Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 259 of 325
Found at i:80989547 original size:93 final size:93
Alignment explanation
Indices: 80989419--80989589 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
80989409 GCCCCTAAGT
*
80989419 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
80989484 CGAGTTCAGATGCCTAGTTACATCTCAC
66 CGAGTTCAGATGCCTAGTTACATCTCAC
* * **
80989512 GAACTTGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAGGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAATGAACTCGGACTCAACTCA
* *
80989576 ATGAGTTCGGATGC
65 ACGAGTTCAGATGC
80989590 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:80990042 original size:30 final size:30
Alignment explanation
Indices: 80990008--80990067 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
80989998 ATTTAATACG
*
80990008 AACTTTAAAAAAATTACACTTTTTCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
80990038 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
80990068 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:80991885 original size:17 final size:19
Alignment explanation
Indices: 80991843--80991886 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
80991833 ATGAAATTTT
*
80991843 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
80991862 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
80991880 AA-TATTA
1 AATTATTA
80991887 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:80993753 original size:27 final size:28
Alignment explanation
Indices: 80993676--80993744 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
80993666 GCGTAGATCA
*
80993676 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
80993704 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
80993732 CGATA-TACCCCTA
1 CGAAATTACCCCTA
80993745 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:80996146 original size:17 final size:19
Alignment explanation
Indices: 80996104--80996147 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
80996094 ATGAAATTTT
*
80996104 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
80996123 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
80996141 AA-TATTA
1 AATTATTA
80996148 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:80998014 original size:27 final size:28
Alignment explanation
Indices: 80997937--80998005 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
80997927 GCGTAGATCA
*
80997937 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
80997965 CGAAATTACCCCTAAAGAGTAAAATTAC
1 CGAAATTACCCCTAAAGAGTAAAATTAC
*
80997993 CGATA-TACCCCTA
1 CGAAATTACCCCTA
80998006 GGGTTTAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 8 0.21
28 31 0.79
ACGTcount: A:0.43, C:0.26, G:0.10, T:0.20
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGTAAAATTAC
Found at i:81005002 original size:17 final size:18
Alignment explanation
Indices: 81004975--81005008 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81004965 AATTAAATAT
81004975 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
81004993 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
81005009 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:81005105 original size:17 final size:17
Alignment explanation
Indices: 81005063--81005108 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 17
81005053 AAAATTGATA
81005063 ATAATTAATATATGAATT
1 ATAATTAA-ATATGAATT
81005081 ATAA-TAAATAT-AATT
1 ATAATTAAATATGAATT
81005096 ATATATTAAATAT
1 ATA-ATTAAATAT
81005109 TATCATCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 7 0.27
16 5 0.19
17 10 0.38
18 4 0.15
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
ATAATTAAATATGAATT
Found at i:81010897 original size:52 final size:52
Alignment explanation
Indices: 81010819--81010948 Score: 235
Period size: 52 Copynumber: 2.5 Consensus size: 52
81010809 ACCAAATTGA
*
81010819 CACGGCCGTGT-GGTCTGCCCGTGTGAATCGTGCTTCAATTCTGCCAAGTTAG
1 CACGGCGGTGTGGGT-TGCCCGTGTGAATCGTGCTTCAATTCTGCCAAGTTAG
81010871 CACGGCGGTGTGGGTTGCCCGTGTGAATCGTGCTTCAATTCTGCCAAGTTAG
1 CACGGCGGTGTGGGTTGCCCGTGTGAATCGTGCTTCAATTCTGCCAAGTTAG
81010923 CACGGCGGTGTGGGTTGCCCGTGTGA
1 CACGGCGGTGTGGGTTGCCCGTGTGA
81010949 GAAAGTCCAG
Statistics
Matches: 76, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
52 73 0.96
53 3 0.04
ACGTcount: A:0.14, C:0.25, G:0.34, T:0.28
Consensus pattern (52 bp):
CACGGCGGTGTGGGTTGCCCGTGTGAATCGTGCTTCAATTCTGCCAAGTTAG
Found at i:81053277 original size:40 final size:39
Alignment explanation
Indices: 81053219--81053410 Score: 224
Period size: 39 Copynumber: 4.9 Consensus size: 39
81053209 GTTCAAAACA
* * ** * *
81053219 CCTTCGGGACATAGCCCGGTTATGGTAACCCGCACAAATG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
* *
81053259 CCTTCGGGACTTAACCCGGATATCACAACTCGCACAATTG
1 CCTTCGGG-CTTAGCCCGGATATCATAACTCGCACAATTG
*
81053299 CCTTCGGGCTTAGCCCGGATATCATAGCTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
81053338 CCTTCGGGCTTAGCCCAGATATCACAATTCGCACAATTG
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
* * *
81053377 CCTTC-GGCTTAGCCCGGTTATCACAATTCGCACA
1 CCTTCGGGCTTAGCCCGGATATCATAACTCGCACA
81053411 TTCATTCACA
Statistics
Matches: 135, Mismatches: 17, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 27 0.20
39 68 0.50
40 40 0.30
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (39 bp):
CCTTCGGGCTTAGCCCGGATATCATAACTCGCACAATTG
Found at i:81053399 original size:38 final size:39
Alignment explanation
Indices: 81053249--81053410 Score: 236
Period size: 39 Copynumber: 4.2 Consensus size: 39
81053239 TATGGTAACC
* *
81053249 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
81053289 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
81053328 CGCACAATTGCCTTCGGGCTTAGCCCAGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
81053367 CGCACAATTGCCTTC-GGCTTAGCCCGGTTATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
81053405 CGCACA
1 CGCACA
81053411 TTCATTCACA
Statistics
Matches: 112, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 27 0.24
39 68 0.61
40 17 0.15
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:81054688 original size:8 final size:9
Alignment explanation
Indices: 81054667--81054692 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
81054657 TGAACAAATT
81054667 TTTTTCTTG
1 TTTTTCTTG
81054676 TTTTTCTTG
1 TTTTTCTTG
81054685 TTTTTCTT
1 TTTTTCTT
81054693 TCACATACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.81
Consensus pattern (9 bp):
TTTTTCTTG
Found at i:81061437 original size:39 final size:39
Alignment explanation
Indices: 81061352--81061514 Score: 245
Period size: 39 Copynumber: 4.2 Consensus size: 39
81061342 TATGGTAACC
* * *
81061352 CGCACAAATACCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* *
81061392 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
81061431 CACACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
*
81061470 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
81061509 CGCACA
1 CGCACA
81061515 TTCATTCACA
Statistics
Matches: 113, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 97 0.86
40 16 0.14
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:81062795 original size:8 final size:9
Alignment explanation
Indices: 81062774--81062799 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
81062764 TGAACAAATT
81062774 TTTTTCTTG
1 TTTTTCTTG
81062783 TTTTTCTTG
1 TTTTTCTTG
81062792 TTTTTCTT
1 TTTTTCTT
81062800 TCACATACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.81
Consensus pattern (9 bp):
TTTTTCTTG
Found at i:81064825 original size:16 final size:16
Alignment explanation
Indices: 81064804--81064835 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81064794 TCAAATGGTA
81064804 CCATTTTTAATACAAG
1 CCATTTTTAATACAAG
81064820 CCATTTTTAATACAAG
1 CCATTTTTAATACAAG
81064836 ACTAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
CCATTTTTAATACAAG
Found at i:81072216 original size:13 final size:13
Alignment explanation
Indices: 81072198--81072222 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81072188 AACCATCACA
81072198 TATTCATTTCAAG
1 TATTCATTTCAAG
81072211 TATTCATTTCAA
1 TATTCATTTCAA
81072223 ATGTCTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.04, T:0.48
Consensus pattern (13 bp):
TATTCATTTCAAG
Found at i:81079075 original size:39 final size:40
Alignment explanation
Indices: 81079018--81079238 Score: 317
Period size: 39 Copynumber: 5.6 Consensus size: 40
81079008 GATTGATACT
*
81079018 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
