Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 262 of 325
Found at i:81713079 original size:3 final size:3
Alignment explanation
Indices: 81713071--81713115 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
81713061 ATTTTTAGAT
81713071 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81713116 CCCTTGTTCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:81714706 original size:6 final size:6
Alignment explanation
Indices: 81714691--81714788 Score: 106
Period size: 6 Copynumber: 16.3 Consensus size: 6
81714681 ATTGAGTCCA
* * * * *
81714691 TTTATC TTTATG TTTATT TTTATT TTTATC TTTATT TTTATT TTTCTC
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
** * * *
81714739 TTTATT TTTATT TTTAGG TTCATT TTTATT TTTAGT TTTATG TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
81714787 TT
1 TT
81714789 GTTTTCATAT
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 74 1.00
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:81714718 original size:18 final size:18
Alignment explanation
Indices: 81714691--81714788 Score: 117
Period size: 18 Copynumber: 5.4 Consensus size: 18
81714681 ATTGAGTCCA
*
81714691 TTTATCTTTATGTTTATT
1 TTTATTTTTATGTTTATT
*
81714709 TTTATTTTTATCTTTATT
1 TTTATTTTTATGTTTATT
* *
81714727 TTTATTTTTCTCTTTATT
1 TTTATTTTTATGTTTATT
* *
81714745 TTTATTTTTAGGTTCATT
1 TTTATTTTTATGTTTATT
*
81714763 TTTATTTTTA-GTTTTATG
1 TTTATTTTTATG-TTTATT
81714781 TTTATTTT
1 TTTATTTT
81714789 GTTTTCATAT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
17 1 0.01
18 69 0.99
ACGTcount: A:0.15, C:0.05, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTATTTTTATGTTTATT
Found at i:81721601 original size:3 final size:3
Alignment explanation
Indices: 81721593--81721782 Score: 380
Period size: 3 Copynumber: 63.3 Consensus size: 3
81721583 AGAAACACGA
81721593 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
81721641 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
81721689 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
81721737 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
81721783 TGGTTATGAA
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 187 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:81739887 original size:17 final size:18
Alignment explanation
Indices: 81739859--81739898 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
81739849 CTCGAAATTT
81739859 AAGTTTTCCTAAAATAAA
1 AAGTTTTCCTAAAATAAA
*
81739877 TAGTTTT-CTAAAATAAA
1 AAGTTTTCCTAAAATAAA
81739894 AAGTT
1 AAGTT
81739899 CACAAGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.38
Consensus pattern (18 bp):
AAGTTTTCCTAAAATAAA
Found at i:81740739 original size:65 final size:65
Alignment explanation
Indices: 81740658--81740787 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
81740648 ACCACATACA
81740658 ACATATTCCCAAAGCATCATTAACCAAGTGTCATAATTCACATATTTAGTCATATTCCATGCATT
1 ACATATTCCCAAAGCATCATTAACCAAGTGTCATAATTCACATATTTAGTCATATTCCATGCATT
81740723 ACATATTCCCAAAGCATCATTAACCAAGTGTCATAATTCACATATTTAGTCATATTCCATGCATT
1 ACATATTCCCAAAGCATCATTAACCAAGTGTCATAATTCACATATTTAGTCATATTCCATGCATT
81740788 CTTTTACACC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.35, C:0.23, G:0.08, T:0.34
Consensus pattern (65 bp):
ACATATTCCCAAAGCATCATTAACCAAGTGTCATAATTCACATATTTAGTCATATTCCATGCATT
Found at i:81742191 original size:43 final size:43
Alignment explanation
Indices: 81742143--81742309 Score: 126
Period size: 43 Copynumber: 3.9 Consensus size: 43
81742133 ATTACTGAGA
81742143 TGTGATTACATGTAAAACCATGTCTGGGACATTGGCATTTTAT
1 TGTGATTACATGTAAAACCATGTCTGGGACATTGGCATTTTAT
* * ** * *
81742186 TGTGATTACATGTAAGACCATGTTTTAGACATTAGCATCGTTA-
1 TGTGATTACATGTAAAACCATGTCTGGGACATTGGCAT-TTTAT
* * * * * **
81742229 TATGATTTCGTGTAAGATCC-TGTCTGGGACAGTGGCA-TCGAT
1 TGTGATTACATGTAA-AACCATGTCTGGGACATTGGCATTTTAT
* * * *
81742271 ATGTGATAACATGTAAGACCATATCTGGGATA-TGGCATT
1 -TGTGATTACATGTAAAACCATGTCTGGGACATTGGCATT
81742310 ATATGAACTT
Statistics
Matches: 91, Mismatches: 27, Indels: 12
0.70 0.21 0.09
Matches are distributed among these distances:
41 1 0.01
42 7 0.08
43 78 0.86
44 5 0.05
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (43 bp):
TGTGATTACATGTAAAACCATGTCTGGGACATTGGCATTTTAT
Found at i:81742955 original size:17 final size:17
Alignment explanation
Indices: 81742935--81742969 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81742925 TATAGCTTAC
81742935 TTTGTGTTATTTTTCTA
1 TTTGTGTTATTTTTCTA
81742952 TTTGTGTTATTTTTCTA
1 TTTGTGTTATTTTTCTA
81742969 T
1 T
81742970 GTTTTATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.06, G:0.11, T:0.71
Consensus pattern (17 bp):
TTTGTGTTATTTTTCTA
Found at i:81743903 original size:66 final size:66
Alignment explanation
Indices: 81743809--81743932 Score: 203
Period size: 66 Copynumber: 1.9 Consensus size: 66
81743799 CACATGGGCA
* * *
81743809 TGTGGCTGGCCATGTGACCCAAGTCAGTAACCCTTCTAGATTTCCCACAACCAAGGCACACAGGC
1 TGTGGCCGGCCATGTGACCCAAGTCAGTAACCCCTCCAGATTTCCCACAACCAAGGCACACAGGC
81743874 G
66 G
* *
81743875 TGTGGCCGGCCATGTGACTCAAGTCAGTAACCCCTCCAGATTTCCCACGACCAAGGCA
1 TGTGGCCGGCCATGTGACCCAAGTCAGTAACCCCTCCAGATTTCCCACAACCAAGGCA
81743933 TACGAGCGTC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
66 53 1.00
ACGTcount: A:0.25, C:0.33, G:0.23, T:0.19
Consensus pattern (66 bp):
TGTGGCCGGCCATGTGACCCAAGTCAGTAACCCCTCCAGATTTCCCACAACCAAGGCACACAGGC
G
Found at i:81749689 original size:43 final size:42
Alignment explanation
Indices: 81749599--81749767 Score: 144
Period size: 43 Copynumber: 4.0 Consensus size: 42
81749589 TACCGAGATG
* * * * *
81749599 TGATTACATATAAGACTATGTCTGGGACATTGGCATTGTATTG
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA-TA
* *
81749642 TGATTACGTGTAAGACCATGTATGGGATATTGGCATCGTTATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TATA
* * * * *
81749685 TGATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATCAATATA
1 TGATTACGTGTAAGACCATGTCTGGGACATTGGCATC-GTATA
* * * *
81749728 TGA-TAAGATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 TGATTACG-TGTAAGACCATGTCTGGGACATTGGCATCGTAT
81749768 GAGCTTTATG
Statistics
Matches: 101, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
41 3 0.03
42 8 0.08
43 88 0.87
44 2 0.02
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (42 bp):
TGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
Found at i:81766393 original size:2 final size:2
Alignment explanation
Indices: 81766388--81766419 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
81766378 GATTAAAATG
81766388 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81766420 GTTAAAAAGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:81768369 original size:21 final size:21
Alignment explanation
Indices: 81768343--81768385 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
81768333 CCTCTCGAGC
81768343 ATATGTTACAATTAGAATTTA
1 ATATGTTACAATTAGAATTTA
81768364 ATATGTTACAATTAGAATTTA
1 ATATGTTACAATTAGAATTTA
81768385 A
1 A
81768386 CCTGGACTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (21 bp):
ATATGTTACAATTAGAATTTA
Found at i:81773363 original size:107 final size:107
Alignment explanation
Indices: 81773177--81773390 Score: 410
Period size: 107 Copynumber: 2.0 Consensus size: 107
81773167 TTCTAACACC
81773177 ATCACTCATACCAGCTTAGAGATATAGCAAAATAACCACGAAAGAAAATAAAGAACTTGCCAATA
1 ATCACTCATACCAGCTTAGAGATATAGCAAAATAACCACGAAAGAAAATAAAGAACTTGCCAATA
81773242 CTTATTATATCCAGCAAATAGTGTATACAAATGTGGCATTTT
66 CTTATTATATCCAGCAAATAGTGTATACAAATGTGGCATTTT
* *
81773284 ATCACTCATACTAGCTTAGAGATATAGCAAAATAACCACGGAAGAAAATAAAGAACTTGCCAATA
1 ATCACTCATACCAGCTTAGAGATATAGCAAAATAACCACGAAAGAAAATAAAGAACTTGCCAATA
81773349 CTTATTATATCCAGCAAATAGTGTATACAAATGTGGCATTTT
66 CTTATTATATCCAGCAAATAGTGTATACAAATGTGGCATTTT
81773391 CCAGCAAGCT
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
107 105 1.00
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.27
Consensus pattern (107 bp):
ATCACTCATACCAGCTTAGAGATATAGCAAAATAACCACGAAAGAAAATAAAGAACTTGCCAATA
CTTATTATATCCAGCAAATAGTGTATACAAATGTGGCATTTT
Found at i:81776202 original size:21 final size:21
Alignment explanation
Indices: 81776176--81776233 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
81776166 AACACCGCTT
81776176 GTCACACGGGTGTGTCGTAGG
1 GTCACACGGGTGTGTCGTAGG
*
81776197 GTCACACGGGTGTGTCGTTGG
1 GTCACACGGGTGTGTCGTAGG
*
81776218 GTCACACGGGCGTGTC
1 GTCACACGGGTGTGTC
81776234 CCTTGGACCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.12, C:0.22, G:0.41, T:0.24
Consensus pattern (21 bp):
GTCACACGGGTGTGTCGTAGG
Found at i:81784547 original size:36 final size:36
Alignment explanation
Indices: 81784500--81784572 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
81784490 TGTTTTGATT
81784500 CATCCTAAAACCATAATCCGAAGTTAGCTACAAATC
1 CATCCTAAAACCATAATCCGAAGTTAGCTACAAATC
* * *
81784536 CATCCTAAAACCCTAATTCGAAGTTAGTTACAAATC
1 CATCCTAAAACCATAATCCGAAGTTAGCTACAAATC
81784572 C
1 C
81784573 TGAAGCGAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.40, C:0.27, G:0.08, T:0.25
Consensus pattern (36 bp):
CATCCTAAAACCATAATCCGAAGTTAGCTACAAATC
Found at i:81788627 original size:29 final size:29
Alignment explanation
Indices: 81788568--81788670 Score: 109
Period size: 29 Copynumber: 3.6 Consensus size: 29
81788558 GTGACGAGAT
* * * *
81788568 TGGCACTGAGTGTGTGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* *
81788597 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTTGGAATATA
* * *
81788626 TGGCACTATGTGTGCGGGCTT-GAATCACA
1 TGGCACTAAGTGTGCGAGCTTGGAAT-ATA
81788655 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81788671 TGATTGAGTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
28 3 0.05
29 58 0.95
ACGTcount: A:0.21, C:0.16, G:0.33, T:0.30
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGCTTGGAATATA
Found at i:81795708 original size:26 final size:26
Alignment explanation
Indices: 81795678--81795729 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
81795668 GAATTTTGAG
81795678 AAAGAAATTTGTTCGATCTATTCTGT
1 AAAGAAATTTGTTCGATCTATTCTGT
81795704 AAAGAAATTTGTTCGATCTATTCTGT
1 AAAGAAATTTGTTCGATCTATTCTGT
81795730 GATGATAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (26 bp):
AAAGAAATTTGTTCGATCTATTCTGT
Found at i:81806704 original size:20 final size:19
Alignment explanation
