Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 277 of 325
Found at i:85947672 original size:30 final size:31
Alignment explanation
Indices: 85947632--85947709 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 31
85947622 TTTTATTTAT
*
85947632 TATATTTACTTATTATAATATATA-ATATAA
1 TATATATACTTATTATAATATATAGATATAA
85947662 TATATATACTTA--ATAAT-TA-AGATATAA
1 TATATATACTTATTATAATATATAGATATAA
*
85947689 TAT-TATA-ATATTATAATATAT
1 TATATATACTTATTATAATATAT
85947710 TTTTAACTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
25 2 0.05
26 5 0.12
27 16 0.39
28 7 0.17
30 11 0.27
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (31 bp):
TATATATACTTATTATAATATATAGATATAA
Found at i:85950293 original size:11 final size:11
Alignment explanation
Indices: 85950277--85950301 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
85950267 ACCACCTTAG
85950277 AAGATTTGATA
1 AAGATTTGATA
85950288 AAGATTTGATA
1 AAGATTTGATA
85950299 AAG
1 AAG
85950302 CTCAGGTACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (11 bp):
AAGATTTGATA
Found at i:85950371 original size:13 final size:13
Alignment explanation
Indices: 85950355--85950381 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
85950345 TTTATTCTTT
85950355 ACTCACATCATGG
1 ACTCACATCATGG
85950368 ACTCACATCATGG
1 ACTCACATCATGG
85950381 A
1 A
85950382 TGTGAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (13 bp):
ACTCACATCATGG
Found at i:85951065 original size:25 final size:25
Alignment explanation
Indices: 85951027--85951076 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
85951017 TTTAAGAAAC
*
85951027 CGTTCAAGATTTTAGAAAAATCTTA
1 CGTTCAAGACTTTAGAAAAATCTTA
85951052 CGTTCAAGACTTTAGAAAAATCTTA
1 CGTTCAAGACTTTAGAAAAATCTTA
85951077 GTTTTAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (25 bp):
CGTTCAAGACTTTAGAAAAATCTTA
Found at i:85953160 original size:19 final size:18
Alignment explanation
Indices: 85953136--85953173 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
85953126 ATGTTTTAAT
85953136 TAAATAAATATAAAATTTA
1 TAAATAAATA-AAAATTTA
*
85953155 TAAATAAATAAAATTTTA
1 TAAATAAATAAAAATTTA
85953173 T
1 T
85953174 TTTAAATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAATAAATAAAAATTTA
Found at i:85953514 original size:22 final size:20
Alignment explanation
Indices: 85953478--85953534 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 20
85953468 ATCAGCAATT
* *
85953478 TTTTTCATTAATATTTTTATGG
1 TTTTT-ATTATTATTTTTAT-A
85953500 TTATTTATTATTA-TTTTATA
1 TT-TTTATTATTATTTTTATA
85953520 TTTTTATTATTATTT
1 TTTTTATTATTATTT
85953535 AATTTTAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
19 10 0.32
20 4 0.13
21 6 0.19
22 8 0.26
23 3 0.10
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.70
Consensus pattern (20 bp):
TTTTTATTATTATTTTTATA
Found at i:85953541 original size:16 final size:18
Alignment explanation
Indices: 85953503--85953540 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
85953493 TTTATGGTTA
85953503 TTTATTATTATTTTATATT
1 TTTATTATTA-TTTATATT
85953522 TTTATTATTATTTA-ATT
1 TTTATTATTATTTATATT
85953539 TT
1 TT
85953541 AATAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 4 0.21
19 10 0.53
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTATTATTATTTATATT
Found at i:85954894 original size:14 final size:14
Alignment explanation
Indices: 85954875--85954901 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
85954865 TAATATTTCT
85954875 AAATAAATCATCTC
1 AAATAAATCATCTC
85954889 AAATAAATCATCT
1 AAATAAATCATCT
85954902 TTACTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATAAATCATCTC
Found at i:85956378 original size:26 final size:26
Alignment explanation
Indices: 85956349--85956399 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
85956339 TTGCAGTGGC
* * *
85956349 TGATTTGATCAATTCATTCTATTAAT
1 TGATTTGACCAACTAATTCTATTAAT
85956375 TGATTTGACCAACTAATTCTATTAA
1 TGATTTGACCAACTAATTCTATTAA
85956400 CTGTTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.14, G:0.08, T:0.45
Consensus pattern (26 bp):
TGATTTGACCAACTAATTCTATTAAT
Found at i:85962802 original size:38 final size:38
Alignment explanation
Indices: 85962747--85962822 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
85962737 GCTTAAGAAT
85962747 CTAGTGAAGGTTCGAGTAATCGAGGCAAATGACCAGTA
1 CTAGTGAAGGTTCGAGTAATCGAGGCAAATGACCAGTA
*
85962785 CTAGTGATGG-TCTGAGTAATCGAGGCAAATGACCAGTA
1 CTAGTGAAGGTTC-GAGTAATCGAGGCAAATGACCAGTA
85962823 GAGTAGATTC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 2 0.06
38 34 0.94
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (38 bp):
CTAGTGAAGGTTCGAGTAATCGAGGCAAATGACCAGTA
Found at i:85963980 original size:22 final size:22
Alignment explanation
Indices: 85963945--85963988 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
85963935 ACAACTACTT
85963945 TAATTGCATTATTTAAGTATTA
1 TAATTGCATTATTTAAGTATTA
*
85963967 TAATT-CATTAATTTAATTATTA
1 TAATTGCATT-ATTTAAGTATTA
85963989 ACTTAGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.52
Consensus pattern (22 bp):
TAATTGCATTATTTAAGTATTA
Found at i:85964842 original size:2 final size:2
Alignment explanation
Indices: 85964835--85964878 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
85964825 ATTTGGAGGA
85964835 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
85964877 AT
1 AT
85964879 TATGATATTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:85965916 original size:3 final size:3
Alignment explanation
Indices: 85965908--85965943 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
85965898 TCATTCTTAA
85965908 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85965944 TGAGGCATGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:85967242 original size:14 final size:15
Alignment explanation
Indices: 85967214--85967242 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
85967204 TACATATTAA
85967214 TAAAATTTATTAAAT
1 TAAAATTTATTAAAT
85967229 TAAAATTT-TTAAAT
1 TAAAATTTATTAAAT
85967243 ATACTGAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAAAATTTATTAAAT
Found at i:85987935 original size:25 final size:25
Alignment explanation
Indices: 85987901--85987950 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
85987891 ACAACACTTT
85987901 GCCATTCTAGGAGTATTTAGGATGC
1 GCCATTCTAGGAGTATTTAGGATGC
85987926 GCCATTCTAGGAGTATTTAGGATGC
1 GCCATTCTAGGAGTATTTAGGATGC
85987951 AGGTTAAGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (25 bp):
GCCATTCTAGGAGTATTTAGGATGC
Found at i:85992540 original size:28 final size:29
Alignment explanation
Indices: 85992509--85992569 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 29
85992499 TAAAAGGTAA
*
85992509 AATCATTATA-TT-GTTCATGTAGTTAAAT
1 AATCATTATACTTCGTTCA-CTAGTTAAAT
*
85992537 AATC-TTATACTTCGTTTACTAGTTAAAT
1 AATCATTATACTTCGTTCACTAGTTAAAT
85992565 AATCA
1 AATCA
85992570 GTCCATCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
27 5 0.18
28 19 0.68
29 4 0.14
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.44
Consensus pattern (29 bp):
AATCATTATACTTCGTTCACTAGTTAAAT
Found at i:85994340 original size:25 final size:25
Alignment explanation
Indices: 85994294--85994342 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
85994284 TATGGGATCG
*
85994294 CATGATGTGGATTCGTACCACCATT
1 CATGATGTGGATTCGCACCACCATT
* * *
85994319 CATGATGTGGGTTTGCATCACCAT
1 CATGATGTGGATTCGCACCACCAT
85994343 GTAGATGAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.33
Consensus pattern (25 bp):
CATGATGTGGATTCGCACCACCATT
Found at i:85996511 original size:43 final size:43
Alignment explanation
Indices: 85996455--85996589 Score: 130
Period size: 43 Copynumber: 3.1 Consensus size: 43
85996445 CTCACATGTT
*
85996455 ATCAC-ATATCGATGCCACTGTCCCAGACAGGGTCTTACACGAA
1 ATCACAATA-CGATGCCACTGTCCCAGACATGGTCTTACACGAA
* * * * * *
85996498 ATC-GATTAACGATGCCACTGTACTAGACATGGTTTTACACGTA
1 ATCACAAT-ACGATGCCACTGTCCCAGACATGGTCTTACACGAA
* * * * *
85996541 ATCACAATACAATGCCAATTTCCCAGACATGGTCTTACATGTA
1 ATCACAATACGATGCCACTGTCCCAGACATGGTCTTACACGAA
85996584 ATCACA
1 ATCACA
85996590 TCTCTGTAAC
Statistics
Matches: 73, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
43 70 0.96
44 3 0.04
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
ATCACAATACGATGCCACTGTCCCAGACATGGTCTTACACGAA
Found at i:86015364 original size:37 final size:37
Alignment explanation
Indices: 86015323--86015397 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
86015313 AGTAAAAGTT
86015323 ATTTATTACACCTTAAACATAGAATATCTTCCATCAA
1 ATTTATTACACCTTAAACATAGAATATCTTCCATCAA
*
86015360 ATTTATTACACCTTAAACATATAATATCTTCCATCAA
1 ATTTATTACACCTTAAACATAGAATATCTTCCATCAA
86015397 A
1 A
86015398 CATCAAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.36
Consensus pattern (37 bp):
ATTTATTACACCTTAAACATAGAATATCTTCCATCAA
Found at i:86018968 original size:42 final size:42
Alignment explanation
Indices: 86018918--86019002 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
86018908 TTGTATACAT
*
86018918 TGAATGAATATGATTGGTAAGTTAAATTCTTGTTATACGAAC
1 TGAATGAATACGATTGGTAAGTTAAATTCTTGTTATACGAAC
