:80899283 original size:21 final size:21
Alignment explanation
Indices: 80899248--80899301 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
80899238 ATTATTACGA
** * *
80899248 AGGAAGTTGCAGCTATAGAAG
1 AGGAAGTTGTTGCTAAAAAAG
80899269 AGGAAGTTGTTGCTAAAAAAG
1 AGGAAGTTGTTGCTAAAAAAG
*
80899290 AAGAAGTTGTTG
1 AGGAAGTTGTTG
80899302 AAAATTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.39, C:0.06, G:0.31, T:0.24
Consensus pattern (21 bp):
AGGAAGTTGTTGCTAAAAAAG
Found at i:80900323 original size:21 final size:22
Alignment explanation
Indices: 80900275--80900323 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
80900265 AAATATATAT
80900275 GATATAAATACTTAGTATTGTA
1 GATATAAATACTTAGTATTGTA
*
80900297 CA-ATAAATA-TT-GTATTGGTA
1 GATATAAATACTTAGTATT-GTA
80900317 GATATAA
1 GATATAA
80900324 CTTAAGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 5 0.22
20 6 0.26
21 11 0.48
22 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (22 bp):
GATATAAATACTTAGTATTGTA
Found at i:80905143 original size:23 final size:23
Alignment explanation
Indices: 80905040--80905176 Score: 109
Period size: 23 Copynumber: 5.8 Consensus size: 23
80905030 TACCGATATA
80905040 TCAGCTC-ATAAGAGCTTACTATTT
1 TCAGCTCAAT-AGAGCTTACTA-TT
* * *
80905064 TCAGCTCATTGGAGCTTACTGTT
1 TCAGCTCAATAGAGCTTACTATT
* *
80905087 TCAACTC-GTATGAGCTTACTA-T
1 TCAGCTCAATA-GAGCTTACTATT
** *
80905109 TCAGCTTGATAGAGCTTACCATT
1 TCAGCTCAATAGAGCTTACTATT
*
80905132 TCAGCTCAATAGAGCTTACTGTT
1 TCAGCTCAATAGAGCTTACTATT
*
80905155 CATCAGCTCAAGAGGAGCTTAC
1 --TCAGCTCAATA-GAGCTTAC
80905177 CGGTCATGGC
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
22 16 0.18
23 39 0.43
24 16 0.18
25 11 0.12
26 8 0.09
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (23 bp):
TCAGCTCAATAGAGCTTACTATT
Found at i:80905147 original size:68 final size:72
Alignment explanation
Indices: 80905018--80905154 Score: 185
Period size: 68 Copynumber: 1.9 Consensus size: 72
80905008 CTCGCCACAG
* * *
80905018 CTCGTATGAGCTTACCGATATATCAGCTCATAAGAGCTTACTATTTTCAGCTCATTGGAGCTTAC
1 CTCGTATGAGCTTACC-ATATATCAGCTCATAAGAGCTTACCATTTTCAGCTCAATAGAGCTTAC
80905083 TGTTTCAA
65 TGTTTCAA
*
80905091 CTCGTATGAGCTTA-C-TAT-TCAGCTTGAT-AGAGCTTACCA-TTTCAGCTCAATAGAGCTTAC
1 CTCGTATGAGCTTACCATATATCAGC-TCATAAGAGCTTACCATTTTCAGCTCAATAGAGCTTAC
80905151 TGTT
65 TGTT
80905155 CATCAGCTCA
Statistics
Matches: 59, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
68 23 0.39
69 15 0.25
70 6 0.10
72 1 0.02
73 14 0.24
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.36
Consensus pattern (72 bp):
CTCGTATGAGCTTACCATATATCAGCTCATAAGAGCTTACCATTTTCAGCTCAATAGAGCTTACT
GTTTCAA
Found at i:80905183 original size:26 final size:25
Alignment explanation
Indices: 80905132--80905183 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
80905122 GCTTACCATT
* * *
80905132 TCAGCTCAATAGAGCTTACTGTTCA
1 TCAGCTCAAGAGAGCTTACCGGTCA
80905157 TCAGCTCAAGAGGAGCTTACCGGTCA
1 TCAGCTCAAGA-GAGCTTACCGGTCA
80905183 T
1 T
80905184 GGCTCGGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (25 bp):
TCAGCTCAAGAGAGCTTACCGGTCA
Found at i:80905396 original size:20 final size:19
Alignment explanation
Indices: 80905325--80905400 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 19
80905315 AGATATGTGT
80905325 TTATATGGATGAATTACTG
1 TTATATGGATGAATTACTG
*
80905344 TTGATACGGATGAATTACTG
1 TT-ATATGGATGAATTACTG
*
80905364 TTATTACT-GATGAACTACTGG
1 TTA-TA-TGGATGAATTACT-G
*
80905385 TTATATGAATGAATTA
