Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 267 of 325
Found at i:83104800 original size:33 final size:33
Alignment explanation
Indices: 83104763--83104994 Score: 356
Period size: 33 Copynumber: 7.0 Consensus size: 33
83104753 CGGCTATCAA
* *
83104763 ATTTGGAAAGGAAAGGTATACTTTGTGTATACT
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* **
83104796 ATTTGAAAATGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
*
83104829 ATTTGAAAAGGAAATGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
83104862 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
**
83104895 ATTTGAAAAGGTTAGGTATACTTTGTGTATACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
83104928 ATATGAAAAGGAAAGGTATACTTTGTGTATATC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
* *
83104961 ATATGAAAAGGAAAGGTATACTTTGTGTGTACC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
83104994 A
1 A
83104995 CTCGGAAAGA
Statistics
Matches: 181, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 181 1.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (33 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:83104882 original size:99 final size:99
Alignment explanation
Indices: 83104763--83104994 Score: 392
Period size: 99 Copynumber: 2.3 Consensus size: 99
83104753 CGGCTATCAA
* * *
83104763 ATTTGGAAAGGAAAGGTATACTTTGTGTATACTATTTGAAAATGTTAGGTATACTTTGTGTATAC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC
* *
83104828 CATTTGAAAAGGAAATGTATACTTTGTGTATACC
66 CATATGAAAAGGAAAGGTATACTTTGTGTATACC
83104862 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC
*
83104927 CATATGAAAAGGAAAGGTATACTTTGTGTATATC
66 CATATGAAAAGGAAAGGTATACTTTGTGTATACC
* *
83104961 ATATGAAAAGGAAAGGTATACTTTGTGTGTACCA
1 ATTTGAAAAGGAAAGGTATACTTTGTGTATACCA
83104995 CTCGGAAAGA
Statistics
Matches: 125, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 125 1.00
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.36
Consensus pattern (99 bp):
ATTTGAAAAGGAAAGGTATACTTTGTGTATACCATTTGAAAAGGTTAGGTATACTTTGTGTATAC
CATATGAAAAGGAAAGGTATACTTTGTGTATACC
Found at i:83115890 original size:27 final size:32
Alignment explanation
Indices: 83115833--83115895 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 32
83115823 TTTATCACTG
83115833 AATTTTCAATTATCTTTTGTTCAAATATTTAT
1 AATTTTCAATTATCTTTTGTTCAAATATTTAT
*
83115865 AATTTT-AATT-T-TTTT-TTCAAA-GTTTAT
1 AATTTTCAATTATCTTTTGTTCAAATATTTAT
83115892 AATT
1 AATT
83115896 GGATTTGCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 9 0.30
28 6 0.20
29 4 0.13
30 1 0.03
31 4 0.13
32 6 0.20
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (32 bp):
AATTTTCAATTATCTTTTGTTCAAATATTTAT
Found at i:83130761 original size:21 final size:21
Alignment explanation
Indices: 83130737--83130838 Score: 114
Period size: 21 Copynumber: 4.9 Consensus size: 21
83130727 AAAAACCCTA
*
83130737 TTATACCATATGCGAACCATG
1 TTATACTATATGCGAACCATG
* * *
83130758 TTATATTATATGCGAAACTTG
1 TTATACTATATGCGAACCATG
* * * *
83130779 TTATACTATATGAGATCCTTA
1 TTATACTATATGCGAACCATG
83130800 TTATACTATATGCGAACCATG
1 TTATACTATATGCGAACCATG
* *
83130821 TTATACTATGTGCAAACC
1 TTATACTATATGCGAACC
83130839 CATGCTATTA
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 66 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (21 bp):
TTATACTATATGCGAACCATG
Found at i:83131012 original size:17 final size:17
Alignment explanation
Indices: 83130992--83131029 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
83130982 CGAGCTCTGC
83130992 TATATTGCGAGCCCTAT
1 TATATTGCGAGCCCTAT
*
83131009 TATATTGTGAGCCCTAT
1 TATATTGCGAGCCCTAT
83131026 TATA
1 TATA
83131030 CTATGAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.39
Consensus pattern (17 bp):
TATATTGCGAGCCCTAT
Found at i:83131870 original size:22 final size:22
Alignment explanation
Indices: 83131844--83131888 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
83131834 ATGAGAAATG
*
83131844 GGTTGTGATATGT-TACATTGAT
1 GGTTGCGATATGTCTA-ATTGAT
*
83131866 GGTTGCGATCTGTCTAATTGAT
1 GGTTGCGATATGTCTAATTGAT
83131888 G
1 G
83131889 TATGAATGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.20, C:0.09, G:0.29, T:0.42
Consensus pattern (22 bp):
GGTTGCGATATGTCTAATTGAT
Found at i:83132252 original size:27 final size:27
Alignment explanation
Indices: 83132194--83132259 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
83132184 AATAAGAGAT
** *
83132194 CGTAGGGTAAATTGTGAACTAGCGATT
1 CGTAGGGTAGGTTGTGAACTAGCGATC
*
83132221 TGTAGGGTAGGTTGTGAACTAG-GTATC
1 CGTAGGGTAGGTTGTGAACTAGCG-ATC
*
83132248 CGTAGGGCAGGT
1 CGTAGGGTAGGT
83132260 CGCGAGCTAG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.24, C:0.11, G:0.36, T:0.29
Consensus pattern (27 bp):
CGTAGGGTAGGTTGTGAACTAGCGATC
Found at i:83132990 original size:12 final size:12
Alignment explanation
Indices: 83132958--83132991 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
83132948 GTGGTAGTGG
**
83132958 TGATGATGACGA
1 TGATGATGGTGA
83132970 TGATGATGGTGA
1 TGATGATGGTGA
83132982 TGATGATGGT
1 TGATGATGGT
83132992 TCTAAAATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.03, G:0.38, T:0.32
Consensus pattern (12 bp):
TGATGATGGTGA
Found at i:83136112 original size:31 final size:31
Alignment explanation
Indices: 83136050--83136112 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
83136040 ATAGGCCCAA
* * *
83136050 AATTTGGCAATTATTTTCACATTAGGGTTTG
1 AATTTGACAATTATTCTCACATTAGGATTTG
*
83136081 AATTTGACAATTATTCTCATATT-GAGATTTG
1 AATTTGACAATTATTCTCACATTAG-GATTTG
83136112 A
1 A
83136113 TTTTTAGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (31 bp):
AATTTGACAATTATTCTCACATTAGGATTTG
Found at i:83137371 original size:35 final size:37
Alignment explanation
Indices: 83137316--83137404 Score: 137
Period size: 35 Copynumber: 2.4 Consensus size: 37
83137306 TCATATCTTG
*
83137316 TAAGATTGTATATCATATCTAAGATTGCA-ATCATATC
1 TAAGATTG-ATATCATATCTAAGATTGCATATCACATC
83137353 TAAGATTG-TATCATATCTAAGATTGCATATCACATC
1 TAAGATTGATATCATATCTAAGATTGCATATCACATC
83137389 TAAGATTGCATATCAT
1 TAAGATTG-ATATCAT
83137405 TGAAGATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
36 15 0.31
37 8 0.17
38 6 0.12
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCACATC
Found at i:83137383 original size:14 final size:15
Alignment explanation
Indices: 83137328--83137383 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
83137318 AGATTGTATA
83137328 TCATATCTAAGATTG
1 TCATATCTAAGATTG
83137343 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
83137361 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
83137378 -CATATC
1 TCATATC
83137384 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:83137412 original size:17 final size:19
Alignment explanation
Indices: 83137316--83137404 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
83137306 TCATATCTTG
*
83137316 TAAGATTGTATATCATATC
1 TAAGATTGCATATCATATC
83137335 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
83137353 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
83137370 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
83137389 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
83137405 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:83138254 original size:207 final size:207
Alignment explanation
Indices: 83137797--83138713 Score: 1489
Period size: 207 Copynumber: 4.4 Consensus size: 207
83137787 CTGCTTTTCA
* * * * *
83137797 ATTTGTTCCCTGGCAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGCGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
* ** * *
83137862 AACCAAATCAGCTATGTCTTCGATTTCCTCCTTGTAAGCACAAGGATACCAAACCATCTTGGGTC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* * ** * *
83137927 -TGCTTCAGT-CAATCATCTGAAGGTTAGATCTGCTATATGTCTGTCCTCCGTCGAATATAGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATATGGAGA
83137990 CGCCAAACTTCG
196 CGCCAAACTTCG
83138002 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
83138067 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* * *
83138132 TTGCTTCAGTGTAAACATCTGAAGGCCAGATCTGCTATGTGTCTGCCCTTCGTCGAATATGGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATATGGAGA
83138197 CGCCAAACTTCG
196 CGCCAAACTTCG
* *
83138209 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTGGACTTGCTTCAACGTAAATACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
* *
83138274 AGCCAAATCAGCTATGTCTTTGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* *
83138339 TTGCTTCAGTATAAACATCCGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATAGGGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATATGGAGA
*
83138404 CACCAAACTTCG
196 CGCCAAACTTCG
*
83138416 ATTTGTTCTCTGACAATACAGAGATGCCAAATTATCTTAGACTTGCTTCAACGTAAACACGTGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
83138481 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
66 AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
* * * *
83138546 TTGCTTCAGTATAAACATCTAAAAGCCAGATCTACTATGTGTCTGCCCTCCGTCGAATATGGAGA
131 TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATATGGAGA
83138611 CGCCAAACTTCG
196 CGCCAAACTTCG
* ** * *
83138623 ATTTGTTCTCTGACAATACAGAGATGCC-AATCATCTTAGATTTGCTTCATTGTAAGCACATGAA
1 ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
83138687 AGCCAAATCAGCTATGTCTTCGATTTG
66 AGCCAAATCAGCTATGTCTTCGATTTG
83138714 CTCTTCGTCG
Statistics
Matches: 664, Mismatches: 46, Indels: 3
0.93 0.06 0.00
Matches are distributed among these distances:
205 120 0.18
206 66 0.10
207 478 0.72
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (207 bp):
ATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGTAAACACGTGAA
AGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTTGGATC
TTGCTTCAGTATAAACATCTGAAGGCCAGATCTGCTATATGTCTGCCCTCCGTCGAATATGGAGA
CGCCAAACTTCG
Found at i:83139898 original size:1 final size:1
Alignment explanation
Indices: 83139887--83139951 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
83139877 GGCCTCTCCA
* * * * * * **
83139887 TTTTTTCTTTTTTCTCTTTTTTCTTTTTCTTTTTTTTCTTTTTTTTTTTTTTTGCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
83139952 AAATAGAAGT
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.88
Consensus pattern (1 bp):
T
Found at i:83139904 original size:9 final size:8
Alignment explanation
Indices: 83139887--83139948 Score: 74
Period size: 8 Copynumber: 7.8 Consensus size: 8
83139877 GGCCTCTCCA
83139887 TTTTTTC-
1 TTTTTTCT
83139894 TTTTTTCT
1 TTTTTTCT
83139902 CTTTTTTCT
1 -TTTTTTCT
*
83139911 TTTTCT-T
1 TTTTTTCT
83139918 TTTTTTCT
1 TTTTTTCT
*
83139926 TTTTTTTT
1 TTTTTTCT
83139934 TTTTTTGCT
1 TTTTTT-CT
83139943 TTTTTT
1 TTTTTT
83139949 TTTAAATAGA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
7 13 0.28
8 19 0.40
9 15 0.32
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.87
Consensus pattern (8 bp):
TTTTTTCT
Found at i:83139908 original size:16 final size:16
Alignment explanation
Indices: 83139887--83139951 Score: 89
Period size: 16 Copynumber: 4.1 Consensus size: 16
83139877 GGCCTCTCCA
*
83139887 TTTTTTCTTTTTTCTC
1 TTTTTTCTTTTTTCTT
83139903 TTTTTTC-TTTTTCTT
1 TTTTTTCTTTTTTCTT
*
83139918 TTTTTTCTTTTTTTTT
1 TTTTTTCTTTTTTCTT
83139934 TTTTTTGCTTTTTT-TT
1 TTTTTT-CTTTTTTCTT
83139950 TT
1 TT
83139952 AAATAGAAGT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
15 14 0.31
16 24 0.53
17 7 0.16
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.88
Consensus pattern (16 bp):
TTTTTTCTTTTTTCTT
Found at i:83139913 original size:15 final size:15
Alignment explanation
Indices: 83139887--83139929 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
83139877 GGCCTCTCCA
83139887 TTTTTTCTTTTTTCTC
1 TTTTTTC-TTTTTCTC
*
83139903 TTTTTTCTTTTTCTT
1 TTTTTTCTTTTTCTC
83139918 TTTTTTCTTTTT
1 TTTTTTCTTTTT
83139930 TTTTTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (15 bp):
TTTTTTCTTTTTCTC
Found at i:83139913 original size:22 final size:21
Alignment explanation
Indices: 83139887--83139951 Score: 82
Period size: 19 Copynumber: 3.2 Consensus size: 21
83139877 GGCCTCTCCA
83139887 TTTTTTCTTTTTTCTCTTTTT
1 TTTTTTCTTTTTTCTCTTTTT
*
83139908 TCTTTTTCTTTTTTTTC-TTTT
1 T-TTTTTCTTTTTTCTCTTTTT
*
83139929 TTTTTT-TTTTTGCT-TTTTT
1 TTTTTTCTTTTTTCTCTTTTT
83139948 TTTT
1 TTTT
83139952 AAATAGAAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
19 14 0.36
20 5 0.13
21 6 0.15
22 14 0.36
ACGTcount: A:0.00, C:0.11, G:0.02, T:0.88
Consensus pattern (21 bp):
TTTTTTCTTTTTTCTCTTTTT
Found at i:83145751 original size:35 final size:37
Alignment explanation
Indices: 83145686--83145764 Score: 112
Period size: 35 Copynumber: 2.2 Consensus size: 37
83145676 ATTACAAAAT
*
83145686 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCACATCTAAGATTG
83145722 CA-ATCATATCTAAGATTG-TATCACATCTAAGATTG
1 CATATCATATCTAAGATTGATATCACATCTAAGATTG
83145757 CATATCAT
1 CATATCAT
83145765 TGAAGATTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
35 21 0.54
36 8 0.21
37 10 0.26