Indices: 81806656--81806707 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
81806646 GCTATCAAGA
*
81806656 GTACCGAAATACATCAGGG
1 GTACCGAAGTACATCAGGG
*
81806675 GCA-CGTAAGTACGATCAGGG
1 GTACCG-AAGTAC-ATCAGGG
81806695 GTACCGAAGTACA
1 GTACCGAAGTACA
81806708 ACAGTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
18 2 0.07
19 8 0.30
20 15 0.56
21 2 0.07
ACGTcount: A:0.35, C:0.21, G:0.29, T:0.15
Consensus pattern (19 bp):
GTACCGAAGTACATCAGGG
Found at i:81817011 original size:46 final size:47
Alignment explanation
Indices: 81816951--81817178 Score: 322
Period size: 46 Copynumber: 5.0 Consensus size: 47
81816941 TTTGACATGA
* * * * * *
81816951 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*** *
81816997 TGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
81817043 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
81817089 TGCGATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
81817135 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAG
81817179 AGAGCACACT
Statistics
Matches: 166, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
45 7 0.04
46 156 0.94
47 3 0.02
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:81819328 original size:11 final size:11
Alignment explanation
Indices: 81819312--81819363 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
81819302 TATACTAAAT
81819312 AAATAATAATA
1 AAATAATAATA
*
81819323 AAATAAT-ATT
1 AAATAATAATA
* *
81819333 AAATATCTCATA
1 AAATA-ATAATA
*
81819345 AAATATTAATA
1 AAATAATAATA
81819356 AAATAATA
1 AAATAATA
81819364 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:81828155 original size:46 final size:48
Alignment explanation
Indices: 81828050--81828319 Score: 236
Period size: 46 Copynumber: 5.7 Consensus size: 48
81828040 ACATTATGAG
* ** * *
81828050 AGCCAGTGTAAGTCCATGTCTGGGACATGGCATCGGTATTGAAACG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTA
*
81828097 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTA
* * **
81828144 AGCCAATGTAAGA-CATGTCTGGGACAT-GCATTGG-CTACAAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-TGAGATGTA
* * * * * *
81828189 -GTCAGTGTAAAACCATGTCTAGGACATGGCATCGGCATGGATATGTTAA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATG-T-A
** * * *
81828238 ATTCAGTGTAAGACCATGTCTGGGACATGACATC-GACTTGACG-TGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA-GATGTA
81828285 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
81828320 ACATTATACA
Statistics
Matches: 179, Mismatches: 32, Indels: 22
0.77 0.14 0.09
Matches are distributed among these distances:
44 9 0.05
45 15 0.08
46 60 0.34
47 48 0.27
48 12 0.07
49 6 0.03
50 29 0.16
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGAGATGTA
Found at i:81828254 original size:50 final size:47
Alignment explanation
Indices: 81828053--81828321 Score: 178
Period size: 47 Copynumber: 5.7 Consensus size: 47
81828043 TTATGAGAGC
* * * *
81828053 CAGTGTAAGTCCATGTCTGGGACATGGCATCGGTA-TTGAAACG-AGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTGGACATGTA-AGT
* * * *
81828100 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTGAGATGTAAGC
1 C-AGTGTAAGACCATGTCTGGGACATGGCATC-GACTGGACATGTAAGT
* * * * **
81828147 CAATGTAAGA-CATGTCTGGGACAT-GCATTGGCT--ACAAGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTGGACATG-TAAGT
* * * * *
81828191 CAGTGTAAAACCATGTCTAGGACATGGCATCGGCATGGATATGTTAAATT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TGGACATG-T-AAGT
* * * * *
81828241 CAGTGTAAGACCATGTCTGGGACATGACATCGACTTGACGTGTGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGACTGGACATGTAAGT
81828288 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGAC
81828322 ATTATACACT
Statistics
Matches: 178, Mismatches: 33, Indels: 22
0.76 0.14 0.09
Matches are distributed among these distances:
43 3 0.02
44 10 0.06
45 16 0.09
46 48 0.27
47 52 0.29
48 9 0.05
49 9 0.05
50 31 0.17
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGACTGGACATGTAAGT
Found at i:81833559 original size:44 final size:44
Alignment explanation
Indices: 81833496--81833581 Score: 154
Period size: 44 Copynumber: 2.0 Consensus size: 44
81833486 AAAAGCCTTG
*
81833496 GCAAAATATAACTCAATGCAAGATTCAGATTCCACTAGTAGAAT
1 GCAAAATATAACTCAATGCAAGATTCAAATTCCACTAGTAGAAT
*
81833540 GCAAAATATAATTCAATGCAAGATTCAAATTCCACTAGTAGA
1 GCAAAATATAACTCAATGCAAGATTCAAATTCCACTAGTAGA
81833582 CCGATTGTTG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.44, C:0.17, G:0.13, T:0.26
Consensus pattern (44 bp):
GCAAAATATAACTCAATGCAAGATTCAAATTCCACTAGTAGAAT
Found at i:81836735 original size:43 final size:43
Alignment explanation
Indices: 81836687--81836772 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
81836677 ATTAAGCTGT
*
81836687 AAGGGAGATACTGTAGTGTGGCAAGCCATGTGAAAAGTTCTGG
1 AAGGGAGATACTGCAGTGTGGCAAGCCATGTGAAAAGTTCTGG
81836730 AAGGGAGATACTGCAGTGTGGCAAGCCATGTGAAAAGTTCTGG
1 AAGGGAGATACTGCAGTGTGGCAAGCCATGTGAAAAGTTCTGG
81836773 GTCATGTGAG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.22
Consensus pattern (43 bp):
AAGGGAGATACTGCAGTGTGGCAAGCCATGTGAAAAGTTCTGG
Found at i:81837368 original size:22 final size:20
Alignment explanation
Indices: 81837343--81837382 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
81837333 AAGGAAACAA
81837343 GAATTCAAATGGAAATAGAGAG
1 GAATT-AAATGG-AATAGAGAG
*
81837365 GAATTGAATGGAATAGAG
1 GAATTAAATGGAATAGAG
81837383 CGACTCAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 5 0.29
22 5 0.29
ACGTcount: A:0.47, C:0.03, G:0.30, T:0.20
Consensus pattern (20 bp):
GAATTAAATGGAATAGAGAG
Found at i:81839064 original size:48 final size:48
Alignment explanation
Indices: 81838997--81839376 Score: 299
Period size: 48 Copynumber: 7.9 Consensus size: 48
81838987 ATATATCGGT
*
81838997 GCCGATGCCATGT-TCCAAACATGGTCTTACACTAGCCCACATGA-CGAG
1 GCCGATGCCATGTCT-CAAACATGGTCTTACACTAGCCCACAT-ATCAAG
* * * * *
81839045 CCCGATGCCATGTCTCAAACATGATCTTACACTA-CCTCTCATATAAAT
1 GCCGATGCCATGTCTCAAACATGGTCTTACACTAGCC-CACATATCAAG
* * * *
81839093 GCCGATGCCATGT-TCCATACATAGTCTTACACTGGCTCACATATCAAG
1 GCCGATGCCATGTCT-CAAACATGGTCTTACACTAGCCCACATATCAAG
* * * * * *
81839141 GCCGATGCCATGTCCCAAAAAATGGTCTTACACTAGCTCTCATATAAAT
1 GCCGATGCCATGTCTC-AAACATGGTCTTACACTAGCCCACATATCAAG
* * * **
81839190 GTCGATGCCATGTTCCCAAACATGGTCTTACACTGGCTCC-CATATTGAG
1 GCCGATGCCATG-TCTCAAACATGGTCTTACACTAGC-CCACATATCAAG
* * * *
81839239 GTCGATGCCATGTCTCAGACATGGTCTTACACTAGCTCACATATCGAG
1 GCCGATGCCATGTCTCAAACATGGTCTTACACTAGCCCACATATCAAG
* * * * * *
81839287 GCCGATGCCATGTC-CTAGACATGGTATTACACTAGCTCTCAT-TAAAT
1 GCCGATGCCATGTCTC-AAACATGGTCTTACACTAGCCCACATATCAAG
* * * * *
81839334 GTCGATGCTATGT-TCCAAACATGCTCTTACACTGGCTCACATA
1 GCCGATGCCATGTCT-CAAACATGGTCTTACACTAGCCCACATA
81839377 ACCCTAGTAT
Statistics
Matches: 270, Mismatches: 48, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
47 40 0.15
48 151 0.56
49 74 0.27
50 5 0.02
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCTCAAACATGGTCTTACACTAGCCCACATATCAAG
Found at i:81839210 original size:146 final size:144
Alignment explanation
Indices: 81838997--81839366 Score: 430
Period size: 146 Copynumber: 2.6 Consensus size: 144
81838987 ATATATCGGT
* * *
81838997 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGC-C-CACATGACGA-GCCCGATGCCATG-T
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTAGCTCTCATAT-A-AATG-TCGATGCCATGTT
* * * *
81839058 CTCAAACATGATCTTACACTACCTCTCATATAAATGCCGATGCCATGT-TCCATACATAGTCTTA
62 CCCAAACATGATCTTACACTACCTCCCATATAAAGGCCGATGCCATGTCT-CAGACATAGTCTTA
*
81839122 CACTGGCTCACATATCAAG
126 CACTAGCTCACATATCAAG
*
81839141 GCCGATGCCATGTCCCAAAAAATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCC
1 GCCGATGCCATGT-CC-AAACATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCC
* ** ** * *
81839206 CAAACATGGTCTTACACTGGCTCCCATATTGAGGTCGATGCCATGTCTCAGACATGGTCTTACAC
64 CAAACATGATCTTACACTACCTCCCATATAAAGGCCGATGCCATGTCTCAGACATAGTCTTACAC
*
81839271 TAGCTCACATATCGAG
129 TAGCTCACATATCAAG
* * *
81839287 GCCGATGCCATGTCCTAGACATGGTATTACACTAGCTCTCAT-TAAATGTCGATGCTATGTT-CC
1 GCCGATGCCATGTCC-AAACATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCCC
*
81839350 AAACATGCTCTTACACT
65 AAACATGATCTTACACT
81839367 GGCTCACATA
Statistics
Matches: 196, Mismatches: 23, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
143 19 0.10
144 32 0.16
145 55 0.28
146 85 0.43
147 5 0.03
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (144 bp):
GCCGATGCCATGTCCAAACATGGTCTTACACTAGCTCTCATATAAATGTCGATGCCATGTTCCCA
AACATGATCTTACACTACCTCCCATATAAAGGCCGATGCCATGTCTCAGACATAGTCTTACACTA
GCTCACATATCAAG
Found at i:81839319 original size:194 final size:192
Alignment explanation
Indices: 81838947--81839376 Score: 463
Period size: 194 Copynumber: 2.2 Consensus size: 192
81838937 AGGGTAAGAT
* * * * * * **
81838947 GCCGTTGCCATGTCCTACACATGGTCTTATATTAGCTCTCATATATCGGTGCCGATGCCATGTTC
1 GCCGATGCCATGTCCCAAAAATGGTCTTACACTAGCTCTCATATA-CAATGCCGATGCCATGTTC
81839012 CAAACATGGTCTTACACTAGCCCACATGACGAGCCCGATGCCATGTCTCAAACATGATCTTACAC
65 CAAACATGGTCTTACACTAGCCCACATGACGAGCCCGATGCCATGTCTCAAACATGATCTTACAC
* * * * * *
81839077 TACCTCTCATATAAATGCCGATGCCATGTTCCATACATAGTCTTACACTGGCTCACATATCAAG
130 TACCTCACATATAAAGGCCGATGCCATGTTCCAGACATAGTATTACACTAGCTCACAT-TAAAG
*
81839141 GCCGATGCCATGTCCCAAAAAATGGTCTTACACTAGCTCTCATATA-AATGTCGATGCCATGTTC
1 GCCGATGCCATGTCCC-AAAAATGGTCTTACACTAGCTCTCATATACAATGCCGATGCCATGTT-
* * ** * *
81839205 CCAAACATGGTCTTACACTGGCTCC-CAT-ATTGAGGTCGATGCCATGTCTCAGACATGGTCTTA
64 CCAAACATGGTCTTACACTAGC-CCACATGA-CGAGCCCGATGCCATGTCTCAAACATGATCTTA
* ** * *
81839268 CACTAGCTCACATATCGAGGCCGATGCCATG-TCCTAGACATGGTATTACACTAGCTCTCATTAA
127 CACTACCTCACATATAAAGGCCGATGCCATGTTCC-AGACATAGTATTACACTAGCTCACATTAA
*
81839332 AT
191 AG
* * * * * * *
81839334 GTCGATGCTATGTTCCAAACATGCTCTTACACTGGCTCACATA
1 GCCGATGCCATGTCCCAAAAATGGTCTTACACTAGCTCTCATA
81839377 ACCCTAGTAT
Statistics
Matches: 197, Mismatches: 34, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
192 23 0.12
193 34 0.17
194 113 0.57
195 27 0.14
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.28
Consensus pattern (192 bp):
GCCGATGCCATGTCCCAAAAATGGTCTTACACTAGCTCTCATATACAATGCCGATGCCATGTTCC
AAACATGGTCTTACACTAGCCCACATGACGAGCCCGATGCCATGTCTCAAACATGATCTTACACT
ACCTCACATATAAAGGCCGATGCCATGTTCCAGACATAGTATTACACTAGCTCACATTAAAG