86018960 TGAATGAATACGATTGGTAAGTTAAATTCTTGTTATACGAAC
1 TGAATGAATACGATTGGTAAGTTAAATTCTTGTTATACGAAC
86019002 T
1 T
86019003 TATTCAGCAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (42 bp):
TGAATGAATACGATTGGTAAGTTAAATTCTTGTTATACGAAC
Found at i:86019419 original size:21 final size:23
Alignment explanation
Indices: 86019395--86019436 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
86019385 ACTTGATTTA
*
86019395 AATGT-CTTGAAT-TGGTTGGCG
1 AATGTGCTTAAATGTGGTTGGCG
86019416 AATGTGCTTAAATGTGGTTGG
1 AATGTGCTTAAATGTGGTTGG
86019437 AGGTGGAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 6 0.33
23 7 0.39
ACGTcount: A:0.21, C:0.07, G:0.33, T:0.38
Consensus pattern (23 bp):
AATGTGCTTAAATGTGGTTGGCG
Found at i:86020120 original size:25 final size:25
Alignment explanation
Indices: 86020060--86020108 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
86020050 ACAGCCCTCT
*
86020060 CGAGCTTCCCATTATATAGTTCTTG
1 CGAGCTTCCCGTTATATAGTTCTTG
86020085 CGAGCTTCCCGTTATATAGTTCTT
1 CGAGCTTCCCGTTATATAGTTCTT
86020109 CGGAGTATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.24, G:0.16, T:0.41
Consensus pattern (25 bp):
CGAGCTTCCCGTTATATAGTTCTTG
Found at i:86024924 original size:42 final size:42
Alignment explanation
Indices: 86024820--86024929 Score: 134
Period size: 44 Copynumber: 2.6 Consensus size: 42
86024810 AGGTGTAAGA
** *
86024820 TCGTGTAAGACCACATCTGGGACATTGGCATCGACTTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCGACTT-AGATT
86024863 TACGTGTAAGACCATGTCTGGGACATCGGCATCG--TATATGATT
1 T-CGTGTAAGACCATGTCTGGGACATCGGCATCGACT-TA-GATT
*
86024906 TCGTGTAAGACCTTGTCTGGGACA
1 TCGTGTAAGACCATGTCTGGGACA
86024930 GTGTCATTGA
Statistics
Matches: 60, Mismatches: 4, Indels: 7
0.85 0.06 0.10
Matches are distributed among these distances:
42 24 0.40
43 7 0.12
44 29 0.48
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGACTTAGATT
Found at i:86024981 original size:43 final size:42
Alignment explanation
Indices: 86024869--86024983 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 42
86024859 GATTTACGTG
* * * * *
86024869 TAAGACCATGTCTGGGACA-TCGGCATCGTATATGATTTCGTG
1 TAAGACCATGTCTGGGA-AGTTGGCATTGTATATGATTACATA
* * *
86024911 TAAGACCTTGTCTGGGACAG-TGTCATTGATATTTGATTACATA
1 TAAGACCATGTCTGGGA-AGTTGGCATTG-TATATGATTACATA
*
86024954 TAAGACCATGTCTGGGATGTTGGCATTGTA
1 TAAGACCATGTCTGGGAAGTTGGCATTGTA
86024984 CAAGCTTTCT
Statistics
Matches: 59, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 26 0.44
43 33 0.56
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
TAAGACCATGTCTGGGAAGTTGGCATTGTATATGATTACATA
Found at i:86025789 original size:20 final size:20
Alignment explanation
Indices: 86025764--86025803 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
86025754 TGAAATGGTA
*
86025764 ATGTATGGAT-GATATGATTT
1 ATGTATGAATGGATAT-ATTT
86025784 ATGTATGAATGGATATATTT
1 ATGTATGAATGGATATATTT
86025804 GGCTACTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.45
Consensus pattern (20 bp):
ATGTATGAATGGATATATTT
Found at i:86031785 original size:40 final size:39
Alignment explanation
Indices: 86031702--86031885 Score: 156
Period size: 40 Copynumber: 4.6 Consensus size: 39
86031692 AAATTGAATG
* * * * *
86031702 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGAA-AATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC--AAGTAGT
* *
86031742 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAG-T
* *
86031782 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCAAGTAG-T
* * * *
86031822 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
* * *
86031861 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
86031886 CTTGGTGCGG
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
38 1 0.01
39 5 0.04
40 110 0.93
41 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTAGT
Found at i:86046714 original size:16 final size:15
Alignment explanation
Indices: 86046678--86046719 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
86046668 GGGTGAGGGG
86046678 TGTTACATCT-AACCA
1 TGTTA-ATCTAAACCA
*
86046693 TTTTAATCTAAATCCA
1 TGTTAATCTAAA-CCA
86046709 TGTTAATCTAA
1 TGTTAATCTAA
86046720 CATGCAAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 4 0.17
15 6 0.26
16 13 0.57
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (15 bp):
TGTTAATCTAAACCA
Found at i:86047438 original size:82 final size:81
Alignment explanation
Indices: 86047262--86047514 Score: 294
Period size: 82 Copynumber: 3.1 Consensus size: 81
86047252 ACAAAAATTG
* *** *
86047262 TAAAACACAGAGCAATAGCGGCG-TTTTAACAAAAACGCCGCTAAAAACT-GAGCAATAGCGGCG
1 TAAAA-ACAGAGCATTAGCGGCGCTTTT-GGTAAAACGCCGCTAAAAACTAGAGCATTAGCGGC-
** * *
86047325 TTTTTTTGTTAAAACGCCGT
63 -ACTTTTGGTAAAACGCCGC
* * *
86047345 TAAAAATAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACTAGAGCATTAGTGGCACT
1 TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACTAGAGCATTAGCGGCACT
86047410 TTTGGTAAAACGCCGC
66 TTTGGTAAAACGCCGC
*
86047426 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAAACTAGAGCATTAGCGGC
1 TAAA-AACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCT--AAAAACTAGAGCATTAGCGGC
* *
86047491 GCTTTTGGTAAAACGCCAC
63 ACTTTTGGTAAAACGCCGC
86047510 TAAAA
1 TAAAA
86047515 GTTTTGTAAC
Statistics
Matches: 147, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
81 19 0.13
82 67 0.46
83 21 0.14
84 40 0.27
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (81 bp):
TAAAAACAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAACTAGAGCATTAGCGGCACT
TTTGGTAAAACGCCGC
Found at i:86047495 original size:43 final size:41
Alignment explanation
Indices: 86047293--86047514 Score: 304
Period size: 41 Copynumber: 5.4 Consensus size: 41
86047283 CGTTTTAACA
* * *
86047293 AAAACGCCGCTAAAAACT-GAGCAATAGCGGCGTTTTTTTGTT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCG--CTTTTGGT
*
86047335 AAAACGCCGTTAAAAA-TAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
* * *
86047375 AAAACGCCGCTAAAGACTAGAGCATTAGTGGCACTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
* *
86047416 AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
86047457 AAAACGCCGCTAAAAAAACTAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCT--AAAAACTAGAGCATTAGCGGCGCTTTTGGT
*
86047500 AAAACGCCACTAAAA
1 AAAACGCCGCTAAAA
86047515 GTTTTGTAAC
Statistics
Matches: 162, Mismatches: 14, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
40 20 0.12
41 76 0.47
42 28 0.17
43 38 0.23
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTTGGT
Found at i:86048562 original size:18 final size:19
Alignment explanation
Indices: 86048539--86048577 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
86048529 AGATCTTTTT
86048539 TATTTTT-TATCAAAATAA
1 TATTTTTATATCAAAATAA
*
86048557 TATTTTTATATGAAAATAA
1 TATTTTTATATCAAAATAA
86048576 TA
1 TA
86048578 AATATGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (19 bp):
TATTTTTATATCAAAATAA
Found at i:86049425 original size:2 final size:2
Alignment explanation
Indices: 86049418--86049444 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86049408 TAAGCAGTGC
86049418 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
86049445 GAATGTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86053975 original size:15 final size:15
Alignment explanation
Indices: 86053955--86053988 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
86053945 TAATTTGATG
*
86053955 TTTGGATGTTCCATT
1 TTTGGATGTACCATT
86053970 TTTGGATGTACCATT
1 TTTGGATGTACCATT
86053985 TTTG
1 TTTG
86053989 TTCATCCGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.12, G:0.21, T:0.53
Consensus pattern (15 bp):
TTTGGATGTACCATT
Found at i:86055333 original size:42 final size:42
Alignment explanation
Indices: 86055204--86055352 Score: 183
Period size: 43 Copynumber: 3.5 Consensus size: 42
86055194 TTTTTGAATT
* *
86055204 TCATGA-CTTTTAGCGGCGTTTTTGAGAAAAGCCCCGCTAAAGG
1 TCATGATC-TTTAGCGGCATTTGTG-GAAAAGCCCCGCTAAAGG
* * *
86055247 TCGTGATCTTTAGTGGCGTTTGTAGGAAAAGCCCCGCTAAAGG
1 TCATGATCTTTAGCGGCATTTGT-GGAAAAGCCCCGCTAAAGG
* * * *
86055290 TCTTGATCTTTAGCGGCATTTGTGGGAAAGCGCCACTAAAGG
1 TCATGATCTTTAGCGGCATTTGTGGAAAAGCCCCGCTAAAGG
86055332 TCATGATCTTTAGCGGCATTT
1 TCATGATCTTTAGCGGCATTT
86055353 TTTTCAAATA
Statistics
Matches: 94, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
42 36 0.38
43 56 0.60
44 2 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (42 bp):
TCATGATCTTTAGCGGCATTTGTGGAAAAGCCCCGCTAAAGG
Found at i:86056814 original size:26 final size:26
Alignment explanation
Indices: 86056768--86056843 Score: 118
Period size: 26 Copynumber: 3.0 Consensus size: 26
86056758 TTTCTCATCC
* *
86056768 CAATTTTATCC-TAGTAAAATTTTGA
1 CAATTTTACCCTTGGTAAAATTTTGA
86056793 CAATTTTACCCTTGGTAAAATTTTGA
1 CAATTTTACCCTTGGTAAAATTTTGA
*
86056819 CACTTTTACCCTTGGTAAAATTTTG
1 CAATTTTACCCTTGGTAAAATTTTG
86056844 GTGATTTTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
25 10 0.21
26 37 0.79
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (26 bp):
CAATTTTACCCTTGGTAAAATTTTGA
Found at i:86056851 original size:26 final size:26