1 TTATATGGATGAATTA
80905401 TAGTTTATAC
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
19 4 0.09
20 39 0.83
21 4 0.09
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (19 bp):
TTATATGGATGAATTACTG
Found at i:80906731 original size:14 final size:13
Alignment explanation
Indices: 80906702--80906746 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
80906692 AGTGGGTGGA
80906702 AATAATATT-A-T
1 AATAATATTAAGT
80906713 AATAATATTAAAGT
1 AATAATATT-AAGT
*
80906727 TATAATA-TAAGT
1 AATAATATTAAGT
80906739 AATAATAT
1 AATAATAT
80906747 GTATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 9 0.32
12 10 0.36
13 2 0.07
14 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATATTAAGT
Found at i:80907132 original size:9 final size:9
Alignment explanation
Indices: 80907118--80907146 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
80907108 GACTAAAATG
80907118 TGAAATAAA
1 TGAAATAAA
80907127 TGAAATAAA
1 TGAAATAAA
80907136 TGAAATAAA
1 TGAAATAAA
80907145 TG
1 TG
80907147 GACTAGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:80908070 original size:50 final size:51
Alignment explanation
Indices: 80907889--80908081 Score: 153
Period size: 50 Copynumber: 3.8 Consensus size: 51
80907879 ATCTTGTATT
* * *
80907889 TATTCGGCCACATAGGTATGTACATATGTGACGTTATA-TTGAATCTTGAA
1 TATTCGGCCATATAGGTATGCACATATGTGATGTTATATTTGAATCTTGAA
* * * * * *
80907939 TATTTGACCATGA-AGGTATGCACAAAAGTGATATTATATTTGAAT-TTGTA
1 TATTCGGCCAT-ATAGGTATGCACATATGTGATGTTATATTTGAATCTTGAA
* * * * * * *
80907989 TATTCAGCCATAT-GAGTAAGTACTTAGGTGATGTTAAATTTG-ATCTTGCA
1 TATTCGGCCATATAG-GTATGCACATATGTGATGTTATATTTGAATCTTGAA
* * * *
80908039 TATTTGGCCATATAGGTATGCACATTTGTGATATTATCTTTGA
1 TATTCGGCCATATAGGTATGCACATATGTGATGTTATATTTGA
80908082 TTCTCTATAA
Statistics
Matches: 106, Mismatches: 30, Indels: 13
0.71 0.20 0.09
Matches are distributed among these distances:
49 4 0.04
50 94 0.89
51 8 0.08
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (51 bp):
TATTCGGCCATATAGGTATGCACATATGTGATGTTATATTTGAATCTTGAA
Found at i:80914791 original size:66 final size:68
Alignment explanation
Indices: 80914715--80914901 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
80914705 TAGTACCACT
*
80914715 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
80914777 CACG
65 CACG
80914781 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
80914846 ATCACG
63 ATCACG
80914852 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
80914902 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:80914826 original size:71 final size:71
Alignment explanation
Indices: 80914738--80914901 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80914728 CGATTTGTCT
80914738 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80914803 CTTTCA
66 CTTTCA
80914809 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80914874 CTTTCA
66 CTTTCA
80914880 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80914902 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80914939 original size:71 final size:70
Alignment explanation
Indices: 80914738--80914935 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
80914728 CGATTTGTCT
* * *
80914738 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80914803 CTTTCA
65 CTTTCA
* * *
80914809 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80914874 CTTTCA
65 CTTTCA
* *
80914880 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
80914936 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80922361 original size:66 final size:68