Found at i:81840223 original size:20 final size:20
Alignment explanation
Indices: 81840198--81840237 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81840188 TAAAAAGATG
81840198 AAGCCTTTTGTTTTATTCTA
1 AAGCCTTTTGTTTTATTCTA
81840218 AAGCCTTTTGTTTTATTCTA
1 AAGCCTTTTGTTTTATTCTA
81840238 TCTTATTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.10, T:0.55
Consensus pattern (20 bp):
AAGCCTTTTGTTTTATTCTA
Found at i:81849859 original size:18 final size:17
Alignment explanation
Indices: 81849804--81849859 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
81849794 TTTTAATTTT
81849804 TTATAAATTT-TAAAAG
1 TTATAAATTTGTAAAAG
**
81849820 TTATGAAATTTG-AAATTT
1 TTAT-AAATTTGTAAA-AG
81849838 TTATAAATATTGTAAAAG
1 TTATAAAT-TTGTAAAAG
81849856 TTAT
1 TTAT
81849860 TTCAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
16 4 0.13
17 13 0.42
18 11 0.35
19 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.46
Consensus pattern (17 bp):
TTATAAATTTGTAAAAG
Found at i:81851718 original size:12 final size:12
Alignment explanation
Indices: 81851701--81851725 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81851691 AACTAGTGAA
81851701 TGTATGTGTGTG
1 TGTATGTGTGTG
81851713 TGTATGTGTGTG
1 TGTATGTGTGTG
81851725 T
1 T
81851726 ATGAAGTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.40, T:0.52
Consensus pattern (12 bp):
TGTATGTGTGTG
Found at i:81852209 original size:23 final size:23
Alignment explanation
Indices: 81852147--81852231 Score: 89
Period size: 23 Copynumber: 3.7 Consensus size: 23
81852137 GACATAATTC
* * *
81852147 TCTGTAAAGCCTTTATGTCATAT
1 TCTGTAAAGCCTATGTGACATAT
*
81852170 TTTGTAAAGCCTATGTGACATAT
1 TCTGTAAAGCCTATGTGACATAT
* * *
81852193 TCTGTAAAGCCTGTGTGGCGTAT
1 TCTGTAAAGCCTATGTGACATAT
* *
81852216 TCTATAAAGTCTATGT
1 TCTGTAAAGCCTATGT
81852232 TGTGTATTCT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (23 bp):
TCTGTAAAGCCTATGTGACATAT
Found at i:81858400 original size:43 final size:42
Alignment explanation
Indices: 81858335--81858446 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 42
81858325 CGTACAATGT
* *
81858335 CAACGTCCCAGATGTGGTCTTACATGTAATCAAATATCGATGC
1 CAACGTCCCAGATGTGGTCTTACACGAAATCAAATAT-GATGC
81858378 C-ACTGTCCCAGAT-TGGGTCTTACACGAAATCAAATATGATGC
1 CAAC-GTCCCAGATGT-GGTCTTACACGAAATCAAATATGATGC
* *
81858420 CAACGTCCCAGACGTGGTCCTACACGA
1 CAACGTCCCAGATGTGGTCTTACACGA
81858447 TAACACATAT
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (42 bp):
CAACGTCCCAGATGTGGTCTTACACGAAATCAAATATGATGC
Found at i:81867369 original size:9 final size:9
Alignment explanation
Indices: 81867355--81867387 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
81867345 AAAAATGGTT
81867355 ATATATTTG
1 ATATATTTG
81867364 ATATATTTG
1 ATATATTTG
81867373 ATATATTTG
1 ATATATTTG
81867382 ATATAT
1 ATATAT
81867388 GGAGACATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.55
Consensus pattern (9 bp):
ATATATTTG
Found at i:81868084 original size:2 final size:2
Alignment explanation
Indices: 81868072--81868105 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
81868062 ATCTTCCTTT
81868072 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
81868106 TAATTTATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:81869440 original size:5 final size:5
Alignment explanation
Indices: 81869423--81869455 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
81869413 TTGTATGTTC
*
81869423 TTTAT TTTGT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
81869456 CACAAAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:81880820 original size:24 final size:25
Alignment explanation
Indices: 81880758--81880820 Score: 67
Period size: 25 Copynumber: 2.6 Consensus size: 25
81880748 GGACTCACCA
*
81880758 CAGCTTGTATGAGCTTACCGATATT
1 CAGCTCGTATGAGCTTACCGATATT
* * *
81880783 CAGCTCGGAGGAGCTTACCG-TTTAT
1 CAGCTCGTATGAGCTTACCGATAT-T
81880808 C-GCTCGTATGAGC
1 CAGCTCGTATGAGC
81880821 CTACATGTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
24 12 0.39
25 19 0.61
ACGTcount: A:0.21, C:0.24, G:0.25, T:0.30
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATATT
Found at i:81887535 original size:15 final size:15
Alignment explanation
Indices: 81887517--81887548 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81887507 CATTTTACTA
*
81887517 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
81887532 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
81887547 TT
1 TT
81887549 TGCATTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:81889288 original size:16 final size:17
Alignment explanation
Indices: 81889269--81889325 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 17
81889259 TAATAAGATT
81889269 TAATATTAAT-TTAATA
1 TAATATTAATATTAATA
* * *
81889285 TAATATTTATCTTGATA
1 TAATATTAATATTAATA
*
81889302 -AATATT-ATATTAATT
1 TAATATTAATATTAATA
81889317 TAATATTAA
1 TAATATTAA
81889326 AATGATTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 6 0.18
16 21 0.64
17 6 0.18
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TAATATTAATATTAATA
Found at i:81891570 original size:23 final size:23
Alignment explanation
Indices: 81891537--81891596 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
81891527 TAATTTTAAG
81891537 ATTA-ATT-TCATTTTAATTAAAT
1 ATTATATTATCATTTTAA-TAAAT
* * *
81891559 GTTAT-TTATCATTATGATAAAT
1 ATTATATTATCATTTTAATAAAT
81891581 ATTATATTAT-ATTTTA
1 ATTATATTATCATTTTA
81891597 CTTTTGAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
22 18 0.62
23 11 0.38
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (23 bp):
ATTATATTATCATTTTAATAAAT
Found at i:81891722 original size:37 final size:37
Alignment explanation
Indices: 81891669--81891740 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
81891659 AATTTCTATG
*
81891669 AAAATTTTAACTTTAAACCAAATATTCAAATTAATGA
1 AAAAATTTAACTTTAAACCAAATATTCAAATTAATGA
*
81891706 AAAAATTTAACTTTAAACTAAATATTCAAATTAAT
1 AAAAATTTAACTTTAAACCAAATATTCAAATTAAT
81891741 TAATTAAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.53, C:0.10, G:0.01, T:0.36
Consensus pattern (37 bp):
AAAAATTTAACTTTAAACCAAATATTCAAATTAATGA
Found at i:81892764 original size:22 final size:23
Alignment explanation
Indices: 81892738--81892802 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
81892728 TATTGAAAAT
81892738 ACATATTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
*
81892760 GCATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
*
81892784 ACATTTTACATAATATATA
1 ACATATT-CATAATATATA
81892803 CACATATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 11 0.31
25 7 0.20
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:81893266 original size:25 final size:24
Alignment explanation
Indices: 81893219--81893266 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
81893209 AAAATAAGCC
* *
81893219 TATACGTAAATATATATATACATA
1 TATACGTAAACATATATAAACATA
81893243 TATACGTAAAACATATATAAACAT
1 TATACGT-AAACATATATAAACAT
81893267 TGGTGATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
TATACGTAAACATATATAAACATA
Found at i:81893393 original size:3 final size:3
Alignment explanation
Indices: 81893385--81893452 Score: 118
Period size: 3 Copynumber: 22.0 Consensus size: 3
81893375 ACAAAAGCAC
81893385 ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA
81893431 ATA ATA ATA ATA ATCA ATA ATA
1 ATA ATA ATA ATA AT-A ATA ATA
81893453 TGAAAATAAC
Statistics
Matches: 63, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
3 57 0.90
4 6 0.10
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:81895636 original size:89 final size:88
Alignment explanation
Indices: 81895049--81895629 Score: 607
Period size: 89 Copynumber: 6.5 Consensus size: 88
81895039 CATGTGACTC
* * * ** * **
81895049 GAGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTGAAAAGTATAAATTGAAAAAACATTAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATTGAGAAAACAGAAA
*
81895114 TTGAAAATACCTCGGCGTGTGATCCT
66 TTGAAAATACCTCAGC--GTG-TCCT
* * * *
81895140 GAGGCTCAATTCACCTCTAGCAATATGAATTAATTTTTGGAAAAACATAAATTAAG-AAAC-GAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT-GAAAAACATAAATTGAGAAAACAGAA
*
81895203 AGTTGACAATACCTCAGCGTGTCCT
65 A-TTGAAAATACCTCAGCGTGTCCT
* * * **
81895228 GAGGCTCAATTCACCTCTAGCAATATGAATTAATTTTTGGAAAAACATAAATCAAG-AAAC-GAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT-GAAAAACATAAATTGAGAAAACAGAA
*
81895291 AGTTGACAATACCTCAGCGTGTCCT
65 A-TTGAAAATACCTCAGCGTGTCCT
* * ** ** * *
81895316 GAGGCTCAACTCACCTTTCGCGATATGAGTTTTTTTTTTTTTGAAAGGCAGAAATTG-GAAAGCA
1 GAGGCTCAACTCACCTCTCGCAATATGAG----TTAATTTTTGAAAAACATAAATTGAGAAAACA
* *
81895380 AAAATTGAAAATACCTCAGCGTGCCCT
62 GAAATTGAAAATACCTCAGCGTGTCCT
* * * * * *
81895407 GAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTTTGAAGAGCAGAAATTG-GAAAGCAGA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGAAAAACATAAATTGAGAAAACAGA
* *
81895471 AATCGAAAATACCTCAGCGTGCCCT
64 AATTGAAAATACCTCAGCGTGTCCT
* *
81895496 GAGGCTCAACTCACTTCTCGCAATATGAGCTAATTTTTGAAAAACATAAATTGGAGAAAACAGAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATT-GAGAAAACAGAA
* *
81895561 ATTGAAATTACCTCAGCATGTCCT
65 ATTGAAAATACCTCAGCGTGTCCT
*
81895585 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAAC
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
81895630 GGAAATTAAA
Statistics
Matches: 424, Mismatches: 54, Indels: 26
0.84 0.11 0.05
Matches are distributed among these distances:
87 18 0.04
88 117 0.28
89 153 0.36
90 3 0.01
91 110 0.26
92 23 0.05
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (88 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAACATAAATTGAGAAAACAGAAA
TTGAAAATACCTCAGCGTGTCCT
Found at i:81895671 original size:73 final size:74
Alignment explanation
Indices: 81895552--81895700 Score: 210
Period size: 73 Copynumber: 2.0 Consensus size: 74
81895542 TAAATTGGAG
* * *
81895552 AAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
81895617 A-TTTTTGA
66 ATTTTTTGA
* * * * * *
81895625 AAAACGGAAATTAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
81895690 ATTTTTTGA
66 ATTTTTTGA
81895699 AA
1 AA
81895701 CATGGAAATT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
73 58 0.87
74 9 0.13
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTGA
Found at i:81895768 original size:159 final size:159