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCACATCTAAGATTG
Found at i:83146588 original size:19 final size:19
Alignment explanation
Indices: 83146551--83146588 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
83146541 CTTTAGGGCT
*
83146551 TTTTTTTAATTGATTCAAA
1 TTTTTTTAATTAATTCAAA
83146570 TTTTTTT-ATTAATTACAAA
1 TTTTTTTAATTAATT-CAAA
83146589 AATATTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTTTTAATTAATTCAAA
Found at i:83147175 original size:7 final size:7
Alignment explanation
Indices: 83147163--83147215 Score: 90
Period size: 7 Copynumber: 7.7 Consensus size: 7
83147153 ACTAGAAAAG
83147163 AAAAGGA
1 AAAAGGA
83147170 AAAAGGA
1 AAAAGGA
83147177 AAAAGGA
1 AAAAGGA
*
83147184 AAATGGA
1 AAAAGGA
83147191 AAAAGGA
1 AAAAGGA
83147198 AAAAGGA
1 AAAAGGA
83147205 AAAA-GA
1 AAAAGGA
83147211 AAAAG
1 AAAAG
83147216 AAAGAGAAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
6 6 0.14
7 37 0.86
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (7 bp):
AAAAGGA
Found at i:83150341 original size:26 final size:26
Alignment explanation
Indices: 83150312--83150395 Score: 84
Period size: 24 Copynumber: 3.3 Consensus size: 26
83150302 AATTTCATAA
*
83150312 TTACAATATAATATGACTTATCAAAT
1 TTACAATATAATATAACTTATCAAAT
* *
83150338 TTACAA-A-AATATATAATT-TCAAAA
1 TTACAATATAATATA-ACTTATCAAAT
**
83150362 TTACAAATATGGTATAACTTATCAAAT
1 TTAC-AATATAATATAACTTATCAAAT
83150389 TTACAAT
1 TTACAAT
83150396 TATCAAAACT
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
24 14 0.30
25 6 0.13
26 13 0.28
27 13 0.28
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (26 bp):
TTACAATATAATATAACTTATCAAAT
Found at i:83150364 original size:50 final size:51
Alignment explanation
Indices: 83150290--83150394 Score: 149
Period size: 51 Copynumber: 2.1 Consensus size: 51
83150280 AATTTCTTCA
* * *
83150290 ACAAATATATACAATTTCATAATTAC-AATATAATATGACTTATCAAATTT
1 ACAAAAATATACAATTTCAAAATTACAAATATAATATAACTTATCAAATTT
* **
83150340 ACAAAAATATATAATTTCAAAATTACAAATATGGTATAACTTATCAAATTT
1 ACAAAAATATACAATTTCAAAATTACAAATATAATATAACTTATCAAATTT
83150391 ACAA
1 ACAA
83150395 TTATCAAAAC
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 23 0.48
51 25 0.52
ACGTcount: A:0.50, C:0.11, G:0.03, T:0.35
Consensus pattern (51 bp):
ACAAAAATATACAATTTCAAAATTACAAATATAATATAACTTATCAAATTT
Found at i:83152800 original size:23 final size:23
Alignment explanation
Indices: 83152769--83152812 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
83152759 AAGAAAGAAA
*
83152769 GAAGAAAGGAATAAAAAAGGTGG
1 GAAGAAAGGAAAAAAAAAGGTGG
*
83152792 GAAGGAAGGAAAAAAAAAGGT
1 GAAGAAAGGAAAAAAAAAGGT
83152813 TGACGTGTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.59, C:0.00, G:0.34, T:0.07
Consensus pattern (23 bp):
GAAGAAAGGAAAAAAAAAGGTGG
Found at i:83156640 original size:127 final size:125
Alignment explanation
Indices: 83156438--83156783 Score: 410
Period size: 126 Copynumber: 2.7 Consensus size: 125
83156428 GCCGATTTTA
* * * *
83156438 TAAAACAAAGGTGATGTTTGATGCTTGGAAATTCGGGAAGTCGTGCCC-AACGTGCTGGGTTTCG
1 TAAAA-AAAGGCGATGTTT-ATGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCG
* *
83156502 ATCTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCTAAA-TGT
64 ATTTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACT-T
*
83156564 TAAAAGAAAGGCGATGTTTACTGTTTGAAAATTCGGGAAATCGGGCCCTAACGTGCTGGGTTTCG
1 TAAAA-AAAGGCGATGTTTA-TGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCG
* *
83156629 ATTTTCTGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCTACGTTTTCAAAACTT
64 ATTTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACTT
* * * * * ** ** *
83156691 CAAAACAAGGCAATGTTCTATGTTTGTAAATCCTAGAAATCGTGCCCTAACGTATTGGATTTCGA
1 TAAAAAAAGGCGATGTT-TATGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCGA
* * *
83156756 TTTTTCGTTGGACC-AATAAATCAAATAT
65 TTTTCCGTTTGTCCAAAT-AATCAAATAT
83156784 TCTTTTTGAA
Statistics
Matches: 190, Mismatches: 25, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
125 4 0.02
126 107 0.56
127 78 0.41
128 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (125 bp):
TAAAAAAAGGCGATGTTTATGTTTGAAAATTCGGGAAATCGTGCCCTAACGTGCTGGGTTTCGAT
TTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCAAAACTT
Found at i:83156797 original size:127 final size:127
Alignment explanation
Indices: 83156478--83156783 Score: 381
Period size: 127 Copynumber: 2.4 Consensus size: 127
83156468 ATTCGGGAAG
* *
83156478 TCGTGCCC-AACGTGCTGGGTTTCGATCTTCCGTTTGTCCAAATAATCAAATATCCCTTTAAAAT
1 TCGTGCCCTAACGTGCTGGGTTTCGATTTTTCGTTTGTCCAAATAATCAAATATCCCTTTAAAAT
* * * * *
83156542 TTCGTCCACGTTTTCTAAATGTTAAAAGAAAGGCGATGTTTACTGTTTGAAAATTCGGGAAA
66 TTCGTCCACGTTTTCAAAATGTCAAAAGAAAGGCAATGTTTACTGTTTGAAAATCCGAGAAA
*
83156604 TCGGGCCCTAACGTGCTGGGTTTCGA-TTTTCTGTTTGTCCAAATAATCAAATATCCCTTTAAAA
1 TCGTGCCCTAACGTGCTGGGTTTCGATTTTTC-GTTTGTCCAAATAATCAAATATCCCTTTAAAA
* * * *
83156668 TTTCGTCTACGTTTTCAAAACT-TCAAAA-CAAGGCAATGTTCTA-TGTTTGTAAATCCTAGAAA
65 TTTCGTCCACGTTTTCAAAA-TGTCAAAAGAAAGGCAATGTT-TACTGTTTGAAAATCCGAGAAA
** * * *
83156730 TCGTGCCCTAACGTATTGGATTTCGATTTTTCGTTGGACC-AATAAATCAAATAT
1 TCGTGCCCTAACGTGCTGGGTTTCGATTTTTCGTTTGTCCAAAT-AATCAAATAT
83156784 TCTTTTTGAA
Statistics
Matches: 156, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
125 3 0.02
126 73 0.47
127 79 0.51
128 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (127 bp):
TCGTGCCCTAACGTGCTGGGTTTCGATTTTTCGTTTGTCCAAATAATCAAATATCCCTTTAAAAT
TTCGTCCACGTTTTCAAAATGTCAAAAGAAAGGCAATGTTTACTGTTTGAAAATCCGAGAAA
Found at i:83169680 original size:23 final size:23
Alignment explanation
Indices: 83169654--83169725 Score: 78
Period size: 22 Copynumber: 3.2 Consensus size: 23
83169644 ATTTAAAAGT
*
83169654 TAAAG-GAAAAATAAAAATGAAAA
1 TAAAGAGAAAAAT-AAAATAAAAA
*
83169677 TAAAGATAAAAATAAAATAAAAA
1 TAAAGAGAAAAATAAAATAAAAA
*
83169700 TAAA-A-ATAAAATAAAATAAAAT
1 TAAAGAGA-AAAATAAAATAAAAA
83169722 TAAA
1 TAAA
83169726 CATCATCTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
21 1 0.02
22 19 0.43
23 18 0.41
24 6 0.14
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (23 bp):
TAAAGAGAAAAATAAAATAAAAA
Found at i:83169681 original size:29 final size:29
Alignment explanation
Indices: 83169661--83169721 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
83169651 AGTTAAAGGA
*
83169661 AAAATAAAAATGAAAATAAAGATAAAAAT
1 AAAATAAAAATAAAAATAAAGATAAAAAT
83169690 AAAATAAAAATAAAAATAAA-AT-AAAAT
1 AAAATAAAAATAAAAATAAAGATAAAAAT
83169717 AAAAT
1 AAAAT
83169722 TAAACATCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 10 0.32
28 2 0.06
29 19 0.61
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (29 bp):
AAAATAAAAATAAAAATAAAGATAAAAAT
Found at i:83169693 original size:17 final size:16
Alignment explanation
Indices: 83169661--83169725 Score: 94
Period size: 17 Copynumber: 3.9 Consensus size: 16
83169651 AGTTAAAGGA
83169661 AAAATAAAAATGAAAAT
1 AAAATAAAAAT-AAAAT
83169678 AAAGATAAAAATAAAAT
1 AAA-ATAAAAATAAAAT
83169695 AAAAATAAAAATAAAAT
1 -AAAATAAAAATAAAAT
*
83169712 AAAATAAAATTAAA
1 AAAATAAAAATAAA
83169726 CATCATCTTC
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
16 13 0.29
17 21 0.47
18 11 0.24
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.18
Consensus pattern (16 bp):
AAAATAAAAATAAAAT
Found at i:83169695 original size:5 final size:6
Alignment explanation
Indices: 83169660--83169725 Score: 84
Period size: 6 Copynumber: 11.5 Consensus size: 6
83169650 AAGTTAAAGG
* *
83169660 AAAAAT AAAAAT GAAAAT AAAGAT AAAAAT -AAAAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
83169707 -AAAAT -AAAAT AAAATT AAA
1 AAAAAT AAAAAT AAAAAT AAA
83169726 CATCATCTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
5 15 0.28
6 38 0.72
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:83171109 original size:23 final size:23
Alignment explanation
Indices: 83171063--83171109 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
83171053 TCGTGACATT
* *
83171063 AGCATGGTAATAGCATGGGAATG
1 AGCATAGTAATAGCATAGGAATG
* *
83171086 AGCATAGTAATGGCATAGGTATG
1 AGCATAGTAATAGCATAGGAATG
83171109 A
1 A
83171110 AAATAGAACG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.09, G:0.32, T:0.23
Consensus pattern (23 bp):
AGCATAGTAATAGCATAGGAATG
Found at i:83176337 original size:44 final size:45
Alignment explanation
Indices: 83176258--83176382 Score: 139
Period size: 45 Copynumber: 2.8 Consensus size: 45
83176248 AATTCAAAAC
* **
83176258 CTTATCTCCCTGAAGTTGCAGTGGAGA-AGGTTGAAG-T-GACAGGT
1 CTTATCTCCCTGAAGTTGCAGTGGA-ACAGATTGAAGATAG-CAAAT
* * *
83176302 CTTATCTCCCTAAAGTTGCAGTGGACCAGACTGAAGATAGCAAAT
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAAAT
* *
83176347 CTTATTTCCCTGAAGTTGCGGTGGAACAGATTGAAG
1 CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG
83176383 CTATAAATAA
Statistics
Matches: 67, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
44 31 0.46
45 35 0.52
46 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGATAGCAAAT
Found at i:83179552 original size:34 final size:34
Alignment explanation
Indices: 83179509--83179578 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
83179499 ATATAATAAA
83179509 GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
1 GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
* *
83179543 GGTTATATTAATTTTTAAAGTGGCGTAATTAAGG
1 GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
83179577 GG
1 GG
83179579 GGAAAAAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (34 bp):
GGTTATATTAATTTTTAAAGCGGCGCAATTAAGG
Found at i:83181183 original size:127 final size:126
Alignment explanation
Indices: 83180974--83181279 Score: 406
Period size: 126 Copynumber: 2.4 Consensus size: 126
83180964 GTCGATTTTA
* * * * *
83180974 TAAAACAAAGGTGATGTTTGATGCTTGGAAATTCGGGAAGTCGTGCCC-AACGTGCTGGGTTTCG
1 TAAAACAAAGGCGATGTTT-ATGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCG
* *
83181038 ATCTTTCGTTTGTCCAAATAATCAAATATCCCTTTAAAATTTCGTCCACGTTTTCTA-AACTT
65 ATCTTTCATTTGTCCAAATAATCAAATATCCCTTTAAAATTTAGTCCACGTTTTC-AGAACTT
83181100 TAAAACAAAGGCGATGTTTATTGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCG
1 TAAAACAAAGGCGATGTTTA-TGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCG
*
83181165 AT-TTTCTATTTGTCCAAATAATCAAATATCCCTTTAAAATTTAGTCTACGTTTTCAGAACTT
65 ATCTTTC-ATTTGTCCAAATAATCAAATATCCCTTTAAAATTTAGTCCACGTTTTCAGAACTT
* * * * *
83181227 CAAAAC-AATGCAATGTTCTATGTTTGTAAATAT-GAGAAATCATGCCCTAACGT
1 TAAAACAAAGGCGATGTT-TATGTTTGAAAAT-TCGGGAAATCATGCCCTAACGT
83181280 ATTGAATTTC
Statistics
Matches: 161, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
125 1 0.01
126 84 0.52
127 76 0.47
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (126 bp):
TAAAACAAAGGCGATGTTTATGTTTGAAAATTCGGGAAATCATGCCCTAACGTGCTGGGTTTCGA
TCTTTCATTTGTCCAAATAATCAAATATCCCTTTAAAATTTAGTCCACGTTTTCAGAACTT
Found at i:83191673 original size:22 final size:22
Alignment explanation
Indices: 83191643--83191689 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
83191633 TATCAAATGT
*
83191643 TATGGATAAAGTATACATATAA
1 TATGAATAAAGTATACATATAA
83191665 TATGAATAAAGTATACATATAA
1 TATGAATAAAGTATACATATAA
83191687 TAT
1 TAT
83191690 TTAATCAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (22 bp):
TATGAATAAAGTATACATATAA
Found at i:83193652 original size:29 final size:29
Alignment explanation
Indices: 83193611--83193673 Score: 119
Period size: 29 Copynumber: 2.2 Consensus size: 29
83193601 TATGGCCTAT
83193611 TAAG-TAATGAAGAGGCTGAGGAGGATGC
1 TAAGTTAATGAAGAGGCTGAGGAGGATGC
83193639 TAAGTTAATGAAGAGGCTGAGGAGGATGC
1 TAAGTTAATGAAGAGGCTGAGGAGGATGC
83193668 TAAGTT
1 TAAGTT
83193674 TGATTAATGC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 4 0.12
29 30 0.88
ACGTcount: A:0.35, C:0.06, G:0.37, T:0.22
Consensus pattern (29 bp):
TAAGTTAATGAAGAGGCTGAGGAGGATGC
Found at i:83196621 original size:104 final size:104
Alignment explanation
Indices: 83196453--83196735 Score: 334
Period size: 104 Copynumber: 2.7 Consensus size: 104
83196443 CTATGTTCTG
* * * *
83196453 AACTGATGATTAAAGGTTAGCAGAGTTAAGCTCGTAACCTCCAATTATTTGAGTTAGCTGAGTTA
1 AACTGATGATTAAAGGTTAGCTGAGTTAAGCTTGAAACCTCAAATTATTTGAGTTAGCTGAGTTA
* * * *
83196518 AGCTCGTAACTCTGAAACAACTTGCAGACCTACGCTCCT
66 AGCTCGCAACTCTGAAACAACTCGCAGACCTACACTCCC
** *
83196557 AGTTGATGATTAAAGGTTAGCTGAGTTAAGCTTGAAACCTCAAATTATTTGAGTTAGCCGAGTTA
1 AACTGATGATTAAAGGTTAGCTGAGTTAAGCTTGAAACCTCAAATTATTTGAGTTAGCTGAGTTA
* * * *
83196622 AGCTTGCAACTCTGAAACATCTCGCGGACCTACATTCCC
66 AGCTCGCAACTCTGAAACAACTCGCAGACCTACACTCCC
* * * * * * * *
83196661 AACTAATGATTAAAGGTTAGTTGAATTAAGC-TCATAACTTCTAGTTATTTGAGTTAGCTAAGTT
1 AACTGATGATTAAAGGTTAGCTGAGTTAAGCTTGA-AACCTCAAATTATTTGAGTTAGCTGAGTT
*
83196725 AAGCTCACAAC
65 AAGCTCGCAAC
83196736 CTAAGTTCTT
Statistics
Matches: 150, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
103 2 0.01
104 148 0.99
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (104 bp):
AACTGATGATTAAAGGTTAGCTGAGTTAAGCTTGAAACCTCAAATTATTTGAGTTAGCTGAGTTA