Alignment explanation
Indices: 86056781--86056867 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 26
86056771 TTTTATCCTA
86056781 GTAAAATTTT-GACAATTTTACCCTTG
1 GTAAAATTTTGGA-AATTTTACCCTTG
*
86056807 GTAAAATTTT-GACACTTTTACCCTTG
1 GTAAAATTTTGGA-AATTTTACCCTTG
** * **
86056833 GTAAAATTTTGGTGATTTTATCCTCA
1 GTAAAATTTTGGAAATTTTACCCTTG
86056859 GTAAAATTT
1 GTAAAATTT
86056868 CTAGAAAAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
26 52 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.13, T:0.44
Consensus pattern (26 bp):
GTAAAATTTTGGAAATTTTACCCTTG
Found at i:86058671 original size:21 final size:21
Alignment explanation
Indices: 86058647--86058688 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
86058637 AAGAGATAGT
86058647 GTTGAAATACATTTCTACATG
1 GTTGAAATACATTTCTACATG
86058668 GTTGAAATACATTTCTACATG
1 GTTGAAATACATTTCTACATG
86058689 TTAAAACTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (21 bp):
GTTGAAATACATTTCTACATG
Found at i:86065826 original size:26 final size:26
Alignment explanation
Indices: 86065797--86065904 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
86065787 TGGTACAAAT
86065797 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
86065823 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86065849 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86065875 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86065901 TGAT
1 TGAT
86065905 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86070225 original size:29 final size:29
Alignment explanation
Indices: 86070186--86070264 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
86070176 CTTAATAATC
*
86070186 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
* *
86070216 AACTCGCACACTTAATGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
86070245 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
86070265 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:86070922 original size:2 final size:2
Alignment explanation
Indices: 86070904--86070945 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
86070894 TGATGGCCGA
* *
86070904 AT AT GT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86070946 CAACTATACT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86075659 original size:49 final size:49
Alignment explanation
Indices: 86075587--86075761 Score: 233
Period size: 49 Copynumber: 3.5 Consensus size: 49
86075577 TGAGGTCACG
*
86075587 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
86075636 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTTTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA--TTGGTCGCA
* * *
86075687 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
86075736 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
86075762 TACGTACCTG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 67 0.63
51 40 0.37
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:86075755 original size:100 final size:100
Alignment explanation
Indices: 86075582--86075772 Score: 337
Period size: 100 Copynumber: 1.9 Consensus size: 100
86075572 TACTGTGAGG
* *
86075582 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
*
86075647 AAGTGCAGGCTACTATGCGTACCTGAAAACTTTGA
66 AAGTGCAGGCTACTATACGTACCTGAAAACTTTGA
* *
86075682 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTATTGGTTGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
86075747 AAGTGCAGGCTACTATACGTACCTGA
66 AAGTGCAGGCTACTATACGTACCTGA
86075773 TAGCTTCGGC
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 86 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATACGTACCTGAAAACTTTGA
Found at i:86081833 original size:50 final size:49
Alignment explanation
Indices: 86081767--86081865 Score: 180
Period size: 50 Copynumber: 2.0 Consensus size: 49
86081757 TGGCCATGTG
86081767 GGCCACACGGGCTAGGCCAAATTAGGCATGTGGGCCACACAGGTGTGTT
1 GGCCACACGGGCTAGGCCAAATTAGGCATGTGGGCCACACAGGTGTGTT
*
86081816 GGCCTACACGGGCTAGGCCAAATTAGTCATGTGGGCCACACAGGTGTGTT
1 GGCC-ACACGGGCTAGGCCAAATTAGGCATGTGGGCCACACAGGTGTGTT
86081866 AGCCCACATG
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 4 0.08
50 44 0.92
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.20
Consensus pattern (49 bp):
GGCCACACGGGCTAGGCCAAATTAGGCATGTGGGCCACACAGGTGTGTT
Found at i:86085198 original size:37 final size:37
Alignment explanation
Indices: 86085148--86085221 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
86085138 GATCGATGTC
*
86085148 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
86085185 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
86085222 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:86089076 original size:27 final size:26
Alignment explanation
Indices: 86089030--86089158 Score: 152
Period size: 27 Copynumber: 4.8 Consensus size: 26
86089020 AAGCGTCCTA
*
86089030 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAA-TATCTGATCTG
*
86089057 GTGGCTCTGCTACATATATCTG-TCCTG
1 GTGGCTCTGCCACA-ATATCTGAT-CTG
* *
86089084 GTGGCTATGCCGCAATTATCTGATCTG
1 GTGGCTCTGCCACAA-TATCTGATCTG
*
86089111 GTGGCTCTGCCACATATATCTGTTCTG
1 GTGGCTCTGCCACA-ATATCTGATCTG
*
86089138 GTGGCTCTCCCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
86089159 GCAGCCTCGC
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
26 9 0.10
27 76 0.86
28 3 0.03
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGATCTG
Found at i:86089106 original size:54 final size:54
Alignment explanation
Indices: 86089024--86089158 Score: 209
Period size: 54 Copynumber: 2.5 Consensus size: 54
86089014 TGGAGGAAGC
* *
86089024 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCTACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
86089078 GTCCTGGTGGCTATGCCGCAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
86089132 GTTCTGGTGGCTCTCCCACAA-TATCTG
1 GTCCTGGTGGCTATGCCACAATTATCTG
86089159 GCAGCCTCGC
Statistics
Matches: 74, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
53 6 0.08
54 68 0.92
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:86090306 original size:15 final size:15
Alignment explanation
Indices: 86090283--86090325 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
86090273 ATTATGACAT
86090283 TGTATCTTGGATTTC
1 TGTATCTTGGATTTC
* *
86090298 TGTACCTTGGATATC
1 TGTATCTTGGATTTC
*
86090313 TTTATCTTGGATT
1 TGTATCTTGGATT
86090326 CCTCTGTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.16, C:0.14, G:0.19, T:0.51
Consensus pattern (15 bp):
TGTATCTTGGATTTC
Found at i:86090882 original size:2 final size:2
Alignment explanation
Indices: 86090875--86090902 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
86090865 ATGAAAGTGC
86090875 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86090903 CTTAGAAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86094602 original size:37 final size:37
Alignment explanation
Indices: 86094552--86094625 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
86094542 GATCAATGTC
*
86094552 GTTGTGATTAGCCAAATG-TAT-TGGCTTATAATGATTT
1 GTTGTGATTAGCC--ATGAGATGTGGCTTATAATGATTT
86094589 GTTGT-ATGTAGCCATGAGATGTGGCTTATAATGATTT
1 GTTGTGAT-TAGCCATGAGATGTGGCTTATAATGATTT
86094626 TGGCTTGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 3 0.09
36 4 0.12
37 26 0.79
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (37 bp):
GTTGTGATTAGCCATGAGATGTGGCTTATAATGATTT
Found at i:86103900 original size:42 final size:42
Alignment explanation
Indices: 86103837--86103919 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
86103827 GTAGAGTATA
*
86103837 AGGGAATCGATCGATTATTAGTTCGTGGCATCGTCTTTCAAT
1 AGGGAATCGATCGATTATTAGTGCGTGGCATCGTCTTTCAAT
*
86103879 AGGGAATCGATCGATTGTTAGTGCGTGGCATCGTCTTTCAA
1 AGGGAATCGATCGATTATTAGTGCGTGGCATCGTCTTTCAA
86103920 GTCTGTATTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.34
Consensus pattern (42 bp):
AGGGAATCGATCGATTATTAGTGCGTGGCATCGTCTTTCAAT
Found at i:86117863 original size:13 final size:13
Alignment explanation
Indices: 86117845--86117871 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86117835 GGAGCAATCG
86117845 CACACGGGCGTGT
1 CACACGGGCGTGT
86117858 CACACGGGCGTGT
1 CACACGGGCGTGT
86117871 C
1 C
86117872 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:86118250 original size:14 final size:15
Alignment explanation
Indices: 86118231--86118260 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
86118221 ATATTTGACT
86118231 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
86118245 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
86118260 T
1 T
86118261 TTTAGTATCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:86123615 original size:13 final size:13
Alignment explanation
Indices: 86123597--86123633 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
86123587 CTTGACAGGG
86123597 ACACGCCCGTGGC
1 ACACGCCCGTGGC
86123610 ACACGCCCGTGGC
1 ACACGCCCGTGGC
86123623 ACACGCCCGTG
1 ACACGCCCGTG
86123634 TTCAATTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.16, C:0.46, G:0.30, T:0.08
Consensus pattern (13 bp):
ACACGCCCGTGGC
