Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 266 of 325
Found at i:82808663 original size:37 final size:38
Alignment explanation
Indices: 82808600--82808677 Score: 88
Period size: 37 Copynumber: 2.1 Consensus size: 38
82808590 TAATTTTTTA
* *
82808600 AAAATATATTAAAATAAATTAAAATTACTA-AAAATAT
1 AAAATATATTAAAATAAATAAAAATTACTATAAAAAAT
* * *
82808637 AAAATGTATTAAAA-ATATAAATAATTATTATAAAAAAT
1 AAAATATATTAAAATAAATAAA-AATTACTATAAAAAAT
82808675 AAA
1 AAA
82808678 TAAATATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 5 0.15
37 20 0.59
38 9 0.26
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.32
Consensus pattern (38 bp):
AAAATATATTAAAATAAATAAAAATTACTATAAAAAAT
Found at i:82808676 original size:20 final size:19
Alignment explanation
Indices: 82808606--82808685 Score: 67
Period size: 20 Copynumber: 4.2 Consensus size: 19
82808596 TTTAAAAATA
*
82808606 TATTAAAATAAATTAA-AAT
1 TATTAAAA-AAATAAATAAT
* *
82808625 TACTAAAAATAT-AA-AAT
1 TATTAAAAAAATAAATAAT
*
82808642 GTATTAAAAATATAAATAAT
1 -TATTAAAAAAATAAATAAT
*
82808662 TATTATAAAAAATAAATAAA
1 TATTA-AAAAAATAAATAAT
82808682 TATT
1 TATT
82808686 TTATATTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
17 5 0.10
18 14 0.27
19 14 0.27
20 19 0.37
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (19 bp):
TATTAAAAAAATAAATAAT
Found at i:82808680 original size:24 final size:25
Alignment explanation
Indices: 82808646--82808730 Score: 74
Period size: 24 Copynumber: 3.6 Consensus size: 25
82808636 TAAAATGTAT
82808646 TAAAAAT--ATAAATAATTATTATA
1 TAAAAATAAATAAATAATTATTATA
82808669 -AAAAATAAATAAAT-ATT-TTATA
1 TAAAAATAAATAAATAATTATTATA
* *
82808691 TTAATATTAAATAAA-AATTATTATA
1 -TAAAAATAAATAAATAATTATTATA
* *
82808716 TTAATATGAAATAAA
1 TAAAAAT-AAATAAA
82808731 ATAACTCTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
22 11 0.22
23 3 0.06
24 23 0.47
25 12 0.24
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (25 bp):
TAAAAATAAATAAATAATTATTATA
Found at i:82808719 original size:25 final size:25
Alignment explanation
Indices: 82808653--82808731 Score: 92
Period size: 25 Copynumber: 3.2 Consensus size: 25
82808643 TATTAAAAAT
* *
82808653 ATAAATAATTATTATA--AAAAATAA
1 ATAAA-AATTATTATATTAATATTAA
*
82808677 ATAAATATT-TTATATTAATATTAA
1 ATAAAAATTATTATATTAATATTAA
*
82808701 ATAAAAATTATTATATTAATATGAA
1 ATAAAAATTATTATATTAATATTAA
82808726 ATAAAA
1 ATAAAA
82808732 TAACTCTCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.11
23 3 0.06
24 19 0.40
25 20 0.43
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.39
Consensus pattern (25 bp):
ATAAAAATTATTATATTAATATTAA
Found at i:82810359 original size:20 final size:20
Alignment explanation
Indices: 82810334--82810371 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
82810324 AGAGAGTTTA
82810334 TTTTATTTTAATA-TAATAAG
1 TTTTA-TTTAATATTAATAAG
82810354 TTTTATTTAATATTAATA
1 TTTTATTTAATATTAATA
82810372 TAAAAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTTTATTTAATATTAATAAG
Found at i:82810361 original size:25 final size:25
Alignment explanation
Indices: 82810330--82810392 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
82810320 TGGGAGAGAG
* * *
82810330 TTTATTTTATTTTAATATAATAAGT
1 TTTATTTAATTTTAATATAAAAAAT
*
82810355 TTTATTTAATATTAATATAAAAAAT
1 TTTATTTAATTTTAATATAAAAAAT
82810380 TTTATTTAATTTT
1 TTTATTTAATTTT
82810393 TATAATTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
TTTATTTAATTTTAATATAAAAAAT
Found at i:82810400 original size:9 final size:10
Alignment explanation
Indices: 82810386--82810439 Score: 53
Period size: 9 Copynumber: 5.7 Consensus size: 10
82810376 AAATTTTATT
82810386 TAATTTTT-A
1 TAATTTTTAA
82810395 TAATTTTTAA
1 TAATTTTTAA
82810405 TAA-TTTTAA
1 TAATTTTTAA
* *
82810414 TTTACTTTTAA
1 -TAATTTTTAA
82810425 T-ATTTTTAA
1 TAATTTTTAA
82810434 -AATTTT
1 TAATTTT
82810440 AAAATATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 26 0.67
10 7 0.18
11 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (10 bp):
TAATTTTTAA
Found at i:82810409 original size:29 final size:27
Alignment explanation
Indices: 82810354--82810440 Score: 88
Period size: 25 Copynumber: 3.2 Consensus size: 27
82810344 ATATAATAAG
* **
82810354 TTTTATTTAATATTAATA--TAAAAAA
1 TTTTATTTAATTTTAATATTTTTAAAA
*
82810379 TTTTATTTAATTTTTATAATTTTTAATAA
1 TTTTATTTAATTTTAAT-ATTTTTAA-AA
*
82810408 TTTTAATTTACTTTTAATATTTTTAAAA
1 TTTT-ATTTAATTTTAATATTTTTAAAA
82810436 TTTTA
1 TTTTA
82810441 AAATATTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
25 15 0.29
26 1 0.02
27 1 0.02
28 9 0.18
29 14 0.27
30 11 0.22
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (27 bp):
TTTTATTTAATTTTAATATTTTTAAAA
Found at i:82811389 original size:34 final size:34
Alignment explanation
Indices: 82811342--82811407 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
82811332 GCGCCATATG
*
82811342 GGTGAAACGTGTAAGATGTTCAATGATCAAAATA
1 GGTGAAACATGTAAGATGTTCAATGATCAAAATA
*
82811376 GGTGAAACATGTAAGATGTTCAATGATTAAAA
1 GGTGAAACATGTAAGATGTTCAATGATCAAAA
82811408 CATGATGTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (34 bp):
GGTGAAACATGTAAGATGTTCAATGATCAAAATA
Found at i:82831714 original size:199 final size:197
Alignment explanation
Indices: 82831303--82831928 Score: 700
Period size: 199 Copynumber: 3.2 Consensus size: 197
82831293 AAGTTTTGGA
* * * * *
82831303 TTTAATTTTTGACATAATTTGGTACATTAACTTTTATAATGTCATTG-CTAGTCTAAATACTCCA
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTC-A-CCTAAATACTTCA
* * * ** * *
82831367 TTCTGATTAAAATGTGGACGTGCATGTACCCAAATATACAACTTTTA---CTTC--TTTGAGATT
64 TTCTGATTAAAATGTTGACGTACACGTGTCCAAATACACGACTTTTACTTCTTCTTTTTGAGATT
* * * * *
82831427 ATATAATAATGGTCAAATTTT-AATTTTGGT-TCATAT-ATTATGCTCAAATATGGAATTTAATC
129 ACATAACAATGGTC-AATTTTCAATTTTGGTCTC-TATGA-TATGCTCAATTTTGAAATTTAATC
82831489 TCTATAC
191 TCTATAC
** * *
82831496 TTTACGTTTTGATATAATTTGGTACCTCAACTTTTATTATGTCATAGTCACACTAAATACTTCAT
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCAC-CTAAATACTTCAT
* * *
82831561 TCTGATTAAAATGTTGACATACACGTGTCCAAATACATGACATTTTACTTCTTCTTTTTTAGATT
65 TCTGATTAAAATGTTGACGTACACGTGTCCAAATACACGAC-TTTTACTTCTTCTTTTTGAGATT
82831626 ACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCTCT
129 ACATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCTCT
*
82831691 ATAT
194 ATAC
* **
82831695 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGCCATAGTCATCCTAAATGA-TTTG
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCA-CCTAAAT-ACTTCA
* * * **
82831759 TTCTAATTAAAATGTTGATGTACACGAGTCCAAATACACGACCTTTTACTTC-T-TTTTTGAGCC
64 TTCTGATTAAAATGTTGACGTACACGTGTCCAAATACACGA-CTTTTACTTCTTCTTTTTGAGAT
* * * * *
82831822 TACATATAACAATGGTCAAATTTCAAATTTGGTCCCCATGATAAGCTCAATTTTGAAATTTAATC
128 TAC--ATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATC
*
82831887 TTTATAC
191 TCTATAC
*
82831894 TTTAATTTTTGACATAATTTGGTACCTTAACTTTT
1 TTTAATTTTTGACATAATTTGGTACCTCAACTTTT
82831929 TTCTTGTCAT
Statistics
Matches: 369, Mismatches: 48, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
193 85 0.23
194 6 0.02
197 14 0.04
198 7 0.02
199 251 0.68
200 6 0.02
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (197 bp):
TTTAATTTTTGACATAATTTGGTACCTCAACTTTTATAATGTCATAGTCACCTAAATACTTCATT
CTGATTAAAATGTTGACGTACACGTGTCCAAATACACGACTTTTACTTCTTCTTTTTGAGATTAC
ATAACAATGGTCAATTTTCAATTTTGGTCTCTATGATATGCTCAATTTTGAAATTTAATCTCTAT
AC
Found at i:82842747 original size:23 final size:23
Alignment explanation
Indices: 82842721--82842775 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 23
82842711 CACAAGCCTA
82842721 ACACAGCCTA-GTCCATGTGGCCC
1 ACACAGCC-ACGTCCATGTGGCCC
82842744 ACACAGCCACGTCCATGTGGCCC
1 ACACAGCCACGTCCATGTGGCCC
82842767 ACAC-GCCAC
1 ACACAGCCAC
82842776 ACTCATGCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 6 0.19
23 25 0.81
ACGTcount: A:0.24, C:0.44, G:0.20, T:0.13
Consensus pattern (23 bp):
ACACAGCCACGTCCATGTGGCCC
Found at i:82843803 original size:8 final size:8
Alignment explanation
Indices: 82843790--82843815 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
82843780 GAGATTTGAT
82843790 TTCAAGAA
1 TTCAAGAA
82843798 TTCAAGAA
1 TTCAAGAA
82843806 TTCAAGAA
1 TTCAAGAA
82843814 TT
1 TT
82843816 ATCCAAGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.31
Consensus pattern (8 bp):
TTCAAGAA
Found at i:82845126 original size:18 final size:18
Alignment explanation
Indices: 82845103--82845137 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82845093 ATATTTGAAA
82845103 TAATTTAATATAATATAT
1 TAATTTAATATAATATAT
*
82845121 TAATTTAATTTAATATA
1 TAATTTAATATAATATA
82845138 AACATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAATTTAATATAATATAT
Found at i:82845144 original size:18 final size:18
Alignment explanation
Indices: 82845104--82845164 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
82845094 TATTTGAAAT
* *
82845104 AATTTAATATAATATATT
1 AATTTAATTTAATATATA
82845122 AATTTAATTTAATATA-A
1 AATTTAATTTAATATATA
* *
82845139 ACATTTTATTTCAAAATAT-
1 A-ATTTAATTT-AATATATA
82845158 AATTTAA
1 AATTTAA
82845165 AATAAAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 1 0.03
18 28 0.80
19 6 0.17
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (18 bp):
AATTTAATTTAATATATA
Found at i:82845184 original size:28 final size:31
Alignment explanation
Indices: 82845126--82845192 Score: 86
Period size: 28 Copynumber: 2.3 Consensus size: 31
82845116 TATATTAATT
* *
82845126 TAATTTAATATAAACATTTTATTTCAAAATA
1 TAATTTAAAATAAACATTATATTTCAAAATA
82845157 TAATTTAAAATAAA-ATTATA-TT-AAAATA
1 TAATTTAAAATAAACATTATATTTCAAAATA
*
82845185 TATTTTAA
1 TAATTTAA
82845193 GAATGTTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 13 0.39
29 2 0.06
30 5 0.15
31 13 0.39
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (31 bp):
TAATTTAAAATAAACATTATATTTCAAAATA
Found at i:82845252 original size:26 final size:24
Alignment explanation
Indices: 82845198--82845321 Score: 110
Period size: 26 Copynumber: 4.9 Consensus size: 24
82845188 TTTAAGAATG
*
82845198 TTATTAAATTATA-TAATATTACTT
1 TTATTAAATTATATTAATAATA-TT
82845222 TTATTAAATTATATTTAATAATATT
1 TTATTAAATTATA-TTAATAATATT
* *
82845247 TATATTAAAATATGATTAA-ATTATTT
1 T-TATTAAATTAT-ATTAATAATA-TT
82845273 ATTATTAAATTATATTTAATAATAATT
1 -TTATTAAATTATA-TTAATAAT-ATT
*
82845300 TTATTGAAATT-TAATAATAATA
1 TTATT-AAATTATATTAATAATA
82845322 ACAATAATCA
Statistics
Matches: 84, Mismatches: 6, Indels: 20
0.76 0.05 0.18
Matches are distributed among these distances:
24 14 0.17
25 14 0.17
26 44 0.52
27 11 0.13
28 1 0.01
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.52
Consensus pattern (24 bp):
TTATTAAATTATATTAATAATATT
Found at i:82845927 original size:15 final size:17
Alignment explanation
Indices: 82845909--82845941 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
82845899 ATTTTTTCTC
82845909 AATTTA-TT-ATATTTT
1 AATTTATTTCATATTTT
82845924 AATTTATTTCATATTTT
1 AATTTATTTCATATTTT
82845941 A
1 A
82845942 TAAAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 2 0.12
17 8 0.50
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (17 bp):
AATTTATTTCATATTTT
Found at i:82851668 original size:25 final size:23
Alignment explanation
Indices: 82851616--82851670 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
82851606 TATAAATAGT
82851616 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
82851639 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
82851664 AATAGTG
1 AATAGTG
82851671 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:82851790 original size:22 final size:24
Alignment explanation
Indices: 82851732--82851799 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
82851722 ATAGATATAA
* *
82851732 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
82851756 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
82851780 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
82851800 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:82851855 original size:25 final size:24