Alignment explanation
Indices: 81895467--81896014 Score: 687
Period size: 159 Copynumber: 3.4 Consensus size: 159
81895457 AATTGGAAAG
* * * *
81895467 CAGAAATCGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGCT-AATT
1 CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
* * *
81895531 TTTGAAAAACAT-AAATTGGAGAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAAC
66 TTTG--AAACATGAAATT---GAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAAC
81895595 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
126 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
* * * * * *
81895629 CGGAAATTAAAAATACCTCATCGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
* *
81895694 TTTGAAACATGGAAATT-AAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCAC
66 TTTGAAACAT-GAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCAC
*
81895758 CTCTCGCAATATGAGTTGATTTTTGACAAA
130 CTCTCGCAATATGAGTTGATTTTTGAAAAA
* ** *
81895788 CAGCAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
* ** * *
81895853 TTTGAAAGACA-GAAATTGAAAGGC-TTAATTGAAAATACCTCGGCGTGTGACCTGAGGTTCAAC
66 TTTG-AA-ACATGAAATTGAAA-ACAGAAATTGAAAATACCTCAGC--GTGACCTGAGGCTCAAC
**
81895916 TCACCTCTCGCAATATGAGTTGA-AATT-AAAACA
126 TCACCTCTCGCAATATGAGTTGATTTTTGAAAA-A
*
81895949 CAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
1 CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
81896014 T
66 T
81896015 GAAAAAGTAG
Statistics
Matches: 338, Mismatches: 38, Indels: 21
0.85 0.10 0.05
Matches are distributed among these distances:
159 137 0.41
160 24 0.07
161 74 0.22
162 91 0.27
163 12 0.04
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (159 bp):
CAGAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTGAAACATGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTGAAAAA
Found at i:81895836 original size:73 final size:73
Alignment explanation
Indices: 81895711--81895873 Score: 256
Period size: 73 Copynumber: 2.2 Consensus size: 73
81895701 CATGGAAATT
*
81895711 AAAACAGAAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
81895776 A-TTTTTG
66 ATTTTTTG
* * **
81895783 ACAAACAGCAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
81895848 GATTTTTTG
65 GATTTTTTG
81895857 AAAGACAGAAATTGAAA
1 AAA-ACAGAAATTGAAA
81895874 GGCTTAATTG
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
72 1 0.01
73 62 0.76
74 19 0.23
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAACGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:81895957 original size:87 final size:86
Alignment explanation
Indices: 81895792--81895960 Score: 205
Period size: 89 Copynumber: 1.9 Consensus size: 86
81895782 GACAAACAGC
* ** ** *
81895792 AATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTG
1 AATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TAATTA
* *
81895857 AAAGACAGAAATTGAAAGGCTT
65 AAACACAAAAATTGAAAGGCTT
* * *
81895879 AATTGAAAATACCTCGGCGTGTGACCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGA-AATT
1 AATTGAAAATACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATT
81895943 AAAACACAAAAATTGAAA
64 AAAACACAAAAATTGAAA
81895961 ATACCTCAGC
Statistics
Matches: 69, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 34 0.49
89 35 0.51
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (86 bp):
AATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATAATTAA
AACACAAAAATTGAAAGGCTT
Found at i:81896129 original size:73 final size:72
Alignment explanation
Indices: 81896037--81896229 Score: 280
Period size: 75 Copynumber: 2.6 Consensus size: 72
81896027 ATTAAAAGGT
* * * *
81896037 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAAAATACCTCAGCGTGC
81896102 CCTGAGGC
65 CCTGAGGC
*
81896110 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAGCAGAAATTGAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAA-AACAGAAATTGAAAATACCTCAGCGT
81896175 GCCCTGAGGC
63 GCCCTGAGGC
*
81896185 TCAACTCACCTCCCGCAATATGAGTTGAATTTTTG-AAACAGAAAT
1 TCAACTCACCTCTCGCAATATGAGTTG-ATTTTTGAAAACAGAAAT
81896230 AAAAGCATCA
Statistics
Matches: 109, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
72 8 0.07
73 28 0.26
74 7 0.06
75 65 0.60
76 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAAATACCTCAGCGTGCC
CTGAGGC
Found at i:81896132 original size:127 final size:126
Alignment explanation
Indices: 81895907--81896141 Score: 364
Period size: 127 Copynumber: 1.9 Consensus size: 126
81895897 GTGTGACCTG
*
81895907 AGGTTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
1 AGGTTCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
81895972 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
** * * *
81896033 AGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAA-ACAGAAATTGAAATTACCTCAG
1 AGGTTCAACCCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTCAG
* * *
81896097 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
64 CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
81896142 TTTGAAGAGC
Statistics
Matches: 98, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
126 31 0.32
127 64 0.65
128 3 0.03
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (126 bp):
AGGTTCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
Found at i:81902468 original size:2 final size:2
Alignment explanation
Indices: 81902463--81902493 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
81902453 TATATGTAAA
*
81902463 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
81902494 AATAGTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:81902661 original size:22 final size:23
Alignment explanation
Indices: 81902635--81902699 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
81902625 TATTGAAAAT
81902635 ACATATTCATAATATATA-TAAA
1 ACATATTCATAATATATATTAAA
*
81902657 GCATATAT-ATAATATAATATTAAA
1 ACATAT-TCATAATAT-ATATTAAA
*
81902681 ACATTTTACATAATATATA
1 ACATATT-CATAATATATA
81902700 CACATATAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
22 12 0.34
23 5 0.14
24 11 0.31
25 7 0.20
ACGTcount: A:0.52, C:0.08, G:0.02, T:0.38
Consensus pattern (23 bp):
ACATATTCATAATATATATTAAA
Found at i:81903161 original size:25 final size:24
Alignment explanation
Indices: 81903114--81903161 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
81903104 AAAATAAGCC
* *
81903114 TATACGTAAATATATATATACATA
1 TATACGTAAACATATATAAACATA
81903138 TATACGTAAAACATATATAAACAT
1 TATACGT-AAACATATATAAACAT
81903162 TGGTGATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.33
Consensus pattern (24 bp):
TATACGTAAACATATATAAACATA
Found at i:81903293 original size:3 final size:3
Alignment explanation
Indices: 81903285--81903368 Score: 152
Period size: 3 Copynumber: 28.0 Consensus size: 3
81903275 ACAAAAGCAC
81903285 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
81903333 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATCA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
81903369 TGAAAATAAC
Statistics
Matches: 79, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.03
3 75 0.95
4 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:81906625 original size:20 final size:20
Alignment explanation
Indices: 81906600--81906651 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
81906590 GTTGGTTATT
*
81906600 GTAATT-ATGAATGTAGGGAA
1 GTAATTGATGAATAT-GGGAA
81906620 GTAATTGATGAATATGGGAA
1 GTAATTGATGAATATGGGAA
* *
81906640 GGAATTGGTGAA
1 GTAATTGATGAA
81906652 GTTGGGTGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.38, C:0.00, G:0.33, T:0.29
Consensus pattern (20 bp):
GTAATTGATGAATATGGGAA
Found at i:81910103 original size:17 final size:16
Alignment explanation
Indices: 81910081--81910123 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
81910071 ACCCAAACAA
*
81910081 CAATAACCCATTCAGCC
1 CAATAACCCA-ACAGCC
81910098 CAATAACCCCAACAGCC
1 CAATAA-CCCAACAGCC
81910115 CAA-AACCCA
1 CAATAACCCA
81910124 GTAATTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
15 4 0.17
16 2 0.08
17 14 0.58
18 4 0.17
ACGTcount: A:0.42, C:0.44, G:0.05, T:0.09
Consensus pattern (16 bp):
CAATAACCCAACAGCC
Found at i:81910705 original size:12 final size:12
Alignment explanation
Indices: 81910677--81910710 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
81910667 CAAAAAATAC
*
81910677 AATAAAATAACAG
1 AATAAAA-AAAAG
81910690 AATAAAAAAAAG
1 AATAAAAAAAAG
81910702 AATAAAAAA
1 AATAAAAAA
81910711 TAAATTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.12
Consensus pattern (12 bp):
AATAAAAAAAAG
Found at i:81910831 original size:19 final size:20
Alignment explanation
Indices: 81910809--81910852 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
81910799 TGACCGGAGC
81910809 TTCCCC-CTCCCTCTCTTCT
1 TTCCCCGCTCCCTCTCTTCT
* *
81910828 TTCCCCGTTCCCTCTTTTCT
1 TTCCCCGCTCCCTCTCTTCT
*
81910848 CTCCC
1 TTCCC
81910853 TCCTTTTCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.00, C:0.55, G:0.02, T:0.43
Consensus pattern (20 bp):
TTCCCCGCTCCCTCTCTTCT
Found at i:81924296 original size:71 final size:71
Alignment explanation
Indices: 81924175--81924308 Score: 214
Period size: 71 Copynumber: 1.9 Consensus size: 71
81924165 GTTTTCCAAG
* * *
81924175 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
81924240 GTTTCA
66 GTTTCA
* * *
81924246 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTT
81924309 CTGCTTTTTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 57 1.00
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:81924348 original size:160 final size:160
Alignment explanation
Indices: 81924084--81924616 Score: 882
Period size: 160 Copynumber: 3.4 Consensus size: 160
81924074 TTGTTTTTTC
81924084 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
81924149 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
81924214 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
81924244 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
81924309 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
81924374 GACACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
81924404 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
1 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
*
81924469 CTGC--TTT--TT-A-G--TT-C------ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
66 CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