Alignment explanation
Indices: 80922285--80922471 Score: 281
Period size: 71 Copynumber: 2.7 Consensus size: 68
80922275 TAGTACCACT
*
80922285 CATGCGACCTAGC-CGATTTGTC-T-CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCAC-ATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
80922347 CACG
65 CACG
80922351 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGA
80922416 ATCACG
63 ATCACG
80922422 CATGCGACCTAGCTACATTTATCTTTCACGTAGCTCTCTTGTCTACATGG
1 CATGCGACCTAGC-ACATTTATC-TT-ACGTAGCTCTCTTGTCTACATGG
80922472 GATACATCTC
Statistics
Matches: 114, Mismatches: 1, Indels: 7
0.93 0.01 0.06
Matches are distributed among these distances:
66 13 0.11
67 6 0.05
68 1 0.01
69 1 0.01
71 93 0.82
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (68 bp):
CATGCGACCTAGCACATTTATCTTACGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATC
ACG
Found at i:80922396 original size:71 final size:71
Alignment explanation
Indices: 80922308--80922471 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
80922298 CGATTTGTCT
80922308 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80922373 CTTTCA
66 CTTTCA
80922379 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
80922444 CTTTCA
66 CTTTCA
80922450 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
80922472 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:80922509 original size:71 final size:70
Alignment explanation
Indices: 80922308--80922505 Score: 276
Period size: 71 Copynumber: 2.8 Consensus size: 70
80922298 CGATTTGTCT
* * *
80922308 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80922373 CTTTCA
65 CTTTCA
* * *
80922379 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACGCATGCGACCTAGCTACATTTAT
80922444 CTTTCA
65 CTTTCA
* *
80922450 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACGCATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACGCATGCGACCTAGCTAC
80922506 TACAGGGTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 23 0.19
69 1 0.01
70 1 0.01
71 96 0.79
ACGTcount: A:0.20, C:0.28, G:0.18, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACGCATGCGACCTAGCTACATTTATC
TTTCA
Found at i:80924600 original size:14 final size:13
Alignment explanation
Indices: 80924571--80924615 Score: 51
Period size: 12 Copynumber: 3.6 Consensus size: 13
80924561 AGTGGGTGGA
80924571 AATAATATT-A-T
1 AATAATATTAAGT
80924582 AATAATATTAAAGT
1 AATAATATT-AAGT
*
80924596 TATAATA-TAAGT
1 AATAATATTAAGT
80924608 AATAATAT
1 AATAATAT
80924616 GTATATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 9 0.32
12 10 0.36
13 2 0.07
14 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAATATTAAGT
Found at i:80925006 original size:9 final size:9
Alignment explanation
Indices: 80924992--80925020 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
80924982 GACTAAAATG
80924992 TGAAATAAA
1 TGAAATAAA
80925001 TGAAATAAA
1 TGAAATAAA
80925010 TGAAATAAA
1 TGAAATAAA
80925019 TG
1 TG
80925021 GACTAGTATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (9 bp):
TGAAATAAA
Found at i:80928279 original size:39 final size:40
Alignment explanation
Indices: 80928159--80928374 Score: 226
Period size: 40 Copynumber: 5.5 Consensus size: 40
80928149 AAACCAAGTA
* ** * *
80928159 CCTTCGGG-TTTAG-CCGGATATAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
* *
80928197 CCTTCGGGACTTAGCCCGGTTATGGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
* *