AGCTCGCAACTCTGAAACAACTCGCAGACCTACACTCCC
Found at i:83196727 original size:37 final size:37
Alignment explanation
Indices: 83196686--83196756 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
83196676 GTTAGTTGAA
*
83196686 TTAAGCTCATAACTTCT-AGTT-ATTTGAGTTAGCTAAG
1 TTAAGCTCACAAC--CTAAGTTCATTTGAGTTAGCTAAG
*
83196723 TTAAGCTCACAACCTAAGTTCTTTTGAGTTAGCT
1 TTAAGCTCACAACCTAAGTTCATTTGAGTTAGCT
83196757 GATTTAGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 2 0.07
36 4 0.13
37 24 0.80
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (37 bp):
TTAAGCTCACAACCTAAGTTCATTTGAGTTAGCTAAG
Found at i:83205053 original size:18 final size:20
Alignment explanation
Indices: 83205021--83205061 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
83205011 TATTAAATCT
*
83205021 TTTAGAACAATTTTAA-ACA
1 TTTAGAACAACTTTAATACA
83205040 TTTA-AACAACTTTAATACA
1 TTTAGAACAACTTTAATACA
83205059 TTT
1 TTT
83205062 TTAAAGTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.41
Consensus pattern (20 bp):
TTTAGAACAACTTTAATACA
Found at i:83205565 original size:15 final size:15
Alignment explanation
Indices: 83205545--83205574 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
83205535 CTTAATCCTT
*
83205545 TACAAATTATAAAAA
1 TACAAACTATAAAAA
83205560 TACAAACTATAAAAA
1 TACAAACTATAAAAA
83205575 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (15 bp):
TACAAACTATAAAAA
Found at i:83206328 original size:369 final size:370
Alignment explanation
Indices: 83205628--83206403 Score: 1193
Period size: 369 Copynumber: 2.1 Consensus size: 370
83205618 GCCTCTGCTT
* * *
83205628 ACCAAAGATACTTCTTTTCTAAAACATTTTCAAAGTTTTAATACAGTTTTAAAATCATTTAATAA
1 ACCAAAGACACTTCATTTCTAAAACATTTTCAAAGCTTTAATACAGTTTTAAAATCATTTAATAA
83205693 AAATATCATAAAAACAAATTCCAACATTTTTCTAGGCTCAAAGACATTTTAAAACTCATATCAAA
66 AAATATCATAAAAACAAATTCCAACATTTTTCTAGGCTCAAAGACATTTTAAAACTCATATCAAA
83205758 TCACCCCCTAAGTGTTCGGATATGACAATTACATAAAATGGACTTCCAATAAATTAAAATGCAAT
131 TCACCCCCTAAGTGTTCGGATATGACAATTACATAAAATGGACTTCCAATAAATTAAAATGCAAT
* * * * **
83205823 TAACACACTTTTACATATATTGAAGCAATCCTGATGCAATTTAGGTGGCTATTCCCCCCTCCCGT
196 CAACACAATTTTACATATATTAAAGCAATCCTGATGCAATTTAGGTGGCTAATCCCCCCTCCCCC
* * * * *
83205888 TCAAATGACGGTTTGACAAAAGCACATCTCTTAAGACAATTTGTCCTCCATCTAGATAGCTAAAT
261 TCAAATAACAGTTTGACAAAAACACATCTCTTAAGACAATTTGTCCTCCATATAGATAGCTAAAC
* * * *
83205953 TCTGCCATCTAGATGACCTTGCAACTACTAGCCCAAACAACACTA
326 TCTGCCATCTAAATGACCCTACAACTACCAGCCCAAACAACACTA
*
83205998 ACCAAAGACACTTCATTTCTAAAACATTTTCAAAGCTTTAATACATTTTTAAAATCATTTAATAA
1 ACCAAAGACACTTCATTTCTAAAACATTTTCAAAGCTTTAATACAGTTTTAAAATCATTTAATAA
83206063 AAATATCATAAAAA-AAATTCCAACATTTTT-TATGGCTCAAAGACATTTTAAAAAC-CATATCA
66 AAATATCATAAAAACAAATTCCAACATTTTTCTA-GGCTCAAAGACATTTT-AAAACTCATATCA
* * * *
83206125 AATGACCCCCTAAGTGTTTGGATATGACAATTACATAAAGTGGACTTCCGATAAATTAAAATGCA
129 AATCACCCCCTAAGTGTTCGGATATGACAATTACATAAAATGGACTTCCAATAAATTAAAATGCA
* *
83206190 ATCAACACAATTTTACATATGTTAAAGCAATCCTGATGTAATTTAGGTGGCTAATCCCCCCTCCC
194 ATCAACACAATTTTACATATATTAAAGCAATCCTGATGCAATTTAGGTGGCTAATCCCCCCTCCC
* ** * *
83206255 CCTCAAATAACATTTTGGTAAAAACACATCTCTTAAGACAATTT-TCCTTC-TATATGAATAGTT
259 CCTCAAATAACAGTTTGACAAAAACACATCTCTTAAGACAATTTGTCCTCCATATA-G-ATAGCT
* *
83206318 ATACTCTGCCATCTAAATGACCCTACAACTACCAGTCCAAACAACACTA
322 AAACTCTGCCATCTAAATGACCCTACAACTACCAGCCCAAACAACACTA
83206367 ACCAAAGACACTTCATTTCTAAAACATTTTCAAAGCT
1 ACCAAAGACACTTCATTTCTAAAACATTTTCAAAGCT
83206404 CATTTAAACT
Statistics
Matches: 370, Mismatches: 32, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
367 3 0.01
368 8 0.02
369 279 0.75
370 80 0.22
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (370 bp):
ACCAAAGACACTTCATTTCTAAAACATTTTCAAAGCTTTAATACAGTTTTAAAATCATTTAATAA
AAATATCATAAAAACAAATTCCAACATTTTTCTAGGCTCAAAGACATTTTAAAACTCATATCAAA
TCACCCCCTAAGTGTTCGGATATGACAATTACATAAAATGGACTTCCAATAAATTAAAATGCAAT
CAACACAATTTTACATATATTAAAGCAATCCTGATGCAATTTAGGTGGCTAATCCCCCCTCCCCC
TCAAATAACAGTTTGACAAAAACACATCTCTTAAGACAATTTGTCCTCCATATAGATAGCTAAAC
TCTGCCATCTAAATGACCCTACAACTACCAGCCCAAACAACACTA
Found at i:83218136 original size:19 final size:21
Alignment explanation
Indices: 83218104--83218144 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
83218094 AATAAATATT
83218104 AAATATTAAATTTTA-TAAAA
1 AAATATTAAATTTTACTAAAA
83218124 AAATATT-AATTTTACTAAAA
1 AAATATTAAATTTTACTAAAA
83218144 A
1 A
83218145 TTAAAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
AAATATTAAATTTTACTAAAA
Found at i:83218153 original size:19 final size:18
Alignment explanation
Indices: 83218111--83218182 Score: 72
Period size: 19 Copynumber: 3.8 Consensus size: 18
83218101 ATTAAATATT
* *
83218111 AAATTTTATAAAAAAATAT
1 AAATTTTAT-AAAAATTAA
*
83218130 TAATTTTACTAAAAATTAA
1 AAATTTTA-TAAAAATTAA
83218149 AAATTTTATTAAAAATTAA
1 AAATTTTA-TAAAAATTAA
**
83218168 ATTTTTTATAAAAAT
1 AAATTTTATAAAAAT
83218183 CATAAAAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
18 7 0.16
19 37 0.82
20 1 0.02
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATTTTATAAAAATTAA
Found at i:83218432 original size:19 final size:18
Alignment explanation
Indices: 83218397--83218447 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
83218387 CTTTATAAAA
*
83218397 TTTTATA-ATTTTTTATT
1 TTTTATATATTTTATATT
83218414 TTTCTATATATTTTATATT
1 TTT-TATATATTTTATATT
*
83218433 TTTTA-CTATTTTATA
1 TTTTATATATTTTATA
83218448 AAATTTTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 12 0.40
18 6 0.20
19 12 0.40
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATATATTTTATATT
Found at i:83218436 original size:9 final size:9
Alignment explanation
Indices: 83218397--83218444 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
83218387 CTTTATAAAA
83218397 TTTTATAATT
1 TTTTAT-ATT
83218407 TTTTAT-TT
1 TTTTATATT
* *
83218415 TTCTATATA
1 TTTTATATT
83218424 TTTTATATT
1 TTTTATATT
83218433 TTTTACTATT
1 TTTTA-TATT
83218443 TT
1 TT
83218445 ATAAAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
8 7 0.22
9 13 0.41
10 12 0.38
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTATATT
Found at i:83221053 original size:32 final size:34
Alignment explanation
Indices: 83221017--83221081 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
83221007 TAACAGTGAT
*
83221017 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
83221049 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
83221082 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:83221238 original size:136 final size:136
Alignment explanation
Indices: 83220994--83221275 Score: 528
Period size: 136 Copynumber: 2.1 Consensus size: 136
83220984 TATTGGGCCT
* *
83220994 AAGCCCATTCAGGTAACAGTGATACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
83221059 AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
83221124 ATATGC
131 ATATGC
83221130 AAGCCCATTTAGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
*
83221195 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
66 AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
83221260 ATATGC
131 ATATGC
*
83221266 AAACCCATTT
1 AAGCCCATTT
83221276 GGGGAGACTA
Statistics
Matches: 142, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
136 142 1.00
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (136 bp):
AAGCCCATTTAGGTAACAGTGATACTGGGCCAAAGCCCTTTTCAGATTACAATAAACTGGGCCTT
AGCCCCTTATTCAGATAACAATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
ATATGC
Found at i:83223094 original size:26 final size:26
Alignment explanation
Indices: 83223058--83223192 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
83223048 ACATGAATTC
83223058 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
83223084 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83223110 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83223136 TTATCATG-AACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83223161 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83223187 TTATCA
1 TTATCA
83223193 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
25 24 0.23
26 80 0.77
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:83223169 original size:51 final size:52
Alignment explanation
Indices: 83223058--83223192 Score: 245
Period size: 51 Copynumber: 2.6 Consensus size: 52
83223048 ACATGAATTC
* *
83223058 TTATCATGAAACATTTACCTAACCCATTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
83223110 TTATCATGGAACATTTACCTAACCTATTATCATG-AACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
83223161 TTATCATGGAACATTTACCTAACCTATTATCA
1 TTATCATGGAACATTTACCTAACCTATTATCA
83223193 ATTTGTATCA
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
51 49 0.60
52 32 0.40
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.33
Consensus pattern (52 bp):
TTATCATGGAACATTTACCTAACCTATTATCATGAAACATTTACCTAACCCA
Found at i:83227229 original size:134 final size:134
Alignment explanation
Indices: 83226954--83227231 Score: 515
Period size: 134 Copynumber: 2.1 Consensus size: 134
83226944 TATTGGGCCT
*
83226954 AAGCCCATTCAGGTAACAGTGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 AAGCCCATTTAGGTAACAGTGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
83227019 GCCCCTTATTCAGATAACATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACAT
66 GCCCCTTATTCAGATAACATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACAT
83227084 ATGC
131 ATGC
83227088 AAGCCCATTTAGGTAACAGTGATACTGGGCCA-AGCCCTTTTCAGATTACAATAAACTGGGCCTT
1 AAGCCCATTTAGGTAACAGTG-TACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTT
83227152 AGCCCCTTATTCAGATAACAGTATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
65 AGCCCCTTATTCAGATAACA-TATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAAC
83227217 ATATGC
129 ATATGC
83227223 AA-CCCATTT
1 AAGCCCATTT
83227232 GGGGAGACTA
Statistics
Matches: 141, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
134 79 0.56
135 62 0.44
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (134 bp):
AAGCCCATTTAGGTAACAGTGTACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTA
GCCCCTTATTCAGATAACATATGGCCCATAGGCCCATTTCAAAATACATGCAACATCAATAACAT
ATGC
Found at i:83229051 original size:26 final size:26
Alignment explanation
Indices: 83229015--83229150 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
83229005 CATGATATTC
83229015 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
83229041 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83229067 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83229093 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
83229119 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
83229145 TTATCA
1 TTATCA
83229151 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:83230207 original size:17 final size:17
Alignment explanation
Indices: 83230168--83230207 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
83230158 GCTAGAAAAT
83230168 TGCACACGGTTGTGTGC
1 TGCACACGGTTGTGTGC
* *
83230185 TCCACACGGTTGTGTGG
1 TGCACACGGTTGTGTGC
83230202 TGCACA
1 TGCACA
83230208 TGGTCCGTCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.25, G:0.33, T:0.28
Consensus pattern (17 bp):
TGCACACGGTTGTGTGC
Found at i:83232672 original size:20 final size:22
Alignment explanation
Indices: 83232643--83232697 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 22
83232633 AATCCTTCTC
*
83232643 CTCTCCTCCTCTC-TT-TTTTT
1 CTCTCTTCCTCTCTTTCTTTTT
83232663 CTCTCTTCCTCTCTTTCTTTTT
1 CTCTCTTCCTCTCTTTCTTTTT
*
83232685 TTCTTCTTCCTCT
1 CTC-TCTTCCTCT
83232698 TACAAATGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 12 0.40
21 2 0.07
22 7 0.23
23 9 0.30
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (22 bp):
CTCTCTTCCTCTCTTTCTTTTT
Found at i:83232672 original size:23 final size:24
Alignment explanation
Indices: 83232638--83232697 Score: 81
Period size: 23 Copynumber: 2.6 Consensus size: 24
83232628 ACCGAAATCC
83232638 TTCTC-CTCTCCTC-CTCTCTTTTT
1 TTCTCTCT-TCCTCTCTCTCTTTTT
*
83232661 TTCTCTCTTCCTCTCTTTCTTTTT
1 TTCTCTCTTCCTCTCTCTCTTTTT
83232685 TTCT-TCTTCCTCT
1 TTCTCTCTTCCTCT
83232698 TACAAATGAC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
23 19 0.56
24 15 0.44
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (24 bp):
TTCTCTCTTCCTCTCTCTCTTTTT
Found at i:83236036 original size:25 final size:24
Alignment explanation
Indices: 83235989--83236036 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
83235979 AATTTATGAA
* * *
83235989 ACTCTTAAAATGTATAAATCTTTT
1 ACTCTAAAAATGCATAAAACTTTT
83236013 ACTCTAAAATATGCATAAAACTTT
1 ACTCTAAAA-ATGCATAAAACTTT
83236037 GGATAAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.42, C:0.15, G:0.04, T:0.40
Consensus pattern (24 bp):
ACTCTAAAAATGCATAAAACTTTT
Found at i:83238211 original size:26 final size:26
Alignment explanation
Indices: 83238146--83238200 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
83238136 AATTTAAATT
* * *
83238146 ATTTAAAAAATAA-TTTATTTTGATA