Alignment explanation
Indices: 82851819--82851946 Score: 99
Period size: 23 Copynumber: 5.6 Consensus size: 24
82851809 AAAAAAATAT
*
82851819 ATATATATATAATATAGTATTAAAG
1 ATATATACATAATATAGTATT-AAG
* *
82851844 ATATATACATAAAATAGTA-TAAT
1 ATATATACATAATATAGTATTAAG
* * *
82851867 ATATATACGTAATATAGAATTTAG
1 ATATATACATAATATAGTATTAAG
* * *
82851891 A-ATATACCTAATATATTA-AAAG
1 ATATATACATAATATAGTATTAAG
*
82851913 A-ATAT--ATAATATAATATTAAG
1 ATATATACATAATATAGTATTAAG
*
82851934 AAATATA-ATAATA
1 ATATATACATAATA
82851947 ACAAAAAAAA
Statistics
Matches: 83, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
20 9 0.11
21 4 0.05
22 11 0.13
23 38 0.46
24 4 0.05
25 17 0.20
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (24 bp):
ATATATACATAATATAGTATTAAG
Found at i:82851924 original size:20 final size:21
Alignment explanation
Indices: 82851823--82851943 Score: 61
Period size: 20 Copynumber: 5.5 Consensus size: 21
82851813 AAATATATAT
*
82851823 ATATATAATATAGTATTAAAG-
1 ATATATAATATAATA-TAAAGA
* *
82851844 ATATATACATAAAATAGTATAATA
1 ATATATA-ATATAATA-TA-AAGA
**
82851868 TATATACGTAATATAGA-ATTTAGA
1 -ATATA--TAATATA-ATATAAAGA
*
82851892 ATATACCTAATATATTA-AAAGA
1 ATATA--TAATATAATATAAAGA
*
82851914 ATATATAATATAATATTAAGA
1 ATATATAATATAATATAAAGA
82851935 A-ATATAATA
1 ATATATAATA
82851944 ATAACAAAAA
Statistics
Matches: 77, Mismatches: 14, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
20 17 0.22
21 12 0.16
22 16 0.21
23 16 0.21
24 2 0.03
25 6 0.08
26 5 0.06
27 3 0.04
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.36
Consensus pattern (21 bp):
ATATATAATATAATATAAAGA
Found at i:82853257 original size:87 final size:87
Alignment explanation
Indices: 82853106--82853312 Score: 240
Period size: 87 Copynumber: 2.4 Consensus size: 87
82853096 TCCTGAGCTT
* * *
82853106 AACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
1 AACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATA
*
82853171 GCTCAGCACGTGA-GCGAAGGCTC
65 CCTCAGCACGTGACGCG-AGGCTC
* **
82853194 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAAC-AAA-ATTTGTAAAACAGATTTTGAAAAT
1 AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACA-TT-AAAAACAGAAATTGAAAAT
* * * *
82853257 ACCTCGGTATGTGACTCGAGGCTC
64 ACCTCAGCACGTGACGCGAGGCTC
* *
82853281 AACTCACCTCTCGTAATATGAGTTGATTTTTA
1 AACTCACTTCTCGCAATATGAGTTGATTTTTA
82853313 CAAAGCATAA
Statistics
Matches: 103, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
85 1 0.01
86 5 0.05
87 71 0.69
88 26 0.25
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.30
Consensus pattern (87 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACATTAAAAACAGAAATTGAAAATAC
CTCAGCACGTGACGCGAGGCTC
Found at i:82853436 original size:103 final size:102
Alignment explanation
Indices: 82853249--82853439 Score: 287
Period size: 103 Copynumber: 1.8 Consensus size: 102
82853239 AAAACAGATT
* * *
82853249 TTGAAAATACCTCGGTATGTGACTCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTAC
1 TTGAAAATACCTCGGCATGTGACTCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTAC
82853314 AAAGCATAAATTGAAAAAAAAATAAAAATAAAAATCAA
66 AAAGCATAAATTG-AAAAAAAATAAAAATAAAAATCAA
*
82853352 TTGAAAATACCTCGGCGTGTGA-TCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTT
1 TTGAAAATACCTCGGCATGTGACTC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGA--TTTT
82853416 TGACAAA-CATAAATTGAAAAAAAA
63 T-ACAAAGCATAAATTGAAAAAAAA
82853440 GAAATTGAAA
Statistics
Matches: 80, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
102 2 0.03
103 51 0.64
104 8 0.10
105 14 0.17
106 5 0.06
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (102 bp):
TTGAAAATACCTCGGCATGTGACTCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTAC
AAAGCATAAATTGAAAAAAAATAAAAATAAAAATCAA
Found at i:82853570 original size:181 final size:179
Alignment explanation
Indices: 82853350--82853688 Score: 468
Period size: 181 Copynumber: 1.9 Consensus size: 179
82853340 AATAAAAATC
* * * *
82853350 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATAAGCTGATTTTT
* * * * *
82853415 TTGACAA-ACATAAATTGAAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTC
66 TTGA-AACACAGAAATTG-AAAAAAAGAAATGGAAAACACCTCAGC--GTCCTGAGGCTCAACTC
*
82853479 ACCTCTCGCAATATCAGTTGA-TTTTTTGAAAAAACAAAATTTGAAAAACAGT
127 ACCTCTCGCAATATCAGCTGATTTTTTTGAAAAAACAAAATTTGAAAAACAGT
*
82853531 AATTGAAAATACCTCAGCGTGTGAGTC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTT
1 AATTGAAAATACCTCAGCGTGTGA-TCTAAGGCTCAACTCACCACTCGCAATATAAGCTGATTTT
* * * *
82853595 TTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACC
65 TTTGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACC
*
82853660 TCTCGCAATATGAGCTGATTTTTTTGAAA
130 TCTCGCAATATCAGCTGATTTTTTTGAAA
82853689 GACAGAAATT
Statistics
Matches: 139, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
178 33 0.24
179 10 0.07
180 24 0.17
181 70 0.50
182 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (179 bp):
AATTGAAAATACCTCAGCGTGTGATCTAAGGCTCAACTCACCACTCGCAATATAAGCTGATTTTT
TTGAAACACAGAAATTGAAAAAAAGAAATGGAAAACACCTCAGCGTCCTGAGGCTCAACTCACCT
CTCGCAATATCAGCTGATTTTTTTGAAAAAACAAAATTTGAAAAACAGT
Found at i:82853593 original size:91 final size:88
Alignment explanation
Indices: 82853350--82853699 Score: 400
Period size: 91 Copynumber: 3.9 Consensus size: 88
82853340 AATAAAAATC
* * *
82853350 AATTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGT-A--TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
* * *
82853415 TTGACAAACATAAATTGAAAAAAAAGA
63 TTGAAAAACAGAAATTG-AAAAACAGA
* * * * *
82853442 AATTGAAAATATCTCAGCGTGTCCTGAGGCTGAACTCACCTCTCGCAATATCAGTTGA-TTTTTT
1 AATTGAAAATACCTCAGCGTGT-ATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
*
82853506 GAAAAAACA-AAATTTGAAAAACAGT
65 G-AAAAACAGAAA-TTGAAAAACAGA
* *
82853531 AATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGT-A-T-GAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTT
* *
82853596 TTGAAACACAGAAATTGAAGAACAGA
63 TTGAAAAACAGAAATTGAAAAACAGA
* * * *
82853622 AATGGAAAACACCTCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG
1 AATTGAAAATACCTCAGCGTGTATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG
*
82853686 AAAGACAGAAATTG
66 AAAAACAGAAATTG
82853700 GAAATACCTC
Statistics
Matches: 225, Mismatches: 27, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
87 51 0.23
88 1 0.00
89 38 0.17
90 42 0.19
91 63 0.28
92 30 0.13
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (88 bp):
AATTGAAAATACCTCAGCGTGTATGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG
AAAAACAGAAATTGAAAAACAGA
Found at i:82853734 original size:75 final size:74
Alignment explanation
Indices: 82853610--82854752 Score: 1307
Period size: 75 Copynumber: 15.3 Consensus size: 74
82853600 AACACAGAAA
* * * *
82853610 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
82853673 GCTGATTTTT
65 GTTGATTTTT
*
82853683 TTGAAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82853748 GTTGA--TTT
65 GTTGATTTTT
* * * * * *
82853756 TTGACAAACAAAAATTGAAATTACCT-TA-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82853819 GTTGATTTTT
65 GTTGATTTTT
* * *
82853829 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTTGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
82853894 GCTGATTTTT
65 GTTGATTTTT
* *
82853904 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC-CACCTCTTGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82853968 GTTGA--TTT
65 GTTGATTTTT
* * * *
82853976 TTGACAAA-AAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82854040 GTTGATTTTT
65 GTTGATTTTT
* * ** *
82854050 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATAT
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATAT
*
82854115 GAGCTGATTTTT
63 GAGTTGATTTTT
* * ** * *
82854127 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCT
1 TTGAAA-ACAGAAATT---G---A-AAAT----ACCTCAAC-GTGTCTTGAGGCTCAACTCACCT
*
82854192 CTCGCAATATGAGCTGATTTTTTT
53 CTCGCAATATGAGTTGA--TTTTT
82854216 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82854281 GTTGA--TTT
65 GTTGATTTTT
* * * * * *
82854289 TTGACAAACAAAAATTGAAATTACCTCAAC--GTCTTGAGGTTCAACTCACCTATCGTAATATAA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82854352 GTTGATTTTT
65 GTTGATTTTT
* *
82854362 TTGAAAAACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
82854427 GCTGATTTTT
65 GTTGATTTTT
*
82854437 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82854502 GTTGA--TTT
65 GTTGATTTTT
* * * * * *
82854510 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82854575 GTTGATTTTT
65 GTTGATTTTT
* *
82854585 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGGAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
82854650 GTTGA--GTT
65 GTTGATTTTT
* * * * * *
82854658 TTGACAAACAAAAATTGAAATTACCTCAGCGTATCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
82854723 GTTGATTTTT
65 GTTGATTTTT
* *
82854733 TT-AGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
82854753 AACGAAAATT
Statistics
Matches: 922, Mismatches: 101, Indels: 93
0.83 0.09 0.08
Matches are distributed among these distances:
71 106 0.11
72 30 0.03
73 254 0.28
74 60 0.07
75 310 0.34
76 4 0.00
77 84 0.09
78 4 0.00
80 1 0.00
82 4 0.00
83 2 0.00
84 4 0.00
86 1 0.00
87 31 0.03
88 4 0.00
89 23 0.02
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:82854023 original size:221 final size:223
Alignment explanation
Indices: 82853610--82854752 Score: 1422
Period size: 221 Copynumber: 5.1 Consensus size: 223
82853600 AACACAGAAA
* * * * *
82853610 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
82853673 GCTGATTTTTTTGAAAGACAGAAATTGGAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* *
82853738 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTTAGC--GTCTTGAGGTTCAAC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
*
82853801 TCACCTATCGCAATATGAGTTGATTTTT
196 TCACCTCTCGCAATATGAGTTGATTTTT
*
82853829 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
82853894 GCTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC-CACCTCT
66 GCTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
82853958 TGCAATATGAGTTGATTTTTGACAAA-AAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
131 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
*
82854022 TCACCTATCGCAATATGAGTTGATTTTT
196 TCACCTCTCGCAATATGAGTTGATTTTT
* * * ** * *
82854050 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATAT
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGT--CTTGAGGTTCAACTCACCTCTCGCAATAT
* *
82854115 GAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGA
64 GAGCTGATTTTTTTGAAAAACAGAAATT---G---A-AAAT-------ACCTCAACGTGTCTTGA
* * * *
82854178 GGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTGA-AAGACAGAAATTGAAAATACCT
115 GGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTTGACAA-ACAAAAATTGAAATTACCT
*
82854242 CAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
175 CAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * * *
82854289 TTGACAAACAAAAATTGAAATTACCTCAAC--GTCTTGAGGTTCAACTCACCTATCGTAATATAA
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * *
82854352 GTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCT
66 GCTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* * * * *
82854417 CGCAATATGAGCTGATTTTTTTTA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTC
131 CGCAATATGAGTTGA--TTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTC
82854481 AACTCACCTCTCGCAATATGAGTTGA--TTT
193 AACTCACCTCTCGCAATATGAGTTGATTTTT
* * * * *
82854510 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTT-AACTCACCTATCGCAATATG
1 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGG-TTCAACTCACCTCTCGCAATATG
*
82854574 AGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
65 AGCTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* * * * *
82854639 TTGGAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTATCCTGAGGCTCAA
130 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAA
*
82854704 CTCACTTCTCGCAATATGAGTTGATTTTT
195 CTCACCTCTCGCAATATGAGTTGATTTTT
* * *
82854733 TT-AGAAACATAAATTAAAAA
1 TTGAAAAACAAAAATTGAAAA
82854753 AACGAAAATT
Statistics
Matches: 823, Mismatches: 66, Indels: 67
0.86 0.07 0.07
Matches are distributed among these distances:
219 43 0.05
220 33 0.04
221 335 0.41
222 17 0.02
223 195 0.24
224 2 0.00
226 1 0.00
228 4 0.00
229 2 0.00
230 4 0.00
232 1 0.00
235 62 0.08
236 21 0.03
237 7 0.01
239 31 0.04
240 8 0.01
241 57 0.07
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (223 bp):
TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTT
Found at i:82854438 original size:148 final size:146
Alignment explanation
Indices: 82854141--82854752 Score: 757
Period size: 148 Copynumber: 4.1 Consensus size: 146
82854131 AACACAGAAA
* * * *
82854141 TTGAAGAACAGAAATGGAAAACACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAG
1 TTGAA-AACAGAAATTGAAAATACCTCAACGGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
82854205 CTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
65 TTGA----TTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTC
82854270 TCGCAATATGAGTTGA--TTT
126 TCGCAATATGAGTTGATTTTT
* * * * * *
82854289 TTGACAAACAAAAATTGAAATTACCTCAAC-GTCTTGAGGTTCAACTCACCTATCGTAATATAAG
1 TTGA-AAACAGAAATTGAAAATACCTCAACGGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
82854353 TTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTC
65 TTGA--TTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTC
*
82854418 GCAATATGAGCTGATTTTT
128 GCAATATGAGTTGATTTTT
*
82854437 TTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACG-GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
82854502 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTATCG
64 GTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
82854567 CAATATGAGTTGATTTTT
129 CAATATGAGTTGATTTTT
* *
82854585 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGGAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAACG-GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
82854650 GTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTATCCTGAGGCTCAACTCACTTCTCG
64 GTTGATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCG
82854715 CAATATGAGTTGATTTTT
129 CAATATGAGTTGATTTTT
* *
82854733 TT-AGAAACATAAATTAAAAA
1 TTGA-AAACAGAAATTGAAAA
82854753 AACGAAAATT
Statistics
Matches: 416, Mismatches: 40, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
146 72 0.17
147 16 0.04
148 290 0.70
149 4 0.01
150 34 0.08
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (146 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTT
Found at i:82854459 original size:533 final size:533
Alignment explanation
Indices: 82853518--82854618 Score: 2053
Period size: 533 Copynumber: 2.1 Consensus size: 533
82853508 AAAAACAAAA
*
82853518 TTTGAAAAACAGTAATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATA
82853583 TGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAG
66 TGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAG
*
82853648 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGGAAATACCTCAAC
131 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAAC
82853713 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
196 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
* * *
82853778 ACCTTAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAAAAA
261 ACCTCAACGTCTTGAGGTTCAACTCACCTATCGCAATATAAGTTGATTTTTTTGAAAAACAAAAA
* *
82853843 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTTGCAATATGAGCTGATTTTTTTTA
326 TTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTA
*
82853908 AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC-CACCTCTTGCAATATGAGTTG
391 AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
82853972 ATTTTTGACAAA-AAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAAT
456 ATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAAT
82854036 ATGAGTTGATTTT
521 ATGAGTTGATTTT
82854049 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATA
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATA
82854114 TGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAG
66 TGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAG
82854179 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA
131 GTTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTTTGAAAGACAGAAATTGAAAATACCTCA
82854244 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
194 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAA
* *
82854309 TTACCTCAACGTCTTGAGGTTCAACTCACCTATCGTAATATAAGTTGATTTTTTTGAAAAACAGA
259 TTACCTCAACGTCTTGAGGTTCAACTCACCTATCGCAATATAAGTTGATTTTTTTGAAAAACAAA
82854374 AATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
324 AATTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
82854439 TAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
389 TAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
82854504 TGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTATCGCA
454 TGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCA
82854569 ATATGAGTTGATTTT
519 ATATGAGTTGATTTT
*
82854584 TTTGAAAAACAGAAATTGAAAATACCTCAACGTGT
1 TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGT
82854619 CTTGAGGCTC
Statistics
Matches: 553, Mismatches: 13, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
531 159 0.29
533 265 0.48
534 32 0.06
535 97 0.18
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (533 bp):
TTTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATA
TGAGCTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAG
GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAAC
GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
ACCTCAACGTCTTGAGGTTCAACTCACCTATCGCAATATAAGTTGATTTTTTTGAAAAACAAAAA
TTGAAAATACCTCAAAGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTA
AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAAT
ATGAGTTGATTTT
Found at i:82854957 original size:14 final size:13
Alignment explanation
Indices: 82854922--82854966 Score: 72
Period size: 13 Copynumber: 3.4 Consensus size: 13
82854912 TTGATTTTTG
82854922 AAAAACAGAAATT
1 AAAAACAGAAATT
*
82854935 AAAAGCAGAAATT
1 AAAAACAGAAATT
82854948 GAAAAACAGAAATT
1 -AAAAACAGAAATT
82854962 AAAAA
1 AAAAA
82854967 TACCTTGGCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.69, C:0.07, G:0.11, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:82854978 original size:100 final size:100
Alignment explanation
Indices: 82854750--82855111 Score: 405
Period size: 100 Copynumber: 3.7 Consensus size: 100
82854740 CATAAATTAA
*
82854750 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
82854814 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
64 TGATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* *
82854849 AAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAAGCTCAACTCACCCCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCC-TGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
82854914 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
65 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* ** * *
82854949 AAAAACAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
82855014 GATTTTTGAAAAGCATAAATT-----G----AA---
65 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* *
82855038 AAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC--GTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAG
82855103 TTGATTTTT
63 TTGATTTTT
82855112 TTGAAAGATA
Statistics
Matches: 231, Mismatches: 25, Indels: 22
0.83 0.09 0.08
Matches are distributed among these distances:
89 23 0.10
91 41 0.18
92 2 0.01
96 1 0.00
98 2 0.01
99 59 0.26
100 86 0.37
101 17 0.07
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.25
Consensus pattern (100 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
Found at i:82855103 original size:91 final size:87
Alignment explanation
Indices: 82854935--82855111 Score: 237
Period size: 91 Copynumber: 2.0 Consensus size: 87
82854925 AACAGAAATT
* * * *
82854935 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTAGGCGTGACCCGAGGCCCAACTCACCTC
82855000 TCGCAATATGAGTTGATTTTTG
66 TCGCAATATGAGTTGATTTTTG
* * * * *
82855022 AAAAGCATAAATTGAAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCA
1 AAAAGCAGAAATTG--AAAAACAGAAATTAAAAATACCT-AG-GCGTGACCCGAGGCCCAACTCA
82855087 CCTCTCGCAATATGAGTTGATTTTT
62 CCTCTCGCAATATGAGTTGATTTTT
82855112 TTGAAAGATA
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
87 13 0.17
89 21 0.27
90 1 0.01
91 42 0.55
ACGTcount: A:0.37, C:0.20, G:0.19, T:0.24
Consensus pattern (87 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTAGGCGTGACCCGAGGCCCAACTCACCTC
TCGCAATATGAGTTGATTTTTG
Found at i:82869788 original size:101 final size:101
Alignment explanation
Indices: 82869621--82869815 Score: 266
Period size: 101 Copynumber: 1.9 Consensus size: 101
82869611 TGGATGTCAC
* * *
82869621 GACACCAATGCCTTTGCCATCAACCGAGGAGTTGGACTTCACCAAATTGCATATTTGAGTAGACT
1 GACACCAATGCCTTTGCCATCAACCAAGGAGTTGGACTTCACCAAATTGCATATCTAAGTAGACT
* *
82869686 ATCTCTGAAGTTGCCACACCAAGGTGTTGATGTCGT
66 ATATCTGAAGTCGCCACACCAAGGTGTTGATGTCGT
* * * * *
82869722 GACACCCATGCCTTTTCCATCAATCAAGGAGTTGGACTTTACCAAATTGGATATCTAAGT-GAAC
1 GACACCAATGCCTTTGCCATCAACCAAGGAGTTGGACTTCACCAAATTGCATATCTAAGTAG-AC
* *
82869786 TATATTTGAAGTCGCCACACTAAGGTGTTG
65 TATATCTGAAGTCGCCACACCAAGGTGTTG
82869816 GTGCCGCGAC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
100 1 0.01
101 80 0.99
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (101 bp):
GACACCAATGCCTTTGCCATCAACCAAGGAGTTGGACTTCACCAAATTGCATATCTAAGTAGACT
ATATCTGAAGTCGCCACACCAAGGTGTTGATGTCGT
Found at i:82871369 original size:19 final size:18
Alignment explanation
Indices: 82871347--82871393 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
82871337 GTTAAATGTA
*
82871347 AAAAATGTGATTTTTTAAT
1 AAAAATGTGA-TTTTAAAT
*
82871366 AAAAA-GTTATTTTAAAT
1 AAAAATGTGATTTTAAAT
82871383 ATAAAATGTGA
1 A-AAAATGTGA
82871394 AATTGATACC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 8 0.35
18 7 0.30
19 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (18 bp):
AAAAATGTGATTTTAAAT
Found at i:82874358 original size:15 final size:15
Alignment explanation
Indices: 82874340--82874375 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
82874330 TTGATTTCTT
*
82874340 TTAATTGTTATTTAA
1 TTAATTGTAATTTAA
82874355 TTAATTGTAATTTAA
1 TTAATTGTAATTTAA
82874370 -TAATTG
1 TTAATTG
82874376 AAGTTTGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (15 bp):
TTAATTGTAATTTAA
Found at i:82874525 original size:13 final size:13
Alignment explanation
Indices: 82874507--82874538 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
82874497 ATAAATTTAT
82874507 TTAAATTAATTAA
1 TTAAATTAATTAA
*
82874520 TTAAATTAATTGA
1 TTAAATTAATTAA
82874533 TTAAAT
1 TTAAAT
82874539 AAATAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (13 bp):
TTAAATTAATTAA
Found at i:82874587 original size:17 final size:18
Alignment explanation
Indices: 82874565--82874601 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
82874555 AATTGAAAAT
*
82874565 AATTATTAG-GTTGGATA
1 AATTATAAGTGTTGGATA
82874582 AATTATAAGTGTTGGATA
1 AATTATAAGTGTTGGATA
82874600 AA
1 AA
82874602 AGTCCAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (18 bp):
AATTATAAGTGTTGGATA
Found at i:82876430 original size:14 final size:15
Alignment explanation
Indices: 82876413--82876449 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
82876403 TATTTTGATA
82876413 GTTTTAGAAAGAT-T
1 GTTTTAGAAAGATGT
82876427 GTTTTA-AAAGATGT
1 GTTTTAGAAAGATGT
*
82876441 TTTTTAGAA
1 GTTTTAGAA
82876450 CTTAATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 6 0.30
14 12 0.60
15 2 0.10
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (15 bp):
GTTTTAGAAAGATGT
Found at i:82882201 original size:21 final size:21
Alignment explanation
