Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 279 of 325
Found at i:86574218 original size:137 final size:137
Alignment explanation
Indices: 86574050--86574719 Score: 743
Period size: 137 Copynumber: 4.9 Consensus size: 137
86574040 CTTAAAAACT
* * * *
86574050 TCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAACACTTTAATTTACAACATTTAAA
1 TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
*
86574115 CACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACATTTATACTCCTCAATTACAGCGTT
66 CACTTCAATTTGCAGCACTTTAACACT-TCAATTAACAACATTTATACACCTCAATTACAGCGTT
86574179 AAAACATC
130 AAAACATC
* * * *
86574187 TCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTACAACATTTAAA
1 TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
* * *
86574252 CACTTCAATTTACAACA-TTTAAACACTTCAATTAACAACATTTATACACCTCAATTACAGCGAT
66 CACTTCAATTTGCAGCACTTT-AACACTTCAATTAACAACATTTATACACCTCAATTACAGCGTT
86574316 AAAACATC
130 AAAACATC
* *
86574324 TCAATTTCCAGCAATTAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATTTAAA
1 TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
* ** * * *
86574389 CACTACAATTTGCAGCACTTTAACACTTCAATTTGCAGCACTTTA-ACACTTCAATTTACAGCAC
66 CACTTCAATTTGCAGCACTTTAACACTTCAATTAACAACA-TTTATACACCTCAA-TTACAGC-G
*
86574453 TT-TAACATC
128 TTAAAACATC
* * * * * * * * **
86574462 TCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTT-CGAGCAACT
1 TCAATTTACAGCAATTAAACACTTCAATTTGCAGC-ACTTAAACACT-TCAATTTAC-AACATTT
* * * * * *
86574523 AAACACTTCAACTTGCAGTACTTAAACACTTCAATTTACAACTTTTA-AGCACTTCAATTTACAG
63 AAACACTTCAATTTGCAGCACTTTAACACTTCAATTAACAACATTTATA-CACCTCAA-TTACAG
* *
86574587 CATTTAAACA-C
126 CGTTAAAACATC
* * *
86574598 TTCAATTTACAGC-ATTTAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAA
1 -TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAA
* * *
86574662 ACACTTCAATTTGCTGCACTTTAACA-TCTCAATTAATAACATTTATAAACCTCAATTA
65 ACACTTCAATTTGCAGCACTTTAACACT-TCAATTAACAACATTTATACACCTCAATTA
86574720 ACATCTCAAT
Statistics
Matches: 450, Mismatches: 65, Indels: 37
0.82 0.12 0.07
Matches are distributed among these distances:
136 28 0.06
137 375 0.83
138 46 0.10
139 1 0.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.33
Consensus pattern (137 bp):
TCAATTTACAGCAATTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAA
CACTTCAATTTGCAGCACTTTAACACTTCAATTAACAACATTTATACACCTCAATTACAGCGTTA
AAACATC
Found at i:86574376 original size:183 final size:181
Alignment explanation
Indices: 86574007--86574672 Score: 770
Period size: 183 Copynumber: 3.7 Consensus size: 181
86573997 ACATAAACTA
* * * *
86574007 AATTT-CAGCAACTAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACA
1 AATTTACAACAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTT-AACA
* * * * * *
86574071 CTTCAATTTGCAGCACTTTAACACTTTAATTTACAACATTTAAACACTTCAATTTGCAGC-ACTT
65 CTTCAATTTACAGCACTTTAACACTTCAATTAACAACATTTAAACACCTCAA-TTACAGCGA-TA
* ** * * * * * *
86574135 TAACATCTCAATTAACAACATTTATACTCCTCAATTACAG--CGTTAAA-ACATCTC
128 AAACATCTCAATTTCCAGCAATTAAACACTTCAATTGCAGTAC-TTAAACAC-T-TC
* * * *
86574189 AATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTACAACATTTAAACA
1 AATTTACAACAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTT-AACA
* *
86574254 CTTCAATTTACAACA-TTTAAACACTTCAATTAACAACATTTATACACCTCAATTACAGCGATAA
65 CTTCAATTTACAGCACTTT-AACACTTCAATTAACAACATTTAAACACCTCAATTACAGCGATAA
86574318 AACATCTCAATTTCCAGCAATTAAACACTTCAATTTGCAGTACTTAAACACTTC
129 AACATCTCAATTTCCAGCAATTAAACACTTCAA-TTGCAGTACTTAAACACTTC
** * * * *
86574372 AATTTACAACATTTAAACACTACAATTTGCAGCACTTTAACACTTCAATTTGCAGCACTTTAACA
1 AATTTACAACAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACA-TTTAACA
*
86574437 CTTCAATTTACAGCACTTTAACA-TCTCAATTAACAACATTTATACACCTCAATTACAGCGATAA
65 CTTCAATTTACAGCACTTTAACACT-TCAATTAACAACATTTAAACACCTCAATTACAGCGATAA
* *
86574501 AACATCTCAATTTCGAGCAACTAAACACTTCAACTTGCAGTACTTAAACACTTC
129 AACATCTCAATTTCCAGCAATTAAACACTTCAA-TTGCAGTACTTAAACACTTC
*** * * * *
86574555 AATTTACAACTTTTAAGCACTTCAATTTACAGCATTTAAACACTTCAATTTACAGCATTTAACAC
1 AATTTACAACAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAACAC
* * * *
86574620 TTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATT
66 TTCAATTTACAGCACTTTAACACTTCAATTAACAACATTTAAACACCTCAATT
86574673 TGCTGCACTT
Statistics
Matches: 427, Mismatches: 46, Indels: 22
0.86 0.09 0.04
Matches are distributed among these distances:
182 96 0.22
183 316 0.74
184 12 0.03
185 3 0.01
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.32
Consensus pattern (181 bp):
AATTTACAACAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAACAC
TTCAATTTACAGCACTTTAACACTTCAATTAACAACATTTAAACACCTCAATTACAGCGATAAAA
CATCTCAATTTCCAGCAATTAAACACTTCAATTGCAGTACTTAAACACTTC
Found at i:86574681 original size:46 final size:46
Alignment explanation
Indices: 86574019--86574706 Score: 636
Period size: 46 Copynumber: 15.0 Consensus size: 46
86574009 TTTCAGCAAC
* * * *
86574019 TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
*
86574065 TAAACACTTCAATTTGCAGCACTTTAACACTTTAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