1 ATTTATAAGATAAGTTTATTTTGAAA
83238171 ATTTATAAGATAAGTTTATTTTGAAA
1 ATTTATAAGATAAGTTTATTTTGAAA
83238197 ATTT
1 ATTT
83238201 TATCATTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (26 bp):
ATTTATAAGATAAGTTTATTTTGAAA
Found at i:83245544 original size:12 final size:12
Alignment explanation
Indices: 83245519--83245569 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
83245509 TATTTCAAAT
*
83245519 TTAGATATTATTA
1 TTAGTTATT-TTA
83245532 TTA-TTATTGTTA
1 TTAGTTATT-TTA
*
83245544 TTAGTCATTTTA
1 TTAGTTATTTTA
83245556 TTAGTTATTTTA
1 TTAGTTATTTTA
83245568 TT
1 TT
83245570 TTATTTTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
12 26 0.79
13 7 0.21
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.63
Consensus pattern (12 bp):
TTAGTTATTTTA
Found at i:83246382 original size:39 final size:37
Alignment explanation
Indices: 83246339--83246445 Score: 110
Period size: 39 Copynumber: 2.9 Consensus size: 37
83246329 TTAGGGATTT
* *
83246339 TATATATATTATGTATATATTTTTTAATGCCATTAGTTA
1 TATATATATTATGTATATATTTTTAAATACCATTA--TA
* * * *
83246378 TATATTTCTTATGTATATATTCTTAAATACTATTATA
1 TATATATATTATGTATATATTTTTAAATACCATTATA
* *
83246415 TACATATA-TATATATATA-TTTTAAATACCAT
1 TATATATATTATGTATATATTTTTAAATACCAT
83246446 ATTGTGTATA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
35 11 0.20
36 9 0.16
37 7 0.12
39 29 0.52
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.51
Consensus pattern (37 bp):
TATATATATTATGTATATATTTTTAAATACCATTATA
Found at i:83250893 original size:49 final size:48
Alignment explanation
Indices: 83250779--83251093 Score: 249
Period size: 49 Copynumber: 6.6 Consensus size: 48
83250769 GGGTACGATA
* * * * *
83250779 TCGATGCCATGTTCCAAACATGGTCTTACACTGGC-TCACATATCTAAG
1 TCGATGCCATGTCCCAGACA-GGTCTTACACTGACTTCATATATCGAAG
*
83250827 TCGATGCCATGTTCCAGACAGGTCTTACACTGACTTTCATATATCGAAG
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGAC-TTCATATATCGAAG
* * * * **
83250876 CCGATGCCATGTCCCAGATAGGTCTTACACTGGCTCTCATCTATCGGTG
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGACT-TCATATATCGAAG
* * * * * *
83250925 TCAATGCCATGTCCTAGATAGGTCTTCCACTGA---CACATGTC-AAG
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGACTTCATATATCGAAG
* *
83250969 TCGATGCCATGTCCCAGGCAGGTCTTACACTGGCTTGCATA-ACTC-AAG
1 TCGATGCCATGTCCCAGACAGGTCTTACACTGACTT-CATATA-TCGAAG
* * * *
83251017 GCTGATG-CATGTCTCAGACATGTCTTACACT-AGCTCTCATA-AT-GTAG
1 TC-GATGCCATGTCCCAGACAGGTCTTACACTGA-CT-TCATATATCGAAG
*
83251064 TCGATG-CATGTCCCAGACATGTCTTACACT
1 TCGATGCCATGTCCCAGACAGGTCTTACACT
83251094 AGCACACATA
Statistics
Matches: 218, Mismatches: 37, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
44 28 0.13
45 5 0.02
46 27 0.12
47 17 0.08
48 57 0.26
49 84 0.39
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (48 bp):
TCGATGCCATGTCCCAGACAGGTCTTACACTGACTTCATATATCGAAG
Found at i:83251782 original size:20 final size:20
Alignment explanation
Indices: 83251757--83251795 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
83251747 AAAATTTCAA
83251757 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
83251777 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
83251796 AATAACCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:83256901 original size:10 final size:9
Alignment explanation
Indices: 83256886--83256911 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
83256876 ACTTCACTTG
83256886 AAAAAAAAT
1 AAAAAAAAT
83256895 AAAAAAAAT
1 AAAAAAAAT
83256904 AAAAAAAA
1 AAAAAAAA
83256912 GAAGAGGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:83257765 original size:49 final size:50
Alignment explanation
Indices: 83257685--83257930 Score: 280
Period size: 49 Copynumber: 4.9 Consensus size: 50
83257675 ACCTATTGTG
* *
83257685 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGGGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * * *
83257735 -GGTCGCATGTGTAGTTCTAAGTGCAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-TT
* * * * * **
83257785 CGATCACATGTGTGGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* ** **
83257835 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTATACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
* * *
83257885 A-GTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
83257931 GCTTTGGCTA
Statistics
Matches: 162, Mismatches: 32, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 80 0.49
50 45 0.28
51 37 0.23
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAATT
Found at i:83257960 original size:150 final size:150
Alignment explanation
Indices: 83257685--83257963 Score: 380
Period size: 150 Copynumber: 1.9 Consensus size: 150
83257675 ACCTATTGTG
* * *
83257685 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGGGTACCAGATAATTGGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGGATACCAGATAATTAGTCGCATGTGTAGT
* * * ** *
83257750 TCTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACATGTGTGGTACTAAGTGCAGGCT
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACAAGTGTGAAAATAAGTGCAGGCT
83257815 ACTACGTGTATCAGATGGTT
131 ACTACGTGTATCAGATGGTT
* * **
83257835 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTATACTGGATAATTAGTCGCATGTGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGGATACCAGATAATTAGTCGCATGTGTAGT
* * * * *
83257900 ACTAAGTGTAGGCTACTATGCGTACCAGATAGCTTTG-GCTACAAGTGTGAAAATATGTGCAGGC
66 ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATC-ACAAGTGTGAAAATAAGTGCAGGC
83257964 AACTGAGTAT
Statistics
Matches: 110, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
149 1 0.01
150 109 0.99
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (150 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGGATACCAGATAATTAGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTATGCGTACCAGATAACTTCGATCACAAGTGTGAAAATAAGTGCAGGCT
ACTACGTGTATCAGATGGTT
Found at i:83260116 original size:44 final size:44
Alignment explanation
Indices: 83260049--83260949 Score: 428
Period size: 44 Copynumber: 19.6 Consensus size: 44
83260039 TCATCATGGT
* * * *
83260049 AAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * *
83260093 AAATCTTATATCCCTAAAATTGCAATAGAGCAGATTGAAGATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA-C
** * * * * *
83260138 AAATCTTATCTTTCTAAAATTGTAGTAGAGCAGATTAAAGCTAT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * * * *
83260182 AAACCTTATCTCCTTGAAA-TTACAGTGTAACA-AGTCGAAGTTAC
1 AAATCTTATCTCCCT-AAAGTTGCAGTGGAGCAGA-TTGAAGCTAC
* * * * * *
83260226 AAGTCTTATCTCCCTGAAGTAGTAGTGGAGTAGATTGAAGATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA-C
* * * * *
83260271 GAAA-CTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAATTAC
1 -AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG---C----TAC
* *
83260322 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGTTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * **
83260366 AAATCTTATCTCCCTAAAGTTGCAGTAGAGTAAATTTAAAATAGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTA-C
* * *
83260411 AAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATTGAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * *
83260455 AAATCTTATATCTCTAAAGTTGTAGTGGAGTAGATTGAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * * * *
83260499 TAATCTTATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAACGAT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * * * *
83260543 AAGTCCTATAC-CACTAAAGTTGCAGTAGG-TCGGATTTAATATACCATAGC
1 AAATCTTAT-CTCCCTAAAGTTGCAGT-GGAGCAGA-TT--GA-AGC-TA-C
* * * * **
83260593 AAGTCTTATCTCCCTGAAGTTGAAGTGGAATAGACTAAAGCTACAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGG---AG-C---AGATTGAAGCTAC
* * ** **
83260644 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAAATGT
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * * *
83260688 TAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* ** * *
83260732 AAGTTACGAGTCTTATTTCCCTAAAGTTGCAGTGGAATAAATTAAAGCTACAAGTTAC
1 -A---A--A-TCTTATCTCCCTAAAGTTGCAGTGGAGCAGATT---G----AAGCTAC
* ** * * *
83260790 AAATCTTATCTCCCTAAAGTTGTAGTGGAATAGGTTGAAGATGC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * * *
83260834 AAACCTTATTTCCTTAAAGTTGCAGTGGAGTAGATTAAAGCCAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* * * * *
83260878 AAATATTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCAAC
1 AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
* *
83260922 AAATCTTATAC-CTCTGAAGTTGCAGTGG
1 AAATCTTAT-CTCCCTAAAGTTGCAGTGG
83260950 GTTGGAATGA
Statistics
Matches: 657, Mismatches: 152, Indels: 96
0.73 0.17 0.11
Matches are distributed among these distances:
43 3 0.00
44 363 0.55
45 118 0.18
46 2 0.00
47 2 0.00
48 6 0.01
49 4 0.01
50 24 0.04
51 116 0.18
52 5 0.01
53 2 0.00
54 3 0.00
56 1 0.00
57 2 0.00
58 6 0.01
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (44 bp):
AAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCTAC
Found at i:83260295 original size:133 final size:131
Alignment explanation
Indices: 83260048--83260537 Score: 396
Period size: 133 Copynumber: 3.6 Consensus size: 131
83260038 GTCATCATGG
* * * ** * * *
83260048 TAAATCTTATCTCCTTGAAGTTGCAGTGGAGC-AGATTAAAGCCACAAATCTTATATCCCTAAAA
1 TAAATCTTATCTCCTTAAAGTTGCAGT-GAACAAG-TTGAAGTTAC-AATCTTATCTCCCTGAAG
* * * * *
83260112 TTGCAATAGAGCAGATTGAAGATAGCAAATCTTATCTT-TCTAAAATTGTAGTAGAGCAGATTAA
63 TTGTAGTGGAGTAGATTGAAGATAGCAAATCTTAT-TTCTCTAAAGTTGTAGTAGAGCAGATTAA
83260176 AGCTA
127 AGCTA
* * *
83260181 TAAACCTTATCTCCTTGAAA-TTACAGTGTAACAAGTCGAAGTTACAAGTCTTATCTCCCTGAAG
1 TAAATCTTATCTCCTT-AAAGTTGCAGTG-AACAAGTTGAAGTTACAA-TCTTATCTCCCTGAAG
* * * * *
83260245 TAGTAGTGGAGTAGATTGAAGATAGCGAAA-CTTATTTCCCTGAAGTTGTAGTGGAACAGATTAA
63 TTGTAGTGGAGTAGATTGAAGATAGC-AAATCTTATTTCTCTAAAGTTGTAGTAGAGCAGATTAA
83260309 AGCTACAAA
127 AGCT----A
* * * *
83260318 TTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTGAAGTTACAAATCTTATCTCCCTAA
1 -T--AAATCTTATCTCCTTAAAGTTGCAGT-GAACAAGTTGAAGTTAC-AATCTTATCTCCCTGA
* * * * * * * * *
83260383 AGTTGCAGTAGAGTAAATTTAAAATAGCAAATCTTATCTCTCTAAAGTTGCAGTAGAGCAAATTG
61 AGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTTATTTCTCTAAAGTTGTAGTAGAGCAGATTA
83260448 AAGCTA
126 AAGCTA
* * * * ** *
83260454 CAAATCTTATAT-CTCTAAAGTTGTAGTGGAGTAGATTGAAGCTACTAATCTTATCTCCCTGAAG
1 TAAATCTTATCTCCT-TAAAGTTGCAGTGAACAAG-TTGAAGTTAC-AATCTTATCTCCCTGAAG
83260518 TTGTAGTGGAGTAGATTGAA
63 TTGTAGTGGAGTAGATTGAA
83260538 ACGATAAGTC
Statistics
Matches: 280, Mismatches: 58, Indels: 38
0.74 0.15 0.10
Matches are distributed among these distances:
132 8 0.03
133 156 0.56
134 7 0.03
136 1 0.00
137 1 0.00
138 1 0.00
139 6 0.02
140 97 0.35
141 3 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (131 bp):
TAAATCTTATCTCCTTAAAGTTGCAGTGAACAAGTTGAAGTTACAATCTTATCTCCCTGAAGTTG
TAGTGGAGTAGATTGAAGATAGCAAATCTTATTTCTCTAAAGTTGTAGTAGAGCAGATTAAAGCT
A
Found at i:83260655 original size:51 final size:51
Alignment explanation
Indices: 83260596--83260822 Score: 229
Period size: 51 Copynumber: 4.6 Consensus size: 51
83260586 CCATAGCAAG
* *
83260596 TCTTATCTCCCTGAAGTTGAAGTGGAATAGACTAAAGCTACAAGCTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGTTACAAA
* *
83260647 TCTTATCTCCCTGAAGTTGCAGTGG---AG-C-AAA-TTGAAAATGTT---AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCT-ACAA-GTTACAAA
* * * * * *
83260691 TCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACGAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGTTACAAA
* * * *
83260742 TCTTATTTCCCTAAAGTTGCAGTGGAATAAATTAAAGCTACAAGTTACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGTTACAAA
* *
83260793 TCTTATCTCCCTAAAGTTGTAGTGGAATAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAATAG
83260823 GTTGAAGATG
Statistics
Matches: 146, Mismatches: 19, Indels: 22
0.78 0.10 0.12
Matches are distributed among these distances:
44 25 0.17
45 1 0.01
46 6 0.04
47 5 0.03
48 5 0.03
49 6 0.04
50 1 0.01
51 97 0.66
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31
Consensus pattern (51 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGTTACAAA
Found at i:83260708 original size:95 final size:95
Alignment explanation
Indices: 83260596--83260767 Score: 263
Period size: 95 Copynumber: 1.8 Consensus size: 95
83260586 CCATAGCAAG
* *
83260596 TCTTATCTCCCTGAAGTTGAAGTGGAATAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTGA
1 TCTTATCTCCCTGAAGTTGAAGTGGAACAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTAA
83260661 AGTTGCAGTGGAGCAAATTGAAAATGTTAA
66 AGTTGCAGTGGAGCAAATTGAAAATGTTAA
* * * * * * *
83260691 TCTTATTTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTTACGAGTCTTATTTCCCTAA
1 TCTTATCTCCCTGAAGTTGAAGTGGAACAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTAA
83260756 AGTTGCAGTGGA
66 AGTTGCAGTGGA
83260768 ATAAATTAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 68 1.00
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31
Consensus pattern (95 bp):
TCTTATCTCCCTGAAGTTGAAGTGGAACAGACTAAAGCTACAAGCTACAAATCTTATCTCCCTAA