Found at i:86127705 original size:55 final size:55
Alignment explanation
Indices: 86127618--86127758 Score: 192
Period size: 55 Copynumber: 2.6 Consensus size: 55
86127608 GTTCAAGCCC
** ** * *
86127618 CACGCCCGTGTTAATTTAACAGGTTCGACCACAGGTGTTCCACACGGGCATGTCA
1 CACGCCCGTGTTGTTTTGGCAGGCTCGACCACAGGTCTTCCACACGGGCATGTCA
* * **
86127673 CACGCCCGTGTTGTTTTGGCAGGCTCGCCCACAGTTCTTCCACACGGGCATGTTG
1 CACGCCCGTGTTGTTTTGGCAGGCTCGACCACAGGTCTTCCACACGGGCATGTCA
86127728 CACGCCCGTGTTGTTTTGGCAGGCTCGACCA
1 CACGCCCGTGTTGTTTTGGCAGGCTCGACCA
86127759 TGGCCATGTC
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 75 1.00
ACGTcount: A:0.17, C:0.31, G:0.26, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTGTTTTGGCAGGCTCGACCACAGGTCTTCCACACGGGCATGTCA
Found at i:86133174 original size:40 final size:40
Alignment explanation
Indices: 86133129--86133295 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86133119 CGGAATATAA
86133129 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86133169 CCGGATAGAATAACTCGCACGAATGCCTTC-GGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** *
86133208 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
86133248 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86133288 CCGGATAT
1 CCGGATAT
86133296 CATTCAATTT
Statistics
Matches: 107, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 33 0.31
40 74 0.69
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86133214 original size:39 final size:39
Alignment explanation
Indices: 86133145--86133254 Score: 141
Period size: 39 Copynumber: 2.8 Consensus size: 39
86133135 ATAATCACGT
* *
86133145 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
* * *
86133185 GCACGAATGCCTTC-GGTCTTAGCCCGGATATAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
86133224 GCACAATTGCCTTCGGGTCTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
86133255 TAATTTCCAG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.03
39 31 0.50
40 29 0.47
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAACAACTA
Found at i:86133278 original size:79 final size:80
Alignment explanation
Indices: 86133145--86133295 Score: 200
Period size: 79 Copynumber: 1.9 Consensus size: 80
86133135 ATAATCACGT
*
86133145 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTC-GGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
86133209 CGGATATAGCCACTA
66 CGGATATAGCCACTA
* * ** * *
86133224 GCACAATTGCCTTCGGGTCTTAGCCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTC-GCACGAA-TGCCTTCGGGGCTTAG
86133287 CCCGGATAT
64 CCCGGATAT
86133296 CATTCAATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 3 0.05
79 43 0.69
80 16 0.26
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATAACTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATATAGCCACTA
Found at i:86141083 original size:40 final size:40
Alignment explanation
Indices: 86141038--86141204 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
86141028 CGGAATATAA
86141038 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
86141078 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
86141118 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
86141158 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
86141197 CCGGATAT
1 CCGGATAT
86141205 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:86147464 original size:20 final size:20
Alignment explanation
Indices: 86147417--86147464 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
86147407 GTATTAAGAG
86147417 AAATAAATAAAACAAAAACA
1 AAATAAATAAAACAAAAACA
* *
86147437 AAAAAAATAAAATAAAATA-A
1 AAATAAATAAAACAAAA-ACA
86147457 AAATAAAT
1 AAATAAAT
86147465 GGACTCAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 23 0.96
21 1 0.04
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (20 bp):
AAATAAATAAAACAAAAACA
Found at i:86155424 original size:41 final size:40
Alignment explanation
Indices: 86155296--86155515 Score: 242
Period size: 40 Copynumber: 5.5 Consensus size: 40
86155286 GCTCGATTGT
* * * * * * *
86155296 CTTCGGGACATAGCCCGGTTATAGTGATTCGCACAATTGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * * * * *
86155336 CTTCGGGAATTAGCCCGGATTTAGCAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
*
86155376 CTTCGGGACTTAACCCGGTTTTGGTTACTCGCACAAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCAC-AAATGC
* *
86155417 CTTCGGGACTCAACCCGGTTTTGGTAACTCACACAAATGC
1 CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
* * *
86155457 CTTCGGGACTTAACCCGGTTTTGGTCACTTAGCACAAAAGC
1 CTTCGGGACTTAACCCGGTTTTGGTAAC-TCGCACAAATGC
*
86155498 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAACCCGG
86155516 ATACCATTCG
Statistics
Matches: 153, Mismatches: 25, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
40 91 0.59
41 62 0.41
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGTTTTGGTAACTCGCACAAATGC
Found at i:86155456 original size:81 final size:81
Alignment explanation
Indices: 86155296--86155517 Score: 250
Period size: 81 Copynumber: 2.8 Consensus size: 81
86155286 GCTCGATTGT
* * * * * * * * * *
86155296 CTTCGGGACATAGCCCGGTTATAGTGATTCGCAC-AATTGCCTTCGGGAATTAGCCCGGATTTAG
1 CTTCGGGACTTAACCCGGTTTTGGTCACTCGCACAAAATGCCTTCGGGACTCAACCCGGATTTAG
* *
86155360 CAACTCGCACGAATGC
66 CAACTCACACAAATGC
* * *
86155376 CTTCGGGACTTAACCCGGTTTTGGTTACTCGCACAAAATGCCTTCGGGACTCAACCCGGTTTTGG
1 CTTCGGGACTTAACCCGGTTTTGGTCACTCGCACAAAATGCCTTCGGGACTCAACCCGGATTTAG
*
86155441 TAACTCACACAAATGC
66 CAACTCACACAAATGC
* * *
86155457 CTTCGGGACTTAACCCGGTTTTGGTCACTTAGCACAAAA-GCCTTCGGGACTTAGCCCGGAT
1 CTTCGGGACTTAACCCGGTTTTGGTCAC-TCGCACAAAATGCCTTCGGGACTCAACCCGGAT
86155518 ACCATTCGAA
Statistics
Matches: 120, Mismatches: 20, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 28 0.23
81 83 0.69
82 9 0.08
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAACCCGGTTTTGGTCACTCGCACAAAATGCCTTCGGGACTCAACCCGGATTTAG
CAACTCACACAAATGC
Found at i:86159331 original size:21 final size:21
Alignment explanation
Indices: 86159274--86159331 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 21
86159264 ACACGGTCTG
*
86159274 ACCACACAGTCGTGTATCTCA
1 ACCACACAGTCGTGTGTCTCA
* * * *
86159295 ATCACAGAGGCATGTGTCTCA
1 ACCACACAGTCGTGTGTCTCA
* *
86159316 GCCACATAGTCGTGTG
1 ACCACACAGTCGTGTG
86159332 CTTCAGTCAC
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (21 bp):
ACCACACAGTCGTGTGTCTCA
Found at i:86160901 original size:2 final size:2
Alignment explanation
Indices: 86160894--86160922 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
86160884 TGGTATTCGG
86160894 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86160923 AGACAAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:86162306 original size:46 final size:46
Alignment explanation
Indices: 86162256--86162431 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
86162246 TGGTTGAGCA
* *
86162256 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
86162302 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
86162349 TCCGAACTCATTGAGTTGAGACCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
86162395 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
86162432 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 62 0.58
47 27 0.25
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:86162412 original size:93 final size:93
Alignment explanation
Indices: 86162253--86162424 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
86162243 GGATGGTTGA
* * * * * *
86162253 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGACCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
86162318 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
86162346 GCATCCGAACTCATTGAGTTGAGACCGAGTTCACTCATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGACCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
86162411 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
86162425 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGACCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86168070 original size:15 final size:15
Alignment explanation
Indices: 86168050--86168105 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
86168040 GTATCTTGGG
86168050 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
86168065 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
86168080 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
86168095 TTTCTTTATTC
1 TTTCTTTATTC
86168106 AGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86170546 original size:46 final size:46
Alignment explanation
Indices: 86170496--86170668 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
86170486 TTGAGCATCT
*
86170496 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * * * *
86170542 GAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCC
* * *
86170589 GAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * *
86170635 GAGCTCATTGAGTTGAGTCCGAGTTCCCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86170669 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.56
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:86170646 original size:93 final size:93