*
86574111 TAAACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATT
* * * * * * * * **
86574157 TATACTCCTCAA-TTACAG--CGTTAAAACATCTCAATTTCCAGCAAC
1 TAAACACTTCAATTTGCAGCACTTTAACAC-T-TCAATTTACAACATT
* * *
86574202 TAAACACTTCAATTTGCAGTACTTAAACACTCCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * *
86574248 TAAACACTTCAATTTACAACA-TTTAAACACTTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACATT
* * * ** * * *
86574294 TATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTCCAGCAAT
1 TAAACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTTACAACATT
* *
86574339 TAAACACTTCAATTTGCAGTACTTAAACACTTCAATTTACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * *
86574385 TAAACACTACAATTTGCAGCACTTTAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACA-TT
* *
86574432 T-AACACTTCAATTTACAGCACTTTAACA-TCTCAATTAACAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATT
* * * ** * **
86574477 TATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTT-CGAGCAAC
1 TAAACACTTCAATTTGCAGC-ACTTTAACACT-TCAATTTAC-AACATT
* * * *
86574522 TAAACACTTCAACTTGCAGTACTTAAACACTTCAATTTACAACTTT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * *
86574568 TAAGCACTTCAATTTACAGCA-TTTAAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTACAACATT
*
86574614 T-AACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAGCATT
1 TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
* * *
86574659 TAAACACTTCAATTTGCTGCACTTTAACA-TCTCAATTAATAACATT
1 TAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTTACAACATT
86574705 TA
1 TA
86574707 TAAACCTCAA
Statistics
Matches: 524, Mismatches: 93, Indels: 50
0.79 0.14 0.07
Matches are distributed among these distances:
43 6 0.01
44 2 0.00
45 141 0.27
46 362 0.69
47 7 0.01
48 6 0.01
ACGTcount: A:0.39, C:0.24, G:0.05, T:0.33
Consensus pattern (46 bp):
TAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTACAACATT
Found at i:86578801 original size:7 final size:7
Alignment explanation
Indices: 86578791--86578824 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
86578781 AAATATTAAG
86578791 TTTTTTA
1 TTTTTTA
86578798 TTTTTTA
1 TTTTTTA
86578805 -TTTTTA
1 TTTTTTA
86578811 TTTTTTAA
1 TTTTTT-A
86578819 TTTTTT
1 TTTTTT
86578825 TGAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.24
7 12 0.48
8 7 0.28
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTTA
Found at i:86578810 original size:13 final size:14
Alignment explanation
Indices: 86578792--86578823 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
86578782 AATATTAAGT
86578792 TTTTTATTTTTT-A
1 TTTTTATTTTTTAA
86578805 TTTTTATTTTTTAA
1 TTTTTATTTTTTAA
86578819 TTTTT
1 TTTTT
86578824 TTGAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTATTTTTTAA
Found at i:86580231 original size:40 final size:40
Alignment explanation
Indices: 86580138--86580232 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
86580128 GGCATTTTCA
* * * *
86580138 AAAAGCGGCACTAATACTCGACTTATAGCGGCGTTTTTAC
1 AAAAGCGCCGCTAAAACTCGACCTATAGCGGCGTTTTTAC
*
86580178 AAAAGCGCCGCTAAAACTCGACCTATAGCGGCTTTTTTAC
1 AAAAGCGCCGCTAAAACTCGACCTATAGCGGCGTTTTTAC
*
86580218 AAAAGCGCGGCTAAA
1 AAAAGCGCCGCTAAA
86580233 GCCACTAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (40 bp):
AAAAGCGCCGCTAAAACTCGACCTATAGCGGCGTTTTTAC
Found at i:86580377 original size:40 final size:41
Alignment explanation
Indices: 86580311--86580401 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 41
86580301 GATCGAGCAT
* * *
86580311 TAGCGTTTTT-TAAAAAACGCCGCTAATGCTCGTTCTTTAG
1 TAGCGTTTTTCGAAAAAACGCCACTAATACTCGTTCTTTAG
*
86580351 TAGCGTTTTTCGAAAAGA-GCCACTAATACTCGTTCTTTAG
1 TAGCGTTTTTCGAAAAAACGCCACTAATACTCGTTCTTTAG
*
86580391 TGGCGTTTTTC
1 TAGCGTTTTTC
86580402 ATTCAAACGC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
40 40 0.89
41 5 0.11
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (41 bp):
TAGCGTTTTTCGAAAAAACGCCACTAATACTCGTTCTTTAG
Found at i:86580495 original size:16 final size:18
Alignment explanation
Indices: 86580456--86580489 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86580446 AGTGTTTATA
86580456 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
86580473 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
86580490 AATTTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:86583161 original size:127 final size:127
Alignment explanation
Indices: 86582978--86583263 Score: 547
Period size: 127 Copynumber: 2.3 Consensus size: 127
86582968 TTTAATCTGC
86582978 TCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTTAATTTCCACATAAGACTCGCT
1 TCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTTAATTTCCACATAAGACTCGCT
86583043 ATGGTAGATTTAATCCGGCCCACTACAACTTTAGGGGTATAGGATTTTTCGCTTCAATTTGG
66 ATGGTAGATTTAATCCGGCCCACTACAACTTTAGGGGTATAGGATTTTTCGCTTCAATTTGG
86583105 TCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTTAATTTCCACATAAGACTCGCT
1 TCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTTAATTTCCACATAAGACTCGCT
86583170 ATGGTAGATTTAATCCGGCCCACTACAACTTTAGGGGTATAGGATTTTTCGCTTCAATTTGG
66 ATGGTAGATTTAATCCGGCCCACTACAACTTTAGGGGTATAGGATTTTTCGCTTCAATTTGG
*
86583232 TCCACTGCAACTTC-AGCGAGATAAGACTTGTA
1 TCCACTGCAACTTCAAG-GAGATAAGATTTGTA
86583264 GCTTCAATCT
Statistics
Matches: 157, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
126 2 0.01
127 155 0.99
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (127 bp):
TCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTTAATTTCCACATAAGACTCGCT
ATGGTAGATTTAATCCGGCCCACTACAACTTTAGGGGTATAGGATTTTTCGCTTCAATTTGG
Found at i:86583268 original size:44 final size:44
Alignment explanation
Indices: 86583232--86583690 Score: 323
Period size: 44 Copynumber: 10.4 Consensus size: 44
86583222 TTCAATTTGG
* * * *
86583232 TCCACTGCAACTTCAGCGAGATAAGACTTGTAGCTTCAATCTGT
1 TCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGC
* * * * * * *
86583276 TCTATTACTACTTGAG-GAAGATAAGATTTGTAGCTTCAA-CTTAC
1 TCCACTGCAACTTCAGAG-AGATAAGATTTGTAGCTTTAATC-TGC
* * * *
86583320 TCTAATGGAACTTCAGAGAGATAAGATTTGCTATCTTTAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTTAATCTGC
* * * * * * *
86583365 TCCAATGCAACTTCAGGGGGATGAGATTTATGGCTTTAATCTAC
1 TCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGC
* * ** *
86583409 TCTACTGCAACTTCAAAGAGATAAGATTCACTATCTTTAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATT-TGTAGCTTTAATCTGC
* * *
86583454 TCCACTGTAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGC
* * * * *
86583498 TCCACTGTAACTTCAAAGAGATAAGATTTACTATCTTCAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTT-GTAGCTTTAATCTGC
* * * * * * *
86583543 TCCATTACTACTTCGGGGAGATTAGATTTATAGCTTTAATCTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGC
* * * ** * *
86583587 TCTACTGCAACTTCAAAAAGATAAGATTTGCTATATTCAATATGC
1 TCCACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTTAATCTGC
* * * * *
86583632 TCTACTACAACTTCAGGGA-ATATGATTTGTAGC-TTCATCTTGC
1 TCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATC-TGC
* *
86583675 TCCACTGTATCTTCAG
1 TCCACTGCAACTTCAG
86583691 GGGTATAGGA
Statistics
Matches: 317, Mismatches: 89, Indels: 19
0.75 0.21 0.04
Matches are distributed among these distances:
42 3 0.01
43 19 0.06
44 168 0.53
45 126 0.40
46 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (44 bp):
TCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTTAATCTGC
Found at i:86583410 original size:89 final size:89
Alignment explanation
Indices: 86583189--86583649 Score: 415
Period size: 89 Copynumber: 5.2 Consensus size: 89
86583179 TTAATCCGGC
* * * * * * * ** * **
86583189 CCACTACAACTTTAGGGGTATAGGATTTTTCGCTTCAATTTGGTCCACTGCAACTTCAGCGAGAT
1 CCACTACAACTTCAGGGGGATAAGATTTATGGCTTTAATCTACTCTACTGCAACTTCAAAGAGAT
* * * *
86583254 AAGACTT-GTAGCTTCAATCTGTT
66 AAGATTTACTATCTTCAATCTGCT
* * * * ** * * * * * *
86583277 CTATTACTACTTGAGGAAGATAAGATTTGTAGCTTCAA-CTTACTCTAATGGAACTTCAGAGAGA
1 CCACTACAACTTCAGGGGGATAAGATTTATGGCTTTAATC-TACTCTACTGCAACTTCAAAGAGA
* *
86583341 TAAGATTTGCTATCTTTAATCTGCT
65 TAAGATTTACTATCTTCAATCTGCT
* * *
86583366 CCAATGCAACTTCAGGGGGATGAGATTTATGGCTTTAATCTACTCTACTGCAACTTCAAAGAGAT
1 CCACTACAACTTCAGGGGGATAAGATTTATGGCTTTAATCTACTCTACTGCAACTTCAAAGAGAT
* *
86583431 AAGATTCACTATCTTTAATCTGCT
66 AAGATTTACTATCTTCAATCTGCT
** * * * * *
86583455 CCACTGTAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCACTGTAACTTCAAAGAGAT
1 CCACTACAACTTCAGGGGGATAAGATTTATGGCTTTAATCTACTCTACTGCAACTTCAAAGAGAT
86583520 AAGATTTACTATCTTCAATCTGCT
66 AAGATTTACTATCTTCAATCTGCT
* * * * * *
86583544 CCATTACTACTTC-GGGGAGATTAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCAAAAAGA
1 CCACTACAACTTCAGGGG-GATAAGATTTATGGCTTTAATCTACTCTACTGCAACTTCAAAGAGA
* * *
86583608 TAAGATTTGCTATATTCAATATGCT
65 TAAGATTTACTATCTTCAATCTGCT
*
86583633 CTACTACAACTTCAGGG
1 CCACTACAACTTCAGGG
86583650 AATATGATTT
Statistics
Matches: 303, Mismatches: 65, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
88 56 0.18
89 243 0.80
90 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (89 bp):
CCACTACAACTTCAGGGGGATAAGATTTATGGCTTTAATCTACTCTACTGCAACTTCAAAGAGAT
AAGATTTACTATCTTCAATCTGCT
Found at i:86583521 original size:178 final size:177
Alignment explanation
Indices: 86583296--86583689 Score: 497
Period size: 178 Copynumber: 2.2 Consensus size: 177
86583286 CTTGAGGAAG
* * * * * * *
86583296 ATAAGATTTGTAGCTTCAA-CTTACTCTAATGGAACTTCAGAGAGATAAGATTTGCTATCTTTAA
1 ATAAGATTTGTAGCTT-AATCTTGCTCCACTGTAACTTCAAAGAGATAAGATTTACTATCTTCAA
* *
86583360 TCTGCTCCAATGCAACTTCAGGGG-GATGAGATTTATGGCTTTAATCTACTCTACTGCAACTTCA
65 TCTGCTCCAATACAACTTC-GGGGAGATGAGATTTATAGCTTTAATCTACTCTACTGCAACTTCA
* * * * **
86583424 AAGAGATAAGATTCACTATCTTTAATCTGCTCCACTGTAACTTCAGGGA
129 AAAAGATAAGATTCACTATATTCAATATGCTCCACTACAACTTCAGGGA
*
86583473 GATAAGATTTGTGGCTTTAATC-TGCTCCACTGTAACTTCAAAGAGATAAGATTTACTATCTTCA
1 -ATAAGATTTGTAGC-TTAATCTTGCTCCACTGTAACTTCAAAGAGATAAGATTTACTATCTTCA
* * * *
86583537 ATCTGCTCCATTACTACTTCGGGGAGATTAGATTTATAGCTTTAATCTGCTCTACTGCAACTTCA
64 ATCTGCTCCAATACAACTTCGGGGAGATGAGATTTATAGCTTTAATCTACTCTACTGCAACTTCA