81079058 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTGACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
* *
81079097 CGGGCTAAG-CCCGAAGGAATTTGTGCGAGTGACAAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
* * *
81079136 CGGGCTAAG-CTCGAAGGCATTTGTGCGAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TC
* *
81079175 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TC
81079215 CGGGCTAAGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
81079239 AGCTAGTAGC
Statistics
Matches: 170, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 2 0.01
39 106 0.62
40 62 0.36
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTC
Found at i:81079271 original size:39 final size:41
Alignment explanation
Indices: 81079029--81079271 Score: 242
Period size: 39 Copynumber: 6.2 Consensus size: 41
81079019 GGGCTAAGTC
* *
81079029 CCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGC-
1 CCGAAGGCATTTGTGCGAGTGACTATATTCCGGGCTAAACT
*
81079068 CCGAAGGCATTTGTGCGAGTGACTA-ATTCCGGGCTAAGC-
1 CCGAAGGCATTTGTGCGAGTGACTATATTCCGGGCTAAACT
* * *
81079107 CCGAAGGAATTTGTGCGAGTGAC-AAATTCCGGGCTAAGCT
1 CCGAAGGCATTTGTGCGAGTGACTATATTCCGGGCTAAACT
* * *
81079147 -CGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCT-AAGT
1 CCGAAGGCATTTGTGCGAGTGACTATATTCCGGGCTAAACT
* * *
81079185 CCCGAAGGCATTTGTGCGAGTTACTATA-ACCGGGCT-AAGT
1 -CCGAAGGCATTTGTGCGAGTGACTATATTCCGGGCTAAACT
* *
81079225 CCCGAAGGCATTTGAGCTAGT-AGCTATA-TCC-GGCTAAACT
1 -CCGAAGGCATTTGTGCGAGTGA-CTATATTCCGGGCTAAACT
81079265 CCGAAGG
1 CCGAAGG
81079272 TACTTGGTTT
Statistics
Matches: 185, Mismatches: 12, Indels: 14
0.88 0.06 0.07
Matches are distributed among these distances:
38 3 0.02
39 113 0.61
40 69 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (41 bp):
CCGAAGGCATTTGTGCGAGTGACTATATTCCGGGCTAAACT
Found at i:81083040 original size:6 final size:6
Alignment explanation
Indices: 81083029--81083069 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
81083019 GATGTATCTA
81083029 TCTTTT TCTTTT TCTTTT TCTTTT TC-TTT T-TTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT T
81083070 GTATATGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
5 8 0.24
6 25 0.76
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TCTTTT
Found at i:81083052 original size:18 final size:16
Alignment explanation
Indices: 81083029--81083069 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 16
81083019 GATGTATCTA
81083029 TCTTTTTCTTTTTCTTTT
1 TCTTTTTC-TTTT-TTTT
81083047 TCTTTTTCTTTTTTTT
1 TCTTTTTCTTTTTTTT
81083063 TCTTTTT
1 TCTTTTT
81083070 GTATATGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 11 0.48
17 4 0.17
18 8 0.35
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
TCTTTTTCTTTTTTTT
Found at i:81092211 original size:13 final size:13
Alignment explanation
Indices: 81092193--81092218 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81092183 AATGACTAAA
81092193 TATGATTTAAAAT
1 TATGATTTAAAAT
81092206 TATGATTTAAAAT
1 TATGATTTAAAAT
81092219 GGTACTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TATGATTTAAAAT
Found at i:81104361 original size:16 final size:16
Alignment explanation
Indices: 81104340--81104370 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
81104330 ATAACACCGA
81104340 CACATAGTCCCTGATT
1 CACATAGTCCCTGATT
81104356 CACATAGTCCCTGAT
1 CACATAGTCCCTGAT
81104371 ACAACATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (16 bp):
CACATAGTCCCTGATT
Found at i:81104456 original size:29 final size:29
Alignment explanation
Indices: 81104416--81104490 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
81104406 TAGTATTGGT
*
81104416 ACATAGTACCTGATAATATAAACACC-AGC
1 ACATAGTGCCTGATAATATAAACACCGA-C
81104445 ACATAGTGCCTGATAATATAAACACCGAC
1 ACATAGTGCCTGATAATATAAACACCGAC
81104474 ACATAGTGCCTGATAAT
1 ACATAGTGCCTGATAAT
81104491 CCCTAATGAC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
29 43 0.98
30 1 0.02
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.23
Consensus pattern (29 bp):
ACATAGTGCCTGATAATATAAACACCGAC
Found at i:81104664 original size:17 final size:18
Alignment explanation
Indices: 81104626--81104673 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
81104616 TCCATACTTT
81104626 TCAATTCAATCCATTAATC
1 TCAATTCAAT-CATTAATC
*
81104645 TCAATTCAAT-ATTTATC
1 TCAATTCAATCATTAATC
*
81104662 TC-ATACAATCAT
1 TCAATTCAATCAT
81104674 ACCAACACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 6 0.23
17 10 0.38
19 10 0.38
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (18 bp):
TCAATTCAATCATTAATC
Found at i:81106550 original size:19 final size:20
Alignment explanation
Indices: 81106489--81106550 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 20
81106479 TCTAACAAAC
*
81106489 TTTT-AAAATAATTA-AAGA
1 TTTTCAAAATAATTATAAAA
* *
81106507 TTTTAAAAATAATTTTAAAA
1 TTTTCAAAATAATTATAAAA
*
81106527 -GTTCAAAA-AATTATAAAA
1 TTTTCAAAATAATTATAAAA
81106545 TTTTCA
1 TTTTCA
81106551 TTAATTAATA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 13 0.37
19 19 0.54
20 3 0.09
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (20 bp):
TTTTCAAAATAATTATAAAA
Found at i:81106807 original size:91 final size:89
Alignment explanation
Indices: 81106620--81106843 Score: 272
Period size: 91 Copynumber: 2.5 Consensus size: 89
81106610 CAAACTTTAA
* * * *
81106620 AAAAAAAAAAGCAATTAAGCCCCTACTTTTATTTGCACTCAATTGGGTATTTGAACTTTCAAAAT
1 AAAAAAAAAAGCAATTAAGCCCTTACTTTT-TTTTCACTCAATTGGGTACTTGAACTATCAAAAT
* *
81106685 GCATCAAAATTGCCCTCAAACATTT
65 GCATCAAAATAGCCCTCAAAAATTT
*
81106710 AAAAAAAAGAAGCAATTAAGCCCTTACTTCTTTTTTAACTCAATTGGGTACTTGAACTATCAAAA
1 AAAAAAAA-AAGCAATTAAGCCCTTACTT-TTTTTTCACTCAATTGGGTACTTGAACTATCAAAA
* *
81106775 TGTATCAAAA-AGACCCTTAAAAATTT
64 TGCATCAAAATAG-CCCTCAAAAATTT
** * *
81106801 -TCAAAAAAAGCAATTAATCCTTTACTTTTTTTTCCACTCAATT
1 AAAAAAAAAAGCAATTAAGCCCTTACTTTTTTTT-CACTCAATT
81106844 ACAATATGCA
Statistics
Matches: 116, Mismatches: 14, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
88 6 0.05
89 26 0.22
90 14 0.12
91 68 0.59
92 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.33
Consensus pattern (89 bp):
AAAAAAAAAAGCAATTAAGCCCTTACTTTTTTTTCACTCAATTGGGTACTTGAACTATCAAAATG
CATCAAAATAGCCCTCAAAAATTT
Found at i:81107004 original size:9 final size:9
Alignment explanation
Indices: 81106967--81107121 Score: 55
Period size: 9 Copynumber: 16.4 Consensus size: 9
81106957 CATGTGACAA
81106967 AAAAATTAT
1 AAAAATTAT
*
81106976 AAAAAATA-
1 AAAAATTAT
*
81106984 AAAAATCAAT
1 AAAAAT-TAT
*
81106994 AAAAGTTAT
1 AAAAATTAT
81107003 AAAAATTATT
1 AAAAATTA-T
*
81107013 AAAATTTAAT
1 AAAAATT-AT
81107023 AAAAA-TATT
1 AAAAATTA-T
* * *
81107032 TAAATTTCACC
1 AAAAATT-A-T
*
81107043 AAAAATTAG
1 AAAAATTAT
*
81107052 AAAAAATAT
1 AAAAATTAT
* *
81107061 AAATAGTA-
1 AAAAATTAT
* *
81107069 AAAAGTTGT
1 AAAAATTAT
*
81107078 AAAAAGTTGT
1 AAAAA-TTAT
81107088 AAAAATTTTAT
1 AAAAA--TTAT
**
81107099 AAAAAGAAT
1 AAAAATTAT
81107108 AAAAAATTAT
1 -AAAAATTAT
81107118 AAAA
1 AAAA
81107122 TGAATCAAAA
Statistics
Matches: 105, Mismatches: 30, Indels: 22
0.67 0.19 0.14
Matches are distributed among these distances:
8 10 0.10
9 45 0.43
10 35 0.33
11 15 0.14
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:81107006 original size:19 final size:20
Alignment explanation
Indices: 81106984--81107028 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
81106974 ATAAAAAATA
81106984 AAAAATCAATAAAAGTT-AT
1 AAAAATCAATAAAAGTTAAT
* * *
81107003 AAAAATTATTAAAATTTAAT
1 AAAAATCAATAAAAGTTAAT
81107023 AAAAAT
1 AAAAAT
81107029 ATTTAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (20 bp):
AAAAATCAATAAAAGTTAAT
Found at i:81107031 original size:19 final size:20
Alignment explanation
Indices: 81107001--81107038 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
81106991 AATAAAAGTT
81107001 ATAAAAATTATTAAAATTTA
1 ATAAAAATTATTAAAATTTA
*
81107021 ATAAAAA-TATTTAAATTT
1 ATAAAAATTATTAAAATTT
81107039 CACCAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAAAAATTATTAAAATTTA
Found at i:81107092 original size:11 final size:10
Alignment explanation
Indices: 81107066--81107092 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
81107056 AATATAAATA
81107066 GTAAAAAGTT
1 GTAAAAAGTT
81107076 GTAAAAAGTT
1 GTAAAAAGTT
81107086 GTAAAAA
1 GTAAAAA
81107093 TTTTATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.56, C:0.00, G:0.19, T:0.26
Consensus pattern (10 bp):
GTAAAAAGTT
Found at i:81107117 original size:19 final size:20
Alignment explanation