Alignment explanation
Indices: 86170490--86170660 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
86170480 GGATGGTTGA
* * * * *
86170490 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
86170555 TGAGTCCAAGTTCGTGAGATGTAACTAG
66 TGAGTCCAAGTTCGTGAGATGTAACTAG
* *
86170583 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
*
86170648 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
86170661 CCTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCATTGAGT
TGAGTCCAAGTTCGTGAGATGTAACTAG
Found at i:86173270 original size:52 final size:52
Alignment explanation
Indices: 86173192--86173298 Score: 214
Period size: 52 Copynumber: 2.1 Consensus size: 52
86173182 AAACTAAAAG
86173192 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTGTGTCCAGCCCGT
1 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTGTGTCCAGCCCGT
86173244 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTGTGTCCAGCCCGT
1 GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTGTGTCCAGCCCGT
86173296 GTA
1 GTA
86173299 CCCTACGAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.20, C:0.34, G:0.25, T:0.21
Consensus pattern (52 bp):
GTATACTAGCTTGGGTCACATGGCCAACCACACGCCCGTGTGTCCAGCCCGT
Found at i:86178868 original size:65 final size:65
Alignment explanation
Indices: 86178764--86178892 Score: 240
Period size: 65 Copynumber: 2.0 Consensus size: 65
86178754 TTAAGGTATG
*
86178764 TGTTTTTTATCGGTTTTTGATAATTTCTACGTTTTTGTGATCGTTGCTCTATATACTATCAAGCA
1 TGTTTTTTATCGATTTTTGATAATTTCTACGTTTTTGTGATCGTTGCTCTATATACTATCAAGCA
*
86178829 TGTTTTTTATCGATTTTTGATAATTTCTACGTTTTTGTGATCGTTGCTCTGTATACTATCAAGC
1 TGTTTTTTATCGATTTTTGATAATTTCTACGTTTTTGTGATCGTTGCTCTATATACTATCAAGC
86178893 CCATGCCTCA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.19, C:0.14, G:0.16, T:0.51
Consensus pattern (65 bp):
TGTTTTTTATCGATTTTTGATAATTTCTACGTTTTTGTGATCGTTGCTCTATATACTATCAAGCA
Found at i:86179685 original size:43 final size:43
Alignment explanation
Indices: 86179549--86179711 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
86179539 TAGGATTTCA
* * * *
86179549 GATATATGATTTCGTGTAAGACCACGTCTGGGA-AGTTGGCACC
1 GATATTTGATTTCGTGTAAAACCATGTCTGGGACAG-TGGCATC
* * * *
86179592 GAT-TTGAGATTTATGTGTAAAACCATGTCTGGGACATTGGAATC
1 GATATT-TGATTT-CGTGTAAAACCATGTCTGGGACAGTGGCATC
* * *
86179636 G-TATTTGATTTTGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATATTTGATTTCGTGTAAAACCATGTCTGGGACAGTGGCATC
* *
86179678 GATATTTGATTACATGTAAAACCATGTCTGGGAC
1 GATATTTGATTTCGTGTAAAACCATGTCTGGGAC
86179712 GTTGGTATTG
Statistics
Matches: 97, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 29 0.30
43 41 0.42
44 26 0.27
45 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
GATATTTGATTTCGTGTAAAACCATGTCTGGGACAGTGGCATC
Found at i:86180454 original size:23 final size:22
Alignment explanation
Indices: 86180423--86180465 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
86180413 TTGTGAATCA
* *
86180423 TATGTTTTGGTATGACTTTGGCT
1 TATGATTTGGCATGA-TTTGGCT
86180446 TATGATTTGGCATGATTTGG
1 TATGATTTGGCATGATTTGG
86180466 TATGGATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.16, C:0.07, G:0.28, T:0.49
Consensus pattern (22 bp):
TATGATTTGGCATGATTTGGCT
Found at i:86181535 original size:43 final size:44
Alignment explanation
Indices: 86181445--86181565 Score: 147
Period size: 43 Copynumber: 2.8 Consensus size: 44
86181435 TCACATATTG
* * * * * * *
86181445 ATGCCACTGTCCCAAATAGGGTCTTACACGAAAT-TGATTAACG
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAATAACA
86181488 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAAT-ACA
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAATAACA
* *
86181531 ATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 ATGCCAATGTCCCAAACATGGTCTTACACGTAATC
86181566 ACGTCTCAAT
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 65 0.96
44 3 0.04
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (44 bp):
ATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAATAACA
Found at i:86182115 original size:28 final size:29
Alignment explanation
Indices: 86182057--86182115 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
86182047 TTTATTTCAT
* *
86182057 AATTTAACCCCTCGATTTACATTTTTCTC
1 AATTTAACCCCTCAATTGACATTTTTCTC
* *
86182086 AATTTAATCCCT-AATTGACATTTTTGTC
1 AATTTAACCCCTCAATTGACATTTTTCTC
86182114 AA
1 AA
86182116 AAATCACTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.29, C:0.22, G:0.05, T:0.44
Consensus pattern (29 bp):
AATTTAACCCCTCAATTGACATTTTTCTC
Found at i:86193941 original size:2 final size:2
Alignment explanation
Indices: 86193927--86193966 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
86193917 TCAAGATTTG
*
86193927 AT AT AT GT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
86193967 GGTTGGGATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:86204806 original size:15 final size:14
Alignment explanation
Indices: 86204786--86204833 Score: 59
Period size: 15 Copynumber: 3.6 Consensus size: 14
86204776 GCTAAGGAGT
86204786 GAAGGAGAATAAAGA
1 GAAGGAGAAT-AAGA
86204801 GAAGGAGAATAAGA
1 GAAGGAGAATAAGA
86204815 GAA-GA-AA-AA-A
1 GAAGGAGAATAAGA
86204825 GAAGGAGAA
1 GAAGGAGAA
86204834 GGAGAGGGCG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 4 0.13
13 2 0.06
14 7 0.23
15 10 0.32
ACGTcount: A:0.62, C:0.00, G:0.33, T:0.04
Consensus pattern (14 bp):
GAAGGAGAATAAGA
Found at i:86204839 original size:24 final size:26
Alignment explanation
Indices: 86204791--86204839 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
86204781 GGAGTGAAGG
*
86204791 AGAATAAAGAGAAGGAGAATAAGAGA
1 AGAATAAAGAGAAGGAGAAGAAGAGA
*
86204817 AGAA-AAA-AGAAGGAGAAGGAGAG
1 AGAATAAAGAGAAGGAGAAGAAGAG
86204840 GGCGAGAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 14 0.67
25 3 0.14
26 4 0.19
ACGTcount: A:0.61, C:0.00, G:0.35, T:0.04
Consensus pattern (26 bp):
AGAATAAAGAGAAGGAGAAGAAGAGA
Found at i:86205327 original size:49 final size:51
Alignment explanation
Indices: 86205221--86205330 Score: 124
Period size: 49 Copynumber: 2.2 Consensus size: 51
86205211 AAAGAATGTT
** * *
86205221 TTATTTTTTTATGTAATTTATTTGTTATGTGTGTTTTAGGTTGATTAGATA
1 TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGATTAGATA
86205272 -TA-TTTTTTATGTAATTTATTTGGCATGT-TATTTT-GATT-ATTTTA-ATA
1 TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGA--TTAGATA
86205319 TTATTTTTTTAT
1 TTATTTTTTTAT
86205331 ATTTTATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
46 1 0.02
47 6 0.12
48 10 0.20
49 32 0.63
50 2 0.04
ACGTcount: A:0.23, C:0.01, G:0.13, T:0.64
Consensus pattern (51 bp):
TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGATTAGATA
Found at i:86205564 original size:2 final size:2
Alignment explanation
Indices: 86205557--86205588 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
86205547 TGTTATTATT
86205557 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86205589 TTTAAACCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:86208640 original size:12 final size:12
Alignment explanation
Indices: 86208623--86208647 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86208613 TTTTAAAATT
86208623 ATGAATAATATA
1 ATGAATAATATA
86208635 ATGAATAATATA
1 ATGAATAATATA
86208647 A
1 A
86208648 AACATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGAATAATATA
Found at i:86208659 original size:16 final size:16
Alignment explanation
Indices: 86208638--86208714 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 16
86208628 TAATATAATG
86208638 AATAATATAA-AACATA
1 AATAATATAACAA-ATA
86208654 AATAATATAACAAATA
1 AATAATATAACAAATA
*
86208670 ATATACGATATACATAACATA
1 A-ATA--ATATA-ACAA-ATA
86208691 TAATAATA-AA-AAATA
1 -AATAATATAACAAATA
*
86208706 AGTAATATA
1 AATAATATA
86208715 TAATAAAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
14 6 0.12
15 4 0.08
16 16 0.31
17 6 0.12
18 1 0.02
19 8 0.16
20 3 0.06
21 6 0.12
22 1 0.02
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (16 bp):
AATAATATAACAAATA
Found at i:86208719 original size:14 final size:13
Alignment explanation
Indices: 86208630--86208751 Score: 53
Period size: 14 Copynumber: 9.2 Consensus size: 13
86208620 ATTATGAATA
86208630 ATATAATGAATAAT
1 ATATAAT-AATAAT
86208644 ATA-AA-ACATAAAT
1 ATATAATA-AT-AAT
*
86208657 AATATAACAAATAAT
1 -ATATAA-TAATAAT
* *
86208672 ATACGATATACATAAC
1 ATA-TA-ATA-ATAAT
86208688 ATATAATAATAA-
1 ATATAATAATAAT
86208700 A-A-AATAAGTAAT
1 ATATAATAA-TAAT
86208712 ATATAATAA-AA-
1 ATATAATAATAAT
**
86208723 ATATAATAAATGTT
1 ATATAAT-AATAAT
86208737 ATATAATAA-AAT
1 ATATAATAATAAT
86208749 ATA
1 ATA
86208752 ATATAAATAT
Statistics
Matches: 84, Mismatches: 8, Indels: 34
0.67 0.06 0.27
Matches are distributed among these distances:
10 5 0.06
11 12 0.14
12 12 0.14
13 12 0.14
14 24 0.29
15 8 0.10
16 10 0.12
17 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.30
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:86208726 original size:11 final size:11
Alignment explanation
Indices: 86208693--86208762 Score: 56
Period size: 11 Copynumber: 6.3 Consensus size: 11