** *
86583602 AAAAGATAAGATTTGCTATATTCAATATGCTCTACTACAACTTCAGGGA
129 AAAAGATAAGATTCACTATATTCAATATGCTCCACTACAACTTCAGGGA
* * *
86583651 ATATGATTTGTAGCTTCATCTTGCTCCACTGTATCTTCA
1 ATAAGATTTGTAGCTTAATCTTGCTCCACTGTAACTTCA
86583690 GGGGTATAGG
Statistics
Matches: 185, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
176 5 0.03
177 33 0.18
178 144 0.78
179 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (177 bp):
ATAAGATTTGTAGCTTAATCTTGCTCCACTGTAACTTCAAAGAGATAAGATTTACTATCTTCAAT
CTGCTCCAATACAACTTCGGGGAGATGAGATTTATAGCTTTAATCTACTCTACTGCAACTTCAAA
AAGATAAGATTCACTATATTCAATATGCTCCACTACAACTTCAGGGA
Found at i:86592209 original size:38 final size:38
Alignment explanation
Indices: 86592138--86592214 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
86592128 TCAGCACAGC
**
86592138 TTGCGTTTCTACTTCATTATTTCTTGGCCGTGAAATAA
1 TTGCGTTTCTACTTCATTATTTCTCAGCCGTGAAATAA
**
86592176 TTGCGTTTCTACTTCATTATTTCTCAGTGGTGAAATAA
1 TTGCGTTTCTACTTCATTATTTCTCAGCCGTGAAATAA
86592214 T
1 T
86592215 CACCATCGGG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.22, C:0.17, G:0.16, T:0.45
Consensus pattern (38 bp):
TTGCGTTTCTACTTCATTATTTCTCAGCCGTGAAATAA
Found at i:86603795 original size:18 final size:19
Alignment explanation
Indices: 86603746--86603797 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
86603736 ATTCTATTAG
* *
86603746 AATAACTTTACTAGAAAACA
1 AATATCTTTAC-ATAAAACA
*
86603766 AATCTCTTTACATAAAACA
1 AATATCTTTACATAAAACA
86603785 AATAT-TTTACATA
1 AATATCTTTACATA
86603798 TACGACATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 8 0.29
19 11 0.39
20 9 0.32
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (19 bp):
AATATCTTTACATAAAACA
Found at i:86609984 original size:21 final size:22
Alignment explanation
Indices: 86609958--86610000 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
86609948 TTCATAAAAG
* *
86609958 ATAAAAA-TATTAAAATTTATA
1 ATAAAAATTATAAAAAGTTATA
86609979 ATAAAAATTATAAAAAGTTATA
1 ATAAAAATTATAAAAAGTTATA
86610001 CAATTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
ATAAAAATTATAAAAAGTTATA
Found at i:86610511 original size:57 final size:59
Alignment explanation
Indices: 86610450--86610561 Score: 149
Period size: 57 Copynumber: 1.9 Consensus size: 59
86610440 TATAGACTAG
** * *
86610450 TTTAGACAAAAAAAAATTTAAGTTTAATGT-AAAATAATTG-TCAAATTTA-AGAATTAA
1 TTTAGACAAAAAAAAATCAAACTTTAATATAAAAATAATTGCT-AAATTTAGAGAATTAA
*
86610507 TTTAGACAAAAAAATATCAAACTTTAATATAAAAATAATTGCTAAATTTAGAGAA
1 TTTAGACAAAAAAAAATCAAACTTTAATATAAAAATAATTGCTAAATTTAGAGAA
86610562 CGAAACCAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
57 25 0.53
58 17 0.36
59 5 0.11
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (59 bp):
TTTAGACAAAAAAAAATCAAACTTTAATATAAAAATAATTGCTAAATTTAGAGAATTAA
Found at i:86614373 original size:23 final size:24
Alignment explanation
Indices: 86614344--86614422 Score: 70
Period size: 23 Copynumber: 3.3 Consensus size: 24
86614334 CTCGTTACAT
* *
86614344 GGCTCTTTGTGAGCTTCCTGAT-A
1 GGCTCTTTGTGAACTTCCCGATGA
* * *
86614367 GGCTCTTCGTGATCTTCCCGATGT
1 GGCTCTTTGTGAACTTCCCGATGA
* * *
86614391 GGTTCTTTGTGAACTTCTCGATTA
1 GGCTCTTTGTGAACTTCCCGATGA
86614415 TGGCTCTT
1 -GGCTCTT
86614423 ATGAGGTTCC
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
23 19 0.44
24 18 0.42
25 6 0.14
ACGTcount: A:0.11, C:0.23, G:0.24, T:0.42
Consensus pattern (24 bp):
GGCTCTTTGTGAACTTCCCGATGA
Found at i:86617077 original size:40 final size:37
Alignment explanation
Indices: 86617011--86617145 Score: 152
Period size: 35 Copynumber: 3.7 Consensus size: 37
86617001 CATGGCAAAG
86617011 TGTGAAATGTAGGTATGGTA--TCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
86617046 TGTGAAATGTAGGTATGGTATTATCAAATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATT-TC--ATCCATACTGAGT
** * ** *
86617086 TAAGAAACGTAGGTATGCCATTTC--CCATACCGAGT
1 TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
*
86617121 TGTAAAATGTAGGTATGGTATTTCA
1 TGTGAAATGTAGGTATGGTATTTCA
86617146 ATGAGGAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 11
0.78 0.11 0.10
Matches are distributed among these distances:
35 48 0.59
38 2 0.02
39 2 0.02
40 30 0.37
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (37 bp):
TGTGAAATGTAGGTATGGTATTTCATCCATACTGAGT
Found at i:86621806 original size:50 final size:50
Alignment explanation
Indices: 86621747--86621923 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
86621737 CCATGGCAAC
86621747 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
86621797 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
86621847 AAGTGATAAGTGATAGCTTTGGCTACACTTATCTGATCAATGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
86621897 CAAGTGAAAAGTGGTAGCTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
86621924 CTGATCAGTG
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 93 0.80
51 23 0.20
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:86621937 original size:31 final size:31
Alignment explanation
Indices: 86621899--86622078 Score: 281
Period size: 31 Copynumber: 5.8 Consensus size: 31