80928237 CCTTCGGGACTTAGCCCGG-TATAATAACTTGCACAAACG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
* * *
80928276 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
* ** * *
80928316 CCTTCGGGACTTAGCCCAGA-ATTAGCCACTAGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTTGCACAAATG
80928356 -CTCTCGGGACTTAGCCCGG
1 CCT-TCGGGACTTAGCCCGG
80928375 TTATCATCCG
Statistics
Matches: 150, Mismatches: 23, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
38 8 0.05
39 43 0.29
40 99 0.66
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
Found at i:80936318 original size:40 final size:40
Alignment explanation
Indices: 80936244--80936489 Score: 286
Period size: 40 Copynumber: 6.2 Consensus size: 40
80936234 CCTTCGGAGT
** * *
80936244 TTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
80936283 TTAGCCCGGTTATGGTAACTTGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
80936323 TTAGCCC-GATATAATAACTCGCACAAACGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
80936362 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTC-GGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
80936401 TTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
** * *
80936441 TTAGCCCGGA-ATTAGCCACTAGCTCAAATG-CTCTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCT-TCGGGAC
80936481 TTAGCCCGG
1 TTAGCCCGG
80936490 TTATCATCCG
Statistics
Matches: 181, Mismatches: 21, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 80 0.44
40 101 0.56
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:80936363 original size:79 final size:79
Alignment explanation
Indices: 80936232--80936489 Score: 272
Period size: 79 Copynumber: 3.3 Consensus size: 79
80936222 TCAAACCAAG
* *** * * *
80936232 TGCCTTCGGAGTTTAG-CCGGATATAGCCACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTAT
1 TGCCTTCGGA-CTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* *
80936296 GGTAACTTGCACAAA
65 AGTAACTCGCACAAA
*
80936311 TGCCTTCGGGACTTAGCCC-GATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTC-GGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
* *
80936375 AGTAGCTCGCACGAA
65 AGTAACTCGCACAAA
* * *
80936390 TGCCTTCGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTTAGCCCGGA-ATT
1 TGCCTTCGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
** * *
80936454 AGCCACTAGCTCAAA
65 AGTAACTCGCACAAA
80936469 TG-CTCTCGGGACTTAGCCCGG
1 TGCCT-TC-GGACTTAGCCCGG
80936490 TTATCATCCG
Statistics
Matches: 151, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
78 14 0.09
79 119 0.79
80 18 0.12
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (79 bp):
TGCCTTCGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATA
GTAACTCGCACAAA
Found at i:80938486 original size:27 final size:27
Alignment explanation
Indices: 80938445--80938557 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
80938435 GAGGAAGCGT
*
80938445 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
80938472 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
80938499 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
80938527 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
80938553 TCTGG
1 TCTGG
80938558 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:80938550 original size:54 final size:54
Alignment explanation
Indices: 80938443--80938557 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
80938433 TGGAGGAAGC
*
80938443 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
80938497 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