86208683 ATAACATATA
86208693 ATAATAAAAA-
1 ATAATAAAAAT
*
86208703 ATAAGT-AATAT
1 ATAA-TAAAAAT
86208714 ATAATAAAAAT
1 ATAATAAAAAT
*
86208725 ATAATAAATGTTAT
1 ATAATAAA---AAT
86208739 ATAAT-AAAAT
1 ATAATAAAAAT
*
86208749 ATAATATAAAT
1 ATAATAAAAAT
86208760 ATA
1 ATA
86208763 TATAGGAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
10 15 0.31
11 24 0.50
13 2 0.04
14 7 0.15
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
ATAATAAAAAT
Found at i:86208766 original size:25 final size:25
Alignment explanation
Indices: 86208688--86208754 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
86208678 TATACATAAC
* *
86208688 ATATAATAATAAA-A-AATAAGTAAT
1 ATATAATAA-AAATATAATAAATGAT
*
86208712 ATATAATAAAAATATAATAAATGTT
1 ATATAATAAAAATATAATAAATGAT
86208737 ATATAAT-AAAATATAATA
1 ATATAATAAAAATATAATA
86208755 TAAATATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 3 0.08
24 21 0.55
25 14 0.37
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (25 bp):
ATATAATAAAAATATAATAAATGAT
Found at i:86210913 original size:205 final size:205
Alignment explanation
Indices: 86210404--86211396 Score: 1691
Period size: 205 Copynumber: 4.8 Consensus size: 205
86210394 AAATCTGTTT
* * *
86210404 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCAGCATAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* * *
86210469 GCGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGAATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* * *
86210534 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCCCTCTGTCGAATATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTC-AAAATG
* *
86210599 GAGACGCCAAA
195 GAGATGCCAGA
* * *
86210610 CTTCGATTTGTTCTTTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
*
86210675 GTGAAAGCCAAATCAGCTATGTTTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
*
86210740 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATGTATCTGCTCTCCGTCAAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATGG
86210805 AGATGCCAGA
196 AGATGCCAGA
* * * *
86210815 CTTTGATTTGTTCTATAACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCGGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
86210880 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
86210945 AGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCGAAATGG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATGG
86211010 AGATGCCAGA
196 AGATGCCAGA
86211020 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
*
86211085 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCATAAGGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
86211150 GGATCTGCTTTAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATAG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATGG
86211215 AGATGCCAGA
196 AGATGCCAGA
* *
86211225 CTTCGATTTGTTCTCTGACAATACAGATATGCCAAATCATCTTAGATTTGCTTCAGCATAAAC-C
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
* *
86211289 GTGAAAACCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
* *
86211354 GGATTTGCTTCAGTATAAACATCTGAAGGTTAGATCTGTTATG
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATG
86211397 CTGCGGCCTA
Statistics
Matches: 746, Mismatches: 41, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
204 103 0.14
205 466 0.62
206 177 0.24
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (205 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAACCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTATCTGCTCTCCGTCAAAATGG
AGATGCCAGA
Found at i:86221769 original size:16 final size:16
Alignment explanation
Indices: 86221744--86221782 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
86221734 GTAATATCTA
*
86221744 AAGTTTAACTCTAACT
1 AAGTTGAACTCTAACT
86221760 AAGTTGAACTCTAACT
1 AAGTTGAACTCTAACT
86221776 AAGTTGA
1 AAGTTGA
86221783 GCTATTACGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (16 bp):
AAGTTGAACTCTAACT
Found at i:86223011 original size:49 final size:51
Alignment explanation
Indices: 86222905--86223014 Score: 124
Period size: 49 Copynumber: 2.2 Consensus size: 51
86222895 AAAGAATGTT
** * *
86222905 TTATTTTTTTATGTAATTTATTTGTTATGTGTGTTTTAGGTTGATTAGATA
1 TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGATTAGATA
86222956 -TA-TTTTTTATGTAATTTATTTGGCATGT-TATTTT-GATT-ATTTTA-ATA
1 TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGA--TTAGATA
86223003 TTATTTTTTTAT
1 TTATTTTTTTAT
86223015 ATTTTATGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
46 1 0.02
47 6 0.12
48 10 0.20
49 32 0.63
50 2 0.04
ACGTcount: A:0.23, C:0.01, G:0.13, T:0.64
Consensus pattern (51 bp):
TTATTTTTTTATGTAATTTATTTGGCATGTGTATTTTAGATTGATTAGATA
Found at i:86223248 original size:2 final size:2
Alignment explanation
Indices: 86223241--86223270 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
86223231 TGTTATTATT
86223241 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86223271 TTAAACCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:86226323 original size:12 final size:12
Alignment explanation
Indices: 86226306--86226330 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86226296 TTTTAAAATT
86226306 ATGAATAATATA
1 ATGAATAATATA
86226318 ATGAATAATATA
1 ATGAATAATATA
86226330 A
1 A
86226331 AACATAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (12 bp):
ATGAATAATATA
Found at i:86226342 original size:16 final size:16
Alignment explanation
Indices: 86226321--86226397 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 16
86226311 TAATATAATG
86226321 AATAATATAA-AACATA
1 AATAATATAACAA-ATA
86226337 AATAATATAACAAATA
1 AATAATATAACAAATA
*
86226353 ATATACGATATACATAACATA
1 A-ATA--ATATA-ACAA-ATA
86226374 TAATAATA-AA-AAATA
1 -AATAATATAACAAATA
*
86226389 AGTAATATA
1 AATAATATA
86226398 TAATAAAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 17
0.73 0.03 0.24
Matches are distributed among these distances:
14 6 0.12
15 4 0.08
16 16 0.31
17 6 0.12
18 1 0.02
19 8 0.16
20 3 0.06
21 6 0.12
22 1 0.02
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (16 bp):
AATAATATAACAAATA
Found at i:86226402 original size:14 final size:13
Alignment explanation
Indices: 86226313--86226434 Score: 53
Period size: 14 Copynumber: 9.2 Consensus size: 13
86226303 ATTATGAATA
86226313 ATATAATGAATAAT
1 ATATAAT-AATAAT
86226327 ATA-AA-ACATAAAT
1 ATATAATA-AT-AAT
*
86226340 AATATAACAAATAAT
1 -ATATAA-TAATAAT
* *
86226355 ATACGATATACATAAC
1 ATA-TA-ATA-ATAAT
86226371 ATATAATAATAA-
1 ATATAATAATAAT
86226383 A-A-AATAAGTAAT
1 ATATAATAA-TAAT
86226395 ATATAATAA-AA-
1 ATATAATAATAAT
**
86226406 ATATAATAAATGTT
1 ATATAAT-AATAAT
86226420 ATATAATAA-AAT
1 ATATAATAATAAT
86226432 ATA
1 ATA
86226435 ATATAAATAT
Statistics
Matches: 84, Mismatches: 8, Indels: 34
0.67 0.06 0.27
Matches are distributed among these distances:
10 5 0.06
11 12 0.14
12 12 0.14
13 12 0.14
14 24 0.29
15 8 0.10
16 10 0.12
17 1 0.01
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.30
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:86226409 original size:11 final size:11
Alignment explanation
Indices: 86226376--86226445 Score: 56
Period size: 11 Copynumber: 6.3 Consensus size: 11
86226366 ATAACATATA
86226376 ATAATAAAAA-
1 ATAATAAAAAT
*
86226386 ATAAGT-AATAT
1 ATAA-TAAAAAT
86226397 ATAATAAAAAT
1 ATAATAAAAAT
*
86226408 ATAATAAATGTTAT
1 ATAATAAA---AAT
86226422 ATAAT-AAAAT
1 ATAATAAAAAT
*
86226432 ATAATATAAAT
1 ATAATAAAAAT
86226443 ATA
1 ATA
86226446 TATAGGAAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
10 15 0.31
11 24 0.50
13 2 0.04
14 7 0.15
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (11 bp):
ATAATAAAAAT
Found at i:86226449 original size:25 final size:25
Alignment explanation
Indices: 86226371--86226437 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
86226361 TATACATAAC
* *
86226371 ATATAATAATAAA-A-AATAAGTAAT
1 ATATAATAA-AAATATAATAAATGAT
*
86226395 ATATAATAAAAATATAATAAATGTT
1 ATATAATAAAAATATAATAAATGAT
86226420 ATATAAT-AAAATATAATA
1 ATATAATAAAAATATAATA
86226438 TAAATATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 3 0.08
24 21 0.55
25 14 0.37
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (25 bp):
ATATAATAAAAATATAATAAATGAT
Found at i:86231072 original size:18 final size:18
Alignment explanation
Indices: 86231028--86231072 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
86231018 ATACGAACTA
*
86231028 GAGCCAGAGCCAGAGCCC
1 GAGCCCGAGCCAGAGCCC
* * *
86231046 AAGCTCGAGCCTGAGCCC
1 GAGCCCGAGCCAGAGCCC
86231064 GAGCCCGAG
1 GAGCCCGAG
86231073 TGATTGCATA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.24, C:0.38, G:0.33, T:0.04
Consensus pattern (18 bp):
GAGCCCGAGCCAGAGCCC
Found at i:86231255 original size:33 final size:32
Alignment explanation
Indices: 86231180--86231266 Score: 102
Period size: 33 Copynumber: 2.7 Consensus size: 32
86231170 TTGATATCTT
*
86231180 TGGGTCGTATCCACCGCAGTACAGCACTCCTC
1 TGGGTCGTATCCACCGCAGTACACCACTCCTC
** *
86231212 TCGGCCCGTATCCACCGCAGTACTCCACTCCTCC
1 T-GGGTCGTATCCACCGCAGTACACCACTCCT-C
* *
86231246 TGGGTCGTATCTACCGTAGTA
1 TGGGTCGTATCCACCGCAGTA
86231267 TGACACTCCT