86621889 ACAAATAACA
86621899 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
**
86621930 AGTGAAAAGTGGTAGCTTCTACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
86621961 AGTGAAAAGTGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
86621992 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
86622023 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
86622054 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
86622079 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
30 1 0.01
31 134 0.98
32 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:86622150 original size:46 final size:49
Alignment explanation
Indices: 86622100--86622236 Score: 183
Period size: 49 Copynumber: 2.8 Consensus size: 49
86622090 GATTTCCGCA
* * * *
86622100 TAAGACCATATCTGGGATATGGCATC-A-GTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGAGATATGTGATTACATG
*
86622146 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATTACATG
1 TAAGACCATAGCTGGGCTATGGCATCAATATGAGATATGTGATTACATG
86622195 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-ATATGTG
1 TAAGACCATAGCTGGGCTATGGCATC-A-ATATGAGATATGTG
86622237 TAAGACCATA
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
46 24 0.30
47 1 0.01
48 13 0.16
49 29 0.36
50 8 0.10
51 5 0.06
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (49 bp):
TAAGACCATAGCTGGGCTATGGCATCAATATGAGATATGTGATTACATG
Found at i:86622207 original size:49 final size:47
Alignment explanation
Indices: 86622100--86622263 Score: 182
Period size: 49 Copynumber: 3.6 Consensus size: 47
86622090 GATTTCCGCA
* * * * *
86622100 TAAGACCATATCTGGGATATGGCATCA-GTGAGATATGTGATTCGTG
1 TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCATG
86622146 TAAGACCATAGCTGGGCTATGGCATCAATATGTGATATGTGATTACATG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATT-CATG
* *
86622195 TAAGACCATAGCTGGGCTATGGCATCGATATATGA-A--T-A-T-GTG
1 TAAGACCATAGCTGGGCTATGGCATC-ATATGTGATATGTGATTCATG
86622237 TAAGACCATAG-TGGGCTATGGCATCAT
1 TAAGACCATAGCTGGGCTATGGCATCAT
86622264 TATCTGAAGA
Statistics
Matches: 107, Mismatches: 8, Indels: 12
0.84 0.06 0.09
Matches are distributed among these distances:
40 2 0.02
41 14 0.13
42 13 0.12
44 1 0.01
45 1 0.01
46 25 0.23
47 1 0.01
48 14 0.13
49 36 0.34
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (47 bp):
TAAGACCATAGCTGGGCTATGGCATCATATGTGATATGTGATTCATG
Found at i:86622277 original size:41 final size:41
Alignment explanation
Indices: 86622193--86622304 Score: 154
Period size: 41 Copynumber: 2.7 Consensus size: 41
86622183 TGTGATTACA
*
86622193 TGTAAGACCATAGCTGGGCTATGGCATCGATATATGAATATG
1 TGTAAGACCATAGCTGGGCTATGGCATC-ATATATGAAGATG
*
86622235 TGTAAGACCATAG-TGGGCTATGGCATCATTATCTGAAGATG
1 TGTAAGACCATAGCTGGGCTATGGCATCA-TATATGAAGATG
* **
86622276 TGTAAGACCATAGTTGAACTATGGCATCA
1 TGTAAGACCATAGCTGGGCTATGGCATCA
86622305 GAAAATGAAG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
40 1 0.02
41 37 0.58
42 26 0.41
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATAGCTGGGCTATGGCATCATATATGAAGATG
Found at i:86627052 original size:50 final size:50
Alignment explanation
Indices: 86626981--86627157 Score: 246
Period size: 50 Copynumber: 3.5 Consensus size: 50
86626971 CCATGACAAC
* * *
86626981 AAGTGATAAATGATAGATTCGGCTACACTTATCTAATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
86627031 AAGTGATAAGTAATAGCTTCGGCTACACTTACCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
86627081 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATAA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
86627131 CAAGTGAAAAGTGGTAGCTTCCGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
86627158 CTGATCAGTG
Statistics
Matches: 112, Mismatches: 14, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 89 0.79
51 23 0.21
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:86627311 original size:31 final size:31
Alignment explanation
Indices: 86627133--86627312 Score: 247
Period size: 31 Copynumber: 5.8 Consensus size: 31
86627123 ACAAATAACA
*
86627133 AGTGAAAAGTGGTAGCTTCCGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
**
86627164 AGTGAAAAGTGGTAGCTTCTACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
86627195 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
86627226 AGTGAAAAGTGGTAGCTCCGACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
86627257 AGTGAAAAATGGTAGC-TCTGGCTACCCGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
86627288 AGTGAATAA-TGGTAGCTTCGGCTAC
1 AGTGAA-AAGTGGTAGCTTCGGCTAC
86627313 AAGTAACAAG
Statistics
Matches: 134, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
30 1 0.01
31 129 0.96
32 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:86627437 original size:49 final size:48
Alignment explanation
Indices: 86627365--86627495 Score: 184
Period size: 49 Copynumber: 2.8 Consensus size: 48
86627355 GCATCAGTGA
*
86627365 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCAATATGT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCAATATAT
* *