Indices: 82882175--82882216 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
82882165 CCTATGAGAG
82882175 TAACACACTTATGTCAAGGTC
1 TAACACACTTATGTCAAGGTC
82882196 TAACACACTTATGTCAAGGTC
1 TAACACACTTATGTCAAGGTC
82882217 ATTAGATGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (21 bp):
TAACACACTTATGTCAAGGTC
Found at i:82889201 original size:17 final size:17
Alignment explanation
Indices: 82889168--82889201 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
82889158 TTTAAAAGAA
**
82889168 AAAATTAAAAATGAAGT
1 AAAATTAAAAAAAAAGT
82889185 AAAATTAAAAAAAAAGT
1 AAAATTAAAAAAAAAGT
82889202 GAAAGATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (17 bp):
AAAATTAAAAAAAAAGT
Found at i:82891448 original size:14 final size:15
Alignment explanation
Indices: 82891429--82891458 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
82891419 TTTTTTTATC
82891429 AAAATAA-TACAAAA
1 AAAATAATTACAAAA
82891443 AAAATAATTACAAAA
1 AAAATAATTACAAAA
82891458 A
1 A
82891459 TGAGATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.77, C:0.07, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAATAATTACAAAA
Found at i:82892068 original size:15 final size:15
Alignment explanation
Indices: 82892025--82892075 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
82892015 GAATTTTAAG
82892025 ATATATATATATTTGT
1 ATAT-TATATATTTGT
*
82892041 A-ATAATA-ATTTGT
1 ATATTATATATTTGT
82892054 ATATTATATATTTGT
1 ATATTATATATTTGT
*
82892069 ATTTTAT
1 ATATTAT
82892076 TTTTAATATT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 7 0.23
14 8 0.27
15 14 0.47
16 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (15 bp):
ATATTATATATTTGT
Found at i:82892128 original size:24 final size:24
Alignment explanation
Indices: 82892101--82892151 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
82892091 AGATTTAATG
82892101 TTTAAGATTATAT-TATTATATATA
1 TTTAAGATTATATGT-TTATATATA
***
82892125 TTTATTTTTATATGTTTATATATA
1 TTTAAGATTATATGTTTATATATA
82892149 TTT
1 TTT
82892152 TTAATAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 22 0.96
25 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (24 bp):
TTTAAGATTATATGTTTATATATA
Found at i:82893627 original size:2 final size:2
Alignment explanation
Indices: 82893620--82893664 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
82893610 GATGGATGTT
82893620 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
82893662 TA T
1 TA T
82893665 CCACTTGGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:82904153 original size:17 final size:16
Alignment explanation
Indices: 82904131--82904162 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
82904121 TAGCCCTTCC
82904131 TTATTAATATTATTATG
1 TTATTAAT-TTATTATG
82904148 TTATTAATTTATTAT
1 TTATTAATTTATTAT
82904163 TTAGCATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTATTAATTTATTATG
Found at i:82904352 original size:3 final size:3
Alignment explanation
Indices: 82904346--82904377 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
82904336 ATTATTATTA
*
82904346 TTG TTG TTG TTG TTA TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
82904378 TATTGATGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.03, C:0.00, G:0.28, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:82904363 original size:15 final size:15
Alignment explanation
Indices: 82904343--82904374 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
82904333 ATTATTATTA
82904343 TTATTGTTGTTGTTG
1 TTATTGTTGTTGTTG
82904358 TTATTGTTGTTGTTG
1 TTATTGTTGTTGTTG
82904373 TT
1 TT
82904375 GTTTATTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.25, T:0.69
Consensus pattern (15 bp):
TTATTGTTGTTGTTG
Found at i:82904407 original size:12 final size:12
Alignment explanation
Indices: 82904386--82904427 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
82904376 TTTATTGATG
*
82904386 ATTATTATTTAT
1 ATTATCATTTAT
*
82904398 ATTATCATTTCT
1 ATTATCATTTAT
82904410 ATTATCA-TTATT
1 ATTATCATTTA-T
82904422 ATTATC
1 ATTATC
82904428 CATGCATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 2 0.08
12 24 0.92
ACGTcount: A:0.31, C:0.10, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTATCATTTAT
Found at i:82909257 original size:27 final size:27
Alignment explanation
Indices: 82909227--82909314 Score: 74
Period size: 27 Copynumber: 3.2 Consensus size: 27
82909217 GTGGGGGTAA
82909227 GAAAATCAAAGCTGACATGGTGGAAGT
1 GAAAATCAAAGCTGACATGGTGGAAGT
* * * *
82909254 GAAAACGTGATAATC-GAGAGTGGGGGTAA--
1 GAAAA--TCA-AAGCTGACA-TGGTGG-AAGT
82909283 GAAAATCAAAGCTGACATGGTGGAAGT
1 GAAAATCAAAGCTGACATGGTGGAAGT
82909310 GAAAA
1 GAAAA
82909315 CCCCACTGAA
Statistics
Matches: 45, Mismatches: 8, Indels: 16
0.65 0.12 0.23
Matches are distributed among these distances:
25 2 0.04
26 8 0.18
27 15 0.33
29 10 0.22
30 8 0.18
31 2 0.04
ACGTcount: A:0.42, C:0.09, G:0.32, T:0.17
Consensus pattern (27 bp):
GAAAATCAAAGCTGACATGGTGGAAGT
Found at i:82909286 original size:56 final size:56
Alignment explanation
Indices: 82909200--82909315 Score: 232
Period size: 56 Copynumber: 2.1 Consensus size: 56
82909190 GATAAAGGGT
82909200 AAACGTGATAATCGAGAGTGGGGGTAAGAAAATCAAAGCTGACATGGTGGAAGTGA
1 AAACGTGATAATCGAGAGTGGGGGTAAGAAAATCAAAGCTGACATGGTGGAAGTGA
82909256 AAACGTGATAATCGAGAGTGGGGGTAAGAAAATCAAAGCTGACATGGTGGAAGTGA
1 AAACGTGATAATCGAGAGTGGGGGTAAGAAAATCAAAGCTGACATGGTGGAAGTGA
82909312 AAAC
1 AAAC
82909316 CCCACTGAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.41, C:0.09, G:0.33, T:0.17
Consensus pattern (56 bp):
AAACGTGATAATCGAGAGTGGGGGTAAGAAAATCAAAGCTGACATGGTGGAAGTGA
Found at i:82909287 original size:29 final size:29
Alignment explanation
Indices: 82909200--82909287 Score: 78
Period size: 29 Copynumber: 3.1 Consensus size: 29
82909190 GATAAAGGGT
82909200 AAACGTGATAATCGAGAGTGGGGGTAAGA
1 AAACGTGATAATCGAGAGTGGGGGTAAGA
* * * *
82909229 AAA--TCA-AAGCTGACA-TGGTGG-AAGTGA
1 AAACGTGATAATC-GAGAGTGGGGGTAA--GA
82909256 AAACGTGATAATCGAGAGTGGGGGTAAGA
1 AAACGTGATAATCGAGAGTGGGGGTAAGA
82909285 AAA
1 AAA
82909288 TCAAAGCTGA
Statistics
Matches: 43, Mismatches: 8, Indels: 16
0.64 0.12 0.24
Matches are distributed among these distances:
25 2 0.05
26 8 0.19
27 10 0.23
29 13 0.30
30 8 0.19
31 2 0.05
ACGTcount: A:0.41, C:0.08, G:0.34, T:0.17
Consensus pattern (29 bp):
AAACGTGATAATCGAGAGTGGGGGTAAGA
Found at i:82909305 original size:29 final size:29
Alignment explanation
Indices: 82909217--82909305 Score: 71
Period size: 29 Copynumber: 3.1 Consensus size: 29
82909207 ATAATCGAGA
82909217 GTGGGGGTAAGAAAATCAAAGCTGACATG
1 GTGGGGGTAAGAAAATCAAAGCTGACATG
** * * *
82909246 GTGGAAGT--GAAAACGTGATAATC-GAGA--
1 GTGGGGGTAAGAAAA--TCA-AAGCTGACATG
82909273 GTGGGGGTAAGAAAATCAAAGCTGACATG
1 GTGGGGGTAAGAAAATCAAAGCTGACATG
82909302 GTGG
1 GTGG
82909306 AAGTGAAAAC
Statistics
Matches: 42, Mismatches: 10, Indels: 16
0.62 0.15 0.24
Matches are distributed among these distances:
26 3 0.07
27 16 0.38
29 20 0.48
30 3 0.07
ACGTcount: A:0.37, C:0.09, G:0.36, T:0.18
Consensus pattern (29 bp):
GTGGGGGTAAGAAAATCAAAGCTGACATG
Found at i:82915967 original size:44 final size:44
Alignment explanation
Indices: 82915739--82916032 Score: 163
Period size: 44 Copynumber: 6.7 Consensus size: 44
82915729 TATTTCCCTA
* * *
82915739 AAGTTACAGTGGAGTAGATTGAAGATAACAAATCTTATCT-CTCTG
1 AAGTTACAGTGGAGCAGATTGAAG-TTATAAATCTTATCTCCT-TG
* * * * * * *
82915784 AAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCT-TTCTA
1 AAGTTACAGTGGAGCAGATTGAAGTTATAAATCTTATCTCCT-TG
* * * *
82915828 AAGTTGCAGTAGAGCAGGTTGAAGTTATAAGTCTTATCTCCTTG
1 AAGTTACAGTGGAGCAGATTGAAGTTATAAATCTTATCTCCTTG
* * * ** * * *
82915872 AAGTCT-TAGTGGAGTAGACTGAAGACAGCAAATCTCATCTCCCTG
1 AAGT-TACAGTGGAGCAGATTGAAGTTA-TAAATCTTATCTCCTTG
*
82915917 -A---A-AGTGGAGCAGATTGAAGTTGTAAATCTTATCTCCTTG
1 AAGTTACAGTGGAGCAGATTGAAGTTATAAATCTTATCTCCTTG
* * * ** * *
82915956 AAGTTACAGTGGAGCAGGTCGAAGATAGCGAATCTTATTTCCCTG
1 AAGTTACAGTGGAGCAGATTGAAGTTA-TAAATCTTATCTCCTTG
* * * * *
82916001 ACGTTGCAGTGTAACAGATTAAAGTTATAAAT
1 AAGTTACAGTGGAGCAGATTGAAGTTATAAAT
82916033 TATGGTAAAT
Statistics
Matches: 185, Mismatches: 54, Indels: 21
0.71 0.21 0.08
Matches are distributed among these distances:
39 14 0.08
40 16 0.09
43 1 0.01
44 87 0.47
45 67 0.36
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (44 bp):
AAGTTACAGTGGAGCAGATTGAAGTTATAAATCTTATCTCCTTG
Found at i:82916367 original size:44 final size:44
Alignment explanation
Indices: 82916248--82916379 Score: 140
Period size: 44 Copynumber: 3.0 Consensus size: 44
82916238 ACAAGTTGCG
* * * *
82916248 AACCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCA
1 AACCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTGAAGCTA-CA
* * * *
82916293 AATCTTATC-TCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTACA
1 AACCTTATCTTCT-TGAAGTTGTAGTGGAGCAGATTGAAGCTACA
* * *
82916337 AACCTTATCTTCTTAAAGTTGTAATGGAGCATATTGAAGCTAC
1 AACCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTGAAGCTAC
82916380 TTGAAGAGAA
Statistics
Matches: 70, Mismatches: 15, Indels: 5
0.78 0.17 0.06
Matches are distributed among these distances:
44 35 0.50
45 35 0.50
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (44 bp):
AACCTTATCTTCTTGAAGTTGTAGTGGAGCAGATTGAAGCTACA
Found at i:82917890 original size:17 final size:16
Alignment explanation
Indices: 82917868--82917899 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
82917858 TAGCCCTTCC
82917868 TTATTAATATTATTATG
1 TTATTAAT-TTATTATG
82917885 TTATTAATTTATTAT
1 TTATTAATTTATTAT
82917900 TTAGCATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTATTAATTTATTATG
Found at i:82917927 original size:14 final size:14
Alignment explanation
Indices: 82917910--82917940 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
82917900 TTAGCATTTA
82917910 TTTATTTATTTATT
1 TTTATTTATTTATT
*
82917924 TTTATTTTTTTATT
1 TTTATTTATTTATT
82917938 TTT
1 TTT
82917941 CACTACAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTATTTATTTATT
Found at i:82918274 original size:37 final size:36
Alignment explanation
Indices: 82918232--82918584 Score: 155
Period size: 35 Copynumber: 9.5 Consensus size: 36
82918222 TACGGCAACA
*
82918232 TTAAAAAGGTTGCTATAGTTCTTGTCTAAGGCAACTT
1 TTAAAAAGGTTGC-ATAGATCTTGTCTAAGGCAACTT
* * * *
82918269 TTAAAAACTGTTGGGATAGATC-CGTCTAAGGCAAC-C
1 TTAAAAA-GGTT-GCATAGATCTTGTCTAAGGCAACTT
* *
82918305 TTAAAAAGGTTGGCATAGACCTTGTCTAAGACAACTT
1 TTAAAAAGGTT-GCATAGATCTTGTCTAAGGCAACTT
* * * * *
82918342 ATAAAAAAAAGGTTGGGATAGAGC-CGTCTAAGGCAAC-C
1 -T--TAAAAAGGTT-GCATAGATCTTGTCTAAGGCAACTT
* * *
82918380 TTAAAAAGGTTGGGATAGACCTTGTCTAAGACAACTT
1 TTAAAAAGGTT-GCATAGATCTTGTCTAAGGCAACTT
* * * * *
82918417 ATAAAAGAAAAGGTTGGGATAGA-CCTATCTAAGGCAAC-C
1 -T--TA-AAAAGGTT-GCATAGATCTTGTCTAAGGCAACTT
* * * *
82918456 TTAAATAGGTTGGGATAGACCATGTCTAAGGCAACCTT
1 TTAAAAAGGTT-GCATAGATCTTGTCTAAGGCAA-CTT
* * * *** *
82918494 TAAAAAATGTTGGGATAGA-CCCATCTAAGGCAAC-A
1 TTAAAAAGGTT-GCATAGATCTTGTCTAAGGCAACTT
* * * *
82918529 TTAAAATGGTTGGGATGGACCTTGTCTAAGGCAACTT
1 TTAAAAAGGTT-GCATAGATCTTGTCTAAGGCAACTT
82918566 TTAAAAAAGGTTGGCATAG
1 TT-AAAAAGGTT-GCATAG
82918585 GTCCATTTAA
Statistics
Matches: 247, Mismatches: 50, Indels: 37
0.74 0.15 0.11
Matches are distributed among these distances:
35 59 0.24
36 55 0.22
37 34 0.14
38 41 0.17
39 12 0.05
40 30 0.12
41 16 0.06
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (36 bp):
TTAAAAAGGTTGCATAGATCTTGTCTAAGGCAACTT
Found at i:82918332 original size:36 final size:36
Alignment explanation
Indices: 82918156--82918853 Score: 377
Period size: 36 Copynumber: 19.1 Consensus size: 36
82918146 ATCAATAACG
* * *
82918156 ACCTTGAAAAGGGTTGGGATAGACCTAGTC-AAGACCA
1 ACCTT-AAAAAGGTTGGGATAGACCTTGTCTAAG-GCA
** * * * * *
82918193 ACCTTTTCAAATGTTGTGAGAAACCTTG-CTACGGCA
1 ACC-TTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* ** **
82918229 ACATTAAAAAGGTTGCTATAGTTCTTGTCTAAGGCA
1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
82918265 ACTTTTAAAAACTGTTGGGATAGATCC--GTCTAAGGCA