AGTTGCAGTGGAGCAAATTGAAAATGTTAA
Found at i:83262595 original size:12 final size:12
Alignment explanation
Indices: 83262578--83262618 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
83262568 AATTTAGATA
83262578 TTATTA-TTATT
1 TTATTAGTTATT
*
83262589 GTTATTAGTCATT
1 -TTATTAGTTATT
83262602 TTATTAGTTATT
1 TTATTAGTTATT
83262614 TTATT
1 TTATT
83262619 TTATTTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 22 0.85
13 4 0.15
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.66
Consensus pattern (12 bp):
TTATTAGTTATT
Found at i:83263670 original size:24 final size:24
Alignment explanation
Indices: 83263642--83263696 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
83263632 GCCATACGGG
* *
83263642 CGTGTTGTCGCCCGTGTGGTAAGT
1 CGTGTGGTCGCCCATGTGGTAAGT
*
83263666 CGTGTGGTCGCCCATGTGGTAGGT
1 CGTGTGGTCGCCCATGTGGTAAGT
83263690 CGTGTGG
1 CGTGTGG
83263697 CAGTACACGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.07, C:0.20, G:0.42, T:0.31
Consensus pattern (24 bp):
CGTGTGGTCGCCCATGTGGTAAGT
Found at i:83267939 original size:2 final size:2
Alignment explanation
Indices: 83267932--83267961 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
83267922 GATATGTGCA
*
83267932 AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
83267962 GTACATAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:83268151 original size:39 final size:37
Alignment explanation
Indices: 83268054--83268151 Score: 99
Period size: 39 Copynumber: 2.6 Consensus size: 37
83268044 TATGGTATTT
* * * *
83268054 AAAATATATATAT-ATATATGTATATAATAGTATTTA
1 AAAATATATACATAATATATATATATAATAGCATTAA
* * * *
83268090 AGAATATATACATAAGAAATATATAACTAATGGCATTAA
1 AAAATATATACATAATATATATAT-A-TAATAGCATTAA
83268129 AAAATATATACATAATATATATA
1 AAAATATATACATAATATATATA
83268152 AAATACCTAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
36 11 0.23
37 7 0.15
38 1 0.02
39 29 0.60
ACGTcount: A:0.54, C:0.04, G:0.06, T:0.36
Consensus pattern (37 bp):
AAAATATATACATAATATATATATATAATAGCATTAA
Found at i:83268661 original size:18 final size:18
Alignment explanation
Indices: 83268638--83268701 Score: 50
Period size: 19 Copynumber: 3.8 Consensus size: 18
83268628 GGTTTTTTTA
83268638 GTTTTTTTTTGGGGTTAG
1 GTTTTTTTTTGGGGTTAG
83268656 GTTTTTCTTTT----TT--
1 GTTTTT-TTTTGGGGTTAG
* *
83268669 CTTTTTTTTTTGGGTTAG
1 GTTTTTTTTTGGGGTTAG
83268687 GTTTTTTTTTTGGGG
1 G-TTTTTTTTTGGGG
83268702 GGTTAATGGG
Statistics
Matches: 35, Mismatches: 3, Indels: 15
0.66 0.06 0.28
Matches are distributed among these distances:
12 4 0.11
13 5 0.14
15 2 0.06
16 2 0.06
18 6 0.17
19 16 0.46
ACGTcount: A:0.03, C:0.03, G:0.25, T:0.69
Consensus pattern (18 bp):
GTTTTTTTTTGGGGTTAG
Found at i:83268675 original size:32 final size:30
Alignment explanation
Indices: 83268630--83268697 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 30
83268620 GTGGCTAGGG
** *
83268630 TTTTTTTAGTTTTTTTTTGGGGTTAGGTTT
1 TTTTTTTTCTTTTTTTTTTGGGTTAGGTTT
83268660 TTCTTTTTTCTTTTTTTTTTGGGTTAGGTTT
1 TT-TTTTTTCTTTTTTTTTTGGGTTAGGTTT
83268691 TTTTTTT
1 TTTTTTT
83268698 GGGGGGTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 7 0.21
31 27 0.79
ACGTcount: A:0.04, C:0.03, G:0.18, T:0.75
Consensus pattern (30 bp):
TTTTTTTTCTTTTTTTTTTGGGTTAGGTTT
Found at i:83269554 original size:30 final size:30
Alignment explanation
Indices: 83269518--83269578 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 30
83269508 TTTGAAAAAT
83269518 AGAAATT-AAAAGACTCAACTCAACTCTCGC
1 AGAAATTAAAAAG-CTCAACTCAACTCTCGC
*
83269548 AGAAATTAAAAAGCTCAACTCACCTCTCGC
1 AGAAATTAAAAAGCTCAACTCAACTCTCGC
83269578 A
1 A
83269579 ATATGAGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.43, C:0.28, G:0.10, T:0.20
Consensus pattern (30 bp):
AGAAATTAAAAAGCTCAACTCAACTCTCGC
Found at i:83269696 original size:14 final size:14
Alignment explanation
Indices: 83269673--83269707 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
83269663 TGAGTTGATT
83269673 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
83269686 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
83269700 TTTGAAAA
1 TTTGAAAA
83269708 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:83269696 original size:88 final size:88
Alignment explanation
Indices: 83269602--83269763 Score: 236
Period size: 88 Copynumber: 1.8 Consensus size: 88
83269592 TTTTTTGAAA
* * *
83269602 AAAAACAGAAATTGAAAATAGCTC-AGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCGA-CACGTGACCCAAGGCTCAACTCACATCTCGCAATATGA
83269666 GTTGATTTTTGAAAACAGAATTTG
65 GTTGATTTTTGAAAACAGAATTTG
** * * *
83269690 AAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAG
1 AAAAACAGAAATTGAAAATACCTCGACACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
83269755 TTGATTTTT
66 TTGATTTTT
83269764 TTGAAAAATA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
88 64 0.98
89 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCGACACGTGACCCAAGGCTCAACTCACATCTCGCAATATGAG
TTGATTTTTGAAAACAGAATTTG
Found at i:83270158 original size:79 final size:74
Alignment explanation
Indices: 83269899--83270247 Score: 443
Period size: 79 Copynumber: 4.6 Consensus size: 74
83269889 AACTCATTTG
* ** **
83269899 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
83269964 TTTTTTGAA
66 TTTTTTGAA
* * ** *
83269973 AGACAGAAATTGAAAATACCTCAGCCTGTGAAC-CGAGGCTCAACTCACCTCTCGCAATATAAGT
1 A-ACAGAAATTGAAAATACCTCAG-C-GTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
83270037 TGATTTTTTTGAA
62 TGATTTTTTTGAA
* *
83270050 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-
83270115 TTTTTTTTTTGAAA
65 ---TTTTTTTG-AA
* *
83270129 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGA-
1 AACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
*
83270193 -ATTTTGAA
66 TTTTTTGAA
* *
83270201 AACAGAAATTGAAATTACCTCAGTGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
83270248 TGAACAGAAA
Statistics
Matches: 243, Mismatches: 22, Indels: 22
0.85 0.08 0.08
Matches are distributed among these distances:
72 45 0.19
73 6 0.02
74 33 0.14
75 21 0.09
76 21 0.09
77 46 0.19
78 9 0.04
79 62 0.26
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAT
TTTTTTGAA
Found at i:83270198 original size:151 final size:148
Alignment explanation
Indices: 83269899--83270247 Score: 486
Period size: 151 Copynumber: 2.3 Consensus size: 148
83269889 AACTCATTTG
** *
83269899 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
* * *
83269964 TTTTTTGAAAGACAGAAATTGAAAATACCTCAGCCTGTGAACCGAGGCTCAACTCACCTCTCGCA
66 TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGT--ACCGAGGCTCAACTAACCTCTCGCA
*
83270029 ATATAAGTTGATTTTTTTGAA
129 ATATAAGTTGA-TATTTTGAA
* *
83270050 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA-
* **
83270115 TTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGT-CTTGAGGCTCAACTAATTTCTC
65 ---TTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTAC-CGAGGCTCAACTAACCTCTC
*
83270179 GCAATATGAGTTGA-ATTTTGAA
126 GCAATATAAGTTGATATTTTGAA
*
83270201 AACAGAAATTGAAATTACCTCAGTGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTT
83270248 TGAACAGAAA
Statistics
Matches: 177, Mismatches: 16, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
151 110 0.62
152 1 0.01
153 29 0.16
155 37 0.21
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (148 bp):
AACAGAAATTGAAATTACCTCAATGTGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGAT
TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTACCGAGGCTCAACTAACCTCTCGCAAT
ATAAGTTGATATTTTGAA
Found at i:83270267 original size:49 final size:49
Alignment explanation
Indices: 83270201--83270296 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
83270191 GAATTTTGAA
**
83270201 AACAGAAATTGAAATTACCTCAGTGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
83270250 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
83270297 CTCGCAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:83270343 original size:121 final size:121
Alignment explanation
Indices: 83270129--83270368 Score: 417
Period size: 121 Copynumber: 2.0 Consensus size: 121
83270119 TTTTTTGAAA
*
83270129 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
* **
83270194 TTTTGAAAACAGAAATTGAAATTACCTCAGTGTGTCTTGAGGCTCAACTCATTTTG
66 TTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
* * *
83270250 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
83270315 TTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 TTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
83270369 CTCTCAATAT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
121 112 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (121 bp):
AACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTAATTTCTCGCAATATGAGTTGAA
TTTTGAAAACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:83270359 original size:72 final size:72
Alignment explanation
Indices: 83270250--83270390 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 72
83270240 ACTCATTTTG
*
83270250 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
83270315 TTTTGAA
66 TTTTGAA
*
83270322 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCTCAATATGAGTTGAA
1 AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
83270387 TTTT
66 TTTT
83270391 TTTTTTGAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (72 bp):
AACAAAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:83270539 original size:54 final size:55
Alignment explanation
Indices: 83270439--83270544 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 55
83270429 GAACCGAGGC
* *
83270439 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* * *
83270493 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAAAAAGCAGAAATTGAAAA
83270545 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
54 34 0.76
55 11 0.24
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:83270551 original size:13 final size:13
Alignment explanation
Indices: 83270524--83270557 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
83270514 GAGTTGATTC
*
83270524 TTGAACAACATAAA
1 TTGAA-AACAGAAA
83270538 TTGAAAACAGAAA
1 TTGAAAACAGAAA
83270551 TTGAAAA
1 TTGAAAA
83270558 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:83270605 original size:140 final size:140
Alignment explanation
Indices: 83270395--83270963 Score: 998
Period size: 140 Copynumber: 4.0 Consensus size: 140
83270385 AATTTTTTTT
*
83270395 TTGAAAGACGGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAATA
83270459 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
62 TGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTC
83270524 TTGAACAACATAAA
127 TTGAACAACATAAA
83270538 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
83270603 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCGCTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
83270668 ACAACGTAAA
131 ACAACATAAA
*
83270678 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
83270743 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
83270808 ACAACGTAAA
131 ACAACATAAA
*
83270818 TTGAAAACAGAAATTGAAAATATCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
83270883 CTAATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG-
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
83270947 ACAAACAGAAA
131 AC-AACATAAA
83270958 TTGAAA
1 TTGAAA
83270964 TTACCTCATC
Statistics
Matches: 412, Mismatches: 12, Indels: 7
0.96 0.03 0.02
Matches are distributed among these distances:
139 5 0.01
140 379 0.92
142 22 0.05
143 6 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACATAAA
Found at i:83270819 original size:54 final size:54
Alignment explanation
Indices: 83270719--83270824 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
83270709 GACCTGAGGC
*
83270719 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
83270773 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
83270825 CAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:83271005 original size:73 final size:71
Alignment explanation
Indices: 83270913--83271109 Score: 270
Period size: 74 Copynumber: 2.7 Consensus size: 71
83270903 ATTAAAAGGT
* * * *
83270913 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAAACAGAAATTGAAAATACCTCAGCGTG-
*
83270978 CCTGAGGC
64 CCCGAGGC
*
83270986 TCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGT
1 TCAACTCACCTCTCGCAATATGAGTTGA---TTTTGAAAAACAGAAATTGAAAATACCTCAGCGT
83271051 GCCCGAGGC
63 GCCCGAGGC
* *
83271060 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATT-AAAA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTGAAAA
83271110 GGCTTAACTC
Statistics
Matches: 112, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
70 4 0.04
71 17 0.15
73 26 0.23
74 33 0.29
75 30 0.27
76 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.15, T:0.27
Consensus pattern (71 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCC
CGAGGC
Found at i:83271113 original size:127 final size:122
Alignment explanation