81924519 GGCACGTTGAGGTAATTTCAATTTATGTTT
131 GACACGTTGAGGTAATTTCAATTTATGTTT
* *
81924549 CAAAAATCAACTCATAATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGGTAATTTCA
1 CAAAAATCAACTCAT-AT-T-GCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGA-GGTATTTTCA
81924613 ATTT
62 ATTT
81924617 TTATTAAATC
Statistics
Matches: 365, Mismatches: 4, Indels: 20
0.94 0.01 0.05
Matches are distributed among these distances:
145 79 0.22
146 2 0.01
147 12 0.03
148 33 0.09
151 1 0.00
152 2 0.01
154 1 0.00
155 1 0.00
156 2 0.01
158 3 0.01
160 229 0.63
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (160 bp):
CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTT
CTGCTTTTTAATTCATGTTTTCCAAGAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAA
GACACGTTGAGGTAATTTCAATTTATGTTT
Found at i:81924514 original size:74 final size:69
Alignment explanation
Indices: 81924337--81924731 Score: 389
Period size: 74 Copynumber: 5.4 Consensus size: 69
81924327 TTTCCAAGAA
* * * * *
81924337 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTAATTTCAATTT-TTT
* *
81924402 TTCAAA
64 TTTAAT
* *
81924408 AATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTAATTTCAATTT-T--
*
81924473 TTTTTAGTT
62 TTTTTA-AT
* * * *
81924482 CATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATTTCAATTTATGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTAATTTCAATTT-TTT
* *
81924547 TTCAAA
64 TTTAAT
* *
81924553 AATCAACTCATAATATCGCGAGAAGTGAGTTGAACCTCGGGCACGCTGAGGGTAATTTCAATTTT
1 AATCAACTCAT-AT-T-GCGAGAGGTGAGTTGAGCCTCGGGCACGCTGA-GGTAATTTCAATTTT
81924618 TATTAAATCTAA-
62 T-TT---T-TAAT
* *
81924630 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-GGCAGCCCGCTGAGGTATTTTCAATTTTTT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GCACGCTGAGGTAATTTCAATTTTTT
81924694 TTTAAT
64 TTTAAT
*
81924700 CATTTCAACTCATATTGCGAGAGGTGAGTTGA
1 -A-ATCAACTCATATTGCGAGAGGTGAGTTGA
81924732 ACCTTTTAAT
Statistics
Matches: 274, Mismatches: 33, Indels: 33
0.81 0.10 0.10
Matches are distributed among these distances:
69 3 0.01
70 1 0.00
71 67 0.24
72 34 0.12
73 19 0.07
74 125 0.46
75 9 0.03
76 2 0.01
77 12 0.04
78 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (69 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTAATTTCAATTTTTTTT
TAAT
Found at i:81924678 original size:148 final size:145
Alignment explanation
Indices: 81924335--81924735 Score: 510
Period size: 148 Copynumber: 2.7 Consensus size: 145
81924325 GTTTTCCAAG
*
81924335 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-CACGTTGAGGTAATTTCAATTTAT
* *
81924400 GTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCA
65 GTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTAATTTCA
* * *
81924465 ATTTCTGCTTTTTAGTT
130 ATTTCT-CTATTAAATT
*
81924482 --CATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA-GCACGTTGAGGTAATTTCAATTTAT
81924545 GTTTCAAAAATCAACTCATAATATCGCGAGAAGTGAGTTGAACCTC-GGGCACGCTGAGGGTAAT
65 GTTTCAAAAATCAACTCAT-AT-T-GCGAGAAGTGAGTTGAACCTCAGGGCACGCTGA-GGTAAT
81924609 TTCAATTT-T-TATTAAATCT
126 TTCAATTTCTCTATTAAAT-T
* * *
81924628 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTGGC-AGCCCGCTGAGGTATTTTCAATTT-
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT--CAAGCACGTTGAGGTAATTTCAATTTA
* * ** *
81924691 TTTTTTAATCATTTCAACTCATATTGCGAGAGGTGAGTTGAACCT
64 TGTTTCAA--AAATCAACTCATATTGCGAGAAGTGAGTTGAACCT
81924736 TTTAATTTCT
Statistics
Matches: 226, Mismatches: 16, Indels: 25
0.85 0.06 0.09
Matches are distributed among these distances:
145 83 0.37
146 23 0.10
147 20 0.09
148 88 0.39
149 11 0.05
150 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (145 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGCACGTTGAGGTAATTTCAATTTATG
TTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCAGGGCACGCTGAGGTAATTTCAA
TTTCTCTATTAAATT
Found at i:81924977 original size:58 final size:59
Alignment explanation
Indices: 81924890--81925014 Score: 166
Period size: 57 Copynumber: 2.1 Consensus size: 59
81924880 TTCTTATACT
* *
81924890 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTGGTTCACATG-TCGAGGTA
1 TTTTCAAAATCAACT-ATATTGCGAGAGGTGAGTTGAGCC-TTGGCTCACATGCT-GAGCTA
* *
81924951 TTTTCAAAATCTACT-T-TTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTA
1 TTTTCAAAATCAACTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGCTA
81925008 TTTTCAA
1 TTTTCAA
81925015 TTTCTGTTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
57 22 0.37
58 22 0.37
59 1 0.02
61 14 0.24
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (59 bp):
TTTTCAAAATCAACTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACATGCTGAGCTA
Found at i:81925597 original size:16 final size:17
Alignment explanation
Indices: 81925567--81925598 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81925557 ATAAAGTCAT
81925567 CAGCCCAATAACCCAAA
1 CAGCCCAATAACCCAAA
81925584 CAGCCCAA-AACCCAA
1 CAGCCCAATAACCCAA
81925599 TAATTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.47, C:0.44, G:0.06, T:0.03
Consensus pattern (17 bp):
CAGCCCAATAACCCAAA
Found at i:81926185 original size:12 final size:12
Alignment explanation
Indices: 81926157--81926195 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
81926147 CAAAAAATAC
*
81926157 AATAAAATAACAG
1 AATAAAA-AAAAG
81926170 AATAAAAAAAAG
1 AATAAAAAAAAG
81926182 AATAAAAAATAAG
1 AATAAAAAA-AAG
81926195 A
1 A
81926196 TTTTTTTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.13
Consensus pattern (12 bp):
AATAAAAAAAAG
Found at i:81926998 original size:18 final size:18
Alignment explanation
Indices: 81926971--81927008 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
81926961 CATATTTCAA
*
81926971 TACTATTATT-ATACTTAT
1 TACTAATATTGATAC-TAT
81926989 TACTAATATTGATACTAT
1 TACTAATATTGATACTAT
81927007 TA
1 TA
81927009 TATGTATGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.50
Consensus pattern (18 bp):
TACTAATATTGATACTAT
Found at i:81929834 original size:29 final size:29
Alignment explanation
Indices: 81929792--81929874 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 29
81929782 TATGAAACAC
* *
81929792 AATTCAAGTTTCATGTATATAATTGCAC-TA
1 AATTAAAG-TTCATGTATA-AATTACACATA
81929822 AATTAAAGTTCATGTATCAAATTACACATTA
1 AATTAAAGTTCATGTAT-AAATTACACA-TA
* *
81929853 GACTAAAGTTCATGTATAAATT
1 AATTAAAGTTCATGTATAAATT
81929875 TACTATTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
29 16 0.35
30 13 0.28
31 17 0.37
ACGTcount: A:0.41, C:0.12, G:0.10, T:0.37
Consensus pattern (29 bp):
AATTAAAGTTCATGTATAAATTACACATA
Found at i:81932260 original size:17 final size:17
Alignment explanation
Indices: 81932225--81932257 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81932215 GGGATGATTT
*
81932225 TTTTAAAACTGTTAAAA
1 TTTTAAAACTATTAAAA
81932242 TTTTAAAA-TATTAAAA
1 TTTTAAAACTATTAAAA
81932258 ATTATTTGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (17 bp):
TTTTAAAACTATTAAAA
Found at i:81932478 original size:29 final size:29
Alignment explanation
Indices: 81932445--81932504 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
81932435 TTCTACTAGC
81932445 AAAAGTTACATTAAACCGACTGATCAACT
1 AAAAGTTACATTAAACCGACTGATCAACT
81932474 AAAAGTTACATTAAACCGACTGATCAACT
1 AAAAGTTACATTAAACCGACTGATCAACT
81932503 AA
1 AA
81932505 GTGAATTCAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.47, C:0.20, G:0.10, T:0.23
Consensus pattern (29 bp):
AAAAGTTACATTAAACCGACTGATCAACT
Found at i:81932600 original size:2 final size:2
Alignment explanation
Indices: 81932593--81932637 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
81932583 GTCTAGTTTT
81932593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81932635 TA T
1 TA T
81932638 GTAATAATCA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:81933839 original size:14 final size:15
Alignment explanation
Indices: 81933813--81933853 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
81933803 ATGGGATGAA
*
81933813 AATAAATTTTTAATT
1 AATAAAATTTTAATT
81933828 AA-AAAATTTTAATT
1 AATAAAATTTTAATT
81933842 AATTAAAATTTT
1 AA-TAAAATTTT
81933854 CAAACCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 13 0.57
15 2 0.09
16 8 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AATAAAATTTTAATT
Found at i:81935536 original size:40 final size:40
Alignment explanation
Indices: 81935491--81935658 Score: 160
Period size: 40 Copynumber: 4.2 Consensus size: 40
81935481 CGGAATATAA
81935491 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
81935531 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
81935571 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
81935611 CCGGATATAATTTCCAGCATAATTGTCTTCGGGAT-TTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGG-TCTTAGC
81935651 CCGGATAT
1 CCGGATAT
81935659 CATTCAATTT
Statistics
Matches: 103, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
39 1 0.01
40 101 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.27
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:81935641 original size:80 final size:80
Alignment explanation
Indices: 81935507--81935656 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
81935497 ATAATCACGT
*
81935507 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
81935571 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * * *
81935587 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
81935650 CCCGGAT
64 CCCGGAT
81935657 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:81947151 original size:14 final size:14
Alignment explanation
Indices: 81947134--81947160 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81947124 TGTTGAATTA
81947134 AAAATTAAAATTTT
1 AAAATTAAAATTTT
81947148 AAAATTAAAATTT
1 AAAATTAAAATTT
81947161 GTTTACAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATTAAAATTTT
Found at i:81947419 original size:19 final size:19
Alignment explanation
Indices: 81947390--81947446 Score: 66
Period size: 18 Copynumber: 3.1 Consensus size: 19
81947380 TTTTAAAAAA
81947390 TATAAAT-TTTTGAATTTT
1 TATAAATATTTTGAATTTT
*
81947408 TATAAATATTTTGGA-TTT
1 TATAAATATTTTGAATTTT
81947426 TA-AAATTATTTTGAACTTTT
1 TATAAA-TATTTTGAA-TTTT
81947446 T
1 T
81947447 GAATTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 3 0.09
18 20 0.61
19 6 0.18
20 4 0.12
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:81948148 original size:10 final size:10