1 AC-CTTAAAAA-GGTTGGGATAGA-CCTTGTCTAAGGCA
* *
82918302 ACCTTAAAAAGGTTGGCATAGACCTTGTCTAAGACA
1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
*
82918338 ACTTATAAAAAAAAGGTTGGGATAGAGCC--GTCTAAGGCA
1 ACCT-T---AAAAAGGTTGGGATAGA-CCTTGTCTAAGGCA
*
82918377 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGACA
1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
82918413 ACTTATAAAAGAAAAGGTTGGGATAGACC-TATCTAAGGCA
1 ACCT-T---A-AAAAGGTTGGGATAGACCTTGTCTAAGGCA
* *
82918453 ACCTTAAATAGGTTGGGATAGACCATGTCTAAGGCA
1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* **
82918489 ACCTTTAAAAAATGTTGGGATAGACC-CATCTAAGGCA
1 ACC-TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * *
82918526 ACATTAAAATGGTTGGGATGGACCTTGTCTAAGGCA
1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * * * *
82918562 ACTTTTAAAAAAGGTTGGCATAGGTCCAT-T-TAAAGCA
1 AC-CTT-AAAAAGGTTGGGATA-GACCTTGTCTAAGGCA
** * ** * *
82918599 ACCTTGGAAAGGTTGGGATAAATATTGTCTAATGAA
1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * ** *
82918635 ACCTTTAAAAAAGGTTGCGATAAACC-CATCTAAGGTA
1 ACC-TT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * * * *
82918672 ACCTTAAAAAGGTTGAGATAAATCTCGTCTAAGGAA
1 ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * * * * *
82918708 ACTTTTAGAAAAGGTTGGTATTGACC-TATCTAAGACT
1 AC-CTTA-AAAAGGTTGGGATAGACCTTGTCTAAGGCA
* **
82918745 ACGTTAAAAATTTTGGGATAGACCTAT-T-TACA-GCA
1 ACCTTAAAAAGGTTGGGATAGACCT-TGTCTA-AGGCA
* * * * *
82918780 ACATTAAAAAAGGTTAGGATAGACCTTTTCTAATGTA
1 ACCTT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA
* * * *
82918817 A-CTTAAAAAAAGTTGGGATAAACC-CGTCTAAAGCA
1 ACCTT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCA
82918852 AC
1 AC
82918854 TTTTTTTTAC
Statistics
Matches: 505, Mismatches: 114, Indels: 85
0.72 0.16 0.12
Matches are distributed among these distances:
34 5 0.01
35 135 0.27
36 138 0.27
37 92 0.18
38 68 0.13
39 18 0.04
40 29 0.06
41 20 0.04
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (36 bp):
ACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCA
Found at i:82918573 original size:73 final size:73
Alignment explanation
Indices: 82918225--82918857 Score: 567
Period size: 73 Copynumber: 8.6 Consensus size: 73
82918215 ACCTTGCTAC
* ** ** ** *
82918225 GGCAACATTAAAAAGGTTGCTATAGTTCTTGTCTAAGGCAACTTTTAAAAACTGTTGGGATAGAT
1 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGAC
*
82918290 CCGTCTAA
66 CCATCTAA
* * *
82918298 GGCAACCTTAAAAAGGTTGGCATAGACCTTGTCTAAGACAACTTATAAAAAAAAGGTTGGGATAG
1 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTT-T-TAAAAAAGGTTGGGATAG
* *
82918363 AGCCGTCTAA
64 ACCCATCTAA
* *
82918373 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGACAACTTATAAAAGAAAAGGTTGGGATA
1 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTT-T-TAA-AAAAGGTTGGGATA
*
82918438 GACCTATCTAA
63 GACCCATCTAA
* * * *
82918449 GGCAACCTTAAATAGGTTGGGATAGACCATGTCTAAGGCAACCTTTAAAAAATGTTGGGATAGAC
1 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGAC
82918514 CCATCTAA
66 CCATCTAA
* * * * **
82918522 GGCAACATTAAAATGGTTGGGATGGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGCATAGGT
1 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGAC
*
82918587 CCATTTAA
66 CCATCTAA
* ** * ** * * * * *
82918595 AGCAACCTTGGAAAGGTTGGGATAAATATTGTCTAATGAAACCTTTAAAAAAGGTTGCGATAAAC
1 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGAC
82918660 CCATCTAA
66 CCATCTAA
* * * * * * * * *
82918668 GGTAACCTTAAAAAGGTTGAGATAAATCTCGTCTAAGGAAACTTTTAGAAAAGGTTGGTATTGAC
1 GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGAC
*
82918733 CTATCTAA
66 CCATCTAA
* * * ** * *
82918741 GACTACGTTAAAAATTTTGGGATAGACCTAT-T-TACA-GCAAC-ATTAAAAAAGGTTAGGATAG
1 GGCAACCTTAAAAAGGTTGGGATAGACCT-TGTCTA-AGGCAACTTTTAAAAAAGGTTGGGATAG
**
82918802 ACCTTTTCTAA
64 ACC-CATCTAA
* * * * * *
82918813 TGTAA-CTTAAAAAAAGTTGGGATAAACC-CGTCTAAAGCAACTTTT
1 GGCAACCTT-AAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTT
82918858 TTTTACAACG
Statistics
Matches: 457, Mismatches: 92, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
71 22 0.05
72 36 0.08
73 260 0.57
74 3 0.01
75 74 0.16
76 62 0.14
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (73 bp):
GGCAACCTTAAAAAGGTTGGGATAGACCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGATAGAC
CCATCTAA
Found at i:82918657 original size:38 final size:38
Alignment explanation
Indices: 82918606--82918724 Score: 127
Period size: 38 Copynumber: 3.2 Consensus size: 38
82918596 GCAACCTTGG
* * * *
82918606 AAAGGTTGGGATAAATATTGTCTAATGAAACCTTTAAA
1 AAAGGTTGAGATAAATCTCGTCTAAGGAAACCTTTAAA
* * * *
82918644 AAAGGTTGCGATAAA-CCCATCTAAGGTAACC-TT-AA
1 AAAGGTTGAGATAAATCTCGTCTAAGGAAACCTTTAAA
* *
82918679 AAAGGTTGAGATAAATCTCGTCTAAGGAAACTTTTAGA
1 AAAGGTTGAGATAAATCTCGTCTAAGGAAACCTTTAAA
82918717 AAAGGTTG
1 AAAGGTTG
82918725 GTATTGACCT
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
35 16 0.25
36 14 0.22
37 12 0.18
38 23 0.35
ACGTcount: A:0.40, C:0.12, G:0.20, T:0.28
Consensus pattern (38 bp):
AAAGGTTGAGATAAATCTCGTCTAAGGAAACCTTTAAA
Found at i:82931885 original size:40 final size:39
Alignment explanation
Indices: 82931830--82932036 Score: 224
Period size: 40 Copynumber: 5.2 Consensus size: 39
82931820 TGAATGATAC
* *
82931830 CCGGGCTAA-ATCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTG-TTATAT
*
82931870 CCGGGCTAAGACCCGAAGGCATTCGT-CGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
*
82931909 CCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGTTATAT
* * *
82931949 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-TACCAAAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGT--TATAT
* * **
82931989 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT-GTTATAT
82932029 CC-GGCTAA
1 CCGGGCTAA
82932037 ATTCCGAAGA
Statistics
Matches: 146, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.01
39 41 0.28
40 102 0.70
41 1 0.01
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGTTATAT
Found at i:82932045 original size:79 final size:79
Alignment explanation
Indices: 82931830--82932036 Score: 249
Period size: 79 Copynumber: 2.6 Consensus size: 79
82931820 TGAATGATAC
* * *
82931830 CCGGGCTAA-ATCCCGAAGGCATTTATGCTAGTGATTATATCCGGGCTAAGACCCGAAGGCATTC
1 CCGGGCTAAGA-CCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTC
* *** *
82931894 GTCGAGTTGTTATAT
65 GTCAAGTTACCAAAT
* * *
82931909 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCATTT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTC
82931973 GTGCAAGTTACCAAAT
65 GT-CAAGTTACCAAAT
* *
82931989 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAA
82932037 ATTCCGAAGA
Statistics
Matches: 109, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
78 2 0.02
79 61 0.56
80 43 0.39
81 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGGTTATATCCGGGCTAAGACCCGAAGGCATTCG
TCAAGTTACCAAAT
Found at i:82943654 original size:47 final size:47
Alignment explanation
Indices: 82943545--82943655 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
82943535 CCTAGATAAG
*
82943545 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
82943592 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
82943639 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
82943656 ACTCAATGTC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
46 1 0.02
47 53 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:82948035 original size:35 final size:35
Alignment explanation
Indices: 82948008--82948173 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
82947998 CATGGCAAAG
*
82948008 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
82948043 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
82948078 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
82948118 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
82948153 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
82948174 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:82948127 original size:75 final size:75
Alignment explanation
Indices: 82948008--82948178 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
82947998 CATGGCAAAG
** *
82948008 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
82948067 CCATACTGAGC
65 CCATACCGAGC
82948078 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
82948143 CATACCGAGT
66 CATACCGAGC
**
82948153 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
82948179 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:82955527 original size:35 final size:35
Alignment explanation
Indices: 82955500--82955665 Score: 172
Period size: 35 Copynumber: 4.6 Consensus size: 35
82955490 CATGGCAAAG
*
82955500 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
82955535 TGTGAAATGTAGGTATGGTATTATCCATACTGAGC
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
*
82955570 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGC
** * * * *
82955610 TAAGAAATGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGC
**
82955645 TGAAAAATGTAGGTATGGTAT
1 TGTGAAATGTAGGTATGGTAT
82955666 TTCAATGAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
34 1 0.01
35 79 0.70
37 2 0.02
38 3 0.03
40 28 0.25
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGC
Found at i:82955619 original size:75 final size:75
Alignment explanation
Indices: 82955500--82955670 Score: 221
Period size: 75 Copynumber: 2.4 Consensus size: 75
82955490 CATGGCAAAG
** *
82955500 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGTTGTGAAATGTAGGTATGGTATTAT-
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATT-TC
*
82955559 CCATACTGAGC
65 CCATACCGAGC
82955570 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
1 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
*
82955635 CATACCGAGT
66 CATACCGAGC
**
82955645 TGAAAAATGTAGGTATGGTATT-TCAA
1 TGTGAAATGTAGGTATGGTATTATCAA
82955671 TGAGGAAAAC
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
70 18 0.20
73 4 0.05
74 5 0.06
75 61 0.69
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (75 bp):
TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGTTAAGAAATGTAGGTATGGCATTTCC
CATACCGAGC
Found at i:82957056 original size:141 final size:141
Alignment explanation
Indices: 82956802--82957300 Score: 752
Period size: 141 Copynumber: 3.6 Consensus size: 141
82956792 GGGGGCGTTA
* *
82956802 CATACATATTCCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTATATCCCAACA
1 CATACATATCCCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACA
*
82956867 CTTAAGAAAGTGTCGCCACAATAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATTCAAGC
66 CTTAAGAAAGTGTCGCCAAAATAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATTCAAGC
*
82956932 GTTGCCTTAGG
131 GTTGCTTTAGG
82956943 CATACATATCCCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACA
1 CATACATATCCCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACA
*
82957008 CATAAGAAAGTGTCGCCAAAATAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATTCAAGC
66 CTTAAGAAAGTGTCGCCAAAATAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATTCAAGC
82957073 GTTGCTTTAGG
131 GTTGCTTTAGG
* * * *
82957084 CATACATATCCCAACCCTTATACAAAGAGTTGCCAAAAGCATATCTTGGCATGTCTATCGCAACA
1 CATACATATCCCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACA
* * * * * *** *
82957149 CTTAAAAAAGCGTCGCCATAATAGTGTCGTCTTAGGGCTAGAC-AACGTCAACTCTTATTTAAGC
66 CTTAAGAAAGTGTCGCCAAAATAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATTCAAGC
*
82957213 GTTGCTTTAAG
131 GTTGCTTTAGG
* * * * *
82957224 CATGCATATCCCAACCCTTATACAAAAAGTTGGC-GAAGCGTATGTTGGCCA-GTCTATCCCAAC
1 CATACATATCCCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGG-CATGTCTATCCCAAC
82957287 ACTTAAGAAAGTGT
65 ACTTAAGAAAGTGT
82957301 TGCCCTACAA
Statistics
Matches: 328, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
139 34 0.10
140 60 0.18
141 234 0.71
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (141 bp):
CATACATATCCCAACCCTTATACAAAGAGTTGCCTAAAGCGTATATTGGCATGTCTATCCCAACA