Indices: 83270982--83271231 Score: 315
Period size: 122 Copynumber: 2.0 Consensus size: 122
83270972 TCGTGTCCTG
* * * *
83270982 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATAAG-TCA---ATTT--AAAACAGAAACTAAAAATACCTCA
* **
83271047 GCGT-GCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAA-ACAAAAATTAAA
60 GCGTCCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATT-AAAACACAAAAATTAAA
* * *
83271109 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCAGCGTCC
1 AGGCTCAACTCACCTCTCGCAATATAAGTCAATTTAAAACAGAAACTAAAAATACCTCAGCGTCC
* *
83271174 CCCGAGGCTCAATTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAA
66 CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTAAAACACAAAAATTAAA
83271231 A
1 A
83271232 ATACCTCAGC
Statistics
Matches: 109, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
121 29 0.27
122 49 0.45
123 3 0.03
126 2 0.02
127 26 0.24
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.25
Consensus pattern (122 bp):
AGGCTCAACTCACCTCTCGCAATATAAGTCAATTTAAAACAGAAACTAAAAATACCTCAGCGTCC
CCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGAAATTAAAACACAAAAATTAAA
Found at i:83271251 original size:72 final size:71
Alignment explanation
Indices: 83271109--83271303 Score: 268
Period size: 72 Copynumber: 2.7 Consensus size: 71
83271099 AAAAATTAAA
* * * * *
83271109 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAAACATAAACTAAAAATACCTCAGCGT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACAAAAATTAAAAATACCTCAGCGT
83271172 CCCCCG
66 CCCCCG
*
83271178 AGGCTCAATTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAA-ACAAAAATTAAAAATACCTCAGCG
*
83271243 TGCCCCG
65 TCCCCCG
* **
83271250 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAAACAAAAATTAAAA
83271304 GGCTTAACTC
Statistics
Matches: 111, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.23
70 1 0.01
71 7 0.06
72 73 0.66
73 4 0.04
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.24
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAACAAAAATTAAAAATACCTCAGCGT
CCCCCG
Found at i:83271277 original size:194 final size:192
Alignment explanation
Indices: 83270815--83271477 Score: 869
Period size: 194 Copynumber: 3.4 Consensus size: 192
83270805 TGAACAACGT
* * * * * *
83270815 AAATTGAAAACAGAAATTGAAAATATCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTAAAAACAAAAATTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATAT
* * * * * * *
83270880 GAGCTAATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGTTGATTC
65 GAGTTGATTTTGAAAAA-CAAAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAG-TCAAT-
* * * * * * * *
83270944 TTGACAAACAGAAATTGAAATTACCTCATCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAA
126 TT-A-AAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
83271009 GTTG
189 GTTG
** * *
83271013 ATTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAA
1 A---AATT-AAAAACAAAAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAA
83271078 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
62 TATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATT
* *
83271143 TAAAACATAAACTAAAAATACCTCAGCGTCCCCCGAGGCTCAATTCACCTCTCGCAATATGAGTT
127 TAAAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
83271208 G
192 G
83271209 AAATTAAAACACAAAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATA
1 AAATTAAAA-ACAAAAATTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATA
83271274 TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTA
64 TGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTA
*
83271339 AAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
129 AAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
** * * ** * *
83271403 ATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATAT
1 AAATTAAAAACAAAAATTAAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTAGCAATAT
83271468 GAGTTGATTT
65 GAGTTGATTT
83271478 CCCTTGAAAA
Statistics
Matches: 419, Mismatches: 39, Indels: 19
0.88 0.08 0.04
Matches are distributed among these distances:
192 4 0.01
193 86 0.21
194 160 0.38
196 55 0.13
197 1 0.00
198 3 0.01
199 3 0.01
200 33 0.08
201 46 0.11
202 28 0.07
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.26
Consensus pattern (192 bp):
AAATTAAAAACAAAAATTAAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTAGCAATATG
AGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAA
ACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
Found at i:83271398 original size:122 final size:124
Alignment explanation
Indices: 83271178--83271424 Score: 392
Period size: 122 Copynumber: 2.0 Consensus size: 124
83271168 GCGTCCCCCG
* *
83271178 AGGCTCAATTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
83271243 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
* * * *
83271303 AGGCTTAACTCACCTCTCGCAATATGAG-T-CAATTTAAA-ACATAAACTAAAAATACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
* *
83271365 TGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
66 TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
83271424 A
1 A
83271425 ATACCTCAAC
Statistics
Matches: 114, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
121 16 0.14
122 64 0.56
123 7 0.06
124 1 0.01
125 26 0.23
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (124 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAACTAAAAATACCTCAGCG
TGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAAATTAAA
Found at i:83271446 original size:71 final size:70
Alignment explanation
Indices: 83271303--83271477 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
83271293 AAAAATTAAA
* * * * * *
83271303 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
83271367 CCCCG
66 CCCCG
*
83271372 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
83271437 GTCTTG
65 GCCCCG
83271443 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
83271478 CCCTTGAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:83276514 original size:12 final size:12
Alignment explanation
Indices: 83276494--83276529 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
83276484 TGGGATATGC
*
83276494 AATGTATGAATG
1 AATGCATGAATG
83276506 AATGCATGAATG
1 AATGCATGAATG
83276518 AATGCATGAATG
1 AATGCATGAATG
83276530 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:83278225 original size:19 final size:19
Alignment explanation
Indices: 83278201--83278287 Score: 68
Period size: 19 Copynumber: 4.3 Consensus size: 19
83278191 GTAATAAAAT
83278201 ATAAAATAATAATATGTAC
1 ATAAAATAATAATATGTAC
* *
83278220 ATAAAATACATATATATAATAT
1 ATAAAATA-ATA-ATAT-GTAC
* *
83278242 ATGCATATAATAATATGTA-
1 AT-AAAATAATAATATGTAC
*
83278261 ATAATAATAATAATATCTAC
1 ATAA-AATAATAATATGTAC
83278281 AATAAAA
1 -ATAAAA
83278288 GAAAATATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
18 1 0.02
19 22 0.42
20 7 0.13
21 12 0.23
22 7 0.13
23 4 0.08
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.33
Consensus pattern (19 bp):
ATAAAATAATAATATGTAC
Found at i:83278248 original size:26 final size:26
Alignment explanation
Indices: 83278206--83278273 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 26
83278196 AAAATATAAA
*
83278206 ATAATAATATGTACATAAAATACATAT
1 ATAATAATATATACATAAAATA-ATAT
* *
83278233 AT-ATAATATATGCATATAATAATAT
1 ATAATAATATATACATAAAATAATAT
*
83278258 GTAATAATA-ATA-ATAA
1 ATAATAATATATACATAA
83278274 TATCTACAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
24 3 0.09
25 7 0.21
26 22 0.65
27 2 0.06
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.35
Consensus pattern (26 bp):
ATAATAATATATACATAAAATAATAT
Found at i:83278249 original size:13 final size:14
Alignment explanation
Indices: 83278206--83278269 Score: 55
Period size: 13 Copynumber: 4.6 Consensus size: 14
83278196 AAAATATAAA
83278206 ATAATAATATGTACAT
1 ATAATAATATG--CAT
*
83278222 AAAATACATAT--AT
1 ATAATA-ATATGCAT
83278235 ATAAT-ATATGCAT
1 ATAATAATATGCAT
*
83278248 ATAATAATATGTA-
1 ATAATAATATGCAT
83278261 ATAATAATA
1 ATAATAATA
83278270 ATAATATCTA
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
11 4 0.10
13 22 0.54
14 6 0.15
16 5 0.12
17 4 0.10
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (14 bp):
ATAATAATATGCAT
Found at i:83279138 original size:16 final size:15
Alignment explanation
Indices: 83279119--83279173 Score: 60
Period size: 16 Copynumber: 3.5 Consensus size: 15
83279109 TAATGATATG
83279119 AATAATAAAATATATA
1 AATAATAAAATAT-TA
83279135 AAT-ATAAAATATTA
1 AATAATAAAATATTA
83279149 AA-ATATCAAAATATTA
1 AATA-AT-AAAATATTA
83279165 GAATAATAA
1 -AATAATAA
83279174 TAATTAATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
14 4 0.12
15 11 0.32
16 14 0.41
17 4 0.12
18 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
AATAATAAAATATTA
Found at i:83279150 original size:23 final size:23
Alignment explanation
Indices: 83279119--83279173 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
83279109 TAATGATATG
83279119 AATAATAAAATAT-ATAAATATAA
1 AATAATAAAATATCA-AAATATAA
* *
83279142 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATA-TAA
83279166 AATAATAA
1 AATAATAA
83279174 TAATTAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.63
24 10 0.37
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (23 bp):
AATAATAAAATATCAAAATATAA
Found at i:83279159 original size:8 final size:7
Alignment explanation
Indices: 83279123--83279162 Score: 53
Period size: 8 Copynumber: 5.3 Consensus size: 7
83279113 GATATGAATA
83279123 ATAAAAT
1 ATAAAAT
83279130 ATATAAAT
1 ATA-AAAT
83279138 ATAAAAT
1 ATAAAAT
83279145 ATTAAAAT
1 A-TAAAAT
83279153 ATCAAAAT
1 AT-AAAAT
83279161 AT
1 AT
83279163 TAGAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
7 9 0.30
8 21 0.70
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (7 bp):
ATAAAAT
Found at i:83279169 original size:8 final size:8
Alignment explanation
Indices: 83279119--83279169 Score: 52
Period size: 8 Copynumber: 6.5 Consensus size: 8
83279109 TAATGATATG
*
83279119 AATAATAA
1 AATATTAA
83279127 AATA-TATA
1 AATATTA-A
83279135 AATA-TAA
1 AATATTAA
83279142 AATATTAA
1 AATATTAA
*
83279150 AATATCAA
1 AATATTAA
*
83279158 AATATTAG
1 AATATTAA
83279166 AATA
1 AATA
83279170 ATAATAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
7 7 0.18
8 31 0.82
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:83279388 original size:22 final size:24
Alignment explanation
Indices: 83279325--83279389 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
83279315 CGTGATAATA
*
83279325 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
83279350 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
83279373 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
83279390 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:83280934 original size:15 final size:15
Alignment explanation
Indices: 83280914--83280946 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
83280904 TTGATTTTTG
*
83280914 AAAAATATAAATTGA
1 AAAAATAGAAATTGA
83280929 AAAAATAGAAATTGA
1 AAAAATAGAAATTGA
83280944 AAA
1 AAA
83280947 GCAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (15 bp):
AAAAATAGAAATTGA
Found at i:83281080 original size:74 final size:76
Alignment explanation
Indices: 83280993--83281256 Score: 385
Period size: 77 Copynumber: 3.5 Consensus size: 76
83280983 GTGGCCGAGA
* * **
83280993 CTCAACTCACCTCTCGCAATATGAATTGA-TTTTTGAAAAGCAGAAATTGAAAACGCCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAAAGCCTCAGCAC
**
83281057 GTGA-CCGAGG
66 GTGAGCAAAGG
83281067 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAGCAGAAATTGAAAATAG-CTCAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAA-AGCCTCAGCA
83281130 CGTGAGCAAAGG
65 CGTGAGCAAAGG
* ** *
83281142 CTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAAATACTTAGCA
1 CTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGAAAAGCAGAAATTGAAAAAGCCTCAGCA
83281207 CGTGAGCAAAGG
65 CGTGAGCAAAGG
83281219 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
83281257 CTTAACTTGA
Statistics
Matches: 174, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
74 55 0.32
75 49 0.28
76 7 0.04
77 63 0.36
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (76 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTGAAAAAGCCTCAGCAC
GTGAGCAAAGG
Found at i:83281328 original size:239 final size:237
Alignment explanation
Indices: 83281056--83281977 Score: 957
Period size: 246 Copynumber: 3.8 Consensus size: 237
83281046 CGCCTCAGCG
*
83281056 TGTGACC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAAGCAGAAATTGAAA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
* * * *
83281119 ATAGCTCAGCACGTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAG
66 ATACCTCAGC-CGTGATCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
* *
83281184 CAGAAATTGAAAAATA-CTTAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
130 CAGAAATTG-AAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