80938551 GTTCTGG
1 GTTCTGG
80938558 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:80938643 original size:19 final size:22
Alignment explanation
Indices: 80938619--80938658 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 22
80938609 CTCCCCACAC
80938619 GGTGTA-A-GGTTGG-TATGGG
1 GGTGTATACGGTTGGATATGGG
80938638 GGTGTATACGGTTGGATATGG
1 GGTGTATACGGTTGGATATGG
80938659 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 6 0.33
22 5 0.28
ACGTcount: A:0.17, C:0.03, G:0.47, T:0.33
Consensus pattern (22 bp):
GGTGTATACGGTTGGATATGGG
Found at i:80939671 original size:17 final size:19
Alignment explanation
Indices: 80939651--80939687 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
80939641 TACTAAATAA
80939651 TTTA-TTGTAATAT-TATT
1 TTTATTTGTAATATCTATT
*
80939668 TTTATTTTTAATATCTATT
1 TTTATTTGTAATATCTATT
80939687 T
1 T
80939688 CAATTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (19 bp):
TTTATTTGTAATATCTATT
Found at i:80948648 original size:23 final size:22
Alignment explanation
Indices: 80948613--80948694 Score: 80
Period size: 23 Copynumber: 3.7 Consensus size: 22
80948603 ACTACCATAC
*
80948613 TTTTT-AT-TAAATTCTAATTAT
1 TTTTTAATGTAAATTATAATT-T
80948634 TTTTTAATGTAAATTATAATTT
1 TTTTTAATGTAAATTATAATTT
* *
80948656 TTTTAAATGTATAATTATCACTTT
1 TTTTTAATGTA-AATTAT-AATTT
80948680 TATTTT-ATGTAAATT
1 T-TTTTAATGTAAATT
80948695 TTTTAACTAA
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
21 5 0.10
22 13 0.25
23 21 0.40
24 10 0.19
25 3 0.06
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (22 bp):
TTTTTAATGTAAATTATAATTT
Found at i:80948827 original size:7 final size:7
Alignment explanation
Indices: 80948806--80948846 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
80948796 AAACTCATGC
80948806 TTATATA
1 TTATATA
80948813 TATATATA
1 T-TATATA
80948821 TTATATA
1 TTATATA
* *
80948828 GTATAGA
1 TTATATA
80948835 TTATATA
1 TTATATA
80948842 TTATA
1 TTATA
80948847 ATCACTACAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (7 bp):
TTATATA
Found at i:80951477 original size:15 final size:17
Alignment explanation
Indices: 80951445--80951486 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
80951435 AAGATGAAAT
*
80951445 AAAATATTTTATATTAA
1 AAAATATATTATATTAA
80951462 AAAATATATTA-A-TAA
1 AAAATATATTATATTAA
80951477 AAAAT-TATTA
1 AAAATATATTA
80951487 GTAGAGTCGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 5 0.21
15 8 0.33
16 1 0.04
17 10 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAATATATTATATTAA
Found at i:80953577 original size:41 final size:41
Alignment explanation
Indices: 80953506--80953603 Score: 189
Period size: 41 Copynumber: 2.4 Consensus size: 41
80953496 AGGTTATCAA
80953506 ATTAGTGAATTTAG-AAAAAAATACTTAGTTGTGGAAAGCT
1 ATTAGTGAATTTAGAAAAAAAATACTTAGTTGTGGAAAGCT
80953546 ATTAGTGAATTTAGAAAAAAAATACTTAGTTGTGGAAAGCT
1 ATTAGTGAATTTAGAAAAAAAATACTTAGTTGTGGAAAGCT
80953587 ATTAGTGAATTTAGAAA
1 ATTAGTGAATTTAGAAA
80953604 TTAGTGAATT
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
40 14 0.25
41 43 0.75
ACGTcount: A:0.44, C:0.04, G:0.19, T:0.33
Consensus pattern (41 bp):
ATTAGTGAATTTAGAAAAAAAATACTTAGTTGTGGAAAGCT
Found at i:80953608 original size:16 final size:16
Alignment explanation
Indices: 80953587--80953619 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
80953577 GTGGAAAGCT
80953587 ATTAGTGAATTTAGAA
1 ATTAGTGAATTTAGAA
80953603 ATTAGTGAATTTAGAA
1 ATTAGTGAATTTAGAA
80953619 A