Alignment explanation
Indices: 81948133--81948249 Score: 67
Period size: 9 Copynumber: 12.5 Consensus size: 10
81948123 GTTTCTCATT
81948133 TATTTTATAA
1 TATTTTATAA
*
81948143 TATTTTAAATTTA
1 TATTTT--A-TAA
81948156 TATTTTA-AA
1 TATTTTATAA
81948165 TATTTTATAA
1 TATTTTATAA
*
81948175 TA-TTTAT-C
1 TATTTTATAA
*
81948183 TA-TTCA-AA
1 TATTTTATAA
*
81948191 CATTTTA-AA
1 TATTTTATAA
* *
81948200 -ATTTTTTAT
1 TATTTTATAA
81948209 TA-TTTAT--
1 TATTTTATAA
81948216 TATTTTATAA
1 TATTTTATAA
81948226 TATTTTA-AA
1 TATTTTATAA
*
81948235 TGTTTTATAA
1 TATTTTATAA
81948245 TATTT
1 TATTT
81948250 ATTTATTCAA
Statistics
Matches: 83, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
7 2 0.02
8 16 0.19
9 31 0.37
10 24 0.29
11 1 0.01
12 1 0.01
13 8 0.10
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (10 bp):
TATTTTATAA
Found at i:81948266 original size:35 final size:34
Alignment explanation
Indices: 81948157--81948266 Score: 125
Period size: 35 Copynumber: 3.1 Consensus size: 34
81948147 TTAAATTTAT
*
81948157 ATTTTAAATATTTTATAATATTTATCTATTCAAAC
1 ATTTTAAAT-TTTTATAATATTTATTTATTCAAAC
* * *
81948192 ATTTTAAAATTTTT-TATTATTTA-TTATTTTATAAT
1 ATTTT-AAATTTTTATAATATTTATTTA-TTCA-AAC
81948227 ATTTTAAATGTTTTATAATATTTATTTATTCAAAC
1 ATTTTAAAT-TTTTATAATATTTATTTATTCAAAC
81948262 ATTTT
1 ATTTT
81948267 TTTAATTATA
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
33 2 0.03
34 15 0.24
35 27 0.44
36 15 0.24
37 3 0.05
ACGTcount: A:0.36, C:0.05, G:0.01, T:0.58
Consensus pattern (34 bp):
ATTTTAAATTTTTATAATATTTATTTATTCAAAC
Found at i:81948468 original size:83 final size:82
Alignment explanation
Indices: 81948359--81948520 Score: 261
Period size: 83 Copynumber: 2.0 Consensus size: 82
81948349 ATAAATATAA
* * * *
81948359 TTAAAAAACTTTGAATAAAAAAATATTATAAAATATTTAAAATATAAATTTAAATTATTATAAAA
1 TTAAAAAACTTTCAATAAAAAAATATTATAAAACATTTAAAATATAAATATAAAATATTATAAAA
81948424 CAAATAATAAACAATTT
66 CAAATAATAAACAATTT
* *
81948441 TTAAAAAACTTTTCAATAAACATATATTATAAAACATTTAAAATATAAATATAAAATATTATAAA
1 TTAAAAAAC-TTTCAATAAAAAAATATTATAAAACATTTAAAATATAAATATAAAATATTATAAA
81948506 ACAAATAATAAACAA
65 ACAAATAATAAACAA
81948521 ATAAAAAATA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
82 9 0.12
83 64 0.88
ACGTcount: A:0.60, C:0.06, G:0.01, T:0.33
Consensus pattern (82 bp):
TTAAAAAACTTTCAATAAAAAAATATTATAAAACATTTAAAATATAAATATAAAATATTATAAAA
CAAATAATAAACAATTT
Found at i:81948523 original size:32 final size:32
Alignment explanation
Indices: 81948455--81948530 Score: 82
Period size: 32 Copynumber: 2.3 Consensus size: 32
81948445 AAAACTTTTC
* ** *
81948455 AATAAACATATATTATAAAACATTTAAAATATA
1 AATAAA-AAATATTATAAAACAAATAAAATACA
*
81948488 AATATAAAATATTATAAAACAAATAATAA-ACA
1 AATAAAAAATATTATAAAACAAATAA-AATACA
81948520 AATAAAAAATA
1 AATAAAAAATA
81948531 GAAAAAGGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
32 29 0.81
33 7 0.19
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (32 bp):
AATAAAAAATATTATAAAACAAATAAAATACA
Found at i:81950329 original size:2 final size:2
Alignment explanation
Indices: 81950316--81950350 Score: 52
Period size: 2 Copynumber: 16.5 Consensus size: 2
81950306 TTATTGAGCT
81950316 TA TA TA TGA TA TA TA TA TA TA TA TA TA TA TCA TA T
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA T
81950351 TGACCCATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 27 0.87
3 4 0.13
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:81957433 original size:15 final size:15
Alignment explanation
Indices: 81957402--81957451 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
81957392 AATAGATTAG
81957402 TAAAATAAAAATAAA
1 TAAAATAAAAATAAA
*
81957417 TAATATAACAAAT-AA
1 TAAAATAA-AAATAAA
81957432 TAAAAT-AAAATAAAA
1 TAAAATAAAAAT-AAA
81957447 TAAAA
1 TAAAA
81957452 CTAAGAAAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
13 4 0.13
14 1 0.03
15 21 0.70
16 4 0.13
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAAATAAAAATAAA
Found at i:81957451 original size:5 final size:5
Alignment explanation
Indices: 81957402--81957451 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
81957392 AATAGATTAG
* *
81957402 TAAAA TAAAA -ATAAA TAATA TAACAA -ATAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TA-AAA TAAAA TAA-AA TAAAA TAAAA TAAAA TAAAA TAAAA
81957452 CTAAGAAAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
4 3 0.08
5 32 0.86
6 2 0.05
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAA
Found at i:81957460 original size:24 final size:24
Alignment explanation
Indices: 81957409--81957460 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
81957399 TAGTAAAATA
* *
81957409 AAAATAAATAATATAACAAATAAT
1 AAAATAAATAAAATAACAAATAAG
*
81957433 AAAATAAAATAAAATAA-AACTAAG
1 AAAAT-AAATAAAATAACAAATAAG
81957457 AAAA
1 AAAA
81957461 GGATAAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 14 0.58
25 10 0.42
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.19
Consensus pattern (24 bp):
AAAATAAATAAAATAACAAATAAG
Found at i:81964476 original size:23 final size:22
Alignment explanation
Indices: 81964449--81964494 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
81964439 TTATTTATCA
81964449 CTTTAAATAAT-AATAATAAAAAC
1 CTTTAAAT-ATCAAT-ATAAAAAC
*
81964472 CTTTAAGTATCAATATAAAAAC
1 CTTTAAATATCAATATAAAAAC
81964494 C
1 C
81964495 AGGAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.54, C:0.13, G:0.02, T:0.30
Consensus pattern (22 bp):
CTTTAAATATCAATATAAAAAC
Found at i:81969554 original size:204 final size:205
Alignment explanation
Indices: 81969184--81969584 Score: 538
Period size: 204 Copynumber: 2.0 Consensus size: 205
81969174 GTGTTAAAGT
** * ** *
81969184 TGCGAGCTTAACTCTGTGAGCTTTTATAATATCAGCTAGGAGTGTAGGTCCGCTGGCTGCTTTGG
1 TGCGAGCTTAACTCTACGAGCTTTTATAATATCAGCTAGGAGTGTAGGTCCACTAACTGCTTTAG
* * *** * * *
81969249 AGGTTACGATCTTAAATCGGTAACCCTTTATGTCATCAGCTGGGAGTGTAGGTCCACTAGCTGTG
66 AGGTTACAATCTTAAACCAAAAAACCTTTATGACATCAGCTGAGAGTGTAGGTCCACTAGCTGTG
* * *
81969314 TTGGAGCTGCAAGCTTAACTCTGTGAGCTTTTATAATGTCAGCTGGGAGCGTAGGTCCGCTAGTT
131 TTGGAGCTGCAAGCTTAACTCTATGAGCTCTTATAATGTCAGCTGAGAGCGTAGGTCCGCTAGTT
81969379 GTAGTGGAGC
196 GTAGTGGAGC
* *
81969389 TGCGAG-TTAACTCTACGAG-TTCTTATAATGTCAGCTAGGAGTGTAGGTCTACTAACTGCTTTA
1 TGCGAGCTTAACTCTACGAGCTT-TTATAATATCAGCTAGGAGTGTAGGTCCACTAACTGCTTTA
* * * *
81969452 GAGGTTGCAATCTTAAACCAAAAAACCTTTATGAGATCAGCTGAGAGTGTAGGTCTACTAGTTGT
65 GAGGTTACAATCTTAAACCAAAAAACCTTTATGACATCAGCTGAGAGTGTAGGTCCACTAGCTGT
* *
81969517 GTTGGAGCTGCGAA-CTTAACTCTATGAGCTCTTATAATGTCAGCTGAGAGCTTAGGTCTGCTAG
130 GTTGGAGCTGC-AAGCTTAACTCTATGAGCTCTTATAATGTCAGCTGAGAGCGTAGGTCCGCTAG
81969581 TTGT
194 TTGT
81969585 GTTCCATCAT
Statistics
Matches: 169, Mismatches: 25, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
203 2 0.01
204 159 0.94
205 8 0.05
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (205 bp):
TGCGAGCTTAACTCTACGAGCTTTTATAATATCAGCTAGGAGTGTAGGTCCACTAACTGCTTTAG
AGGTTACAATCTTAAACCAAAAAACCTTTATGACATCAGCTGAGAGTGTAGGTCCACTAGCTGTG
TTGGAGCTGCAAGCTTAACTCTATGAGCTCTTATAATGTCAGCTGAGAGCGTAGGTCCGCTAGTT
GTAGTGGAGC
Found at i:81969566 original size:68 final size:68
Alignment explanation
Indices: 81969284--81969587 Score: 257
Period size: 68 Copynumber: 4.5 Consensus size: 68
81969274 CTTTATGTCA
* * * * *
81969284 TCAGCTGGGAGTGTAGGTCCACTAGCTGTGTTGGAGCTGCAAGCTTAACTCTGTGAGCTTTTATA
1 TCAGCTGAGAGTGTAGGTCTACTAGTTGTGTTGGAGCTGCAAGCTTAACTCTATGAGCTCTTATA
81969349 ATG
66 ATG
* * ** * * *
81969352 TCAGCTGGGAGCGTAGGTCCGCTAGTTGTAG-TGGAGCTGCGAG-TTAACTCTACGAGTTCTTAT
1 TCAGCTGAGAGTGTAGGTCTACTAGTTGT-GTTGGAGCTGCAAGCTTAACTCTATGAGCTCTTAT
81969415 AATG
65 AATG
** * * * * ** *
81969419 TCAGCT-AGGAGTGTAGGTCTACTAACTGCT-TTAGAGGTTGCAATCTTAAAC-CAAAAAAC-CT
1 TCAGCTGA-GAGTGTAGGTCTACTAGTTG-TGTTGGA-GCTGCAAGCTT-AACTCTATGAGCTC-
*
81969480 TTATGA-G
61 TTATAATG
81969487 ATCAGCTGAGAGTGTAGGTCTACTAGTTGTGTTGGAGCTGCGAA-CTTAACTCTATGAGCTCTTA
1 -TCAGCTGAGAGTGTAGGTCTACTAGTTGTGTTGGAGCTGC-AAGCTTAACTCTATGAGCTCTTA
81969551 TAATG
64 TAATG
*
81969556 TCAGCTGAGAGCT-TAGGTCTGCTAGTTGTGTT
1 TCAGCTGAGAG-TGTAGGTCTACTAGTTGTGTT
81969588 CCATCATTGC
Statistics
Matches: 186, Mismatches: 34, Indels: 32
0.74 0.13 0.13
Matches are distributed among these distances:
67 47 0.25
68 91 0.49
69 44 0.24
70 4 0.02
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (68 bp):
TCAGCTGAGAGTGTAGGTCTACTAGTTGTGTTGGAGCTGCAAGCTTAACTCTATGAGCTCTTATA
ATG
Found at i:81971279 original size:32 final size:32
Alignment explanation
Indices: 81971238--81971342 Score: 174
Period size: 32 Copynumber: 3.3 Consensus size: 32
81971228 TTTTTTTTTC
81971238 ACATGATTTTAGGAGTAAGTTAAGTGTTTGTG
1 ACATGATTTTAGGAGTAAGTTAAGTGTTTGTG
81971270 ACATGATTTTAGGAGTAAGTTAAGTGTTTGTG
1 ACATGATTTTAGGAGTAAGTTAAGTGTTTGTG
* * *
81971302 ACATGATTTTAGAAGTTAGTTAAATGTTTGTG
1 ACATGATTTTAGGAGTAAGTTAAGTGTTTGTG
*
81971334 GCATGATTT
1 ACATGATTT
81971343 CAAGTAAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 69 1.00
ACGTcount: A:0.29, C:0.04, G:0.26, T:0.42
Consensus pattern (32 bp):
ACATGATTTTAGGAGTAAGTTAAGTGTTTGTG
Found at i:81976372 original size:92 final size:93
Alignment explanation
Indices: 81976205--81976373 Score: 234
Period size: 93 Copynumber: 1.8 Consensus size: 93
81976195 GATTGGAAAG
* *
81976205 GAAATATTTTCGATTTTTTAAGAAAACTTTTGGGTTTTTTTGCTAAAGATCAAAAGCCAGAGAAA
1 GAAATATTTTCAATTTTTTAAGAAAACTCTTGGGTTTTTTTGCTAAAGATCAAAAGCCAGAGAAA
**
81976270 ACTTTTTATTTTGTTAACATTGCTTTCA
66 AAATTTTATTTTGTTAACATTGCTTTCA
* * * * *
81976298 GAAATCTTTTCAATTTTTTAAGAAAA-TGCTTGGGTTTTTTT-TTTAATATCAAAAGCTAGAGAA
1 GAAATATTTTCAATTTTTTAAGAAAACT-CTTGGGTTTTTTTGCTAAAGATCAAAAGCCAGAGAA
81976361 AAAATTTTATTTT
65 AAAATTTTATTTT
81976374 ATTGAAATTG
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
92 30 0.45
93 36 0.55
ACGTcount: A:0.34, C:0.09, G:0.13, T:0.44
Consensus pattern (93 bp):
GAAATATTTTCAATTTTTTAAGAAAACTCTTGGGTTTTTTTGCTAAAGATCAAAAGCCAGAGAAA
AAATTTTATTTTGTTAACATTGCTTTCA
Found at i:81977081 original size:4 final size:4
Alignment explanation
Indices: 81977061--81977304 Score: 113
Period size: 4 Copynumber: 61.2 Consensus size: 4
81977051 ATTCTATCTT
* * * *
81977061 TATG TATG TCTG TTATG TATG TATAT TATG CATG TTATG TATAT TAT-
1 TATG TATG TATG -TATG TATG TAT-G TATG TATG -TATG TAT-G TATG