Indices: 81107095--81107132 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
81107085 TGTAAAAATT
81107095 TTATAAAAAGAAT-AAAAAA
1 TTATAAAAAGAATCAAAAAA
*
81107114 TTATAAAATGAATCAAAAA
1 TTATAAAAAGAATCAAAAA
81107133 GACCCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (20 bp):
TTATAAAAAGAATCAAAAAA
Found at i:81107327 original size:8 final size:9
Alignment explanation
Indices: 81107304--81107494 Score: 68
Period size: 9 Copynumber: 20.2 Consensus size: 9
81107294 TTTTGGTATG
81107304 ATAATTTTT
1 ATAATTTTT
81107313 ATAATTTTT
1 ATAATTTTT
*
81107322 ATATTTTTTT
1 ATA-ATTTTT
*
81107332 ATCA-TTTT
1 ATAATTTTT
* *
81107340 CTAATGACTTT
1 ATAAT--TTTT
*
81107351 ATAAAATTTT
1 AT-AATTTTT
81107361 ATATATTTTT
1 ATA-ATTTTT
* *
81107371 CTATATTTCT
1 ATA-ATTTTT
81107381 AT-ATATTTT
1 ATAAT-TTTT
*
81107390 ATCATTTTT
1 ATAATTTTT
*
81107399 ACAA-TTTT
1 ATAATTTTT
81107407 ATAATATTTTT
1 AT-A-ATTTTT
*
81107418 CTAATTTTT
1 ATAATTTTT
***
81107427 AATAAAAATT
1 -ATAATTTTT
81107437 A-AATATTTT
1 ATAAT-TTTT
*
81107446 -TTATTTTT
1 ATAATTTTT
* *
81107454 ATTAAAATTTC
1 A-T-AATTTTT
81107465 ATAATTTTT
1 ATAATTTTT
81107474 ATAATTTTT
1 ATAATTTTT
*
81107483 ATTGATTTTT
1 A-TAATTTTT
81107493 AT
1 AT
81107495 TTTTTATCTG
Statistics
Matches: 132, Mismatches: 32, Indels: 36
0.66 0.16 0.18
Matches are distributed among these distances:
8 19 0.14
9 52 0.39
10 45 0.34
11 14 0.11
12 2 0.02
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (9 bp):
ATAATTTTT
Found at i:81107391 original size:39 final size:40
Alignment explanation
Indices: 81107307--81107391 Score: 97
Period size: 39 Copynumber: 2.2 Consensus size: 40
81107297 TGGTATGATA
* *
81107307 ATTTT-TATAATTTTTATATTTTTTTATCATTTTCTAATG
1 ATTTTATAAAATTTTTATATTTTTCTATCATTTTCTAATG
*
81107346 ACTTTATAAAATTTTATATATTTTTCTAT-A-TTTCTATAT-
1 ATTTTATAAAATTTT-TATATTTTTCTATCATTTTCTA-ATG
81107385 ATTTTAT
1 ATTTTAT
81107392 CATTTTTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
39 16 0.41
40 11 0.28
41 12 0.31
ACGTcount: A:0.29, C:0.06, G:0.01, T:0.64
Consensus pattern (40 bp):
ATTTTATAAAATTTTTATATTTTTCTATCATTTTCTAATG
Found at i:81107460 original size:26 final size:28
Alignment explanation
Indices: 81107409--81107485 Score: 86
Period size: 29 Copynumber: 2.8 Consensus size: 28
81107399 ACAATTTTAT
* *
81107409 AATATTTTTCTAATTTTTAATAAAAATTA
1 AATATTTTTATAATTTTT-ATTAAAATTA
*
81107438 AATATTTTT-T-ATTTTTATTAAAATTT
1 AATATTTTTATAATTTTTATTAAAATTA
*
81107464 CATAATTTTTATAATTTTTATT
1 AAT-ATTTTTATAATTTTTATT
81107486 GATTTTTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
26 10 0.24
27 12 0.29
28 2 0.05
29 18 0.43
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (28 bp):
AATATTTTTATAATTTTTATTAAAATTA
Found at i:81107749 original size:90 final size:91
Alignment explanation
Indices: 81107643--81107828 Score: 247
Period size: 91 Copynumber: 2.1 Consensus size: 91
81107633 AATTGAGTGT
* *
81107643 AAAAAAGAGCAGGGGCTTAATTGC-TTTTTCGAAAAAGTTTGAGTGCAT-TTTTGA-TACATTTT
1 AAAAAAGAGCAAGGGCTTAATTGCTTTTTTCGAAAAAGTTTGAGGGCATCTTTT-ATTA-ATTTT
** *
81107705 GGTAGTTCAAGTA-CATAATTGAGTGCAAA
64 GAAAGTTCAAGTATC-CAATTGAGTG-AAA
*
81107734 AAAAAAG-GCAAGGGCTTAATTGCTTTTTTTGAAAAAGTTTGAGGGCATCTTTTATTAATTTTGA
1 AAAAAAGAGCAAGGGCTTAATTGCTTTTTTCGAAAAAGTTTGAGGGCATCTTTTATTAATTTTGA
81107798 AAGTTCAAGTATCCAATTGAGTGAAA
66 AAGTTCAAGTATCCAATTGAGTGAAA
81107824 AAAAA
1 AAAAA
81107829 CTAAAGGCTT
Statistics
Matches: 85, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
90 23 0.27
91 55 0.65
92 7 0.08
ACGTcount: A:0.37, C:0.09, G:0.20, T:0.34
Consensus pattern (91 bp):
AAAAAAGAGCAAGGGCTTAATTGCTTTTTTCGAAAAAGTTTGAGGGCATCTTTTATTAATTTTGA
AAGTTCAAGTATCCAATTGAGTGAAA
Found at i:81109768 original size:18 final size:20
Alignment explanation
Indices: 81109724--81109769 Score: 51
Period size: 22 Copynumber: 2.3 Consensus size: 20
81109714 GATATTGTGC
81109724 TGATACTTATTATATGTAGTA
1 TGATACTTATTATATGTAG-A
*
81109745 TCGATACTTATTTTA-GTAG-
1 T-GATACTTATTATATGTAGA
81109764 TGATAC
1 TGATAC
81109770 CAATTTACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 5 0.22
19 1 0.04
21 5 0.22
22 12 0.52
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.46
Consensus pattern (20 bp):
TGATACTTATTATATGTAGA
Found at i:81112736 original size:40 final size:40
Alignment explanation
Indices: 81112692--81112875 Score: 289
Period size: 40 Copynumber: 4.5 Consensus size: 40
81112682 CGAATTATCG
* *
81112692 CACACTAAGTGCCAAAACATAGCCGAAGCTAT-TTTAACCTCA
1 CACACTAAGTGCC-ATACATAGCCGAAGCTATCTTGAA--TCA
81112734 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCA
* *
81112774 CACACTAGGTGCCATACATAGCCCAAGCTATCTTGAATCA
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCA
*
81112814 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCG
1 CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCA
81112854 CACACTAAGTGCCATACATAGC
1 CACACTAAGTGCCATACATAGC
81112876 TGAATTGTCG
Statistics
Matches: 134, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
40 100 0.75
41 17 0.13
42 17 0.13
ACGTcount: A:0.35, C:0.29, G:0.15, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCCGAAGCTATCTTGAATCA
Found at i:81118645 original size:40 final size:40
Alignment explanation
Indices: 81118518--81118647 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
81118508 ATGCTGGAAA
* * * *
81118518 TTATATCCAGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * **
81118558 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
81118598 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
81118638 TTATATCCGG
1 TTATATCCGG
81118648 TTATATTCCG
Statistics
Matches: 73, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 1 0.01
40 72 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:81121150 original size:18 final size:18
Alignment explanation
Indices: 81121127--81121171 Score: 74
Period size: 18 Copynumber: 2.5 Consensus size: 18
81121117 TTTCTCGTTA
81121127 CTTTGCTAAG-TTCATCGG
1 CTTTGC-AAGATTCATCGG
81121145 CTTTGCAAGATTCATCGG
1 CTTTGCAAGATTCATCGG
81121163 CTTTGCAAG
1 CTTTGCAAG
81121172 CTCTATTGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 3 0.12
18 23 0.88
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (18 bp):
CTTTGCAAGATTCATCGG
Found at i:81124412 original size:25 final size:25
Alignment explanation
Indices: 81124384--81124431 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
81124374 TTATACCATG
* *
81124384 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
81124409 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
81124432 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:81124500 original size:20 final size:20
Alignment explanation
Indices: 81124475--81124533 Score: 109
Period size: 20 Copynumber: 3.0 Consensus size: 20
81124465 TAAATATGGT
81124475 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
*
81124495 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACATGAA
81124515 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
81124534 GGTAATCATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:81124515 original size:11 final size:11
Alignment explanation
Indices: 81124479--81124533 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
81124469 TATGGTATGT
81124479 ATGATATGCAC
1 ATGATATGCAC
* *
81124490 ATGAAATG--T
1 ATGATATGCAC
81124499 ATGATATGCAC
1 ATGATATGCAC
*
81124510 ATGATATG--T
1 ATGATATGCAC
81124519 ATGATATGCAC
1 ATGATATGCAC
81124530 ATGA
1 ATGA
81124534 GGTAATCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:81124611 original size:24 final size:24
Alignment explanation
Indices: 81124584--81124688 Score: 158
Period size: 24 Copynumber: 4.4 Consensus size: 24
81124574 GAGGAAGTGA
*
81124584 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
81124608 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
*
81124631 AAAAGGGCTTATGCCCCAGTTGTT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
81124655 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
81124679 AAAAGAGGCT
1 AAAAG-GGCT
81124689 AGGCCTCTAG
Statistics
Matches: 73, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
23 21 0.29
24 48 0.66
25 4 0.05
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:81124660 original size:47 final size:48
Alignment explanation
Indices: 81124584--81124688 Score: 158
Period size: 47 Copynumber: 2.2 Consensus size: 48
81124574 GAGGAAGTGA
81124584 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
* ** *
81124631 AAAAGGGCTTATGCCCCAGTTGTTGAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
81124679 AAAAGAGGCT