1 A
80953620 AAAAAATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.18, T:0.36
Consensus pattern (16 bp):
ATTAGTGAATTTAGAA
Found at i:80954151 original size:18 final size:17
Alignment explanation
Indices: 80954106--80954188 Score: 57
Period size: 19 Copynumber: 4.8 Consensus size: 17
80954096 GACATGTGAC
*
80954106 AAAAAAATAAAA--AAT
1 AAAAATATAAAATTAAT
80954121 AAAAATCAATAAAAGTT-AT
1 AAAAAT--ATAAAA-TTAAT
80954140 AAAAATATTAAATATTAAT
1 AAAAATA-TAAA-ATTAAT
*
80954159 AAAAATATAAAAAT-AT
1 AAAAATATAAAATTAAT
*
80954175 AAACAATAGAAAAT
1 AAA-AATATAAAAT
80954189 ATTATAAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 16
0.73 0.05 0.21
Matches are distributed among these distances:
15 5 0.09
16 5 0.09
17 17 0.31
18 10 0.18
19 18 0.33
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAAATATAAAATTAAT
Found at i:80954167 original size:27 final size:27
Alignment explanation
Indices: 80954106--80954174 Score: 79
Period size: 28 Copynumber: 2.6 Consensus size: 27
80954096 GACATGTGAC
*
80954106 AAAAAAATAAAAA-A-TAAAAATCAAT
1 AAAAATATAAAAATATTAAAAATCAAT
* * *
80954131 AAAAGTTATAAAAATATTAAATATTAAT
1 AAAA-ATATAAAAATATTAAAAATCAAT
80954159 AAAAATATAAAAATAT
1 AAAAATATAAAAATAT
80954175 AAACAATAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 4 0.11
26 7 0.19
27 12 0.33
28 13 0.36
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (27 bp):
AAAAATATAAAAATATTAAAAATCAAT
Found at i:80954182 original size:9 final size:8
Alignment explanation
Indices: 80954106--80954197 Score: 60
Period size: 8 Copynumber: 10.5 Consensus size: 8
80954096 GACATGTGAC
*
80954106 AAAAAAAT
1 AAAAATAT
80954114 AAAAA-AT
1 AAAAATAT
80954121 AAAAATCAAT
1 AAAAAT--AT
*
80954131 AAAAGTTAT
1 AAAA-ATAT
80954140 AAAAATATT
1 AAAAATA-T
*
80954149 AAATATTAAT
1 AAA-AAT-AT
80954159 AAAAATAT
1 AAAAATAT
80954167 AAAAATAT
1 AAAAATAT
*
80954175 AAACAATAG
1 AAA-AATAT
80954184 AAAATATTAT
1 AAAA-A-TAT
80954194 AAAA
1 AAAA
80954198 TTCGTAAAAA
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
7 7 0.10
8 21 0.31
9 20 0.29
10 18 0.26
11 2 0.03
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (8 bp):
AAAAATAT
Found at i:80954189 original size:36 final size:37
Alignment explanation
Indices: 80954118--80954197 Score: 94
Period size: 36 Copynumber: 2.2 Consensus size: 37
80954108 AAAAATAAAA
* **
80954118 AATAAAAATCAATAAAAGTTATAAAAATATTAAATATT
1 AATAAAAAT-AATAAAAGATATAAAAATAGAAAATATT
80954156 AATAAAAAT-ATAAAA-ATATAAACAATAGAAAATATT
1 AATAAAAATAATAAAAGATATAAA-AATAGAAAATATT
80954192 -ATAAAA
1 AATAAAA
80954198 TTCGTAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 12 0.32
36 17 0.45
38 9 0.24
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (37 bp):
AATAAAAATAATAAAAGATATAAAAATAGAAAATATT
Found at i:80954196 original size:19 final size:18
Alignment explanation
Indices: 80954136--80954197 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 18
80954126 TCAATAAAAG
*
80954136 TTATAAAAATATTAAATA
1 TTATAAAAATATAAAATA
80954154 TTAATAAAAATATAAAA-A
1 TT-ATAAAAATATAAAATA
*
80954172 -TATAAACAATAGAAAATA
1 TTATAAA-AATATAAAATA
80954190 TTATAAAA
1 TTATAAAA
80954198 TTCGTAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 5 0.13
17 9 0.24
18 5 0.13
19 19 0.50
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
TTATAAAAATATAAAATA
Found at i:80954436 original size:37 final size:36
Alignment explanation
Indices: 80954376--80954482 Score: 101
Period size: 37 Copynumber: 2.9 Consensus size: 36