* * *
81977108 TAT- TATG TATG TATG TATG TTATG T-GG TATAT TAT- TCT- TATG TATG
1 TATG TATG TATG TATG TATG -TATG TATG TAT-G TATG TATG TATG TATG
* * * *
81977154 TATAT TATG TATG T-TA TATT TAT- TACTG T-T- TATA TATG TATG TATG
1 TAT-G TATG TATG TATG TATG TATG TA-TG TATG TATG TATG TATG TATG
* * *
81977200 TTATG T-T- TAATG TATG TATAT TATG TATG TTATG TATA T-TAC TAT-
1 -TATG TATG T-ATG TATG TAT-G TATG TATG -TATG TATG TAT-G TATG
* *
81977245 TATA TATG TCTG TTATG T-TG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG -TATG TATG TATG TATG TATG TATG TATG TATG TATG
81977293 TATG TATG -ATG T
1 TATG TATG TATG T
81977305 TATATGGTAT
Statistics
Matches: 189, Mismatches: 24, Indels: 54
0.71 0.09 0.20
Matches are distributed among these distances:
2 2 0.01
3 29 0.15
4 119 0.63
5 39 0.21
ACGTcount: A:0.26, C:0.02, G:0.18, T:0.54
Consensus pattern (4 bp):
TATG
Found at i:81977090 original size:9 final size:9
Alignment explanation
Indices: 81977078--81977240 Score: 76
Period size: 9 Copynumber: 18.2 Consensus size: 9
81977068 GTCTGTTATG
81977078 TATGTATAT
1 TATGTATAT
* *
81977087 TATGCATGT
1 TATGTATAT
81977096 TATGTATAT
1 TATGTATAT
81977105 TAT-TATTAT
1 TATGTA-TAT
*
81977114 GTATGTAT-G
1 -TATGTATAT
81977123 TATGT-TAT
1 TATGTATAT
*
81977131 GT-GGTATAT
1 -TATGTATAT
*
81977140 TAT-TCTTAT
1 TATGT-ATAT
81977149 GTATGTATAT
1 -TATGTATAT
*
81977159 TATGTATGT
1 TATGTATAT
81977168 TA--TAT-T
1 TATGTATAT
*
81977174 TAT-TACTGT
1 TATGTA-TAT
*
81977183 T-TATATAT
1 TATGTATAT
*
81977191 GTATGTATGT
1 -TATGTATAT
*
81977201 TATGTTTAAT
1 TATGTAT-AT
81977211 GTATGTATAT
1 -TATGTATAT
*
81977221 TATGTATGT
1 TATGTATAT
81977230 TATGTATAT
1 TATGTATAT
81977239 TA
1 TA
81977241 CTATTATATA
Statistics
Matches: 117, Mismatches: 19, Indels: 36
0.68 0.11 0.21
Matches are distributed among these distances:
6 3 0.03
7 6 0.05
8 15 0.13
9 66 0.56
10 18 0.15
11 9 0.08
ACGTcount: A:0.28, C:0.02, G:0.15, T:0.55
Consensus pattern (9 bp):
TATGTATAT
Found at i:81977149 original size:35 final size:34
Alignment explanation
Indices: 81977098--81977205 Score: 112
Period size: 35 Copynumber: 3.0 Consensus size: 34
81977088 ATGCATGTTA
*
81977098 TGTATATTATTATTATGTATGTATGTATGTTATG
1 TGTATATTATTCTTATGTATGTATGTATGTTATG
*
81977132 TGGTATATTATTCTTATGTATGTATATTATG-TATG
1 T-GTATATTATTCTTATGTATGTAT-GTATGTTATG
*
81977167 T-TATATTTATTACTGTTTATATATGTATGTATGTTATG
1 TGTATA-TTATT-C---TTATGTATGTATGTATGTTATG
81977205 T
1 T
81977206 TTAATGTATG
Statistics
Matches: 62, Mismatches: 4, Indels: 12
0.79 0.05 0.15
Matches are distributed among these distances:
33 4 0.06
34 6 0.10
35 28 0.45
36 4 0.06
37 4 0.06
38 16 0.26
ACGTcount: A:0.26, C:0.02, G:0.16, T:0.56
Consensus pattern (34 bp):
TGTATATTATTCTTATGTATGTATGTATGTTATG
Found at i:81977296 original size:81 final size:81
Alignment explanation
Indices: 81977104--81977299 Score: 205
Period size: 81 Copynumber: 2.4 Consensus size: 81
81977094 GTTATGTATA
* * *
81977104 TTAT-TAT-TATGTATGTATGTATGTTATGT-GGTATATTATTCTTATGTATGTATATTATGTAT
1 TTATATATGTATGTATGTATGTATG-TATGTATGTATATTATTCGTATGTATGTATATTATCTAT
81977166 GTTATATTTATTACTGT
65 GTTATATTTATTACTGT
81977183 TTATATATGTATGTATGTTATGT-T-TAATGTATGTATATTA-T-GTATGTTATGTATATTA-CT
1 TTATATATGTATGTATG-TATGTATGT-ATGTATGTATATTATTCGTATG-TATGTATATTATCT
*
81977243 AT-TATATATGTCTGTTA-TGT
63 ATGT-TATAT-T-TATTACTGT
*
81977263 TGTATGTATGTATGTATGTATGTATGTATGTATGTAT
1 T-TATATATGTATGTATGTATGTATGTATGTATGTAT
81977300 GATGTTATAT
Statistics
Matches: 100, Mismatches: 5, Indels: 22
0.79 0.04 0.17
Matches are distributed among these distances:
78 1 0.01
79 17 0.17
80 29 0.29
81 47 0.47
82 6 0.06
ACGTcount: A:0.26, C:0.02, G:0.17, T:0.55
Consensus pattern (81 bp):
TTATATATGTATGTATGTATGTATGTATGTATGTATATTATTCGTATGTATGTATATTATCTATG
TTATATTTATTACTGT
Found at i:81977375 original size:29 final size:30
Alignment explanation
Indices: 81977323--81977379 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
81977313 ATACTACTTT
**
81977323 TATGTATATTATTGTTTATTACTGTTTATG
1 TATGTATATTATTGTTTAGCACTGTTTATG
*
81977353 TATGTATCTTA-TGTTTAGCACTGTTTA
1 TATGTATATTATTGTTTAGCACTGTTTA
81977380 AAATATGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.23, C:0.07, G:0.14, T:0.56
Consensus pattern (30 bp):
TATGTATATTATTGTTTAGCACTGTTTATG
Found at i:81977402 original size:13 final size:13
Alignment explanation
Indices: 81977383--81977429 Score: 62
Period size: 13 Copynumber: 3.7 Consensus size: 13
81977373 CTGTTTAAAA
81977383 TATGTATGTATAT
1 TATGTATGTATAT
*
81977396 CATGTATGTATAT
1 TATGTATGTATAT
81977409 TATAGT-T-TATAT
1 TAT-GTATGTATAT
81977421 TATGTATGT
1 TATGTATGT
81977430 GCAGTGTCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 2 0.07
12 9 0.31
13 16 0.55
14 2 0.07
ACGTcount: A:0.30, C:0.02, G:0.15, T:0.53
Consensus pattern (13 bp):
TATGTATGTATAT
Found at i:81985164 original size:48 final size:48
Alignment explanation
Indices: 81985106--81985277 Score: 222
Period size: 48 Copynumber: 3.6 Consensus size: 48
81985096 ACATCAAAGT
*
81985106 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATCTCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAGGC
* * * * * *
81985155 CTATGCATGTTCCAGACATGTCTTACACTAGC-TCT-TGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAGGC
* * *
81985201 CGATGCATGTCCCAGACATGTCTTACATTGGCTTGTATCTCTCGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAGGC
*
81985249 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
81985278 GACTCTCATA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
46 36 0.35
47 4 0.04
48 59 0.57
49 4 0.04
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATCTCTCGAGGC
Found at i:81985227 original size:94 final size:95
Alignment explanation
Indices: 81985106--81985277 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 95
81985096 ACATCAAAGT
*
81985106 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATCTCTCGAGGCCTATGCATGTTCC-AG
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATCTCTCGAGGCCGATGCATG-TCCTAG
81985170 ACATGTCTTACACTAGCTCTTGTCTCAATGC
65 ACATGTCTTACACTAGCTCTTGTCTCAATGC
* * * *
81985201 CGATG-CATGTCCCAGACATGTCTTACATTGGCTTGTATCTCTCGAGGTCGATGCATGTCCTAGA
1 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATCTCTCGAGGCCGATGCATGTCCTAGA
81985265 CATGTCTTACACT
66 CATGTCTTACACT
81985278 GACTCTCATA
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
93 3 0.04
94 63 0.89
95 5 0.07
ACGTcount: A:0.21, C:0.28, G:0.20, T:0.31
Consensus pattern (95 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATCTCTCGAGGCCGATGCATGTCCTAGA
CATGTCTTACACTAGCTCTTGTCTCAATGC
Found at i:81985299 original size:94 final size:92
Alignment explanation
Indices: 81985064--81985326 Score: 257
Period size: 94 Copynumber: 2.8 Consensus size: 92
81985054 ATGCCGACGT
* * * * *
81985064 CATGTCCCAGACATAGTCTTACACTGGCTAGC-ACATCAAAGTCGATGCCATGTCCCAGACAGGT
1 CATGTTCCAGACAT-GTCTTACACTAGCT--CTTC-TCAATGTCGATG-CATGTCCCAGACATGT
*
81985128 CTTACACTAGCTTGTATCTCTCGAGGCCTATG
61 CTTACACTAGCTTGTATCTCTCGAGGCCGATG
*
81985160 CATGTTCCAGACATGTCTTACACTAGCTCTTGTCTCAATGCCGATGCATGTCCCAGACATGTCTT
1 CATGTTCCAGACATGTCTTACACTAGCTC-T-TCTCAATGTCGATGCATGTCCCAGACATGTCTT
* * *
81985225 ACATTGGCTTGTATCTCTCGAGGTCGATG
64 ACACTAGCTTGTATCTCTCGAGGCCGATG
*
81985254 CATG-TCCTAGACATGTCTTACACT-GACTC-TCAT-AATGTGGTCGATGCATGCCCCAGACATG
1 CATGTTCC-AGACATGTCTTACACTAG-CTCTTC-TCAA--T-GTCGATGCATGTCCCAGACATG
* *
81985315 TTTTACTCTAGC
60 TCTTACACTAGC
81985327 ACATATATCA
Statistics
Matches: 142, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
91 4 0.03
92 1 0.01
93 6 0.04
94 94 0.66
95 23 0.16
96 14 0.10
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (92 bp):
CATGTTCCAGACATGTCTTACACTAGCTCTTCTCAATGTCGATGCATGTCCCAGACATGTCTTAC
ACTAGCTTGTATCTCTCGAGGCCGATG
Found at i:81990100 original size:14 final size:16
Alignment explanation
Indices: 81990081--81990112 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81990071 AATTTTTTGT
81990081 TCCTTG-AC-ATTTTA
1 TCCTTGTACAATTTTA
81990095 TCCTTGTACAATTTTA
1 TCCTTGTACAATTTTA
81990111 TC
1 TC
81990113 TTCTCTTCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 2 0.12
16 8 0.50
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TCCTTGTACAATTTTA
Found at i:81990702 original size:28 final size:28
Alignment explanation
Indices: 81990665--81990723 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
81990655 TGGGAAAATG
*
81990665 AAAGATATGGCAGAGAAAACGAAAGAGA
1 AAAGAGATGGCAGAGAAAACGAAAGAGA
* *
81990693 AAAGAGATGGCAGAGAAGATGAAAGAGA
1 AAAGAGATGGCAGAGAAAACGAAAGAGA
81990721 AAA
1 AAA
81990724 TGTTGAAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.58, C:0.05, G:0.31, T:0.07
Consensus pattern (28 bp):
AAAGAGATGGCAGAGAAAACGAAAGAGA
Found at i:81996741 original size:17 final size:17
Alignment explanation
Indices: 81996710--81996766 Score: 53
Period size: 19 Copynumber: 3.1 Consensus size: 17
81996700 AATTAACTTA
81996710 AATTATATATTTTATCTTTT
1 AATTATATA--TTAT-TTTT
81996730 -ATTATATATTATTTTT
1 AATTATATATTATTTTT
*
81996746 AATTAAATATTTATATTTT
1 AATTATATA-TTAT-TTTT
81996765 AA
1 AA
81996767 ATTTATAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
16 4 0.12
17 11 0.33
18 4 0.12
19 14 0.42
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (17 bp):
AATTATATATTATTTTT
Found at i:82005213 original size:16 final size:17
Alignment explanation
Indices: 82005189--82005220 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
82005179 AAAAATAATA
82005189 AAATAAAAATATAATTC
1 AAATAAAAATATAATTC
82005206 AAAT-AAAATATAATT
1 AAATAAAAATATAATT
82005221 AATCCAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAAAAATATAATTC
Found at i:82007831 original size:2 final size:2
Alignment explanation
Indices: 82007790--82007822 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
82007780 TAAAGCAAGC
*
82007790 AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82007823 CACATATATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:82008478 original size:19 final size:19
Alignment explanation
Indices: 82008423--82008479 Score: 53
Period size: 22 Copynumber: 2.8 Consensus size: 19
82008413 CATCTCTAAA
*
82008423 AGTGTGAACCACCTTCTAC
1 AGTGTAAACCACCTTCTAC
*
82008442 AGTGGCTCATTA-CACCTTCTAC
1 AGT-G-T-A-AACCACCTTCTAC
82008464 AGTGTAAACCACCTTC