86627413 GATATGTGATTACGTGTAAAACCATAGCTGGGCTATGGCATCGATATAT
1 GATATGTGATT-CGTGTAAGACCATAGCTGGGCTATGGCATCAATATAT
86627462 GA-A--T-A-T-GTGTAAGACCATAGCTGGGCTATGGCAT
1 GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCAT
86627496 TATTATCTGA
Statistics
Matches: 78, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
42 27 0.35
44 1 0.01
45 1 0.01
46 1 0.01
48 12 0.15
49 36 0.46
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.30
Consensus pattern (48 bp):
GATATGTGATTCGTGTAAGACCATAGCTGGGCTATGGCATCAATATAT
Found at i:86627472 original size:42 final size:43
Alignment explanation
Indices: 86627377--86627538 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 43
86627367 TATGTGATTC
* *
86627377 GTGTAAGACCATAGCTGGGCTATGGCATCAATATGTGATATG-TGATT
1 GTGTAAGACCATAGCTGGGCTATGGCATC--GAT-T-ATATGAAGA-T
* *
86627424 ACGTGTAAAACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 --GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* *
86627468 GTGTAAGACCATAGCTGGGCTATGGCAT-TATTATCTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
86627510 GTGTAAGACCATAGTTGAACTATGGCATC
1 GTGTAAGACCATAGCTGGGCTATGGCATC
86627539 AAGAAAACGA
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
41 1 0.01
42 61 0.62
44 6 0.06
45 2 0.02
47 1 0.01
49 28 0.28
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:86629312 original size:23 final size:20
Alignment explanation
Indices: 86629262--86629301 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
86629252 AAGTAGTGAG
*
86629262 AATT-TATTTTCTATGAATA
1 AATTCTATTTTCTAAGAATA
86629281 AATTCTATTTTCTAAGAATA
1 AATTCTATTTTCTAAGAATA
86629301 A
1 A
86629302 TAATTTCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.47
Consensus pattern (20 bp):
AATTCTATTTTCTAAGAATA
Found at i:86633736 original size:29 final size:29
Alignment explanation
Indices: 86633700--86633766 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
86633690 AGCCCTTTTC
*
86633700 TCACCATGTTGAAATTGTAGGGGTTCTTT
1 TCACCATGTTGAAATTGTAAGGGTTCTTT
*
86633729 TCACCATGTTGAAGTTGTAAGGGTTCTTT
1 TCACCATGTTGAAATTGTAAGGGTTCTTT
86633758 TCACCATGT
1 TCACCATGT
86633767 AGATGTCACA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.40
Consensus pattern (29 bp):
TCACCATGTTGAAATTGTAAGGGTTCTTT
Found at i:86633851 original size:70 final size:70
Alignment explanation
Indices: 86633730--86633950 Score: 212
Period size: 70 Copynumber: 3.2 Consensus size: 70
86633720 GGGTTCTTTT
* ** * *
86633730 CACCATGTTGAAGTTGTAAGGGTTCTTTTCACCATGTAGATGTCACAAAGTTTGGAATGGGAGC-
1 CACCATGTTAAAGTTGTAAGGGTTCTTCCCACCATGTAGATGTCACAAAGTTCGGAATGGG-CCA
86633794 TCCTCG
65 TCCTCG
* * * * *
86633800 CACCATGTTAAAGTTGTAAGGTTTCTTCCCACCATTTTGATGTTACGAAGTTCGGAATGGGCCAT
1 CACCATGTTAAAGTTGTAAGGGTTCTTCCCACCATGTAGATGTCACAAAGTTCGGAATGGGCCAT
*
86633865 CCTCT
66 CCTCG
* **** * * * *
86633870 CACCATGTTAAAGTTGCAAGGGTTCTTTATGCCATGTTA-ATGTTACAAAGTTGGGAATGAGCCC
1 CACCATGTTAAAGTTGTAAGGGTTCTTCCCACCATG-TAGATGTCACAAAGTTCGGAATGGGCCA
* *
86633934 TCGTCT
65 TCCTCG
86633940 CACCATGTTAA
1 CACCATGTTAA
86633951 CCGGTCATTA
Statistics
Matches: 125, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
69 1 0.01
70 123 0.98
71 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (70 bp):
CACCATGTTAAAGTTGTAAGGGTTCTTCCCACCATGTAGATGTCACAAAGTTCGGAATGGGCCAT
CCTCG
Found at i:86635181 original size:23 final size:21
Alignment explanation
Indices: 86635130--86635181 Score: 52
Period size: 23 Copynumber: 2.4 Consensus size: 21
86635120 GTTTGTGTTT
*
86635130 TATTTTT-GTTTATTTATTTC
1 TATTTTTAGTTTATATATTTC
*
86635150 AATTCTTTAGTTTATGATATTATC
1 TATT-TTTAGTTTAT-ATATT-TC
86635174 TATTTTTA
1 TATTTTTA
86635182 TTGTTTGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 3 0.12
21 3 0.12
22 6 0.24
23 8 0.32
24 5 0.20
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.65
Consensus pattern (21 bp):
TATTTTTAGTTTATATATTTC
Found at i:86635533 original size:35 final size:35
Alignment explanation
Indices: 86635494--86635603 Score: 90
Period size: 29 Copynumber: 3.1 Consensus size: 35
86635484 TCCTTTTGCC
86635494 ATGTTGAAGTTGCAAGTGTTCTTCTCACCATGTTG
1 ATGTTGAAGTTGCAAGTGTTCTTCTCACCATGTTG
*
86635529 ATGTTGCGAAGTTTG-AAATGGTTCCTTCTCTCACCATGTT-
1 ATGTT--GAAG-TTGCAAGT-GTT-C-T-TCTCACCATGTTG
*
86635569 A-----AAGTTGCAAGGGTTCTTCTCACCATGTTG
1 ATGTTGAAGTTGCAAGTGTTCTTCTCACCATGTTG
86635599 ATGTT
1 ATGTT
86635604 ACAAAGTTCA
Statistics
Matches: 59, Mismatches: 3, Indels: 27
0.66 0.03 0.30
Matches are distributed among these distances:
29 12 0.20
30 2 0.03
31 1 0.02
32 6 0.10
33 5 0.08
35 5 0.08
37 7 0.12
38 6 0.10
39 1 0.02
40 2 0.03
41 12 0.20
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (35 bp):
ATGTTGAAGTTGCAAGTGTTCTTCTCACCATGTTG
Found at i:86635541 original size:70 final size:69
Alignment explanation
Indices: 86635449--86635760 Score: 277
Period size: 70 Copynumber: 4.5 Consensus size: 69
86635439 AACTTTTTCC
* * ** * *
86635449 CACCATGTTGATGGTGCAAAGTTCGAAATGGGCCTTCCTTTTGCCATGTTGAAGTTGCAAGTGTT
1 CACCATGTTGATGTTGCAAAGTTCGAAATGGGCCTT-CTCTCACCATGTTAAAGTTGCAAGGGTT
86635514 CTTCT