80954366 GTTAAAGGTC
*
80954376 TTTTTAATACATTTTATAA-TTTTATAAAATTTTACAAA
1 TTTTTAAT-TATTTT-TAATTTTTATAAAATTTTA-AAA
* **
80954414 TTTTTTATTATTTTTAATTTTTATAATTTTATTAAAA
1 TTTTTAATTATTTTTAATTTTTATAAAATT-TTAAAA
* *
80954451 TTTTTAATT-TTTATTAATTTTTTTATAATTTT
1 TTTTTAATTATTT-TTAATTTTTATAAAATTTT
80954483 TTGTCAAATG
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
36 8 0.14
37 39 0.68
38 10 0.18
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (36 bp):
TTTTTAATTATTTTTAATTTTTATAAAATTTTAAAA
Found at i:80954453 original size:27 final size:28
Alignment explanation
Indices: 80954423--80954483 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
80954413 ATTTTTTATT
80954423 ATTTTTAATTTTTA-TAATTTTATTAAA
1 ATTTTTAATTTTTATTAATTTTATTAAA
* *
80954450 ATTTTTAATTTTTATTAATTTTTTTATA
1 ATTTTTAATTTTTATTAATTTTATTAAA
80954478 ATTTTT
1 ATTTTT
80954484 TGTCAAATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 14 0.45
28 17 0.55
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (28 bp):
ATTTTTAATTTTTATTAATTTTATTAAA
Found at i:80954462 original size:19 final size:20
Alignment explanation
Indices: 80954429--80954482 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
80954419 TATTATTTTT
80954429 AATTTTTATAATTTTATTAA
1 AATTTTTATAATTTTATTAA
*
80954449 AATTTTTA-ATTTTTATTAA
1 AATTTTTATAATTTTATTAA
**
80954468 TTTTTTTATAATTTT
1 AATTTTTATAATTTT
80954483 TTGTCAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
AATTTTTATAATTTTATTAA
Found at i:80954472 original size:11 final size:10
Alignment explanation
Indices: 80954414--80954484 Score: 51
Period size: 9 Copynumber: 7.4 Consensus size: 10
80954404 ATTTTACAAA
80954414 TTTTTT-ATT
1 TTTTTTAATT
*
80954423 ATTTTTAA-T
1 TTTTTTAATT
*
80954432 TTTTATAA-T
1 TTTTTTAATT
* *
80954441 TTTATTAA-A
1 TTTTTTAATT
*
80954450 ATTTTTAATT
1 TTTTTTAATT
*
80954460 TTTATTAATT
1 TTTTTTAATT
80954470 TTTTTATAATT
1 TTTTT-TAATT
80954481 TTTT
1 TTTT
80954485 GTCAAATGTC
Statistics
Matches: 47, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
9 25 0.53
10 13 0.28
11 9 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTTTAATT
Found at i:80954482 original size:9 final size:9
Alignment explanation
Indices: 80954387--80954483 Score: 51
Period size: 8 Copynumber: 10.4 Consensus size: 9
80954377 TTTTAATACA
80954387 TTTTATAA-
1 TTTTATAAT
*
80954395 TTTTATAAAA
1 TTTTAT-AAT
*
80954405 TTTTACAAAT
1 TTTTA-TAAT
80954415 TTTT-T-AT
1 TTTTATAAT
*
80954422 TATTTTTAAT
1 T-TTTATAAT
80954432 TTTTATAA-
1 TTTTATAAT
*
80954440 TTTTATTAAAA
1 TTTTA-T-AAT
80954451 TTTT-TAAT
1 TTTTATAAT
80954459 TTTTATTAATTT
1 TTTTA-TAA--T
80954471 TTTTATAAT
1 TTTTATAAT
80954480 TTTT
1 TTTT
80954484 TGTCAAATGT
Statistics
Matches: 71, Mismatches: 5, Indels: 25
0.70 0.05 0.25
Matches are distributed among these distances:
7 3 0.04
8 20 0.28
9 16 0.23
10 19 0.27
11 7 0.10
12 6 0.08
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTTATAAT
Found at i:80954484 original size:10 final size:10
Alignment explanation
Indices: 80954387--80954484 Score: 52
Period size: 10 Copynumber: 10.4 Consensus size: 10
80954377 TTTTAATACA
80954387 TTTTATAATT
1 TTTTATAATT
* *
80954397 TTATAAAATT
1 TTTTATAATT
**
80954407 TTACA-AATT
1 TTTTATAATT
*
80954416 TTTTAT--TA
1 TTTTATAATT
80954424 TTTT-TAA-T
1 TTTTATAATT
80954432 TTTTATAATT
1 TTTTATAATT
*
80954442 TTATTA-AA-A
1 TT-TTATAATT
80954451 TTTT-TAA-T
1 TTTTATAATT
80954459 TTTTATTAATTT
1 TTTTA-TAA-TT
80954471 TTTTATAATT
1 TTTTATAATT