1 AAAAG-GGCT
81124689 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 42 0.81
48 6 0.12
49 4 0.08
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (48 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATT
Found at i:81124929 original size:31 final size:31
Alignment explanation
Indices: 81124894--81124957 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
81124884 CATTTACAGT
*
81124894 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
81124925 AAAGGCTTCGGCCCAGTGTTATGGAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
81124956 AA
1 AA
81124958 CATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:81126685 original size:40 final size:40
Alignment explanation
Indices: 81126634--81126739 Score: 185
Period size: 40 Copynumber: 2.6 Consensus size: 40
81126624 TGTTTTAACC
*
81126634 TCGCACACTAGGTGCCATACATAGCCGAAGCTATCTTGAA
1 TCGCACACTAGGTGCCATACATAGCCCAAGCTATCTTGAA
*
81126674 TCGCACACTAGGTGTCATACATAGCCCAAGCTATCTTGAA
1 TCGCACACTAGGTGCCATACATAGCCCAAGCTATCTTGAA
*
81126714 TCGCACACTAAGTGCCATACATAGCC
1 TCGCACACTAGGTGCCATACATAGCC
81126740 AATTTGTCGT
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (40 bp):
TCGCACACTAGGTGCCATACATAGCCCAAGCTATCTTGAA
Found at i:81138534 original size:25 final size:25
Alignment explanation
Indices: 81138466--81138597 Score: 99
Period size: 25 Copynumber: 5.3 Consensus size: 25
81138456 TCCTGTACAT
81138466 GTATGCTCAT-ACGAGCTGT-GAATCG
1 GTATGCTC-TCACGAGCTGTAG-ATCG
* * * * *
81138491 ATATGCTCACTCAAACTGTAGATCG
1 GTATGCTCTCACGAGCTGTAGATCG
* *
81138516 GTATGCTCTCACGAGCTGTA-AACA
1 GTATGCTCTCACGAGCTGTAGATCG
* * * *
81138540 GTATGCTCACATGAGTTGTAGATCA
1 GTATGCTCTCACGAGCTGTAGATCG
* * *
81138565 GTATGCTCTCATGAGCTGTAAATTG
1 GTATGCTCTCACGAGCTGTAGATCG
81138590 GTATGCTC
1 GTATGCTC
81138598 ACACAAGTTA
Statistics
Matches: 83, Mismatches: 21, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
24 19 0.23
25 63 0.76
26 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (25 bp):
GTATGCTCTCACGAGCTGTAGATCG
Found at i:81138642 original size:24 final size:24
Alignment explanation
Indices: 81138615--81138661 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
81138605 TTATGGGTTG
*
81138615 AAACATAGCTACACGATGCTACTT
1 AAACATAGCTACACAATGCTACTT
*
81138639 AAACGTAGCTACACAATGCTACT
1 AAACATAGCTACACAATGCTACT
81138662 CACACGAGCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.23
Consensus pattern (24 bp):
AAACATAGCTACACAATGCTACTT
Found at i:81140551 original size:21 final size:21
Alignment explanation
Indices: 81140509--81140558 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
81140499 CTAAATTAGA
*
81140509 AAAATATGTGGACAAGCTACC
1 AAAATATGTGGACAAGCCACC
*
81140530 AAAATATGTGGATATA-CCACC
1 AAAATATGTGGACA-AGCCACC
*
81140551 AGAATATG
1 AAAATATG
81140559 CAGATCATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (21 bp):
AAAATATGTGGACAAGCCACC
Found at i:81145103 original size:27 final size:25
Alignment explanation
Indices: 81145073--81145128 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
81145063 ATTTCTAGGT
81145073 AATTCACCACAAAAGCTTTTTTCAGAA
1 AATTCACCACAAAAGC--TTTTCAGAA
** *
81145100 AATTTGCCACAAAGGCTTTTCAGAA
1 AATTCACCACAAAAGCTTTTCAGAA
81145125 AATT
1 AATT
81145129 TGTCATAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 13 0.50
27 13 0.50
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (25 bp):
AATTCACCACAAAAGCTTTTCAGAA
Found at i:81145125 original size:25 final size:25
Alignment explanation
Indices: 81145091--81145139 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
81145081 ACAAAAGCTT
81145091 TTTTCAGAAAATTTGCCACAAAGGC
1 TTTTCAGAAAATTTGCCACAAAGGC
* *
81145116 TTTTCAGAAAATTTGTCATAAAGG
1 TTTTCAGAAAATTTGCCACAAAGG
81145140 TTTGGTTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (25 bp):
TTTTCAGAAAATTTGCCACAAAGGC
Found at i:81152178 original size:41 final size:41
Alignment explanation
Indices: 81152130--81152298 Score: 214
Period size: 41 Copynumber: 4.1 Consensus size: 41
81152120 GCCATGCTCG
* *
81152130 AAGCCTGACATAATACACCGGCACAAAACCTACTAGGTACA
1 AAGCCTGATATAATACACCGGCACAAAACCTACTAGGCACA
* * * *
81152171 AAACCTGATATAATACACCGACACGAAGA-CTACTAGGTACA
1 AAGCCTGATATAATACACCGGCAC-AAAACCTACTAGGCACA
* * * *
81152212 AAGCCTAATATAATACACCAGCACAAAGCCTGCTAGGCACA
1 AAGCCTGATATAATACACCGGCACAAAACCTACTAGGCACA
* *
81152253 AAGCCTGATATAATACACCGGCATAAAGCCTACTAGGCACA
1 AAGCCTGATATAATACACCGGCACAAAACCTACTAGGCACA
81152294 AAGCC
1 AAGCC
81152299 CAAATATCAC
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
40 2 0.02
41 105 0.95
42 3 0.03
ACGTcount: A:0.41, C:0.28, G:0.15, T:0.15
Consensus pattern (41 bp):
AAGCCTGATATAATACACCGGCACAAAACCTACTAGGCACA
Found at i:81152201 original size:82 final size:82
Alignment explanation
Indices: 81152113--81152272 Score: 205
Period size: 82 Copynumber: 2.0 Consensus size: 82
81152103 ACATTGGCAT
* * * * *
81152113 GAAGACTGCCATGCT-CGAAGCCTGACATAATACACCGGCACAAAACCTACTAGGTACAAAACCT
1 GAAGACTACCA-GCTACAAAGCCTAACATAATACACCAGCACAAAACCTACTAGGCACAAAACCT
81152177 GATATAATACACCGACAC
65 GATATAATACACCGACAC
* * * * * *
81152195 GAAGACTACTAGGTACAAAGCCTAATATAATACACCAGCACAAAGCCTGCTAGGCACAAAGCCTG
1 GAAGACTACCAGCTACAAAGCCTAACATAATACACCAGCACAAAACCTACTAGGCACAAAACCTG
81152260 ATATAATACACCG
66 ATATAATACACCG
81152273 GCATAAAGCC
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
81 2 0.03
82 64 0.97
ACGTcount: A:0.40, C:0.28, G:0.16, T:0.16
Consensus pattern (82 bp):
GAAGACTACCAGCTACAAAGCCTAACATAATACACCAGCACAAAACCTACTAGGCACAAAACCTG
ATATAATACACCGACAC
Found at i:81152286 original size:82 final size:80
Alignment explanation
Indices: 81152130--81152321 Score: 226
Period size: 82 Copynumber: 2.4 Consensus size: 80
81152120 GCCATGCTCG
* * *
81152130 AAGCCTGACATAATACACCGGCACAAAACCTACTAGGTACAAAACCTGATATAATACACCGACAC
1 AAGCCT-AAATAATACACC-GCACAAAGCCTACTAGGCACAAAACCTGATATAATACACCGACAC
* *
81152195 GAAGACTACTAGGTACA
64 AAAGACTACTAGGCACA
* * * *
81152212 AAGCCTAATATAATACACCAGCACAAAGCCTGCTAGGCACAAAGCCTGATATAATACACCGGCAT
1 AAGCCTAA-ATAATACACC-GCACAAAGCCTACTAGGCACAAAACCTGATATAATACACCGACAC
*
81152277 AAAGCCTACTAGGCACA
64 AAAGACTACTAGGCACA
*
81152294 AAGCCCAAAT-AT-CACCGACACAAAGCCT
1 AAGCCTAAATAATACACCG-CACAAAGCCT
81152322 TTTAGGCATG
Statistics
Matches: 96, Mismatches: 12, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 14 0.15
80 2 0.02
81 3 0.03
82 76 0.79
ACGTcount: A:0.42, C:0.29, G:0.15, T:0.15
Consensus pattern (80 bp):
AAGCCTAAATAATACACCGCACAAAGCCTACTAGGCACAAAACCTGATATAATACACCGACACAA
AGACTACTAGGCACA
Found at i:81152346 original size:37 final size:36
Alignment explanation
Indices: 81152296--81152367 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 36
81152286 TAGGCACAAA
*
81152296 GCCCAAATATCACC-GACACAAAGCCTTTTAGGCATGG
1 GCCCAAATATCACCAG-CACAAAG-CTTCTAGGCATGG
81152333 GCCCAAATATCACCAGCACAAAGCTTCTAGGCATG
1 GCCCAAATATCACCAGCACAAAGCTTCTAGGCATG
81152368 AAGCCTGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
36 11 0.33
37 21 0.64
38 1 0.03
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (36 bp):
GCCCAAATATCACCAGCACAAAGCTTCTAGGCATGG
Found at i:81154147 original size:34 final size:34
Alignment explanation
Indices: 81154109--81154211 Score: 170
Period size: 34 Copynumber: 3.0 Consensus size: 34
81154099 CTTTTCTATG
81154109 TTGTTTTCCTGGAATTCAATAGATGGATTCATGA
1 TTGTTTTCCTGGAATTCAATAGATGGATTCATGA
*
81154143 TTGTTTTCCTGGAATTCAATAGATGGATTCATCA
1 TTGTTTTCCTGGAATTCAATAGATGGATTCATGA
* * *
81154177 TTGTTTTCCTAGAATTCAATAGATGAAGTCATGA
1 TTGTTTTCCTGGAATTCAATAGATGGATTCATGA
81154211 T
1 T
81154212 AGTATACCAA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 64 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (34 bp):
TTGTTTTCCTGGAATTCAATAGATGGATTCATGA
Found at i:81165057 original size:28 final size:28
Alignment explanation
Indices: 81165025--81165093 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81165015 GCGTAGATCA
81165025 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
81165053 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
81165081 CGATA-TACCCCTA
1 CGAAATTACCCCTA
81165094 GGGTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:81169757 original size:28 final size:28
Alignment explanation
Indices: 81169725--81169793 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81169715 GCGTAGATCA
81169725 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
81169753 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
81169781 CGATA-TACCCCTA
1 CGAAATTACCCCTA