65 CTTCT
* * *
86635519 CACCATGTTGATGTTGCGAAGTTTGAAATGGTTCCTTCTCTCACCATGTTAAAGTTGCAAGGGTT
1 CACCATGTTGATGTTGCAAAGTTCGAAATGG-GCCTTCTCTCACCATGTTAAAGTTGCAAGGGTT
86635584 CTTCT
65 CTTCT
* * * * *
86635589 CACCATGTTGATGTTACAAAGTTC-AGAATGGGCCCTTGTCCCACCATGTTAAAGTTGTAAAGGT
1 CACCATGTTGATGTTGCAAAGTTCGA-AATGGG-CCTTCTCTCACCATGTTAAAGTTGCAAGGGT
86635653 TCTT-T
64 TCTTCT
* * * * ** * * * *
86635658 CCGCCATGTTAATGATGCAAGGTTTAAAATGGGCCCTCCTCTCACCATTTTGAAGTTGTAAGGGT
1 -CACCATGTTGATGTTGCAAAGTTCGAAATGGG-CCTTCTCTCACCATGTTAAAGTTGCAAGGGT
* *
86635723 TTTTCC
64 TCTTCT
* * * * *
86635729 CACCATGTTAAAGATGCAGAGTTCAAAATGGG
1 CACCATGTTGATGTTGCAAAGTTCGAAATGGG
86635761 TTCTCCATTC
Statistics
Matches: 200, Mismatches: 36, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
69 2 0.01
70 193 0.96
71 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (69 bp):
CACCATGTTGATGTTGCAAAGTTCGAAATGGGCCTTCTCTCACCATGTTAAAGTTGCAAGGGTTC
TTCT
Found at i:86635604 original size:35 final size:35
Alignment explanation
Indices: 86635494--86635604 Score: 86
Period size: 35 Copynumber: 3.2 Consensus size: 35
86635484 TCCTTTTGCC
* *
86635494 ATGTTGAAGTTGCAAGTGTTCTTCTCACCATGTTG
1 ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
* * * * **
86635529 ATGTTGCGAAGTTTGAAATGGTTCCTTCTC-TCA---CC
1 ATGTT--AAAG-TTGCAAGGGTT-CTTCTCACCATGTTG
86635564 ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
1 ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
86635599 ATGTTA
1 ATGTTA
86635605 CAAAGTTCAG
Statistics
Matches: 56, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
31 6 0.11
32 11 0.20
33 3 0.05
35 16 0.29
37 4 0.07
38 10 0.18
39 6 0.11
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.39
Consensus pattern (35 bp):
ATGTTAAAGTTGCAAGGGTTCTTCTCACCATGTTG
Found at i:86647703 original size:23 final size:23
Alignment explanation
Indices: 86647676--86647742 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
86647666 AATATAATTT
86647676 AACTTATAGAAATTAACTTTTAC
1 AACTTATAGAAATTAACTTTTAC
* * * * **
86647699 AACTTTTACAATTTAGTCTTTTTT
1 AACTTATAGAAATTA-ACTTTTAC
*
86647723 TACTTATAGAAATTAACTTT
1 AACTTATAGAAATTAACTTT
86647743 GGCAAACATT
Statistics
Matches: 32, Mismatches: 11, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
23 16 0.50
24 16 0.50
ACGTcount: A:0.36, C:0.12, G:0.04, T:0.48
Consensus pattern (23 bp):
AACTTATAGAAATTAACTTTTAC
Found at i:86649488 original size:25 final size:25
Alignment explanation
Indices: 86649460--86649532 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
86649450 TCATACTCCA
86649460 TTAAATAGTTCAGGTTTTACCATAC
1 TTAAATAGTTCAGGTTTTACCATAC
** *
86649485 TT-AA-A--TCA-AATTGA--ATA-
1 TTAAATAGTTCAGGTTTTACCATAC
86649502 TTAAATAGTTCAGGTTTTACCATAC
1 TTAAATAGTTCAGGTTTTACCATAC
86649527 TTAAAT
1 TTAAAT
86649533 CAAATTGAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 16
0.61 0.11 0.29
Matches are distributed among these distances:
17 2 0.06
18 5 0.15
19 1 0.03
20 3 0.09
21 6 0.18
22 3 0.09
23 1 0.03
24 5 0.15
25 8 0.24
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (25 bp):
TTAAATAGTTCAGGTTTTACCATAC
Found at i:86649518 original size:42 final size:42
Alignment explanation
Indices: 86649459--86649542 Score: 168
Period size: 42 Copynumber: 2.0 Consensus size: 42
86649449 TTCATACTCC
86649459 ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
1 ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
86649501 ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
1 ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
86649543 TTAGTTAATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (42 bp):
ATTAAATAGTTCAGGTTTTACCATACTTAAATCAAATTGAAT
Found at i:86652541 original size:7 final size:7
Alignment explanation
Indices: 86652529--86652553 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
86652519 ATACAACTCA
86652529 TTTTCTT
1 TTTTCTT
86652536 TTTTCTT
1 TTTTCTT
86652543 TTTTCTT
1 TTTTCTT
86652550 TTTT
1 TTTT
86652554 TACATTCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTCTT
Found at i:86654475 original size:20 final size:20
Alignment explanation
Indices: 86654450--86654511 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
86654440 AGGAGCCTTT
86654450 AAATCAATTTGAATAAAATC
1 AAATCAATTTGAATAAAATC
86654470 AAATCAATTTG---AAAATC
1 AAATCAATTTGAATAAAATC
* *
86654487 -AATCTGATTGGAATAAAATC
1 AAATC-AATTTGAATAAAATC
86654507 AAATC
1 AAATC
86654512 GAGATATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 4 0.11
17 10 0.29
20 17 0.49
21 4 0.11
ACGTcount: A:0.52, C:0.11, G:0.08, T:0.29
Consensus pattern (20 bp):
AAATCAATTTGAATAAAATC
Found at i:86658880 original size:5 final size:6
Alignment explanation
Indices: 86658865--86658894 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
86658855 ATATTTTGAA
*
86658865 AAAAAT AAAAAT AAAAAT AAAAAC AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
86658895 TCACTTGGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:86672244 original size:30 final size:30
Alignment explanation