80954481 TTTT
1 TTTT
80954485 GTCAAATGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
7 1 0.01
8 17 0.25
9 12 0.18
10 26 0.38
11 6 0.09
12 6 0.09
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (10 bp):
TTTTATAATT
Found at i:80960566 original size:15 final size:15
Alignment explanation
Indices: 80960542--80960578 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
80960532 ACCAAGCTAG
* *
80960542 AGCTGAATCCGAGGA
1 AGCTGGATCCGAAGA
80960557 AGCTGGATCCGAAGA
1 AGCTGGATCCGAAGA
80960572 AGCTGGA
1 AGCTGGA
80960579 AGCAATGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.32, C:0.19, G:0.35, T:0.14
Consensus pattern (15 bp):
AGCTGGATCCGAAGA
Found at i:80971269 original size:26 final size:26
Alignment explanation
Indices: 80971240--80971291 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
80971230 AGAAAAGAAA
80971240 AAGAAAAATAAAGAATACACAGATTT
1 AAGAAAAATAAAGAATACACAGATTT
80971266 AAGAAAAATAAAGAATACACAGATTT
1 AAGAAAAATAAAGAATACACAGATTT
80971292 TTACGTGGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.19
Consensus pattern (26 bp):
AAGAAAAATAAAGAATACACAGATTT
Found at i:80971512 original size:5 final size:5
Alignment explanation
Indices: 80971502--80971526 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
80971492 AATCTTATTC
80971502 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
80971527 GAAGTGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:80971686 original size:29 final size:29
Alignment explanation
Indices: 80971628--80971686 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
80971618 TCCACATTGA
* * *
80971628 CACGAATTCTCAATGAATAAGTTATTCAC
1 CACGAACTCTCAATGAACAAGTTATCCAC
* *
80971657 CACGAACTCTTAATGAACAAGTTCTCCAC
1 CACGAACTCTCAATGAACAAGTTATCCAC
80971686 C
1 C
80971687 TCTTCCATGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.27, G:0.10, T:0.27
Consensus pattern (29 bp):
CACGAACTCTCAATGAACAAGTTATCCAC
Found at i:80978818 original size:13 final size:13
Alignment explanation
Indices: 80978800--80978825 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80978790 AAGAAAAGAG
80978800 AAAGAAAAATAAA
1 AAAGAAAAATAAA
80978813 AAAGAAAAATAAA
1 AAAGAAAAATAAA
80978826 GAACACATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (13 bp):
AAAGAAAAATAAA
Found at i:80989176 original size:19 final size:20
Alignment explanation
Indices: 80989152--80989189 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
80989142 GGTACCACCA
80989152 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
80989171 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
80989190 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:80989485 original size:46 final size:47
Alignment explanation
Indices: 80989418--80989583 Score: 164
Period size: 46 Copynumber: 3.6 Consensus size: 47
80989408 CGCCCCTAAG
*
80989418 TGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCAGGACGTTCGCATCCATAAA
* * *
80989464 TGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCAG--GAC--GTTCGCATCCATAAA
* * * **
80989511 CGAACTTGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAGG
1 TGAACTCGGACTCAACTCAACGAGTTCAGGACGTTCGCATCCATAAA
*
80989557 TGAACTCGGACTCAACTCAATGAGTTC
1 TGAACTCGGACTCAACTCAACGAGTTC
80989584 GGATGCTCAA
Statistics
Matches: 98, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 3 0.03
45 1 0.01
46 53 0.54
47 26 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (47 bp):
TGAACTCGGACTCAACTCAACGAGTTCAGGACGTTCGCATCCATAAA
Done.