81169794 GGGTTTAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:81174452 original size:28 final size:28
Alignment explanation
Indices: 81174420--81174488 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
81174410 GCGTAGATCA
81174420 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
81174448 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
*
81174476 CGATA-TACCCCTA
1 CGAAATTACCCCTA
81174489 GGGTTTTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 8 0.20
28 32 0.80
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.19
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:81178805 original size:18 final size:18
Alignment explanation
Indices: 81178779--81178818 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
81178769 CATATTCAGA
* *
81178779 TCCCTCTTCAGTCTCATC
1 TCCCACTTCAGTCTCAAC
*
81178797 TCCCACTTCATTCTCAAC
1 TCCCACTTCAGTCTCAAC
81178815 TCCC
1 TCCC
81178819 TCTCATTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.15, C:0.47, G:0.03, T:0.35
Consensus pattern (18 bp):
TCCCACTTCAGTCTCAAC
Found at i:81181751 original size:6 final size:6
Alignment explanation
Indices: 81181732--81181765 Score: 59
Period size: 6 Copynumber: 5.5 Consensus size: 6
81181722 TCTAAATGAA
81181732 TTCATT TCTCATT TTCATT TTCATT TTCATT TTC
1 TTCATT T-TCATT TTCATT TTCATT TTCATT TTC
81181766 GAGAAAACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 21 0.78
7 6 0.22
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.65
Consensus pattern (6 bp):
TTCATT
Found at i:81184144 original size:21 final size:20
Alignment explanation
Indices: 81184111--81184156 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
81184101 TATTTTATTT
81184111 TTTAAATATTTTACTATACTC
1 TTTAAATATTTTACTA-ACTC
*
81184132 TTTAAGATA-TTTATTAACTC
1 TTTAA-ATATTTTACTAACTC
81184152 TTTAA
1 TTTAA
81184157 TCCCAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 9 0.39
21 11 0.48
22 3 0.13
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (20 bp):
TTTAAATATTTTACTAACTC
Found at i:81184179 original size:24 final size:23
Alignment explanation
Indices: 81184145--81184198 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
81184135 AAGATATTTA
* *
81184145 TTAACTC--TTTAATCCCAATTT
1 TTAACTCTATTTAACCCCAACTT
81184166 TTAAACTCTATTTAACCCCAACTT
1 TT-AACTCTATTTAACCCCAACTT
81184190 TTAACTCTA
1 TTAACTCTA
81184199 CTTGTAGAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 2 0.07
22 5 0.18
23 7 0.25
24 14 0.50
ACGTcount: A:0.31, C:0.26, G:0.00, T:0.43
Consensus pattern (23 bp):
TTAACTCTATTTAACCCCAACTT
Found at i:81195815 original size:8 final size:8
Alignment explanation
Indices: 81195804--81195840 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
81195794 TATTTGATTA
81195804 TTTTTTCC
1 TTTTTTCC
81195812 -TTTTTCC
1 TTTTTTCC
*
81195819 TTTTTTTC
1 TTTTTTCC
81195827 TTTTTTCC
1 TTTTTTCC
81195835 TTTTTT
1 TTTTTT
81195841 TAATGCAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTTTTCC
Found at i:81195825 original size:16 final size:16
Alignment explanation
Indices: 81195804--81195841 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
81195794 TATTTGATTA
81195804 TTTTTTCCTTTTTCCT
1 TTTTTTCCTTTTTCCT
*
81195820 TTTTTTCTTTTTTCCT
1 TTTTTTCCTTTTTCCT
81195836 TTTTTT
1 TTTTTT
81195842 AATGCAACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTTCCTTTTTCCT
Found at i:81196185 original size:12 final size:12
Alignment explanation
Indices: 81196168--81196201 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
81196158 CAGCCAGCTC
81196168 ATATTAATTTTT
1 ATATTAATTTTT
*
81196180 ATATTATTTTTT
1 ATATTAATTTTT
81196192 ATA-TAATTTT
1 ATATTAATTTT
81196202 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:81196358 original size:30 final size:30
Alignment explanation
Indices: 81196322--81196384 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
81196312 CAACTTAACA
*
81196322 AACAAATACCTCTAAAATAATAACAAATTT
1 AACAAATACCTCTAAAATAATAACAAAATT
** *
81196352 AACAAATGTCTTTAAAATAATAACAAAATT
1 AACAAATACCTCTAAAATAATAACAAAATT
81196382 AAC
1 AAC
81196385 TTAATAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (30 bp):
AACAAATACCTCTAAAATAATAACAAAATT
Found at i:81196831 original size:13 final size:13
Alignment explanation
Indices: 81196815--81196845 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
81196805 GAATATTTGA
81196815 TTTTTAAAAATAT
1 TTTTTAAAAATAT
*
81196828 TTTTTAAATATAT
1 TTTTTAAAAATAT
81196841 TTTTT
1 TTTTT
81196846 TTAAAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTTTAAAAATAT
Found at i:81199449 original size:42 final size:42
Alignment explanation
Indices: 81199390--81199473 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
81199380 AATCCTAATT
81199390 GGGAAAACAGTTCCCTTATTCTAATAAACTACTAAAACATAA
1 GGGAAAACAGTTCCCTTATTCTAATAAACTACTAAAACATAA
* *
81199432 GGGAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAA
1 GGGAAAACAGTTCCCTTATTCTAATAAACTACTAAAACATAA
81199474 AATAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (42 bp):
GGGAAAACAGTTCCCTTATTCTAATAAACTACTAAAACATAA
Found at i:81204170 original size:19 final size:19
Alignment explanation
Indices: 81204148--81204193 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
81204138 TCCTAAAATA
81204148 TAAATAAAACTTATCTACC
1 TAAATAAAACTTATCTACC
* * *
81204167 TAAATAAGATTTATTTACC
1 TAAATAAAACTTATCTACC
81204186 TAAATAAA
1 TAAATAAA
81204194 TTTAAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAATAAAACTTATCTACC
Found at i:81204683 original size:17 final size:17
Alignment explanation
Indices: 81204656--81204698 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
81204646 GCACAAAACA
* *
81204656 CCTATACATTAAATATT
1 CCTAAACATTAAACATT
*
81204673 CTTAAACATTAAACATT
1 CCTAAACATTAAACATT
81204690 CCTAAACAT
1 CCTAAACAT
81204699 GTGCATACTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (17 bp):
CCTAAACATTAAACATT
Found at i:81205498 original size:24 final size:24
Alignment explanation
Indices: 81205470--81205517 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
81205460 CGCAAATGAG
*
81205470 TAAGTTCATTAATGTCGCATATAT
1 TAAGTTCATTAATGTCACATATAT
81205494 TAAGTTCATTAATGTCACATATAT
1 TAAGTTCATTAATGTCACATATAT
81205518 CTATCATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (24 bp):
TAAGTTCATTAATGTCACATATAT
Found at i:81206131 original size:40 final size:40
Alignment explanation
Indices: 81206077--81206189 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 40
81206067 TCGTCATATA
*
81206077 AACTG-AACACACCAAACAAAAGCTCATAAGAGCTGATCC
1 AACTGAAACACACCAAACAGAAGCTCATAAGAGCTGATCC
* * *
81206116 AACTGAAATACACCAAACAGAAGCTCATAGGAGCTGGTCC
1 AACTGAAACACACCAAACAGAAGCTCATAAGAGCTGATCC
* * *
81206156 ACCCGAAACACGCC-AACAGAAGCTCATAAGAGCT
1 AACTGAAACACACCAAACAGAAGCTCATAAGAGCT
81206190 AAACAGAAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 24 0.38
40 40 0.62
ACGTcount: A:0.42, C:0.28, G:0.17, T:0.12
Consensus pattern (40 bp):
AACTGAAACACACCAAACAGAAGCTCATAAGAGCTGATCC
Found at i:81207009 original size:10 final size:10
Alignment explanation
Indices: 81206994--81207023 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
81206984 TCAAAAGTAC
81206994 GAGCTAGTTG
1 GAGCTAGTTG
81207004 GAGCTAGTTG
1 GAGCTAGTTG
*
81207014 GACCTAGTTG
1 GAGCTAGTTG
81207024 CAACGATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.20, C:0.13, G:0.37, T:0.30
Consensus pattern (10 bp):
GAGCTAGTTG
Found at i:81215949 original size:24 final size:25
Alignment explanation
Indices: 81215910--81215956 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
81215900 AATAAAAAAT
* *
81215910 TTTAAAAATATAATAAATAAATACA
1 TTTAAAAACATAATAAACAAATACA
81215935 TTTAAAAACAT-ATAAACAAATA
1 TTTAAAAACATAATAAACAAATA
81215957 TTAAAATAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 10 0.50
25 10 0.50
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (25 bp):
TTTAAAAACATAATAAACAAATACA
Found at i:81216893 original size:11 final size:11
Alignment explanation
Indices: 81216877--81216991 Score: 63
Period size: 11 Copynumber: 10.4 Consensus size: 11
81216867 CCTAAGTATA
*
81216877 AAAACAATACC
1 AAAACAACACC
*
81216888 AAAACAACAAC
1 AAAACAACACC
81216899 AAAACAACACC
1 AAAACAACACC
* **
81216910 -AAACAGCATA
1 AAAACAACACC
*
81216920 AAAACAACACAA
1 AAAACAACAC-C
*
81216932 AAAACAGCACC
1 AAAACAACACC
* *
81216943 -AAACAGCACAA
1 AAAACAACAC-C
* *
81216954 AAAACAGCATC
1 AAAACAACACC
*
81216965 ACCAACAACACC
1 A-AAACAACACC
* *
81216977 AAAATAGCACC
1 AAAACAACACC
81216988 AAAA
1 AAAA
81216992 ACCTAAAAAA
Statistics