** *
83281248 TTTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATA
194 TTTTTGAAACAGAA-TTGAAAA-CAGATTTTGAAAATACCTCGACA
* * *
83281294 TGT-AACTGAAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTAAA
1 TGTGACCTG-AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAA
* * * * *
83281357 AGACTTAACTCAACTC-TCGCAAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATT
65 A-A--TACCTCAGC-CGT-G----A-TCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * *
83281421 TTTTGAAAA-AAAAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAAT
120 TTTTGAAAAGCAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
83281485 ATGAGTTGATTTTTGAAAACAGAATCTG-AAA-A-ATTTTGAAAATACCTCGACA
185 ATGAGTTGATTTTTG-AAACAGAAT-TGAAAACAGATTTTGAAAATACCTCGACA
* * * * *
83281537 TGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTG--
** *
83281602 AAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-
63 AAAATACCTCAG-CCGTGATC-AAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA
83281665 AAAGACAGAAATTGAAAATAGCTCAG--CGTGAGCCAAGGCTCAACTCACCTCTCGCAATA-GAG
126 AAAG-CAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* ** * *
83281727 TTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCG
190 TTGA----TTTTTGAAA--CAG-AATTG-AAAACAGATTTTGAAAATACCTCGACA
* * * * *
83281783 TGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTAACAACAGAAATTGAAA
1 TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
* ** *
83281848 TTACCTCAG-CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA
66 ATACCTCAGCCGTGAT-CAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAG
* * ** ** *
83281911 CAGAAATTGAAAATACCTCAGCA--TG-TCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
130 CAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
83281973 TTTTT
194 TTTTT
83281978 TTTTTGAAAA
Statistics
Matches: 575, Mismatches: 66, Indels: 86
0.79 0.09 0.12
Matches are distributed among these distances:
237 9 0.02
238 50 0.09
239 83 0.14
240 29 0.05
241 92 0.16
242 24 0.04
243 65 0.11
244 14 0.02
245 41 0.07
246 115 0.20
247 53 0.09
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29
Consensus pattern (237 bp):
TGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAA
ATACCTCAGCCGTGATCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGC
AGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTGAAACAGAATTGAAAACAGATTTTGAAAATACCTCGACA
Found at i:83281395 original size:29 final size:29
Alignment explanation
Indices: 83281349--83281407 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
83281339 TGAAAAACAG
*
83281349 AAATTAAAAGACTTAACTCAACTCTCGCA
1 AAATTAAAAGACTCAACTCAACTCTCGCA
*
83281378 AAATTAAAA-AGCTCAACTCACCTCTCGCA
1 AAATTAAAAGA-CTCAACTCAACTCTCGCA
83281407 A
1 A
83281408 TATGAGTTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 1 0.04
29 26 0.96
ACGTcount: A:0.44, C:0.27, G:0.07, T:0.22
Consensus pattern (29 bp):
AAATTAAAAGACTCAACTCAACTCTCGCA
Found at i:83281524 original size:84 final size:81
Alignment explanation
Indices: 83280993--83281737 Score: 464
Period size: 75 Copynumber: 9.4 Consensus size: 81
83280983 GTGGCCGAGA
* * * **
83280993 CTCAACTCACCTCTCGCAATATGAATTGA--TTTTTGAAA-AGC-AGAAA--TTGAAAACGCCTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTGAAAATACCTC
** *
83281052 AGCGTGTGA-CCGAGG
66 AGCACGTGAGCCAAGG
* *
83281067 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAG--C-AGAAA--TTGAAAATAGCTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTGAAAATACCTC
*
83281126 AGCACGTGAGCAAAGG
66 AGCACGTGAGCCAAGG
* * * *
83281142 CTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAA-AGC-AGAAA--TTGAAAAATA-CT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTG-AAAATACCT
* *
83281202 TAGCACGTGAGCAAAGG
65 CAGCACGTGAGCCAAGG
*
83281219 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAACTTAACTTGAAAAGCAGATTTTGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA--GAAC-T--AAA--A-ATTTTGAA
** * *
83281282 AATACCTC-G-ATATGTAACTGAAGG
58 AATACCTCAGCACGTG-AGC-CAAGG
* * * *
83281306 TTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAA-AAC-AGAAA--TTAAAAGACTTAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTGAAA-A--TAC
* * *** *
83281365 CTCAACTC-TCGCAAAATTAAAAAG
63 CTCAGCACGT-G----A-GCCAAGG
* *
83281389 CTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAA-AA--AAAAA--TTGAAAATAGCTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTGAAAATACCTC
83281449 AGCACGTGAGCCAAGG
66 AGCACGTGAGCCAAGG
* ***
83281465 CTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATCTGAAAAATTTTGAAAATAC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AGAA-CT-AAAAATTTTGAAAATAC
* * *
83281530 CTC-GACATGTGACCCGAGG
63 CTCAG-CACGTGAGCCAAGG
* * * ***
83281549 CTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAA-AA-TATAAATTGAAAAAATACCTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTGAAAATACCTC
*** * *
83281612 AGTGTGTGATCTGAA-G
66 AGCACGTGAGC-CAAGG
* *
83281628 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAG-AC-AGAAA--TTGAAAATAGCTC
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTGAAAATACCTC
83281689 AG--CGTGAGCCAAGG
66 AGCACGTGAGCCAAGG
83281703 CTCAACTCACCTCTCGCAATA-GAGTTGATTTTTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
83281738 TTGAAAGGCA
Statistics
Matches: 547, Mismatches: 75, Indels: 98
0.76 0.10 0.14
Matches are distributed among these distances:
74 67 0.12
75 81 0.15
76 47 0.09
77 69 0.13
78 16 0.03
79 67 0.12
80 6 0.01
81 9 0.02
82 10 0.02
83 35 0.06
84 70 0.13
85 15 0.03
86 9 0.02
87 46 0.08
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (81 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGAACTAAAAATTTTGAAAATACCTC
AGCACGTGAGCCAAGG
Found at i:83281655 original size:322 final size:319
Alignment explanation
Indices: 83281066--83281682 Score: 754
Period size: 322 Copynumber: 1.9 Consensus size: 319
83281056 TGTGACCGAG
** *
83281066 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATAGCTCAGCAC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAAAATTGAAAATAGCTCAGCAC
*
83281131 GTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAA
66 GTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAAAAATTGAAA
* * *
83281196 AATACTTAGCACGTGAGCAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAACTTA
131 AATACCTAGCACGTGACCAAAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAA--TA
*** *
83281261 ACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTAACTGAAGGTTCAACTCACCTCTCGCAAT
194 AC-T-AAAA-CAGATTGAAAAAATACCTCGATATGTAACTGAAGGCTCAACTCACCTCTCGCAAT
83281326 ATGAGTTGA-TTTTTGAAAAACAGAAATT-AAAAGACTTAACTCAACTCTCGCAAAATTAAAAA
256 ATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAGACTTAACTCAACTCTCGCAAAATTAAAAA
83281388 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAAAAAAAAATTGAAAATAGCTCAGCA
1 GCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTGAAAAAAAAAATTGAAAATAGCTCAGCA
* * *
83281453 CGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-T-TTTTGAAAACAGAATCTGAAA
65 CGTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTG-AAA-AG---C--AAA
* * ** *
83281516 AATTTTG-AAAATACCTCGACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGAGTTGATT
123 AA--TTGAAAAATACCTAG-CACGTGACCAAAGGCTCAACTCACATCTCGCAATATGAGTTGA--
* * *
83281580 TTTTTGAAA-AA-T-ATA-A-ATTGAAAAAATACCTC-AGTGTGTGATCTGAA-GCTCAACTCAC
183 TTTTTGAAATAACTAAAACAGATTGAAAAAATACCTCGA-TATGT-AACTGAAGGCTCAACTCAC
*
83281638 CTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAA
246 CTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAA
83281683 TAGCTCAGCG
Statistics
Matches: 254, Mismatches: 23, Indels: 33
0.82 0.07 0.11
Matches are distributed among these distances:
321 6 0.02
322 79 0.31
323 79 0.31
324 18 0.07
325 6 0.02
326 1 0.00
327 1 0.00
328 4 0.02
329 11 0.04
330 40 0.16
332 9 0.04
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (319 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAAAAAAATTGAAAATAGCTCAGCAC
GTGAGCAAAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAAAAATTGAAA
AATACCTAGCACGTGACCAAAGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAATAAC
TAAAACAGATTGAAAAAATACCTCGATATGTAACTGAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAAAACAGAAATTGAAAAGACTTAACTCAACTCTCGCAAAATTAAAAA
Found at i:83281750 original size:76 final size:76
Alignment explanation
Indices: 83281388--83281758 Score: 365
Period size: 79 Copynumber: 4.7 Consensus size: 76
83281378 AAATTAAAAA
* * *
83281388 GCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTGAAA-AAAAAAATTGAAAATAGCTCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAG-
83281452 ACGTGAGCCAAG
65 ACGTGAGCCAAG
* ***
83281464 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATCTGAAAAATTTTGAAAATA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AG-A-C--AAAAA--TTGAAAATA
* *
83281529 CCTC-GACATGTGACCCGAG
59 CCTCAGAC--GTGAGCCAAG
* * * * *
83281548 GCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTCA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTG--AAAATACCTCA
** * *
83281613 GTGTGTGATCTGAA-
64 G-ACGTGAGC-CAAG
* *
83281627 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATAGCTCAG-
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGA
83281691 CGTGAGCCAAG
66 CGTGAGCCAAG
* *
83281702 GCTCAACTCACCTCTCGCAATA-GAGTTGATTTTTTTTTGAAAGGCAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTGAAAGACAAAAATTGAAAA
83281759 ACGGAAATTG
Statistics
Matches: 245, Mismatches: 32, Indels: 36
0.78 0.10 0.12
Matches are distributed among these distances:
74 9 0.04
75 27 0.11
76 60 0.24
77 15 0.06
79 67 0.27
80 2 0.01
82 8 0.03
83 2 0.01
84 55 0.22
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29
Consensus pattern (76 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGA
CGTGAGCCAAG
Found at i:83281828 original size:90 final size:88
Alignment explanation
Indices: 83281662--83281847 Score: 223
Period size: 90 Copynumber: 2.1 Consensus size: 88
83281652 GTTGATTTTT
* * *
83281662 TTGAAAGACAGAAATTGAAAATAGCTCAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAGAG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAGAG
*
83281727 TTGATTTTTTTTTGAA-AGGCAGAAA
66 TTGA--TTTTTTTGAACA-ACAGAAA
* * * * *
83281752 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGAG-CC-AAGGCTCAACTCACCTCTCACAATA-
83281817 GAGTTGATTTTTTT-AACAACAGAAA
63 GAGTTGATTTTTTTGAACAACAGAAA
83281842 TTGAAA
1 TTGAAA
83281848 TTACCTCAGC
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
90 44 0.53
91 10 0.12
92 22 0.27
93 7 0.08
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (88 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAGAG
TTGATTTTTTTGAACAACAGAAA
Found at i:83281876 original size:166 final size:166
Alignment explanation
Indices: 83281602--83281923 Score: 463
Period size: 167 Copynumber: 1.9 Consensus size: 166
83281592 ATAAATTGAA
* * * *
83281602 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
*
83281667 AGACAGAAATTGAAAATAGCTCAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATA-GAGTTGA
66 AGACAGAAATTGAAAATACCTCAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
**
83281731 TTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
131 --TTTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
* * *
83281769 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTT-AA
1 AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
* * *
83281833 CA-ACAGAAATTGAAATTACCTCAGCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
66 -AGACAGAAATTGAAAATACCTCAGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGAGTT
83281896 GATTTTTTTGAAAAACAGAAATTGAAAA
129 GATTTTTTTGAAAAACAGAAATTGAAAA
83281924 TACCTCAGCA
Statistics
Matches: 139, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
165 26 0.19
166 50 0.36
167 63 0.45
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (166 bp):
AAAATACCTCAGCGTGTGACCTGAAGCTCAACTCACCTCTCACAATACGAGTTGATTTTTTTGAA
AGACAGAAATTGAAAATACCTCAGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGAAAAACAGAAATTGAAAAACGGAAATTG
Found at i:83282015 original size:77 final size:75
Alignment explanation
Indices: 83281752--83282313 Score: 476
Period size: 73 Copynumber: 7.6 Consensus size: 75
83281742 AAGGCAGAAA
* * * * *
83281752 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCACAATAT
83281817 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * *
83281829 TT-AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
83281893 GTTGATTTTT
66 GTTGATTTTT
* **
83281903 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
83281968 GTTGATTTTTTTT
66 GTTGA---TTTTT
* * ** *
83281981 TTGAAAAA-AGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCT-GCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
*
83282044 GCTGA---TT
66 GTTGATTTTT
** ** * ** ** * * * * * *** *
83282051 TTGAAAAGTAGAAATT--AAA-AGGTCAAC-TCACCT--CTCGCAATATGA-GT-TGATTTTTTG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA-CTCACCTCTCACAATATG
**** ***
83282108 ACAACA-TAAA