CTTAAGAAAGTGTCGCCAAAATAGTGTCGTCTTAGGACTACACAAAAACCAACTCTTATTCAAGC
GTTGCTTTAGG
Found at i:82957501 original size:3 final size:3
Alignment explanation
Indices: 82957493--82957552 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
82957483 CAAAGTTTAG
82957493 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
82957541 ATT ATT ATT ATT
1 ATT ATT ATT ATT
82957553 GTTGTTGTTG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:82960710 original size:18 final size:19
Alignment explanation
Indices: 82960687--82960727 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
82960677 ACATTATATG
82960687 AAAAA-TAAAATAAAATAA
1 AAAAATTAAAATAAAATAA
* *
82960705 AAAAATTAAATTAAATTAA
1 AAAAATTAAAATAAAATAA
82960724 AAAA
1 AAAA
82960728 CAAATAACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
AAAAATTAAAATAAAATAA
Found at i:82961123 original size:29 final size:29
Alignment explanation
Indices: 82961091--82961148 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
82961081 ATAAAATACA
* *
82961091 TTAATAGTA-ATGTATTAGATTGAACATTT
1 TTAA-AGTATATGTATCACATTGAACATTT
*
82961120 TTAAAGTATATGTATCACATTGGACATTT
1 TTAAAGTATATGTATCACATTGAACATTT
82961149 AATGAAAGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 4 0.16
29 21 0.84
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (29 bp):
TTAAAGTATATGTATCACATTGAACATTT
Found at i:82964985 original size:47 final size:48
Alignment explanation
Indices: 82964855--82964985 Score: 131
Period size: 47 Copynumber: 2.8 Consensus size: 48
82964845 TAGTTGGCAG
* * * *
82964855 TTCATCTACTTGACCAGTGGTTTATCCACAATATATTCTAGTCGGCAA
1 TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATTCTAGTCAGCAA
* * * * * *
82964903 TT-ATTTGCTAGACCAATGGTTTATCCGCAACGTATTTTAGTCAGC-T
1 TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATTCTAGTCAGCAA
* * *
82964949 TTCATCTGCTCGATCAGTGGTTTATCCATAATGTATT
1 TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATT
82964986 AATAGCTTTT
Statistics
Matches: 65, Mismatches: 17, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
46 2 0.03
47 61 0.94
48 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (48 bp):
TTCATCTGCTAGACCAGTGGTTTATCCACAATGTATTCTAGTCAGCAA
Found at i:82966191 original size:29 final size:29
Alignment explanation
Indices: 82966114--82966191 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
82966104 GCAAAGGTTA
*
82966114 TATGACA-TTTTGAAAAGACACTTATTGT
1 TATGACATTTTTGAAAAGACACTTAATGT
* *
82966142 TATGATC-TTTCTGAAATGACACTTAATGT
1 TATGA-CATTTTTGAAAAGACACTTAATGT
* *
82966171 TATGACATTTTTTAAACGACA
1 TATGACATTTTTGAAAAGACA
82966192 TTTTATCATA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
28 6 0.15
29 35 0.85
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (29 bp):
TATGACATTTTTGAAAAGACACTTAATGT
Found at i:82977025 original size:30 final size:30
Alignment explanation
Indices: 82976981--82977051 Score: 74
Period size: 30 Copynumber: 2.3 Consensus size: 30
82976971 AATGATTTAT
* *
82976981 ATTTTATAATTTTTTA-AAGGATTAAATTATA
1 ATTTTATTA-TTTTTAGAA-GATTAAAGTATA
*
82977012 ATTTTATTATTTTTAGAAG-TTAAAAGTAAA
1 ATTTTATTATTTTTAGAAGATT-AAAGTATA
82977042 ATTTTATTAT
1 ATTTTATTAT
82977052 GTACAATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
29 2 0.06
30 23 0.66
31 10 0.29
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (30 bp):
ATTTTATTATTTTTAGAAGATTAAAGTATA
Found at i:82995020 original size:30 final size:31
Alignment explanation
Indices: 82994980--82995045 Score: 82
Period size: 34 Copynumber: 2.1 Consensus size: 31
82994970 TTTGACATTA
82994980 TTTTTTTAAGC-A-TTAAATTGAAAATGAAT
1 TTTTTTTAAGCGACTTAAATTGAAAATGAAT
*
82995009 TTTTTTATAAGCGACGCTTGAATTGAAAATGAAT
1 TTTTTT-TAAGCGA--CTTAAATTGAAAATGAAT
82995043 TTT
1 TTT
82995046 ATTAAGAGGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
29 6 0.19
30 5 0.16
31 1 0.03
34 19 0.61
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (31 bp):
TTTTTTTAAGCGACTTAAATTGAAAATGAAT
Found at i:82995186 original size:22 final size:24
Alignment explanation
Indices: 82995143--82995186 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
82995133 TGATAATATG
82995143 TTTTGATATAACAAATTAAAGTGT
1 TTTTGATATAACAAATTAAAGTGT
*
82995167 TTTTGA-ATAA-AAGTTAAAGT
1 TTTTGATATAACAAATTAAAGT
82995187 TGAACAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.43, C:0.02, G:0.14, T:0.41
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTGT
Found at i:82995423 original size:21 final size:21
Alignment explanation
Indices: 82995397--82995437 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
82995387 CAATGATTTA
82995397 CAAAAAGTATCAATACCTTTC
1 CAAAAAGTATCAATACCTTTC
*
82995418 CAAAAAGTATCGATACCTTT
1 CAAAAAGTATCAATACCTTT
82995438 TACCAGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (21 bp):
CAAAAAGTATCAATACCTTTC
Found at i:82997768 original size:19 final size:18
Alignment explanation
Indices: 82997744--82997791 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
82997734 ACCATTTTGC
82997744 ATAAATTGTGAAATAAGTG
1 ATAAATTGTGAAATAA-TG
*
82997763 ATAAATGTGTGCAATAATG
1 ATAAAT-TGTGAAATAATG
*
82997782 A-GAATTGTGA
1 ATAAATTGTGA
82997792 GCTAATCCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 4 0.16
18 3 0.12
19 9 0.36
20 9 0.36
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.31
Consensus pattern (18 bp):
ATAAATTGTGAAATAATG
Found at i:82998314 original size:46 final size:46
Alignment explanation
Indices: 82998247--82998368 Score: 226
Period size: 46 Copynumber: 2.7 Consensus size: 46
82998237 TCATTTGTGT
82998247 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
*
82998293 GCTAGTGTAAGACATGTCTGGGACATGCAACGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
*
82998339 GCTAGTATAAGACATGTCTGGGACATGCAT
1 GCTAGTGTAAGACATGTCTGGGACATGCAT
82998369 TAGCCTCGCG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
Found at i:83000329 original size:15 final size:15
Alignment explanation
Indices: 83000309--83000341 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
83000299 CAGGAGAGAG
83000309 AAACCTCCGATAGAC
1 AAACCTCCGATAGAC
*
83000324 AAACCTCCGGTAGAC
1 AAACCTCCGATAGAC
83000339 AAA
1 AAA
83000342 ATTCGTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.42, C:0.30, G:0.15, T:0.12
Consensus pattern (15 bp):
AAACCTCCGATAGAC
Found at i:83005935 original size:46 final size:47
Alignment explanation
Indices: 83005861--83006122 Score: 176
Period size: 46 Copynumber: 5.6 Consensus size: 47
83005851 CATTTGTGTA
* * *
83005861 CTAGTGCAAGACATGTTTGGGACATGCATCAACCA-CAATATGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGAG
* *** * * *
83005907 CCAGTGTAAGACATGTCTGGGACATGCAT-TGGCATTGAGACGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGAG
* * ** * * *
83005953 CTAGTGTAAGACATGTCTAGGACATGCTTC-GGCATTGAGACGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGAG
* * * *
83005999 CTAGTGTAAGACATGTATGGGACATGCATTAGCC-TCGCGATAT-ACAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAACCAT--CGATATGA-GAG
* * * * *
83006047 CTAGTGTATGACCTTTCTGGGACATGGCATCAA-CACCAATGGATGAGAG
1 CTAGTGTAAGACATGTCTGGGACAT-GCATCAACCATCGAT--ATGAGAG
*
83006096 CCAGTGTAAGACCATGTCTGGGACATG
1 CTAGTGTAAGA-CATGTCTGGGACATG
83006123 GCGTCGGCAT
Statistics
Matches: 169, Mismatches: 35, Indels: 21
0.75 0.16 0.09
Matches are distributed among these distances:
45 2 0.01
46 102 0.60
47 6 0.04
48 27 0.16
49 19 0.11
50 13 0.08
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (47 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAACCATCGATATGAGAG
Found at i:83007310 original size:20 final size:21
Alignment explanation
Indices: 83007271--83007310 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
83007261 GTCATAACGG
*
83007271 CCACACGGGCGTGTTGCCCTT
1 CCACACGGGCATGTTGCCCTT
*
83007292 CCACATGGGCATG-TGCCCT
1 CCACACGGGCATGTTGCCCT
83007311 GTTTCTAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.12, C:0.38, G:0.28, T:0.23
Consensus pattern (21 bp):
CCACACGGGCATGTTGCCCTT
Found at i:83008213 original size:26 final size:26
Alignment explanation
Indices: 83008178--83008339 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
83008168 TGATACAAAT
*
83008178 TGATGATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
83008204 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
83008230 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
83008256 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
83008282 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
83008308 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
83008334 TGATAA
1 TGATAA
83008340 GTGTCGTAAC
Statistics
Matches: 133, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 133 1.00
ACGTcount: A:0.33, C:0.06, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:83012138 original size:44 final size:43
Alignment explanation
Indices: 83011992--83012406 Score: 273
Period size: 44 Copynumber: 9.6 Consensus size: 43
83011982 AATTTTCAGC
* * * * * *
83011992 CTGTTACCCTACTGTTTAGAGGATTAAGGCTT-GTCATCTTTGAT
1 CTGTT-CCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGAT
* * * * *
83012036 CTGTTTCCCTACTGCTTA-GGGTTTTA-GATC-T-GTAATTCAAC
1 CTG-TTCCCTACTGCTTAGGGGTTTAAGGTTCTTCGT-CTTCGAT
83012077 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
1 CTGTT-CCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
* * * * ** * *
83012121 CTGCTCCACTACTGCTTAGGGAG-ATAA-GATCTGC-AATTCAAC
1 CTGTTCC-CTACTGCTTAGGG-GTTTAAGGTTCTTCGTCTTCGAT
83012163 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
1 CTGTT-CCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
* * * * ** * *
83012207 CTGCTCCACTACTGCTTAGGGAG-ATAA-GATCTGC-AATTCAAC
1 CTGTTCC-CTACTGCTTAGGG-GTTTAAGGTTCTTCGTCTTCGAT
83012249 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
1 CTGTT-CCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
* * * * ** * *
83012293 CTGCTCCACTACTGCTTAGGGAG-ATAA-GATCTGC-AATTCAAC
1 CTGTTCC-CTACTGCTTAGGG-GTTTAAGGTTCTTCGTCTTCGAT
83012335 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
1 CTGTT-CCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
*
83012379 CTGTTTCCCTACTGCTTAGGGGGTTAAG
1 CTG-TTCCCTACTGCTTAGGGGTTTAAG
83012407 ATCTGTAAAT
Statistics
Matches: 280, Mismatches: 64, Indels: 54
0.70 0.16 0.14
Matches are distributed among these distances:
40 3 0.01
41 23 0.08
42 80 0.29
43 50 0.18
44 115 0.41
45 9 0.03
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (43 bp):
CTGTTCCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGAT
Found at i:83012175 original size:86 final size:86
Alignment explanation
Indices: 83011986--83012411 Score: 662
Period size: 86 Copynumber: 5.0 Consensus size: 86
83011976 ATATTTAATT
* * * * * * * *
83011986 TTCAGCCTGTTACCCTACTGTTTAGAGGATTAAGGCTT-GTCATCTTTGATCTGTTTCC-CTACT
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TTCTTCGTCTTCGATCTG-CTCCACTACT
** * *
83012049 GCTTAGGG-TTTTAGATCTGTAA
64 GCTTAGGGAGATAAGATCTGCAA
83012071 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
83012136 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
83012157 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
83012222 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
83012243 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
83012308 TTAGGGAGATAAGATCTGCAA
66 TTAGGGAGATAAGATCTGCAA
*
83012329 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGTTTCC-CTACTG
1 TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG-CTCCACTACTG
* *
83012393 CTTAGGGGGTTAAGATCTG
65 CTTAGGGAGATAAGATCTG
83012412 TAAATTTTCA
Statistics
Matches: 322, Mismatches: 15, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
84 5 0.02
85 56 0.17
86 258 0.80
87 3 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (86 bp):
TTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGC
TTAGGGAGATAAGATCTGCAA
Found at i:83029459 original size:83 final size:85
Alignment explanation