Matches: 80, Mismatches: 19, Indels: 10
0.73 0.17 0.09
Matches are distributed among these distances:
10 16 0.20
11 38 0.47
12 26 0.32
ACGTcount: A:0.63, C:0.30, G:0.04, T:0.03
Consensus pattern (11 bp):
AAAACAACACC
Found at i:81216923 original size:21 final size:22
Alignment explanation
Indices: 81216874--81216937 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 22
81216864 ATACCTAAGT
*
81216874 ATAAAAACAATACCAAAACAAC
1 ATAAAAACAACACCAAAACAAC
*
81216896 A-ACAAAACAACACC-AAACAGC
1 ATA-AAAACAACACCAAAACAAC
81216917 ATAAAAACAACA-CAAAA-AAC
1 ATAAAAACAACACCAAAACAAC
81216937 A
1 A
81216938 GCACCAAACA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
20 4 0.11
21 20 0.56
22 12 0.33
ACGTcount: A:0.69, C:0.25, G:0.02, T:0.05
Consensus pattern (22 bp):
ATAAAAACAACACCAAAACAAC
Found at i:81216936 original size:12 final size:12
Alignment explanation
Indices: 81216910--81216962 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 12
81216900 AAACAACACC
*
81216910 AAACAGCA-TAA
1 AAACAGCACAAA
*
81216921 AAACAACACAAA
1 AAACAGCACAAA
*
81216933 AAACAGCAC--C
1 AAACAGCACAAA
81216943 AAACAGCACAAA
1 AAACAGCACAAA
81216955 AAACAGCA
1 AAACAGCA
81216963 TCACCAACAA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
10 9 0.26
11 7 0.21
12 18 0.53
ACGTcount: A:0.64, C:0.26, G:0.08, T:0.02
Consensus pattern (12 bp):
AAACAGCACAAA
Found at i:81216943 original size:33 final size:32
Alignment explanation
Indices: 81216888--81216956 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 32
81216878 AAACAATACC
* *
81216888 AAAACAACAACAAAACAACACCAAACAGCATA
1 AAAACAACAAAAAAACAACACCAAACAGCACA
*
81216920 AAAACAACACAAAAAACAGCACCAAACAGCACA
1 AAAACAACA-AAAAAACAACACCAAACAGCACA
81216953 AAAA
1 AAAA
81216957 ACAGCATCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 9 0.27
33 24 0.73
ACGTcount: A:0.67, C:0.28, G:0.04, T:0.01
Consensus pattern (32 bp):
AAAACAACAAAAAAACAACACCAAACAGCACA
Found at i:81216952 original size:22 final size:22
Alignment explanation
Indices: 81216921--81217003 Score: 82
Period size: 22 Copynumber: 3.8 Consensus size: 22
81216911 AACAGCATAA
81216921 AAACAACACAAAAAACAGCACC
1 AAACAACACAAAAAACAGCACC
*
81216943 AAACAGCACAAAAAACAGCATCAC
1 AAACAACACAAAAAACAGCA-C-C
* * *
81216967 CAACAACAC-CAAAATAGCACC
1 AAACAACACAAAAAACAGCACC
81216988 AAA-AAC-CTAAAAAACA
1 AAACAACAC-AAAAAACA
81217004 TAATTAACCA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
19 1 0.02
20 3 0.06
21 8 0.16
22 20 0.41
23 9 0.18
24 8 0.16
ACGTcount: A:0.61, C:0.30, G:0.05, T:0.04
Consensus pattern (22 bp):
AAACAACACAAAAAACAGCACC
Found at i:81219868 original size:14 final size:15
Alignment explanation
Indices: 81219844--81219872 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
81219834 ACAATCGACA
81219844 GAACAAAAAGAAAAG
1 GAACAAAAAGAAAAG
81219859 GAAC-AAAAGAAAAG
1 GAACAAAAAGAAAAG
81219873 AGCTAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.72, C:0.07, G:0.21, T:0.00
Consensus pattern (15 bp):
GAACAAAAAGAAAAG
Found at i:81222542 original size:15 final size:16
Alignment explanation
Indices: 81222522--81222554 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
81222512 ATTGATATAT
81222522 ATATATATATTA-TGA
1 ATATATATATTATTGA
*
81222537 ATATATTTATTATTGA
1 ATATATATATTATTGA
81222553 AT
1 AT
81222555 TGAAATGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
ATATATATATTATTGA
Found at i:81222558 original size:21 final size:22
Alignment explanation
Indices: 81222507--81222558 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 22
81222497 GATTGAATGG
81222507 ATTGAATTGATATATATATATAT
1 ATTGAATTGA-ATATATATATAT
*
81222530 ATT--A-TGAATATATTTAT-T
1 ATTGAATTGAATATATATATAT
81222548 ATTGAATTGAA
1 ATTGAATTGAA
81222559 ATGAATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 4 0.16
21 5 0.20
23 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (22 bp):
ATTGAATTGAATATATATATAT
Found at i:81222756 original size:41 final size:40
Alignment explanation
Indices: 81222710--81222818 Score: 116
Period size: 37 Copynumber: 2.8 Consensus size: 40
81222700 GACTTCGAGT
**
81222710 CGATGAGACACTAGGTGTCAAATTATTACTTCGGATATATT
1 CGATGAGACACTAGGTGTCAAATTATTACTTCGG-TATAGC
* * * * *
81222751 GGATGAGGCACTGGGTG-CCAA-T-TTACTTCGGTTTAGC
1 CGATGAGACACTAGGTGTCAAATTATTACTTCGGTATAGC
*
81222788 CGATGAGACACTTGGTGTCAAATTATTACTT
1 CGATGAGACACTAGGTGTCAAATTATTACTT
81222819 TGAATTATTC
Statistics
Matches: 54, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
37 17 0.31
38 12 0.22
39 2 0.04
40 9 0.17
41 14 0.26
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (40 bp):
CGATGAGACACTAGGTGTCAAATTATTACTTCGGTATAGC
Found at i:81223959 original size:15 final size:15
Alignment explanation
Indices: 81223939--81223968 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81223929 TCTCCGGAGA
81223939 AAGAAAAATTGACGC
1 AAGAAAAATTGACGC
81223954 AAGAAAAATTGACGC
1 AAGAAAAATTGACGC
81223969 CTTTTCTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.20, T:0.13
Consensus pattern (15 bp):
AAGAAAAATTGACGC
Found at i:81224500 original size:13 final size:13
Alignment explanation
Indices: 81224482--81224506 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81224472 TTGGCCGTGC
81224482 ACGCATAACACGG
1 ACGCATAACACGG
81224495 ACGCATAACACG
1 ACGCATAACACG
81224507 ATAGTGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.32, G:0.20, T:0.08
Consensus pattern (13 bp):
ACGCATAACACGG
Found at i:81235252 original size:24 final size:23
Alignment explanation
Indices: 81235177--81235258 Score: 76
Period size: 24 Copynumber: 3.4 Consensus size: 23
81235167 AACAAAATAA
81235177 AGAAAGAAAAAGAAATAG-AAAGG
1 AGAAAGAAAAAGAAA-AGAAAAGG
* * *
81235200 TAGAAACGAAACAGAGAAGCAAAACG
1 -AGAAA-GAAAAAGAAAAG-AAAAGG
*
81235226 AGAAAAAAAAAGAAAAGAAAAAGG
1 AGAAAGAAAAAGAAAAG-AAAAGG
81235250 AGAAAGAAA
1 AGAAAGAAA
81235259 CAGACGAAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 29 0.63
25 13 0.28
26 4 0.09
ACGTcount: A:0.70, C:0.05, G:0.23, T:0.02
Consensus pattern (23 bp):
AGAAAGAAAAAGAAAAGAAAAGG
Found at i:81235982 original size:15 final size:16
Alignment explanation
Indices: 81235962--81235994 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
81235952 ATTGATATAT
81235962 ATATATATATTA-TGA
1 ATATATATATTATTGA
*
81235977 ATATATTTATTATTGA
1 ATATATATATTATTGA
81235993 AT
1 AT
81235995 TGAAATGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
ATATATATATTATTGA
Found at i:81235998 original size:21 final size:22
Alignment explanation
Indices: 81235947--81235998 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 22
81235937 GATTGAATGG
81235947 ATTGAATTGATATATATATATAT
1 ATTGAATTGA-ATATATATATAT
*
81235970 ATT--A-TGAATATATTTAT-T
1 ATTGAATTGAATATATATATAT
81235988 ATTGAATTGAA
1 ATTGAATTGAA
81235999 ATGAATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 4 0.16
21 5 0.20
23 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (22 bp):
ATTGAATTGAATATATATATAT
Found at i:81241409 original size:46 final size:46
Alignment explanation
Indices: 81241342--81241609 Score: 253
Period size: 46 Copynumber: 5.8 Consensus size: 46
81241332 ATTTGGGCAT
*
81241342 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
81241388 CCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGGTAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--C
** *
81241435 CTAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * * * * *
81241481 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GAAATAAC-TAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GAT-GCGAACGC
* *
81241526 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
81241574 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81241610 GCGGGTTACA
Statistics
Matches: 181, Mismatches: 25, Indels: 32
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 1 0.01
45 9 0.05
46 91 0.50
47 55 0.30
48 11 0.06
49 1 0.01
50 4 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:81241602 original size:93 final size:93
Alignment explanation
Indices: 81241337--81241602 Score: 433
Period size: 93 Copynumber: 2.9 Consensus size: 93
81241327 AGGATATTTG
*
81241337 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
* **
81241402 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGAAATAACTA
* ** *
81241430 GGTATCTAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81241495 TTGAGTCCGAGTTCGTGAGAAATAACTA
66 TTGAGTCCGAGTTCGTGAGAAATAACTA
* * *
81241523 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81241588 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