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
32 1 0.02
33 42 0.93
34 2 0.04
ACGTcount: A:0.17, C:0.38, G:0.21, T:0.24
Consensus pattern (32 bp):
TGGGTCGTATCCACCGCAGTACACCACTCCTC
Found at i:86239006 original size:22 final size:22
Alignment explanation
Indices: 86238981--86239028 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
86238971 GGTTAGGGTG
* *
86238981 GGTTAGGGTTTTTATGGTTTAT
1 GGTTAGAGTTTTTAGGGTTTAT
*
86239003 GGTTAGATTTTTTAGGGTTTAT
1 GGTTAGAGTTTTTAGGGTTTAT
86239025 GGTT
1 GGTT
86239029 TTTATAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (22 bp):
GGTTAGAGTTTTTAGGGTTTAT
Found at i:86239352 original size:126 final size:123
Alignment explanation
Indices: 86239209--86239598 Score: 415
Period size: 126 Copynumber: 3.1 Consensus size: 123
86239199 TTTTTTGTTT
* * * * * * *
86239209 TTTTTCTTCAGTAGTATCTAGAAAAAAAAATTTAAGAAGAAGTTTCTGAAGAAATAGTATCCAAA
1 TTTTTCTACAGTGGTATCTAGAAAAAAAAATTTGAGAAGACGTTTCTGAAAAAATAGTGTCAAAA
* * * * *
86239274 ACGCTTTAAGCATGACGCATTGTCAGCAAAATTACTGAAAAATGCTTCCACGTGGACGTTT
66 ACACTTTAAGCA-GATGCATT-TCAGCAAAATTACTGAAAAA-GCTCCCACGTGGACGCTC
* * * *
86239335 TTTTTCTACAGTGGTATCTA-AGAAAATAATTTTGAGAAGACGTTTTTGAAAAAATAGTGTAAAA
1 TTTTTCTACAGTGGTATCTAGA-AAAAAAAATTTGAGAAGACGTTTCTGAAAAAATAGTGTCAAA
* * * * *
86239399 AACACTTTAAGCAGGATGCACTCTCAGCAAAAGTGCTGAAAAAAGCTCCCACGTGCATGCTC
65 AACACTTTAAGCA-GATGCA-TTTCAGCAAAATTACTG-AAAAAGCTCCCACGTGGACGCTC
** * * *
86239461 TTTTGATACAGTGGTATCT-GAAAAAAAAATTGTGAGATGACCTTTCTGAACAAATAGTGTCAAA
1 TTTTTCTACAGTGGTATCTAGAAAAAAAAATT-TGAGAAGACGTTTCTGAAAAAATAGTGTCAAA
* *
86239525 AACACTTCATGCAGTATGCACTTTCAGCAAAATTACTGAGAAAAGCTCCCACGTGGACGCTC
65 AACACTTTAAGCAG-ATGCA-TTTCAGCAAAATTACTGA-AAAAGCTCCCACGTGGACGCTC
86239587 TTTTTCTACAGT
1 TTTTTCTACAGT
86239599 AGTTCCTATT
Statistics
Matches: 217, Mismatches: 40, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
125 11 0.05
126 200 0.92
127 6 0.03
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (123 bp):
TTTTTCTACAGTGGTATCTAGAAAAAAAAATTTGAGAAGACGTTTCTGAAAAAATAGTGTCAAAA
ACACTTTAAGCAGATGCATTTCAGCAAAATTACTGAAAAAGCTCCCACGTGGACGCTC
Found at i:86242719 original size:29 final size:29
Alignment explanation
Indices: 86242687--86242775 Score: 69
Period size: 29 Copynumber: 3.1 Consensus size: 29
86242677 AAAACAACTT
86242687 TTATTTTATTAAAAATATAAAAGAGTAAA
1 TTATTTTATTAAAAATATAAAAGAGTAAA
* * * ** *
86242716 TTA--TAATT-ATAATGCTAAAA-ACAAATT
1 TTATTTTATTAAAAAT-ATAAAAGAGTAA-A
*
86242743 TTATTTTATTACAAATATAAAAGAGTAAA
1 TTATTTTATTAAAAATATAAAAGAGTAAA
86242772 TTAT
1 TTAT
86242776 AATTAAAATA
Statistics
Matches: 41, Mismatches: 13, Indels: 12
0.62 0.20 0.18
Matches are distributed among these distances:
26 7 0.17
27 12 0.29
29 16 0.39
30 6 0.15
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (29 bp):
TTATTTTATTAAAAATATAAAAGAGTAAA
Found at i:86242737 original size:56 final size:56
Alignment explanation
Indices: 86242677--86242811 Score: 225
Period size: 56 Copynumber: 2.4 Consensus size: 56
86242667 TTCCTTATTC
* * *
86242677 AAAACAACTTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTATAATGCTA
1 AAAACAAATTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTAAAATACTA
* *
86242733 AAAACAAATTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATTA
1 AAAACAAATTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTAAAATACTA
86242789 AAAACAAATTTTATTTTATTAAA
1 AAAACAAATTTTATTTTATTAAA
86242812 TGAAAAAATA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.39
Consensus pattern (56 bp):
AAAACAAATTTTATTTTATTAAAAATATAAAAGAGTAAATTATAATTAAAATACTA
Found at i:86243252 original size:18 final size:18
Alignment explanation
Indices: 86243229--86243263 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
86243219 AAATGGAAAC
*
86243229 ATATAAGGGTTAGGATAT
1 ATATAAGGGCTAGGATAT
86243247 ATATAAGGGCTAGGATA
1 ATATAAGGGCTAGGATA
86243264 CGCACCTAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAT
Found at i:86243891 original size:7 final size:7
Alignment explanation
Indices: 86243881--86243927 Score: 85
Period size: 7 Copynumber: 6.7 Consensus size: 7
86243871 TTGTATACAT
86243881 AATACTA
1 AATACTA
86243888 AATACTA
1 AATACTA
86243895 AATACTA
1 AATACTA
86243902 AATACTA
1 AATACTA
*
86243909 AATATTA
1 AATACTA
86243916 AATACTA
1 AATACTA
86243923 AATAC
1 AATAC
86243928 AAAAGAGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (7 bp):
AATACTA
Found at i:86244927 original size:48 final size:48
Alignment explanation
Indices: 86244872--86244969 Score: 160
Period size: 48 Copynumber: 2.0 Consensus size: 48
86244862 ATAAAATTAA
**
86244872 AATTAAAATTGCATAAATGAAAAAAATATTAAATTGTATTGAAAAATT
1 AATTAAAATTGCATAAATGAAAAAAATATTAAATACTATTGAAAAATT
* *
86244920 AATTAAAATTGCATAAATTAAAAAAATATTAAATACTATTGAAATATT
1 AATTAAAATTGCATAAATGAAAAAAATATTAAATACTATTGAAAAATT
86244968 AA
1 AA
86244970 AATTATCACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (48 bp):
AATTAAAATTGCATAAATGAAAAAAATATTAAATACTATTGAAAAATT
Found at i:86245149 original size:22 final size:22
Alignment explanation
Indices: 86245124--86245172 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
86245114 AGAGAGCTTT
86245124 GAGAAAATTT-GAGAGAATATGA
1 GAGAAAATTTGGA-AGAATATGA
** *
86245146 GAGAATTTTTGGAAGAATTTGA
1 GAGAAAATTTGGAAGAATATGA
86245168 GAGAA
1 GAGAA
86245173 TTTGGATAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.27
Consensus pattern (22 bp):
GAGAAAATTTGGAAGAATATGA
Found at i:86252027 original size:22 final size:21
Alignment explanation
Indices: 86252002--86252042 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
86251992 GGGGTCTAGG
*
86252002 AAAATTATATATATCAAATTCC
1 AAAAATATATAT-TCAAATTCC
86252024 AAAAATATATATTCAAATT
1 AAAAATATATATTCAAATT
86252043 GAAACCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (21 bp):
AAAAATATATATTCAAATTCC
Found at i:86263816 original size:74 final size:74
Alignment explanation
Indices: 86263724--86263875 Score: 295
Period size: 74 Copynumber: 2.1 Consensus size: 74
86263714 TTGAGAGTTT
86263724 AATTTCTGCTCATGTAAATAGAATACATTTCATGACTAGCCATTTACCTCTTCAAAAAGCATCCA
1 AATTTCTGCTCATGTAAATAGAATACATTTCATGACTAGCCATTTACCTCTTCAAAAAGCATCCA
86263789 TGGTGAGAA
66 TGGTGAGAA
*
86263798 AATTTCTGCTCATGTAAATAGAATACATTTCATGACTAGCCATTTACCTCTTCAAAAAGTATCCA
1 AATTTCTGCTCATGTAAATAGAATACATTTCATGACTAGCCATTTACCTCTTCAAAAAGCATCCA
86263863 TGGTGAGAA
66 TGGTGAGAA
86263872 AATT
1 AATT
86263876 AATCACTGTT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 77 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (74 bp):
AATTTCTGCTCATGTAAATAGAATACATTTCATGACTAGCCATTTACCTCTTCAAAAAGCATCCA
TGGTGAGAA
Found at i:86266965 original size:20 final size:21
Alignment explanation
Indices: 86266926--86266965 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
86266916 TAACTCTGAC
*
86266926 TTTGACTCATGATAACTTTGG
1 TTTGACACATGATAACTTTGG
*
86266947 TTTGACACAT-ATCACTTTG
1 TTTGACACATGATAACTTTG
86266966 TAATTAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.42
Consensus pattern (21 bp):
TTTGACACATGATAACTTTGG
Found at i:86269896 original size:22 final size:22
Alignment explanation
Indices: 86269869--86269916 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
86269859 TCATAATATC
86269869 ATATTAAATCTAATAAATAATA
1 ATATTAAATCTAATAAATAATA
* * *
86269891 ATATTAATTGTAATAAGTAATA
1 ATATTAAATCTAATAAATAATA
86269913 ATAT
1 ATAT
86269917 AATTATATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (22 bp):
ATATTAAATCTAATAAATAATA
Found at i:86274696 original size:13 final size:13
Alignment explanation
Indices: 86274678--86274702 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86274668 ACTTATAGAA
86274678 AAATATTAAAAAT
1 AAATATTAAAAAT
86274691 AAATATTAAAAA
1 AAATATTAAAAA
86274703 AACATAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATATTAAAAAT
Found at i:86284528 original size:11 final size:11
Alignment explanation
Indices: 86284512--86284537 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
86284502 CAGACACGTA
86284512 TTTGGAGGGTT
1 TTTGGAGGGTT
86284523 TTTGGAGGGTT
1 TTTGGAGGGTT
86284534 TTTG
1 TTTG
86284538 AAGGTTCACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.42, T:0.50
Consensus pattern (11 bp):
TTTGGAGGGTT
Found at i:86285525 original size:25 final size:25
Alignment explanation
Indices: 86285468--86285525 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 25
86285458 TACATATTTT
86285468 ATTATTTATATTTAGTTATATAATAA
1 ATTATTTA-ATTTAGTTATATAATAA
*
86285494 A-TA--TAATTTA-TTATTTTAATAA
1 ATTATTTAATTTAGTTA-TATAATAA
86285516 ATTATTTAAT
1 ATTATTTAAT
86285526 ATTTCAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 9
0.73 0.03 0.24
Matches are distributed among these distances:
21 3 0.11
22 13 0.48
23 4 0.15
25 6 0.22
26 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (25 bp):
ATTATTTAATTTAGTTATATAATAA
Found at i:86285528 original size:20 final size:22
Alignment explanation
Indices: 86285488--86285529 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
86285478 TTTAGTTATA
*
86285488 TAATAAATATAATTTATTATTT