Indices: 83029298--83029612 Score: 561
Period size: 83 Copynumber: 3.8 Consensus size: 85
83029288 TGATGCAATG
83029298 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCAC-ACT-CTTAGGA
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGA
83029361 GATAAGATCTGCAATTCAAC
66 GATAAGATCTGCAATTCAAC
83029381 CTGTTACCCTACTGCTTAGGGGTTTAAGG-TCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGA
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGA
83029445 GATAAGATCT-CAATTCAAC
66 GATAAGATCTGCAATTCAAC
83029464 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTA-GG
83029529 AGATAAGATCTGCAATTCAAC
65 AGATAAGATCTGCAATTCAAC
*
83029550 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTC-TCGTCTTCGATCTGTTTCC-CTACTGCTTAGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGG
83029613 GGGTTAAGAT
Statistics
Matches: 225, Mismatches: 1, Indels: 11
0.95 0.00 0.05
Matches are distributed among these distances:
82 23 0.10
83 70 0.31
84 51 0.23
85 37 0.16
86 44 0.20
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (85 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGA
GATAAGATCTGCAATTCAAC
Found at i:83029579 original size:169 final size:166
Alignment explanation
Indices: 83029298--83029612 Score: 562
Period size: 169 Copynumber: 1.9 Consensus size: 166
83029288 TGATGCAATG
83029298 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACACTCTTAGGAGA
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACACTCTTAGGAGA
83029363 TAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGG-TCTTCGTCTTCGATCTG
66 TAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTC-TCGTCTTCGATCTG
83029427 -CTCCACTACTGCTTAGGAGATAAGATCTCAATTCAAC
130 TCTCC-CTACTGCTTAGGAGATAAGATCTCAATTCAAC
83029464 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCAC-ACT-CTTA-GG
83029529 AGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTCGTCTTCGATC
63 AGATAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTCGTCTTCGATC
*
83029594 TGTTTCCCTACTGCTTAGG
128 TGTCTCCCTACTGCTTAGG
83029613 GGGTTAAGAT
Statistics
Matches: 143, Mismatches: 1, Indels: 7
0.95 0.01 0.05
Matches are distributed among these distances:
166 53 0.37
167 3 0.02
168 4 0.03
169 78 0.55
170 5 0.03
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.35
Consensus pattern (166 bp):
CTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTTCGTCTTCGATCTGCTCCACACTCTTAGGAGA
TAAGATCTGCAATTCAACCTGTTACCCTACTGCTTAGGGGTTTAAGGTTCTCGTCTTCGATCTGT
CTCCCTACTGCTTAGGAGATAAGATCTCAATTCAAC
Found at i:83041830 original size:40 final size:40
Alignment explanation
Indices: 83041785--83041952 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
83041775 CGGAATATAA
83041785 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * * *
83041825 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTGGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
83041865 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
83041905 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
83041945 CCGGATAT
1 CCGGATAT
83041953 TATTCAATTT
Statistics
Matches: 105, Mismatches: 22, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 104 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:83048773 original size:28 final size:26
Alignment explanation
Indices: 83048731--83048805 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
83048721 AAAAGTAGCT
* *
83048731 AAATTACTATAATACCCCTATGTATGAA
1 AAATTACTGTTATACCCCTA-G-ATGAA
* *
83048759 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGAA
*
83048785 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
83048806 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.21, G:0.11, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGAA
Found at i:83048950 original size:27 final size:27
Alignment explanation
Indices: 83048909--83049048 Score: 174
Period size: 27 Copynumber: 5.2 Consensus size: 27
83048899 GAGGAAGCGT
*
83048909 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
83048936 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
83048963 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
83048990 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * * *
83049018 TTTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
83049044 TCTGG
1 TCTGG
83049049 CAGCCATGCT
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
26 4 0.04
27 82 0.82
28 14 0.14
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:83048994 original size:54 final size:55
Alignment explanation
Indices: 83048909--83049048 Score: 194
Period size: 54 Copynumber: 2.6 Consensus size: 55
83048899 GAGGAAGCGT
* * *
83048909 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* *
83048963 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
* * *
83049018 TTTGGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
83049049 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
54 60 0.78
55 17 0.22
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACAAATATCTGTA
Found at i:83052384 original size:7 final size:7
Alignment explanation
Indices: 83052372--83052397 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
83052362 GTTCAAAAAT
83052372 TTTATTA
1 TTTATTA
83052379 TTTATTA
1 TTTATTA
83052386 TTTATTA
1 TTTATTA
83052393 TTTAT
1 TTTAT
83052398 GAGTTAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTA
Found at i:83053860 original size:33 final size:32
Alignment explanation
Indices: 83053787--83053864 Score: 84
Period size: 33 Copynumber: 2.4 Consensus size: 32
83053777 CAGTATTTAT
* * * **
83053787 ATGTAAGACCATAGCTGGGCTATGGCATTGTG
1 ATGTAAGACCATAACTGGGCTATAGCACTACG
*
83053819 ATGATAAGACCATAACTGGGTTATAGCACTACG
1 ATG-TAAGACCATAACTGGGCTATAGCACTACG
83053852 AATGTAAGACCAT
1 -ATGTAAGACCAT
83053865 GGCAGAGTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 3 0.08
33 32 0.84
34 3 0.08
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (32 bp):
ATGTAAGACCATAACTGGGCTATAGCACTACG
Found at i:83057834 original size:20 final size:19
Alignment explanation
Indices: 83057800--83057840 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
83057790 AGAATAACAG
*
83057800 ATTAAAAAATTATATCTTA
1 ATTAAAAAATCATATCTTA
*
83057819 ATTAAAAAATCCATATTTTA
1 ATTAAAAAAT-CATATCTTA
83057839 AT
1 AT
83057841 CACTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTAAAAAATCATATCTTA
Found at i:83060057 original size:20 final size:20
Alignment explanation
Indices: 83060002--83060043 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
83059992 CCATTATTTT
*
83060002 TTAATTAAA-AGAGAAATGAA
1 TTAATCAAATAGA-AAATGAA
83060022 TTAATCAAATAGAAAATGAA
1 TTAATCAAATAGAAAATGAA
83060042 TT
1 TT
83060044 GATAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.57, C:0.02, G:0.12, T:0.29
Consensus pattern (20 bp):
TTAATCAAATAGAAAATGAA
Found at i:83060246 original size:2 final size:2
Alignment explanation
Indices: 83060239--83060286 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
83060229 TTATTCACGG
83060239 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83060281 AT AT AT
1 AT AT AT
83060287 TAAGGGAAGG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83061016 original size:26 final size:27
Alignment explanation
Indices: 83060987--83061048 Score: 92
Period size: 26 Copynumber: 2.3 Consensus size: 27
83060977 TATCGAAACT
83060987 TATAAAATA-TATAAAAAT-ATTTAAAA
1 TATAAAATATTA-AAAAATAATTTAAAA
83061013 TATAAAATATTAAAAAATAATTTAAAA
1 TATAAAATATTAAAAAATAATTTAAAA
83061040 TATTAAAAT
1 TA-TAAAAT
83061049 CCTATATCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
26 15 0.45
27 12 0.36
28 6 0.18
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (27 bp):
TATAAAATATTAAAAAATAATTTAAAA
Found at i:83061017 original size:17 final size:16
Alignment explanation
Indices: 83060995--83061032 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
83060985 CTTATAAAAT
83060995 ATATAAAAATATTTAAA
1 ATATAAAAATA-TTAAA
83061012 ATAT-AAAATATTAAA
1 ATATAAAAATATTAAA
*
83061027 AAATAA
1 ATATAA
83061033 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 7 0.37
17 4 0.21
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATATAAAAATATTAAA
Found at i:83063949 original size:27 final size:27
Alignment explanation
Indices: 83063919--83064005 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
83063909 AGAATGGTGA
83063919 GTAT-GAAAAACTTTGAACA-AATAATAC
1 GTATGGAAAAA-TTTGAA-AGAATAATAC
* *
83063946 GTATGGCAAAATTTGAAAGAATAGTAC
1 GTATGGAAAAATTTGAAAGAATAATAC
* ** * * *
83063973 GTATAGTGAACTCTGAAGGAATAATAC
1 GTATGGAAAAATTTGAAAGAATAATAC
83064000 GTATGG
1 GTATGG
83064006 CGAACTCTAA
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
26 1 0.02
27 42 0.88
28 5 0.10
ACGTcount: A:0.44, C:0.09, G:0.21, T:0.26
Consensus pattern (27 bp):
GTATGGAAAAATTTGAAAGAATAATAC
Found at i:83064010 original size:27 final size:27
Alignment explanation
Indices: 83063938--83064022 Score: 89
Period size: 27 Copynumber: 3.1 Consensus size: 27
83063928 ACTTTGAACA
* * * *
83063938 AATAATACGTATGGCAAAATTTGAAAG
1 AATAATACGTATGGCGAACTCTGAAGG
* * *
83063965 AATAGTACGTATAGTGAACTCTGAAGG
1 AATAATACGTATGGCGAACTCTGAAGG
* *
83063992 AATAATACGTATGGCGAACTCTAAAGA
1 AATAATACGTATGGCGAACTCTGAAGG
83064019 AATA
1 AATA
83064023 GTTCCATAGA
Statistics
Matches: 46, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (27 bp):
AATAATACGTATGGCGAACTCTGAAGG
Found at i:83067467 original size:64 final size:65
Alignment explanation
Indices: 83067397--83067633 Score: 232
Period size: 64 Copynumber: 3.7 Consensus size: 65
83067387 ATGTTATGCT
* * * * *
83067397 TATTTTGTAATCAGTGAATTACACGACCTGGACACACGTTC-GTGTCCTTAGCCCGTATAATCCG
1 TATTTTGTAATCAGTGAGTTACACGACCTGGACACACGTCCAGTGTCCTTGGCCCGTATGATCCA
* * ** * * **
83067461 TATTTTGTAATCAGTGAGTTACATGGCCTACACACAC-TCCTGTGTCCTTGGCCGGTATGATATA
1 TATTTTGTAATCAGTGAGTTACACGACCTGGACACACGTCCAGTGTCCTTGGCCCGTATGATCCA
* * * *
83067525 TATTTTATAATCAGTGAGTTACAC-AGCCTGGACACATG-CCAGTGTCCTTGGCCCATGTGATCC
1 TATTTTGTAATCAGTGAGTTACACGA-CCTGGACACACGTCCAGTGTCCTTGGCCCGTATGATCC
*
83067588 T
65 A
* * * *
83067589 TATTTTGTAATCAGTCAGTTACATGGCCTGGACACATGTCC-GTGT
1 TATTTTGTAATCAGTGAGTTACACGACCTGGACACACGTCCAGTGT
83067634 GAACCCTGTA
Statistics
Matches: 139, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
63 2 0.01
64 135 0.97
65 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.33
Consensus pattern (65 bp):
TATTTTGTAATCAGTGAGTTACACGACCTGGACACACGTCCAGTGTCCTTGGCCCGTATGATCCA
Found at i:83076040 original size:41 final size:38
Alignment explanation
Indices: 83075996--83076127 Score: 122
Period size: 40 Copynumber: 3.4 Consensus size: 38
83075986 GACTTCAAGT
*
83075996 CGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATT
1 CGATGAGACACTGGGTGTCAA-TTA-TACTTCGGATT-ATC
* * * * * *
83076037 CGATGAGGCACTGAGTGCCGATT-TACTTCGGTTTAGC
1 CGATGAGACACTGGGTGTCAATTATACTTCGGATTATC
* *
83076074 CGATGAGACATTGGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTC-AATTA-TACTTCGGATTATC
*
83076114 CGATGAGGCACTGG
1 CGATGAGACACTGG
83076128 TGCCAAACTA
Statistics
Matches: 71, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 16 0.23
38 13 0.18
40 25 0.35
41 17 0.24
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (38 bp):
CGATGAGACACTGGGTGTCAATTATACTTCGGATTATC
Found at i:83079216 original size:38 final size:38
Alignment explanation
Indices: 83079148--83079273 Score: 153
Period size: 38 Copynumber: 3.3 Consensus size: 38
83079138 ATTACAAATT
* * *
83079148 ATAATGAGATCTAGCATTTGTTGCAAATTCTCGGGTAAC
1 ATAACGAGATCTAGC-CTTGTTGCAAATTCTCGAGTAAC
* *
83079187 ATAACGAGATCTAGCCTTATTGCAGATTCTCGAGTAAC
1 ATAACGAGATCTAGCCTTGTTGCAAATTCTCGAGTAAC
* * * *
83079225 CTAACAAGATCTAGCCTTGTTGCAAATTCTTGAGTAAT
1 ATAACGAGATCTAGCCTTGTTGCAAATTCTCGAGTAAC
*
83079263 ATAATGAGATC
1 ATAACGAGATC
83079274 CAACCTTTTT
Statistics
Matches: 73, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
38 59 0.81
39 14 0.19
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (38 bp):