81241603 CTTATGGGCG
Statistics
Matches: 158, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 158 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGAAATAACTA
Found at i:81243751 original size:17 final size:18
Alignment explanation
Indices: 81243729--81243762 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
81243719 ATGCGAGTAA
81243729 ATAATAATAAT-ACAACT
1 ATAATAATAATAACAACT
*
81243746 ATAATAGTAATAACAAC
1 ATAATAATAATAACAAC
81243763 AGTAATTCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.26
Consensus pattern (18 bp):
ATAATAATAATAACAACT
Found at i:81244836 original size:29 final size:30
Alignment explanation
Indices: 81244769--81244828 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
81244759 CATATTTTTG
81244769 GAATTTAAAAGATAAATAAAAAATGAACTA
1 GAATTTAAAAGATAAATAAAAAATGAACTA
81244799 GAATTTAAAAGATAAATAAAAAATGAACTA
1 GAATTTAAAAGATAAATAAAAAATGAACTA
81244829 CCTTTAAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.63, C:0.03, G:0.10, T:0.23
Consensus pattern (30 bp):
GAATTTAAAAGATAAATAAAAAATGAACTA
Found at i:81249750 original size:18 final size:20
Alignment explanation
Indices: 81249713--81249752 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
81249703 TGTGAAGAAA
81249713 AAGAAGTAGGAAATAAAATG
1 AAGAAGTAGGAAATAAAATG
*
81249733 AAGAAGT-GGAGA-AAAATG
1 AAGAAGTAGGAAATAAAATG
81249751 AA
1 AA
81249753 AAATAAATAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 4 0.21
20 7 0.37
ACGTcount: A:0.60, C:0.00, G:0.28, T:0.12
Consensus pattern (20 bp):
AAGAAGTAGGAAATAAAATG
Found at i:81253151 original size:31 final size:32
Alignment explanation
Indices: 81253095--81253154 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
81253085 GAGCAAATCA
81253095 TATGATAGAGTGAAGTAGGGCTTTCTTTGAGT
1 TATGATAGAGTGAAGTAGGGCTTTCTTTGAGT
*
81253127 TATGATAGAGAT-AA-TAGGGTTTTCTTTG
1 TATGATAGAG-TGAAGTAGGGCTTTCTTTG
81253155 CCGTGGATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 13 0.50
32 12 0.46
33 1 0.04
ACGTcount: A:0.27, C:0.05, G:0.28, T:0.40
Consensus pattern (32 bp):
TATGATAGAGTGAAGTAGGGCTTTCTTTGAGT
Found at i:81253437 original size:78 final size:78
Alignment explanation
Indices: 81253300--81253457 Score: 246
Period size: 78 Copynumber: 2.0 Consensus size: 78
81253290 ATTTGTAGTG
* ** *
81253300 AAGGACTCTTTGTCTTAATGAAATTAGCTTTGAGTGAAGGTCAATTAAAAGGGTTAAGGTAGGTC
1 AAGGACTCTCTGTCTTAATGAAATTAGCTTTGAGTGAAGGTCAATTAAAAGGGCCAAGGTAAGTC
*
81253365 GAGGGGAACCACA
66 GAGGGGAACAACA
*
81253378 AAGGACTCTCTGTTTTAATGAAATTAGCTTTGAGTGAAGGTCAATTTAAAA-GGCCAAGGTAAGT
1 AAGGACTCTCTGTCTTAATGAAATTAGCTTTGAGTGAAGGTCAA-TTAAAAGGGCCAAGGTAAGT
81253442 CGAGGGGAACAACA
65 CGAGGGGAACAACA
81253456 AA
1 AA
81253458 TCTTTCATTT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
78 67 0.92
79 6 0.08
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (78 bp):
AAGGACTCTCTGTCTTAATGAAATTAGCTTTGAGTGAAGGTCAATTAAAAGGGCCAAGGTAAGTC
GAGGGGAACAACA
Found at i:81256062 original size:18 final size:18
Alignment explanation
Indices: 81256039--81256119 Score: 117
Period size: 18 Copynumber: 4.5 Consensus size: 18
81256029 TATAATTCTA
* *
81256039 GTCAAAATTACACTATTG
1 GTCAAAATTACAATACTG
*
81256057 GTCAAAATTACAATGCTG
1 GTCAAAATTACAATACTG
* *
81256075 GTCAAAATTATAATGCTG
1 GTCAAAATTACAATACTG
81256093 GTCAAAATTACAATACTG
1 GTCAAAATTACAATACTG
81256111 GTCAAAATT
1 GTCAAAATT
81256120 GTCATGCTAG
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 57 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.31
Consensus pattern (18 bp):
GTCAAAATTACAATACTG
Found at i:81256095 original size:36 final size:36
Alignment explanation
Indices: 81256055--81256136 Score: 128
Period size: 36 Copynumber: 2.3 Consensus size: 36
81256045 ATTACACTAT
*
81256055 TGGTCAAAATTACAATGCTGGTCAAAATTATAATGC
1 TGGTCAAAATTACAATACTGGTCAAAATTATAATGC
* *
81256091 TGGTCAAAATTACAATACTGGTCAAAATTGTCATGC
1 TGGTCAAAATTACAATACTGGTCAAAATTATAATGC
*
81256127 TAGTCAAAAT
1 TGGTCAAAAT
81256137 GGTTCTCTGC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (36 bp):
TGGTCAAAATTACAATACTGGTCAAAATTATAATGC
Found at i:81256113 original size:54 final size:54
Alignment explanation
Indices: 81256028--81256136 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
81256018 ATGGTGGAAG
* * * *
81256028 TTATAATTCTAGTCAAAATTACACTATTGGTCAAAATT-ACAATGCTGGTCAAAA
1 TTATAATGCTAGTCAAAATTACAATACTGGTCAAAATTGAC-ATGCTAGTCAAAA
* *
81256082 TTATAATGCTGGTCAAAATTACAATACTGGTCAAAATTGTCATGCTAGTCAAAA
1 TTATAATGCTAGTCAAAATTACAATACTGGTCAAAATTGACATGCTAGTCAAAA
81256136 T
1 T
81256137 GGTTCTCTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
54 47 0.98
55 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (54 bp):
TTATAATGCTAGTCAAAATTACAATACTGGTCAAAATTGACATGCTAGTCAAAA
Found at i:81256132 original size:18 final size:17
Alignment explanation
Indices: 81256055--81256136 Score: 83
Period size: 18 Copynumber: 4.6 Consensus size: 17
81256045 ATTACACTAT
*
81256055 TGGTCAAAATTACAATGC
1 TGGTCAAAATTTC-ATGC
*
81256073 TGGTCAAAATTATAATGC
1 TGGTCAAAATT-TCATGC
* *
81256091 TGGTCAAAATTACAATAC
1 TGGTCAAAATTTC-ATGC
81256109 TGGTCAAAATTGTCATGC
1 TGGTCAAAATT-TCATGC
*
81256127 TAGTCAAAAT
1 TGGTCAAAAT
81256137 GGTTCTCTGC
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
18 52 0.98
19 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (17 bp):
TGGTCAAAATTTCATGC
Found at i:81267087 original size:22 final size:22
Alignment explanation
Indices: 81267056--81267103 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
81267046 ATTATTTAAA
*
81267056 TAAA-TAATTGAA-GTTCGAAAT
1 TAAATTAATTGAATG-TAGAAAT
81267077 TAAATTAATTGAATGTAGAAAT
1 TAAATTAATTGAATGTAGAAAT
81267099 TAAAT
1 TAAAT
81267104 ATATTTTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 19 0.79
23 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.35
Consensus pattern (22 bp):
TAAATTAATTGAATGTAGAAAT
Found at i:81275659 original size:25 final size:24
Alignment explanation
Indices: 81275610--81275659 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
81275600 AACCCTAAGC
* *
81275610 TTTTCTCCTTTTTCTTTCTTTTAT
1 TTTTCTCCTTTTTCGTTCTTCTAT
81275634 TTTTCTCCCTTGTTTCGTT-TTCTAT
1 TTTTCT-CCTT-TTTCGTTCTTCTAT
81275659 T
1 T
81275660 CTTTTCTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 6 0.27
25 10 0.45
26 6 0.27
ACGTcount: A:0.04, C:0.22, G:0.04, T:0.70
Consensus pattern (24 bp):
TTTTCTCCTTTTTCGTTCTTCTAT
Found at i:81275725 original size:5 final size:5
Alignment explanation
Indices: 81275715--81275760 Score: 64
Period size: 5 Copynumber: 10.0 Consensus size: 5
81275705 ATTCTTTTAT
81275715 TATAA TATAA TAT-A T-TAA TATAA TATAA TAT-A -ATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
81275761 CATTTACTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
3 3 0.08
4 6 0.16
5 28 0.76
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:81275730 original size:23 final size:23
Alignment explanation
Indices: 81275715--81275760 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
81275705 ATTCTTTTAT
81275715 TATAATATAATATATTAATATAA
1 TATAATATAATATATTAATATAA
81275738 TATAATATAATA-ATATAATATAA
1 TATAATATAATATAT-TAATATAA
81275761 CATTTACTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 2 0.09
23 20 0.91
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TATAATATAATATATTAATATAA
Found at i:81275735 original size:13 final size:13
Alignment explanation
Indices: 81275715--81275760 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
81275705 ATTCTTTTAT
81275715 TATAATATAAT-A
1 TATAATATAATAA
*
81275727 TATTA-AT-ATAA
1 TATAATATAATAA
81275738 TATAATATAATAA
1 TATAATATAATAA
81275751 TATAATATAA
1 TATAATATAA
81275761 CATTTACTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 2 0.07
11 7 0.24
12 6 0.21
13 14 0.48
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TATAATATAATAA
Found at i:81275738 original size:18 final size:18
Alignment explanation
Indices: 81275715--81275760 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
81275705 ATTCTTTTAT
*
81275715 TATAATATAATATATTAA
1 TATAATATAATATAATAA
81275733 TATAATATAATATAATAA
1 TATAATATAATATAATAA
81275751 TATAATATAA
1 TATAATATAA
81275761 CATTTACTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TATAATATAATATAATAA
Found at i:81275804 original size:19 final size:19
Alignment explanation
Indices: 81275780--81275818 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
81275770 AGATAATAAG
81275780 TAAATAGAT-TATTATTATT
1 TAAATAGATGTATT-TTATT
*
81275799 TAAATATATGTATTTTATT