1 AGTGTAAACCACCTTC
82008480 ATCTTAGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
18 1 0.03
19 11 0.37
20 2 0.07
21 2 0.07
22 13 0.43
23 1 0.03
ACGTcount: A:0.26, C:0.32, G:0.14, T:0.28
Consensus pattern (19 bp):
AGTGTAAACCACCTTCTAC
Found at i:82008990 original size:30 final size:30
Alignment explanation
Indices: 82008954--82009015 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
82008944 CATTGAAAAC
*
82008954 TTAGTTTGTAAGACCAAGTGACTCACTTGT
1 TTAGTTTGTAAAACCAAGTGACTCACTTGT
82008984 TTAGTTTGTAAAACCAAGTGACTCACTTGT
1 TTAGTTTGTAAAACCAAGTGACTCACTTGT
82009014 TT
1 TT
82009016 TACTTACAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (30 bp):
TTAGTTTGTAAAACCAAGTGACTCACTTGT
Found at i:82009565 original size:11 final size:11
Alignment explanation
Indices: 82009551--82009606 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
82009541 AGATAAATAT
82009551 TATTTTATTAA
1 TATTTTATTAA
*
82009562 TATTTTAATAATA
1 TATTTT-ATTA-A
*
82009575 TATTTTATTAT
1 TATTTTATTAA
* *
82009586 TACTTTATTAT
1 TATTTTATTAA
82009597 TATTTTATTA
1 TATTTTATTA
82009607 GTATATAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
11 25 0.66
12 6 0.16
13 7 0.18
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:82011637 original size:58 final size:54
Alignment explanation
Indices: 82011566--82011699 Score: 155
Period size: 54 Copynumber: 2.4 Consensus size: 54
82011556 TAGGGTCTGA
* * * *
82011566 ATTTAGCCTGGACTGGTAATTCAGACCAA-GCTC-ATTAGAGTAATTGTCATTGCAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGA-CAATACTCTA-T-GAGT--TTAT-ATTACAGGGG
*
82011624 ATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTACAGGGG
1 ATTTAGCCTGGACTGGTAATCCAGACAATACTCTATGAGTTTATATTACAGGGG
82011678 ATTTAGCCTGGACTGGTAATCC
1 ATTTAGCCTGGACTGGTAATCC
82011700 CACTGTAAGG
Statistics
Matches: 69, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
54 31 0.45
55 3 0.04
57 7 0.10
58 27 0.39
59 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.31
Consensus pattern (54 bp):
ATTTAGCCTGGACTGGTAATCCAGACAATACTCTATGAGTTTATATTACAGGGG
Found at i:82011786 original size:46 final size:46
Alignment explanation
Indices: 82011734--82012053 Score: 453
Period size: 46 Copynumber: 7.0 Consensus size: 46
82011724 AGTGTACTCT
*
82011734 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
82011780 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
82011826 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
82011872 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGTCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
82011918 ATGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
82011964 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** * *
82012010 ATGACA-GAAAATGAGTAAGACCATAATTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
82012054 TCATGTCAAA
Statistics
Matches: 255, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 254 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:82014627 original size:23 final size:22
Alignment explanation
Indices: 82014592--82014636 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
82014582 TTTGAGTTAA
*
82014592 TCTGCTGTGCTAGCAAGTATTTG
1 TCTGCTATGCTAGCAAGT-TTTG
*
82014615 TCTGCTATTCTAGCAAGTTTTG
1 TCTGCTATGCTAGCAAGTTTTG
82014637 GTTTTTTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (22 bp):
TCTGCTATGCTAGCAAGTTTTG
Found at i:82017838 original size:24 final size:24
Alignment explanation
Indices: 82017806--82017851 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
82017796 TTTTTGGGAA
82017806 GCTTTAGAGAGGGGTATACATGAG
1 GCTTTAGAGAGGGGTATACATGAG
*
82017830 GCTTTAGAGAGGGGTGTACATG
1 GCTTTAGAGAGGGGTATACATG
82017852 TCTTTAAACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.39, T:0.26
Consensus pattern (24 bp):
GCTTTAGAGAGGGGTATACATGAG
Found at i:82019993 original size:18 final size:17
Alignment explanation
Indices: 82019952--82019995 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
82019942 CACATTTGTA
82019952 TTATTTTAAGAAATGCT
1 TTATTTTAAGAAATGCT
* **
82019969 TTTTTTTAATTAATGACT
1 TTATTTTAAGAAATG-CT
82019987 TTATTTTAA
1 TTATTTTAA
82019996 AATGTAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.57
Consensus pattern (17 bp):
TTATTTTAAGAAATGCT
Found at i:82022755 original size:30 final size:27
Alignment explanation
Indices: 82022711--82022794 Score: 75
Period size: 28 Copynumber: 3.1 Consensus size: 27
82022701 AATATATTAG
82022711 TTATATAAATTAAAAAATTATAAAAACA
1 TTATATAAATTAAAAAATTA-AAAAACA
*
82022739 TTATATGAAATATAAAAAGTT-AAAAAC-
1 TTATAT-AAAT-TAAAAAATTAAAAAACA
* ** *
82022766 -TATAAAAATTATCAAATTAAAAAAAA
1 TTATATAAATTAAAAAATTAAAAAACA
82022792 TTA
1 TTA
82022795 AAATTCTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
24 6 0.13
25 9 0.20
26 4 0.09
27 2 0.04
28 12 0.27
29 4 0.09
30 8 0.18
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (27 bp):
TTATATAAATTAAAAAATTAAAAAACA
Found at i:82022797 original size:8 final size:9
Alignment explanation
Indices: 82022658--82022789 Score: 55
Period size: 8 Copynumber: 14.6 Consensus size: 9
82022648 AATAAATCAA
82022658 AAAAATTAT
1 AAAAATTAT
82022667 AAAAATTAT
1 AAAAATTAT
*
82022676 -TAAATT-T
1 AAAAATTAT
*
82022683 -AAAATTTT
1 AAAAATTAT
*
82022691 CAAAAAATAT
1 -AAAAATTAT
82022701 AATATATTAGTTAT
1 AA-A-A--A-TTAT
*
82022715 ATAAATTA-
1 AAAAATTAT
82022723 AAAAATTAT
1 AAAAATTAT
82022732 AAAAACATTAT
1 -AAAA-ATTAT
*
82022743 ATGAAA-TAT
1 A-AAAATTAT
*
82022752 AAAAAGT-T
1 AAAAATTAT
*
82022760 AAAAACTAT
1 AAAAATTAT
82022769 AAAAATTAT
1 AAAAATTAT
*
82022778 -CAAATTA-
1 AAAAATTAT
82022785 AAAAA
1 AAAAA
82022790 AATTAAAATT
Statistics
Matches: 95, Mismatches: 13, Indels: 31
0.68 0.09 0.22
Matches are distributed among these distances:
7 6 0.06
8 32 0.34
9 28 0.29
10 14 0.15
11 8 0.08
12 1 0.01
13 2 0.02
14 4 0.04
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:82037169 original size:21 final size:21
Alignment explanation
Indices: 82037140--82037190 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
82037130 CTCCAAACAT
*
82037140 GGCTATGTGGCTATCC-CACAC
1 GGCTATGTGACTA-CCTCACAC
*
82037161 GGCTGTGTGACTACCTCACAC
1 GGCTATGTGACTACCTCACAC
*
82037182 GCCTATGTG
1 GGCTATGTG
82037191 CATGGGCTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.18, C:0.31, G:0.25, T:0.25
Consensus pattern (21 bp):
GGCTATGTGACTACCTCACAC
Found at i:82038408 original size:132 final size:132
Alignment explanation
Indices: 82038169--82038408 Score: 327
Period size: 132 Copynumber: 1.8 Consensus size: 132
82038159 TCTCGCTTTG
* * * * * * *
82038169 GAAAACGTGAATGAAATTCCAAAGGGATATTCGATTATTTTGCACAAACGAGAAATTGCAACCCA
1 GAAAACATGAACGAAATTCCAAAGAGACATCCAATTATTTTGCACAAACAAGAAATTGCAACCCA
* * *
82038234 GCACGATAGGGCACGATTCCCCGAATTGCCGAACGTCAAACATTTCCTTCGTTTTAAAAGGTTTT
66 ACACGATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCCTTCGTTTTAAAAGGTTTT
82038299 TA
131 TA
* **
82038301 GAAAACATGAACGAAATTCTAAAGAGACATCCAATTATTTTGGGCAAACAAGAAATTGCAACCCA
1 GAAAACATGAACGAAATTCCAAAGAGACATCCAATTATTTTGCACAAACAAGAAATTGCAACCCA
* * * *
82038366 ACACGATAGGGCACGATTTCCTGAATTGCTAAACATCGAACAT
66 ACACGATAGGGCACGATTCCCCGAATTGCCAAACATCAAACAT
82038409 CGTCTCCGTT
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
132 91 1.00
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (132 bp):
GAAAACATGAACGAAATTCCAAAGAGACATCCAATTATTTTGCACAAACAAGAAATTGCAACCCA
ACACGATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCCTTCGTTTTAAAAGGTTTT
TA
Found at i:82038724 original size:3 final size:3
Alignment explanation
Indices: 82038718--82038778 Score: 113
Period size: 3 Copynumber: 20.3 Consensus size: 3
82038708 ATGATAAAAA
*
82038718 AAT AAT AAT AAC AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
82038766 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
82038779 TAGAAATACA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:82038884 original size:22 final size:21
Alignment explanation
Indices: 82038796--82038893 Score: 62
Period size: 22 Copynumber: 4.7 Consensus size: 21
82038786 ACAAAAAGCA
*
82038796 AATATAATAAAAATATTAAATT
1 AATATAATAAAAATA-TACATT
* *
82038818 AA-AGTAATAAAAA-AAACAAT
1 AATA-TAATAAAAATATACATT
* * *
82038838 ACTAT-ATATAAATATATA-T
1 AATATAATAAAAATATACATT
82038857 ATATATACATAAAAATATACATT
1 A-ATATA-ATAAAAATATACATT
*
82038880 AATAT-ATAATAATA
1 AATATAATAAAAATA
82038894 ATAGTCATAG
Statistics
Matches: 58, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
19 8 0.14
20 19 0.33
21 3 0.05
22 26 0.45
23 2 0.03
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (21 bp):
AATATAATAAAAATATACATT
Found at i:82039118 original size:3 final size:3
Alignment explanation
Indices: 82039105--82039184 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
82039095 GAGGGCATAT
82039105 ATA AT- ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA ATA
1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA ATA
* *
82039149 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
82039185 AAAAATAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:82039127 original size:12 final size:12
Alignment explanation
Indices: 82039103--82039185 Score: 71
Period size: 12 Copynumber: 6.6 Consensus size: 12
82039093 GAGAGGGCAT
82039103 ATATAATATAATA
1 ATATAA-ATAATA
82039116 ATATAAATAATA
1 ATATAAATAATA
82039128 ATATATACATGAGA-A
1 ATATA-A-AT-A-ATA
82039143 ATA-ATAATAATA
1 ATATA-AATAATA
82039155 ATATAAATAATA
1 ATATAAATAATA
* *
82039167 GTAAAAATAATA
1 ATATAAATAATA
*
82039179 AAATAAA
1 ATATAAA
82039186 AAAATAAAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
11 1 0.02
12 37 0.63
13 10 0.17
14 5 0.08
15 5 0.08
16 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATATAAATAATA
Found at i:82039146 original size:21 final size:18
Alignment explanation
Indices: 82039105--82039166 Score: 72
Period size: 18 Copynumber: 3.3 Consensus size: 18
82039095 GAGGGCATAT
*
82039105 ATAAT-ATAATAATATAA
1 ATAATAATAATAATAGAA
82039122 ATAATAATATATACATGAGAA
1 ATAATAATA-ATA-AT-AGAA
*
82039143 ATAATAATAATAATATAA
1 ATAATAATAATAATAGAA
82039161 ATAATA
1 ATAATA
82039167 GTAAAAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
17 5 0.13
18 12 0.31
19 5 0.13
20 5 0.13
21 12 0.31
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (18 bp):
ATAATAATAATAATAGAA
Done.