ATAACGAGATCTAGCCTTGTTGCAAATTCTCGAGTAAC
Found at i:83079300 original size:77 final size:77
Alignment explanation
Indices: 83079154--83079300 Score: 181
Period size: 76 Copynumber: 1.9 Consensus size: 77
83079144 AATTATAATG
* * * * *
83079154 AGATCTAGCATTTGTTGCAAATTCTCGGGTAACATAACGAGATCTAGCCTTATTGCAGATTCTCG
1 AGATCTAGCACTTGTTGCAAATTCTCGAGTAACATAACGAGATCCAACCTTATTGCAGATTCTCA
83079219 AGTAACCTAACA
66 AGTAACCTAACA
* * * *
83079231 AGATCTAGC-CTTGTTGCAAATTCTTGAGTAATATAATGAGATCCAACCTT-TTTCATGGATTCT
1 AGATCTAGCACTTGTTGCAAATTCTCGAGTAACATAACGAGATCCAACCTTATTGCA--GATTCT
83079294 CAAGTAA
64 CAAGTAA
83079301 TATATGACAT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
75 4 0.07
76 34 0.58
77 21 0.36
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (77 bp):
AGATCTAGCACTTGTTGCAAATTCTCGAGTAACATAACGAGATCCAACCTTATTGCAGATTCTCA
AGTAACCTAACA
Found at i:83080694 original size:20 final size:19
Alignment explanation
Indices: 83080665--83080702 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
83080655 ATGTTGAATC
83080665 AAATGAATAGAAATAGATAG
1 AAATGAATAGAAAT-GATAG
*
83080685 AAATGGATAGAAATGATA
1 AAATGAATAGAAATGATA
83080703 AAGTTAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.58, C:0.00, G:0.21, T:0.21
Consensus pattern (19 bp):
AAATGAATAGAAATGATAG
Found at i:83083835 original size:16 final size:16
Alignment explanation
Indices: 83083814--83083844 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
83083804 GAAACAGCAT
*
83083814 ATATCAAATATAGATC
1 ATATCAAATACAGATC
83083830 ATATCAAATACAGAT
1 ATATCAAATACAGAT
83083845 GTAGATTTCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.29
Consensus pattern (16 bp):
ATATCAAATACAGATC
Found at i:83093617 original size:19 final size:20
Alignment explanation
Indices: 83093589--83093627 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
83093579 ATTTACAAAA
* *
83093589 AAATTCTATTTTAA-TCTTT
1 AAATTATATTCTAATTCTTT
83093608 AAATTATATTCTAATTCTTT
1 AAATTATATTCTAATTCTTT
83093628 TTTAAGAGTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (20 bp):
AAATTATATTCTAATTCTTT
Found at i:83094694 original size:22 final size:24
Alignment explanation
Indices: 83094669--83094714 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
83094659 GATGTATTTA
83094669 CATA-TTTAAAT-CTCTTTTTATT
1 CATATTTTAAATACTCTTTTTATT
*
83094691 CATATTTTAAATACTTTTTTTATT
1 CATATTTTAAATACTCTTTTTATT
83094715 ATGATTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 7 0.33
24 10 0.48
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (24 bp):
CATATTTTAAATACTCTTTTTATT
Found at i:83095757 original size:4 final size:4
Alignment explanation
Indices: 83095750--83095870 Score: 101
Period size: 4 Copynumber: 31.8 Consensus size: 4
83095740 TTACCAACAT
* * * * *
83095750 TCTC TCTC CCTC -CT- TCTC CCTC TCCC TCTC TCTC CCTC CCTC -CT-
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
* * * * * *
83095794 TCTC CCTC TCCC TCTC TTTC CCTC CCTC -CT- TCTC CCTC TCTC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
83095840 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCT
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCT
83095871 TTAAAAATTT
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
3 12 0.12
4 84 0.88
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (4 bp):
TCTC
Found at i:83095773 original size:6 final size:6
Alignment explanation
Indices: 83095759--83095869 Score: 68
Period size: 6 Copynumber: 18.5 Consensus size: 6
83095749 TTCTCTCTCC
* *
83095759 CTCCTT CTCCCT CTCCCT CT--CT CTCCCT CCCTCCTT CTCCCT CTCCCT
1 CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT --CTCCCT CTCCCT CTCCCT
* * * * * *
83095807 CT--CT TTCCCT CCCTCCTT CTCCCT CTCTCT CTCTCT CTCTCT CTCTCT
1 CTCCCT CTCCCT --CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT CTCCCT
* *
83095855 CTCTCT CTCTCT CTC
1 CTCCCT CTCCCT CTC
83095870 TTTAAAAATT
Statistics
Matches: 89, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
4 7 0.08
6 73 0.82
8 9 0.10
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (6 bp):
CTCCCT
Found at i:83095790 original size:30 final size:30
Alignment explanation
Indices: 83095750--83095870 Score: 165
Period size: 30 Copynumber: 4.1 Consensus size: 30
83095740 TTACCAACAT
*
83095750 TCTCTCTCCCTCCTTCTCCCTCTCCCTCTC
1 TCTCCCTCCCTCCTTCTCCCTCTCCCTCTC
83095780 TCTCCCTCCCTCCTTCTCCCTCTCCCTCTC
1 TCTCCCTCCCTCCTTCTCCCTCTCCCTCTC
* *
83095810 TTTCCCTCCCTCCTTCTCCCTCTCTCTCTC
1 TCTCCCTCCCTCCTTCTCCCTCTCCCTCTC
* * * *
83095840 TCTCTCTCTCT-C-TCTCTCTCTCTCTCTC
1 TCTCCCTCCCTCCTTCTCCCTCTCCCTCTC
83095868 TCT
1 TCT
83095871 TTAAAAATTT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
28 18 0.21
29 1 0.01
30 65 0.77
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (30 bp):
TCTCCCTCCCTCCTTCTCCCTCTCCCTCTC
Found at i:83095868 original size:10 final size:10
Alignment explanation
Indices: 83095750--83095870 Score: 101
Period size: 10 Copynumber: 12.7 Consensus size: 10
83095740 TTACCAACAT
*
83095750 TCTCTCTCCC
1 TCTCTCTCTC
83095760 TC-CT-TCTC
1 TCTCTCTCTC
* *
83095768 CCTCTCCCTC
1 TCTCTCTCTC
*
83095778 TCTCTCCCTC
1 TCTCTCTCTC
*
83095788 CCTC-CT-TC
1 TCTCTCTCTC
* *
83095796 TCCCTCTCCC
1 TCTCTCTCTC
* *
83095806 TCTCTTTCCC
1 TCTCTCTCTC
*
83095816 TCCCTC-CT-
1 TCTCTCTCTC
*
83095824 TCTCCCTCTC
1 TCTCTCTCTC
83095834 TCTCTCTCTC
1 TCTCTCTCTC
83095844 TCTCTCTCTC
1 TCTCTCTCTC
83095854 TCTCTCTCTC
1 TCTCTCTCTC
83095864 TCTCTCT
1 TCTCTCT
83095871 TTAAAAATTT
Statistics
Matches: 88, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
8 12 0.14
9 10 0.11
10 66 0.75
ACGTcount: A:0.00, C:0.57, G:0.00, T:0.43
Consensus pattern (10 bp):
TCTCTCTCTC
Found at i:83098158 original size:96 final size:96
Alignment explanation
Indices: 83097993--83098171 Score: 229
Period size: 96 Copynumber: 1.9 Consensus size: 96
83097983 TCTGGGCACA
* * *
83097993 TGTCTCAAGACATAGGGCACAAAATCTCGAGACATGGTGTTATTTTCTTGGGACATAAAACATCG
1 TGTCTCAAGACATAGGGCACAAAATCTCGAGACATGGTGTCATTGTCTTGAGACATAAAACATCG
83098058 AAGCTAAAATACCAAAAATTTAGTCCAAACAT
66 AAGCTAAAAT-CCAAAAATTTAGTCCAAACAT
* * * *
83098090 TGTCTCAAGACATATGGG-TC-AAGTCTCGAGACATGGT-TGCATTGTCTTGAGACATGAAACTT
1 TGTCTCAAGACATA-GGGCACAAAATCTCGAGACATGGTGT-CATTGTCTTGAGACATAAAACAT
* *
83098152 CTAAGCTAAAATTCAAAAAT
64 CGAAGCTAAAATCCAAAAAT
83098172 AAGGGAGGCA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
95 8 0.11
96 45 0.63
97 15 0.21
98 3 0.04
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (96 bp):
TGTCTCAAGACATAGGGCACAAAATCTCGAGACATGGTGTCATTGTCTTGAGACATAAAACATCG
AAGCTAAAATCCAAAAATTTAGTCCAAACAT
Found at i:83099766 original size:31 final size:31
Alignment explanation
Indices: 83099731--83099835 Score: 124
Period size: 31 Copynumber: 3.4 Consensus size: 31
83099721 TTATTCACAT
83099731 AATATTAAATTAATAAAATACTATCAAGATA
1 AATATTAAATTAATAAAATACTATCAAGATA
* ** * * *
83099762 AATATTAAATCACATTTAATA-TCTC-ACATT
1 AATATTAAATTA-ATAAAATACTATCAAGATA
83099792 AATATTAAATTAATAAAATACTATCAAGATA
1 AATATTAAATTAATAAAATACTATCAAGATA
*
83099823 AATATTTAATTAA
1 AATATTAAATTAA
83099836 ATTTAATGTT
Statistics
Matches: 58, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
29 6 0.10
30 17 0.29
31 29 0.50
32 6 0.10
ACGTcount: A:0.53, C:0.09, G:0.02, T:0.36
Consensus pattern (31 bp):
AATATTAAATTAATAAAATACTATCAAGATA
Found at i:83099825 original size:61 final size:60
Alignment explanation
Indices: 83099725--83099842 Score: 200
Period size: 61 Copynumber: 1.9 Consensus size: 60
83099715 TTGAAATTAT
*
83099725 TCACATAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCACATTTAATATC
1 TCACATAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCAAATTTAATATC
* *
83099785 TCACATTAATATTAAATTAATAAAATACTATCAAGATAAATATTTAATTAAATTTAAT
1 TCACA-TAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCAAATTTAAT
83099843 GTTAAATTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
60 5 0.09
61 49 0.91
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (60 bp):
TCACATAATATTAAATTAATAAAATACTATCAAGATAAATATTAAATCAAATTTAATATC
Found at i:83101284 original size:21 final size:22
Alignment explanation
Indices: 83101257--83101323 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 22
83101247 AATGGGTGAA
*
83101257 TATTTGGCACTTGTGTGCATTT
1 TATTTGGCACTTGTATGCATTT
*
83101279 TA-TTGGCAATTGTATGCATTT
1 TATTTGGCACTTGTATGCATTT
* * *
83101300 ATATTTGGAACTTTTTTGCATTT
1 -TATTTGGCACTTGTATGCATTT
83101323 T
1 T
83101324 TGAAGGGTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 17 0.46
22 5 0.14
23 15 0.41
ACGTcount: A:0.19, C:0.10, G:0.18, T:0.52
Consensus pattern (22 bp):
TATTTGGCACTTGTATGCATTT
Found at i:83104562 original size:31 final size:31
Alignment explanation
Indices: 83104525--83104667 Score: 198
Period size: 31 Copynumber: 4.6 Consensus size: 31
83104515 TGTATACAAT
83104525 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
*
83104556 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
* *
83104587 GTGAAAAGTGGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGACTACCTGATCA
* * *
83104618 GTGAAAAGTGGTAGC-TCCAGCAACCTGATTA
1 GTGAAAAGTGGTAGCTTCGA-CTACCTGATCA
* *
83104649 GTGAATAGTGATAGCTTCG
1 GTGAAAAGTGGTAGCTTCG
83104668 GCTATCGAAT
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
30 2 0.02
31 98 0.96
32 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGACTACCTGATCA
Found at i:83104599 original size:62 final size:61
Alignment explanation
Indices: 83104525--83104758 Score: 234
Period size: 62 Copynumber: 3.9 Consensus size: 61
83104515 TGTATACAAT
*
83104525 GTGAAAAGTGGTAGCTTCGACTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGAT-AGTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * * *
83104587 GTGAAAAGTGGTAGCTTCGGCTACCTGATTAGTGAAAAGTGGTAGCTCCAGCAACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGA-TAGTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * * *
83104649 GTGAATAGTGATAGCTTCGGCTATC-GA-ATGTGAAAAG-GGATAGCTTCGGCTATC-GA--A
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATA-GTGAAAAGTGG-TAGCTTCGGCTACCTGATCA
* **
83104706 TGTGAAAAG-GGATAGCTTCGGCTATCAAAT-GTGAAAAG-GGATAGCTTCGGCTA
1 -GTGAAAAGTGG-TAGCTTCGGCTACCTGATAGTGAAAAGTGG-TAGCTTCGGCTA
83104759 TCAAATTTGG
Statistics
Matches: 150, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
57 2 0.01
58 44 0.29
59 6 0.04
60 18 0.12
61 2 0.01
62 77 0.51
63 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (61 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATAGTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:83104690 original size:29 final size:29
Alignment explanation
Indices: 83104649--83104760 Score: 197
Period size: 29 Copynumber: 3.9 Consensus size: 29
83104639 AACCTGATTA
* *
83104649 GTGAATAGTGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCGAAT
83104678 GTGAAAAGGGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCGAAT
*
83104707 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCGAAT
83104736 GTGAAAAGGGATAGCTTCGGCTATC
1 GTGAAAAGGGATAGCTTCGGCTATC
83104761 AAATTTGGAA
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 80 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.26
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCGAAT
Found at i:83104761 original size:29 final size:29
Alignment explanation
Indices: 83104649--83104773 Score: 196
Period size: 29 Copynumber: 4.3 Consensus size: 29
83104639 AACCTGATTA
* * *
83104649 GTGAATAGTGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
*
83104678 GTGAAAAGGGATAGCTTCGGCTATCGAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
83104707 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
83104736 GTGAAAAGGGATAGCTTCGGCTATCAAAT
1 GTGAAAAGGGATAGCTTCGGCTATCAAAT
* *
83104765 TTGGAAAGG
1 GTGAAAAGG
83104774 AAAGGTATAC
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 91 1.00
ACGTcount: A:0.32, C:0.13, G:0.30, T:0.26
Consensus pattern (29 bp):
GTGAAAAGGGATAGCTTCGGCTATCAAAT
Done.