1 TAAATAGATGTATTTTATT
81275818 T
1 T
81275819 TACCACATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TAAATAGATGTATTTTATT
Found at i:81277105 original size:17 final size:17
Alignment explanation
Indices: 81277083--81277171 Score: 59
Period size: 15 Copynumber: 5.7 Consensus size: 17
81277073 CATTAAGCCC
81277083 CCCAAAAAAAAACCTAA
1 CCCAAAAAAAAACCTAA
*
81277100 CCCAAAAAAAAAAC-AA
1 CCCAAAAAAAAACCTAA
** **
81277116 -AGAAAAAAAAA-AGAA
1 CCCAAAAAAAAACCTAA
*
81277131 ---AAAGAAAAACCT-A
1 CCCAAAAAAAAACCTAA
*
81277144 CCC-CAAAAAAACCTAA
1 CCCAAAAAAAAACCTAA
81277160 CCCAAAAAAAAA
1 CCCAAAAAAAAA
81277172 AAAAGAAGAA
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
13 9 0.16
15 20 0.36
16 6 0.11
17 20 0.36
ACGTcount: A:0.71, C:0.22, G:0.03, T:0.03
Consensus pattern (17 bp):
CCCAAAAAAAAACCTAA
Found at i:81277138 original size:11 final size:11
Alignment explanation
Indices: 81277106--81277139 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
81277096 CTAACCCAAA
81277106 AAAAAAACAAAG
1 AAAAAAA-AAAG
81277118 AAAAAAAAAAG
1 AAAAAAAAAAG
81277129 AAAAAGAAAAA
1 AAAAA-AAAAA
81277140 CCTACCCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:81277149 original size:45 final size:49
Alignment explanation
Indices: 81277086--81277203 Score: 142
Period size: 45 Copynumber: 2.5 Consensus size: 49
81277076 TAAGCCCCCC
*
81277086 AAAA-AAAAACCTAACCCAAAAAAA-AA-AC-AAAGAAAAAAAA-AAGA
1 AAAAGAAAAACCTAACCCAAAAAAACAACACAAAAAAAAAAAAAGAAGA
* *
81277130 AAAAGAAAAACCTACCCCAAAAAAACCTAACCCAAAAAAAAAAAAAGAAGA
1 AAAAGAAAAACCTAACCCAAAAAAA-C-AACACAAAAAAAAAAAAAGAAGA
81277181 AAAAGAAAAACCTAA--CAAAAAAA
1 AAAAGAAAAACCTAACCCAAAAAAA
81277204 GATGAAAAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
44 4 0.06
45 19 0.30
48 2 0.03
49 9 0.14
50 11 0.17
51 18 0.29
ACGTcount: A:0.75, C:0.17, G:0.05, T:0.03
Consensus pattern (49 bp):
AAAAGAAAAACCTAACCCAAAAAAACAACACAAAAAAAAAAAAAGAAGA
Found at i:81277154 original size:16 final size:15
Alignment explanation
Indices: 81277135--81277169 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
81277125 AAAGAAAAAG
*
81277135 AAAAACCTACCCCAA
1 AAAAACCTAACCCAA
81277150 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
81277165 AAAAA
1 AAAAA
81277170 AAAAAAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.63, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:81277170 original size:16 final size:15
Alignment explanation
Indices: 81277135--81277170 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
81277125 AAAGAAAAAG
*
81277135 AAAAACCTACCCCAA
1 AAAAACCTACCCAAA
81277150 AAAAACCTAACCCAAA
1 AAAAACCT-ACCCAAA
81277166 AAAAA
1 AAAAA
81277171 AAAAAGAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.64, C:0.31, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTACCCAAA
Found at i:81277753 original size:2 final size:2
Alignment explanation
Indices: 81277748--81277776 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
81277738 TCTTAAATAC
81277748 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81277777 TTTAAATACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:81277799 original size:39 final size:37
Alignment explanation
Indices: 81277674--81277811 Score: 113
Period size: 39 Copynumber: 3.6 Consensus size: 37
81277664 TTTTTTTAGG
* *
81277674 TATT-TTATATATATTATGTATATATTTTTTAATGCCA
1 TATTGTTATATATATTATGTATATA-TTTTAAATACCA
* * *
81277711 T-TAGTTATATATTTCTTATGTATATATTCTTAAATACTA
1 TATTGTTATATA--TATTATGTATATATT-TTAAATACCA
* *
81277750 TATAT-ATATATATATATATATATATATTTTAAATACCA
1 TAT-TGTTATATATAT-TATGTATATATTTTAAATACCA
81277788 TATTGTGTATATATTATTAT-TATA
1 TATTGT-TATATA-TATTATGTATA
81277812 AATTATTACT
Statistics
Matches: 80, Mismatches: 11, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
36 1 0.01
37 9 0.11
38 20 0.25
39 40 0.50
40 10 0.12
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.54
Consensus pattern (37 bp):
TATTGTTATATATATTATGTATATATTTTAAATACCA
Found at i:81279766 original size:12 final size:12
Alignment explanation
Indices: 81279749--81279784 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
81279739 ATTCATTTGA
81279749 CATTCATGCATT
1 CATTCATGCATT
81279761 CATTCATGCATT
1 CATTCATGCATT
*
81279773 CATTCATACATT
1 CATTCATGCATT
81279785 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:81285684 original size:11 final size:12
Alignment explanation
Indices: 81285662--81285750 Score: 58
Period size: 11 Copynumber: 7.2 Consensus size: 12
81285652 TTATTGTAGA
81285662 TATATATATTAT
1 TATATATATTAT
81285674 TATAT-TATTAT
1 TATATATATTAT
* *
81285685 TACATACTTTTAT
1 TATATA-TATTAT
81285698 TATATGCATA-TAT
1 TATAT--ATATTAT
* *
81285711 ATATATGTATTTT
1 -TATATATATTAT
*
81285724 TATGTACATATTA-
1 TA--TATATATTAT
81285737 TATATATATTAT
1 TATATATATTAT
81285749 TA
1 TA
81285751 CAAATATATC
Statistics
Matches: 58, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
11 18 0.31
12 11 0.19
13 16 0.28
14 12 0.21
15 1 0.02
ACGTcount: A:0.37, C:0.04, G:0.03, T:0.55
Consensus pattern (12 bp):
TATATATATTAT
Found at i:81292748 original size:70 final size:69
Alignment explanation
Indices: 81292629--81293051 Score: 403
Period size: 71 Copynumber: 6.2 Consensus size: 69
81292619 GAGTTAAGCC
*
81292629 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
81292693 TGAGGTA
63 TGAGGTA
* * ** * *
81292700 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTG
81292765 AGGTA
65 AGGTA
* *
81292770 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCT
81292835 GAGGTA
64 GAGGTA
* * * ** * * *
81292841 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT---------TTTA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
81292897 ---A
66 GGTA
*** ** *
81292898 TTTTTGTTTTTCA----AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
81292959 GGTA
66 GGTA
* * *
81292963 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGC
81293028 TGAGGTA
63 TGAGGTA
*
81293035 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
81293052 CAATTTACGT
Statistics
Matches: 285, Mismatches: 44, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
53 31 0.11
57 9 0.03
60 2 0.01
62 2 0.01
65 5 0.02
66 4 0.01
69 34 0.12
70 64 0.22
71 70 0.25
72 64 0.22
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (69 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
GGTA
Found at i:81292937 original size:122 final size:124
Alignment explanation
Indices: 81292771--81293017 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
81292761 GTTGAGGTAT
81292771 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
81292836 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
81292892 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
81292957 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
81293017 T
1 T
81293018 CAGGTCACGC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 12 0.11
122 60 0.53
123 1 0.01
124 13 0.11
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:81292982 original size:263 final size:257
Alignment explanation
Indices: 81292462--81293054 Score: 1042
Period size: 263 Copynumber: 2.3 Consensus size: 257
81292452 TTTCAAGGAA
*
81292462 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
81292527 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
81292592 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
81292657 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
81292719 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
*
81292784 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
81292849 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
81292914 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
81292979 TTT
255 TTT
* * * * * *
81292982 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
81293047 GTTTTCAA
64 GTTTTCAA
81293055 TTTACGTTGT
Statistics
Matches: 320, Mismatches: 8, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
257 120 0.38
260 2 0.01
262 4 0.01
263 131 0.41
265 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:81293013 original size:72 final size:71
Alignment explanation
Indices: 81292892--81293057 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
81292882 GAGTTAAGCC
** * *
81292892 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
81292956 TGAGGTA
65 TGAGGTA
*
81292963 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
81293028 TGAGGTA
65 TGAGGTA
* *
81293035 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
81293058 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Done.