1 TAATAAATATAATTTAATATTT
86285510 TAATAAAT-T-ATTTAATATTT
1 TAATAAATATAATTTAATATTT
86285530 CAATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TAATAAATATAATTTAATATTT
Found at i:86285553 original size:13 final size:13
Alignment explanation
Indices: 86285536--86285581 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
86285526 ATTTCAATTT
86285536 TATTTTAATAATAA
1 TATTTTAA-AATAA
86285550 -ATTTTAAAAATAA
1 TATTTT-AAAATAA
*
86285563 TATTTTTAAATAA
1 TATTTTAAAATAA
86285576 TATTTT
1 TATTTT
86285582 TCACATATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 22 0.76
14 7 0.24
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTTTAAAATAA
Found at i:86285630 original size:15 final size:15
Alignment explanation
Indices: 86285596--86285666 Score: 56
Period size: 15 Copynumber: 4.6 Consensus size: 15
86285586 ATATTATTGA
86285596 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
86285609 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
86285624 AAATATTTATTACAATTAT
1 AAATA-TT-TT--AATAAT
*
86285643 AAATATATTAATAAT
1 AAATATTTTAATAAT
*
86285658 AAATGTTTT
1 AAATATTTT
86285667 GTAGTATAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 18 0.40
16 2 0.04
17 4 0.09
18 1 0.02
19 10 0.22
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:86292164 original size:13 final size:14
Alignment explanation
Indices: 86292148--86292179 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
86292138 AAGCGGAGGG
86292148 AAAAAGTGAG-GAA
1 AAAAAGTGAGAGAA
86292161 AAAAA-TGAGAGAA
1 AAAAAGTGAGAGAA
86292174 AAAAAG
1 AAAAAG
86292180 GGTTATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.24
13 13 0.76
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (14 bp):
AAAAAGTGAGAGAA
Found at i:86292412 original size:2 final size:2
Alignment explanation
Indices: 86292405--86292431 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
86292395 CTATTTCATT
86292405 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
86292432 GTTCACAACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86293218 original size:13 final size:13
Alignment explanation
Indices: 86293196--86293228 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
86293186 AAGGGTTTGT
86293196 TTAT-TAAACTAA
1 TTATCTAAACTAA
86293208 TTATCTAAACTAA
1 TTATCTAAACTAA
*
86293221 TTAACTAA
1 TTATCTAA
86293229 TTTAATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:86297702 original size:37 final size:37
Alignment explanation
Indices: 86297643--86297751 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
86297633 AGCTCAGACG
* * *
86297643 AAATCTCCACAAGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
86297680 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
86297717 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86297752 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:86297955 original size:50 final size:50
Alignment explanation
Indices: 86297901--86298224 Score: 327
Period size: 48 Copynumber: 6.7 Consensus size: 50
86297891 CATCGCCTAC
* * *
86297901 ATATTTCACACTAGCCATTCGGCTTTACCACTTATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATATAT
*
86297951 ATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCATAT-T
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATGCATATCTCATATAT
* * * * * *
86298000 -CA--CCACATTGGCCATTCGGCCTTATCACACATATGCAT-GCTCACAT-T
1 ATATTTCACATTAGCCATTCGGCTTTA-C-CACATATGCATATCTCATATAT
* * * *
86298047 -CA--TCACATTGGCCATTCGGCCTTATCACATATGCATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATATAT
* *
86298094 ATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATGCATATCTCATATAT
* * *
86298142 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATATAT
*
86298192 -T-TTTCACATTAGCCATTAGGCTTTACCACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATAT
86298225 ATGCATGTTC
Statistics
Matches: 236, Mismatches: 25, Indels: 28
0.82 0.09 0.10
Matches are distributed among these distances:
45 11 0.05
46 23 0.10
47 33 0.14
48 86 0.36
49 5 0.02
50 78 0.33
ACGTcount: A:0.29, C:0.27, G:0.08, T:0.36
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCATATAT
Found at i:86298055 original size:47 final size:46
Alignment explanation
Indices: 86297956--86298388 Score: 356
Period size: 47 Copynumber: 9.1 Consensus size: 46
86297946 TATATATATT
* * * * *
86297956 TCACATTGACCATTCAGCTTTA-CCACATATGCATATCTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTCACATTCA
*
86298002 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
* * *
86298049 TCACATTGGCCATTCGGCCTTAT-CACATATGCATATCTCATATATATA
1 TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTCACAT-T-CA
* * * * *
86298097 TTTCACATTGACCATTCAGCTTTA-CCACATATGCATATCTCATACATAT-T
1 --TCACATTGGCCATTCGGCCTTATCCACATATGCAT-GCTC--ACAT-TCA
* * * * **
86298147 TCACATTAGCCATTCGGCTTTA-CCACATATACATTTCTCATACATTTT
1 TCACATTGGCCATTCGGCCTTATCCACATATGCA-TGCTC--ACATTCA
* * * * *
86298195 TCACATTAGCCATTAGGCTTTA-CCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCCAC--ATATGCATGCTCACATTCA
* *
86298242 CCACATTGGCCATTCGGCCTTATCATACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
* *
86298289 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
* ***
86298336 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATC-CACATATGCATGCTCACATTCA
86298383 TCACAT
1 TCACAT
86298389 AAAATCCTAA
Statistics
Matches: 331, Mismatches: 40, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
45 11 0.03
46 24 0.07
47 166 0.50
48 78 0.24
49 6 0.02
50 41 0.12
52 5 0.02
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.34
Consensus pattern (46 bp):
TCACATTGGCCATTCGGCCTTATCCACATATGCATGCTCACATTCA
Found at i:86298119 original size:143 final size:143
Alignment explanation
Indices: 86297914--86298357 Score: 501
Period size: 143 Copynumber: 3.1 Consensus size: 143
86297904 TTTCACACTA
* * *
86297914 GCCATTCGGCTTTACCACTTATACATATCTCATATATATATTTCACATTGACCATTCAGCTTTAC
1 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCAGCTTTAC
*
86297979 CACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
66 CACATATGCATATCTCATATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
86298044 ATTCATCACATTG
131 ATTCATCACATTG
*
86298057 GCCATTCGGCCTTATCACATATGCATATCTCATATATATATTTCACATTGACCATTCAGCTTTAC
1 GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCAGCTTTAC
* * * * *
86298122 CACATATGCATATCTCATACATAT-TTCACATTAGCCATTCGGCTTTA-C-CACATATACATTTC
66 CACATATGCATATCTCAT--AT-TCATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGC
** *
86298184 TCATACATTTTTCACATTA
127 TC--ACATTCATCACATTG
* * * * * * * *
86298203 GCCATTAGGCTTTACCACATATATGCATGT-TCATAT-T-CA--CCACATTGGCCATTCGGCCTT
1 GCCATTCGGCCTTACCAC--ATATGCATATCTCATATATATATTTCACATTGACCATTCAGCTTT
* * * * *
86298263 ATCATACATATGCAT-GCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGT
64 A-C-CACATATGCATATCTCATATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGC
86298327 TCACATTCATCACATTG
127 TCACATTCATCACATTG
86298344 GCCATTCGGCCTTA
1 GCCATTCGGCCTTA
86298358 TCTCATATAT
Statistics
Matches: 251, Mismatches: 37, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
141 25 0.10
142 22 0.09
143 110 0.44
144 18 0.07
145 32 0.13
146 29 0.12
147 6 0.02
148 9 0.04
ACGTcount: A:0.27, C:0.28, G:0.10, T:0.35
Consensus pattern (143 bp):
GCCATTCGGCCTTACCACATATGCATATCTCATATATATATTTCACATTGACCATTCAGCTTTAC
CACATATGCATATCTCATATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCAC
ATTCATCACATTG
Found at i:86298231 original size:193 final size:193
Alignment explanation
Indices: 86297901--86298277 Score: 501
Period size: 193 Copynumber: 1.9 Consensus size: 193
86297891 CATCGCCTAC
* * *
86297901 ATATTTCACACTAGCCATTCGGCTTTACCACTTATACATATCTCATATATATATTTCACATTGAC
1 ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCA-ATACATATTTCACATTGAC
* * * *
86297966 CATTCAGCTTTACCACATATGCATATCTCATATTCACCACATTGGCCATTCGGCCTTATCACACA
65 CATTCAGCTTTACCACATATACATATCTCATATTCACCACATTAGCCATTAGGCCTTACCACACA
*
86298031 TATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATC-ACATATGCATATCTCATATAT
130 TATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTATCAACATATGCATATCTCATATAT
* *
86298094 ATATTTCACA-TTGACCATTCAGCTTTACCACATATGCATATCTC-ATACATATTTCACATT-AG
1 ATATTTCACACTAG-CCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-
* * *** *
86298156 CCATTCGGCTTTACCACATATACATTTCTCATACATTTTTCACATTAGCCATTAGGCTTTACCAC
64 CCATTCAGCTTTACCACATATACATATCTCAT--ATTCACCACATTAGCCATTAGGCCTTACCAC
* * *
86298221 ATATATGCATGTTCATATTCACCACATTGGCCATTCGGCCTTATCATACATATGCAT
127 ACATATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTATCA-ACATATGCAT
86298278 GCTCACATTC
Statistics
Matches: 159, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
190 1 0.01
191 44 0.28
192 2 0.01
193 102 0.64
195 10 0.06
ACGTcount: A:0.29, C:0.27, G:0.09, T:0.36
Consensus pattern (193 bp):
ATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCAATACATATTTCACATTGACC
ATTCAGCTTTACCACATATACATATCTCATATTCACCACATTAGCCATTAGGCCTTACCACACAT
ATGCATGCTCACATTCACCACATTGGCCATTCGGCCTTATCAACATATGCATATCTCATATAT
Done.