65 AGTTGATTTTT
* *
83282118 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
83282182 GTTGA-TTTT
66 GTTGATTTTT
* **
83282191 TTG-AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
83282255 GTTGATTTTTTTT
66 GTTGA---TTTTT
*
83282268 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAA
83282314 AATTTCTCGC
Statistics
Matches: 391, Mismatches: 72, Indels: 43
0.77 0.14 0.08
Matches are distributed among these distances:
64 1 0.00
65 10 0.03
66 12 0.03
67 6 0.02
68 8 0.02
69 8 0.02
70 13 0.03
71 9 0.02
72 5 0.01
73 71 0.18
74 40 0.10
75 60 0.15
76 39 0.10
77 54 0.14
78 55 0.14
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTTT
Found at i:83282040 original size:151 final size:148
Alignment explanation
Indices: 83281752--83282339 Score: 541
Period size: 151 Copynumber: 4.0 Consensus size: 148
83281742 AAGGCAGAAA
* * * * *** *
83281752 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCACAATAT
* * * *
83281817 GAGTTGATTTTTTT-AACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
64 GAGTTGATTTTTTTGAA-AAAAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
*
83281881 CTCGCAATATGAGTTGATTTTT
128 CTCGCAATATGAGCTGA-TTTT
83281903 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
* **
83281968 GTTGATTTTTTTTTTGAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTT
66 GTTGA---TTTTTTTGAAAAAAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCT
83282033 CT-GCAATATGAGCTGA--TT
128 CTCGCAATATGAGCTGATTTT
** * * * *** * ** * * *
83282051 TTGAAAAGTAGAAATT-AAAAGGTCAACTCA-C--CTCTCGCAATATGAGTTGATTTTTTGACAA
1 TTGAAAAACAGAAATTGAAAA--T-ACCTCAGCATGTCTTG-AGGCTCAACTCA-TTTCTCACAA
* * * * *
83282112 CAT-A----A----ATTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
61 TATGAGTTGATTTTTTTGAAAAAAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAAC
*
83282168 CTCTCGCAATATGAGTTGATTTT
126 CTCTCGCAATATGAGCTGATTTT
83282191 TTG-AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
* **
83282255 GTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA--AATT
66 GTTGA---TTTTTTTGAAAAA-AGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACC
83282318 TCTCGCAATATGAGCTGATTTT
127 TCTCGCAATATGAGCTGATTTT
83282340 GAAAAAGTAG
Statistics
Matches: 346, Mismatches: 62, Indels: 60
0.74 0.13 0.13
Matches are distributed among these distances:
137 53 0.15
138 25 0.07
139 16 0.05
140 13 0.04
143 1 0.00
144 1 0.00
147 8 0.02
148 22 0.06
149 65 0.19
150 12 0.03
151 79 0.23
152 49 0.14
153 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (148 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
GTTGATTTTTTTGAAAAAAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
GCAATATGAGCTGATTTT
Found at i:83282299 original size:78 final size:77
Alignment explanation
Indices: 83282118--83282339 Score: 330
Period size: 73 Copynumber: 2.9 Consensus size: 77
83282108 ACAACATAAA
* * **
83282118 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
83282183 TTGA----TTTT
66 TTGATTTTTTTT
*
83282191 TTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
83282256 TTGATTTTTTTT
66 TTGATTTTTTTT
*
83282268 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA--AATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
*
83282331 GCTGATTTT
65 GTTGATTTT
83282340 GAAAAAGTAG
Statistics
Matches: 136, Mismatches: 8, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
73 64 0.47
76 23 0.17
77 7 0.05
78 42 0.31
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32
Consensus pattern (77 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
TTGATTTTTTTT
Found at i:83282382 original size:289 final size:290
Alignment explanation
Indices: 83281834--83282758 Score: 1319
Period size: 289 Copynumber: 3.2 Consensus size: 290
83281824 TTTTTTTAAC
* * *
83281834 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-
83281899 TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAT
65 TTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAT
83281964 ATGAGTTGATTTTTTTTTTGAAAAA-AGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACT
129 ATGAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAAC-
*
83282028 AATTTCT-GCAATATGAGCTGATTTTG-AAAAGTAGAAATTAAAAGG-TCAACTCACCTCTCGCA
193 AATTTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCA
83282090 ATATGAGTTGATTTTTTG-ACAACATAAATTGAA
258 ATATGAGTTGA-TTTTTGAACAACATAAATTGAA
* *
83282123 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
83282188 TTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATAT
66 TTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATAT
83282253 GAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA-AAT
131 GAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACAAT
83282317 TTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATA
196 TTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATA
*
83282382 TGAGTTGATTCTTGAACAACATAAATTGAA
261 TGAGTTGATTTTTGAACAACATAAATTGAA
83282412 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
* * * * * *
83282476 -TTTTGAAAA-AG---TAG-AAAT---T-A--A------AAGGTTCAACCCACTTCTCGCAATAT
66 TTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATAT
*** * * * *
83282523 GAGTTGATTCTTGAACAACGTAAATTG-AAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGG
131 GAGTTGATT-TT--------TTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGG
* **
83282587 CTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACC
187 CTCAAC-AATTTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACC
*
83282652 TCTCGCAATATGAGTTGA-TTTTGAACAACGTAAATTGAA
251 TCTCGCAATATGAGTTGATTTTTGAACAACATAAATTGAA
83282691 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
83282756 TTT
66 TTT
83282759 GAAAAAGTAG
Statistics
Matches: 595, Mismatches: 23, Indels: 44
0.90 0.03 0.07
Matches are distributed among these distances:
270 30 0.05
271 2 0.00
276 1 0.00
278 39 0.07
279 88 0.15
280 73 0.12
281 2 0.00
282 4 0.01
283 2 0.00
286 9 0.02
287 110 0.18
288 68 0.11
289 167 0.28
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (290 bp):
AACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATAT
GAGTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACAAT
TTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATA
TGAGTTGATTTTTGAACAACATAAATTGAA
Found at i:83282420 original size:13 final size:13
Alignment explanation
Indices: 83282393--83282426 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
83282383 GAGTTGATTC
*
83282393 TTGAACAACATAAA
1 TTGAA-AACAGAAA
83282407 TTGAAAACAGAAA
1 TTGAAAACAGAAA
83282420 TTGAAAA
1 TTGAAAA
83282427 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:83282522 original size:140 final size:140
Alignment explanation
Indices: 83281981--83282890 Score: 1182
Period size: 140 Copynumber: 6.5 Consensus size: 140
83281971 GATTTTTTTT
* * * * * **
83281981 TTGAAAAAAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCT-GCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
83282045 CTGATTTTG-AAAAGTAGAAATTAAAAGG-TCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA-TTCTTG
83282108 -ACAACATAAA
130 AACAACATAAA
*
83282118 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * ** * ** * *** * ** *
83282183 TTGATTTTTTG-AAAA-CAGAAATTGAAAA--TACCTCAGCATGTCTTG-AGGCTCAACTCATT-
66 CTGA--TTTTGAAAAAGTAGAAATT-AAAAGGTTCAAC-CCACCTCTCGCAATATGAGTTGATTC
* * *
83282242 TCT-CACAATATGAGTTGATTTTTTTT
127 T-TGAACAACAT-A----A-------A
* * * * **
83282268 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA--AATTTCTCGCAATATGA
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
83282331 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
65 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
83282396 AACAACATAAA
130 AACAACATAAA
83282407 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
83282472 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
83282537 ACAACGTAAA
131 ACAACATAAA
*
83282547 TTGAAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
83282612 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT-TTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
83282676 ACAACGTAAA
131 ACAACATAAA
83282686 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
83282751 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
66 CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
*
83282816 ACAACGTAAA
131 ACAACATAAA
*
83282826 TTGAAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
83282891 TTGAAATTAA
Statistics
Matches: 682, Mismatches: 60, Indels: 59
0.85 0.07 0.07
Matches are distributed among these distances:
137 49 0.07
138 61 0.09
139 156 0.23
140 308 0.45
143 1 0.00
146 1 0.00
147 5 0.01
148 8 0.01
149 31 0.05
150 15 0.02
151 47 0.07
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (140 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGA
ACAACATAAA
Found at i:83282548 original size:54 final size:54
Alignment explanation
Indices: 83282448--83282553 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 54
83282438 GACCTGAGGC
*
83282448 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* * *
83282502 TCAACCCACTTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
83282554 CAGAAATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
54 32 0.71
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:83282739 original size:279 final size:280
Alignment explanation
Indices: 83282272--83282890 Score: 1127
Period size: 279 Copynumber: 2.2 Consensus size: 280
83282262 TTTTTTTTGA
* * * * **
83282272 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAA--AATTTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
83282335 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
66 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
83282400 ACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
131 ACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
*
83282465 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACTTCTCGCAATATGAGTTGA
196 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
83282530 TTCTTGAACAACGTAAATTG
261 TTCTTGAACAACGTAAATTG
*
83282550 AAAACAGAAATTGAAAATACCTTAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
83282615 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATT-TTGAACA
66 ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
*
83282679 ACGTAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
131 ACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
83282744 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
196 ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
83282809 TTCTTGAACAACGTAAATTG
261 TTCTTGAACAACGTAAATTG
*
83282829 AAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
83282891 TTGAAATTAA
Statistics
Matches: 328, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
278 38 0.12
279 215 0.66
280 75 0.23
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.26
Consensus pattern (280 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
ATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACA
ACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCA
ATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGA
TTCTTGAACAACGTAAATTG
Found at i:83282827 original size:54 final size:54
Alignment explanation
Indices: 83282727--83282832 Score: 144
Period size: 54 Copynumber: 1.9 Consensus size: 54
83282717 GACCTGAGGC
*
83282727 TCAACTCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTA-AAATTGAAAAGGT
* *
83282781 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAACGT-AAATTGAAAA
1 TCAACCCACCTCTCGCAATATGAGCTGATT-TTGAA-AAAGTAAAATTGAAAA
83282833 TAGAAATTGA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
54 33 0.72
55 9 0.20
56 4 0.09
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (54 bp):
TCAACCCACCTCTCGCAATATGAGCTGATTTTGAAAAAGTAAAATTGAAAAGGT
Found at i:83282841 original size:13 final size:13
Alignment explanation
Indices: 83282823--83282847 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83282813 TGAACAACGT
83282823 AAATTGAAAATAG
1 AAATTGAAAATAG
83282836 AAATTGAAAATA
1 AAATTGAAAATA
83282848 CCTCAGCGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATTGAAAATAG
Found at i:83282953 original size:72 final size:72
Alignment explanation
Indices: 83282823--83282988 Score: 248
Period size: 72 Copynumber: 2.3 Consensus size: 72
83282813 TGAACAACGT
* * *
83282823 AAATTG-AAAATAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATA
1 AAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
83282887 TGAGTTG
66 TGAGTTG
*
83282894 AAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAAT
1 AAATTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAAT
83282958 ATGAGTTG
65 ATGAGTTG
**
83282966 ATTTTGAAAAACAAAAATT-AAAA
1 AAATTGAAAAACAAAAATTGAAAA
83282989 GGCTTAACTC
Statistics
Matches: 86, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (72 bp):
AAATTGAAAAACAAAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTG
Done.