Indices: 86672210--86672269 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
86672200 AAATTTTTTT
* * *
86672210 AAAAGACTAAAAGTCAAATTAAACAAAATA
1 AAAAGAATAAAAATCAAATTAAAAAAAATA
*
86672240 AAAAGAATAAAAATTAAATTAAAAAAAATA
1 AAAAGAATAAAAATCAAATTAAAAAAAATA
86672270 TAAACATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.72, C:0.05, G:0.05, T:0.18
Consensus pattern (30 bp):
AAAAGAATAAAAATCAAATTAAAAAAAATA
Found at i:86693163 original size:57 final size:57
Alignment explanation
Indices: 86693093--86693204 Score: 199
Period size: 57 Copynumber: 2.0 Consensus size: 57
86693083 TGGTGTAGCA
*
86693093 GATTAAATTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTT-AGTTATATTTT
1 GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTCA-TTATATTTT
86693150 GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTCATTATATT
1 GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTCATTATATT
86693205 CTAATTCAGT
Statistics
Matches: 53, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
57 52 0.98
58 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.13, T:0.42
Consensus pattern (57 bp):
GATTAAACTAGTTTTCACATTTAAGGAGCTTGAATACAAGAATTTTCATTATATTTT
Found at i:86699206 original size:35 final size:35
Alignment explanation
Indices: 86699039--86699210 Score: 233
Period size: 35 Copynumber: 4.9 Consensus size: 35
86699029 TTATGACATA
*
86699039 TAGGTATGGTATTATCCATACTGAGTTATGACACG
1 TAGGTATGGTATTATCCATACTGAGTTATGAAACG
* *
86699074 TAAGTATGGTATTATCCATACTGAGTTATGATACG
1 TAGGTATGGTATTATCCATACTGAGTTATGAAACG
86699109 TAGGTATGGTATTATCCATACTGA-TCTAT-AATACG
1 TAGGTATGGTATTATCCATACTGAGT-TATGAA-ACG
* *
86699144 TAGGTATGGTATT-TCCCATACCGAGTTGTGAAACG
1 TAGGTATGGTATTAT-CCATACTGAGTTATGAAACG
* *
86699179 TAGGTATGGTATTAACCATACTGAGTTGTGAA
1 TAGGTATGGTATTATCCATACTGAGTTATGAA
86699211 TTGTGGCACT
Statistics
Matches: 123, Mismatches: 8, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
34 3 0.02
35 117 0.95
36 3 0.02
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (35 bp):
TAGGTATGGTATTATCCATACTGAGTTATGAAACG
Found at i:86703708 original size:47 final size:47
Alignment explanation
Indices: 86703651--86703742 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 47
86703641 ATTAGCTATT
* * *
86703651 ATACAAAACATTTAACACATACAAAGTCATATTAATTTTCTCTTTGA
1 ATACAAAACATATAACACATACAAAGTCATATTAACTTACTCTTTGA
* * *
86703698 ATACATAACATATATCACATACAGAGTCATATTAACTTACTCTTT
1 ATACAAAACATATAACACATACAAAGTCATATTAACTTACTCTTT
86703743 TCAAATCATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 39 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.36
Consensus pattern (47 bp):
ATACAAAACATATAACACATACAAAGTCATATTAACTTACTCTTTGA
Found at i:86720691 original size:20 final size:20
Alignment explanation
Indices: 86720668--86720711 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
86720658 TATACTTTTG
86720668 TACCTTTATCAAAATATCAA
1 TACCTTTATCAAAATATCAA
* **
86720688 TACCTTTATCCAGGTATCAA
1 TACCTTTATCAAAATATCAA
86720708 TACC
1 TACC
86720712 ATTTTACTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (20 bp):
TACCTTTATCAAAATATCAA
Found at i:86733374 original size:2 final size:2
Alignment explanation
Indices: 86733351--86733402 Score: 70
Period size: 2 Copynumber: 26.5 Consensus size: 2
86733341 TTTGTTGCCT
* * *
86733351 TA TA TA AA TA AA T- TA TA CA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
86733392 TA TA TA TA TA T
1 TA TA TA TA TA T
86733403 CTAGAAAAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:86733866 original size:21 final size:23
Alignment explanation
Indices: 86733840--86733883 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
86733830 TTAATTATAG
86733840 AATAAA-TTATTAATTT-TTATT
1 AATAAATTTATTAATTTATTATT
*
86733861 AATAAATTTATTTATTTATTATT
1 AATAAATTTATTAATTTATTATT
86733884 GGGAATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 9 0.45
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
AATAAATTTATTAATTTATTATT
Found at i:86733891 original size:26 final size:23
Alignment explanation
Indices: 86733834--86733884 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
86733824 TATTTCTTAA
*
86733834 TTATAGAATAAA-TTATTAATTT
1 TTATTGAATAAATTTATTAATTT
*
86733856 TTATT-AATAAATTTATTTATTT
1 TTATTGAATAAATTTATTAATTT
86733878 ATTATTG
1 -TTATTG
86733885 GGAATAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 6 0.25
22 13 0.54
23 5 0.21
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (23 bp):
TTATTGAATAAATTTATTAATTT
Found at i:86740719 original size:3 final size:3
Alignment explanation
Indices: 86740711--86740774 Score: 128
Period size: 3 Copynumber: 21.3 Consensus size: 3
86740701 GTTATTACAT
86740711 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
86740759 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
86740775 AGGAACGCAC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:86741811 original size:6 final size:6
Alignment explanation
Indices: 86741792--86741901 Score: 73
Period size: 6 Copynumber: 18.8 Consensus size: 6
86741782 ACTTGCACAT
** * *
86741792 TTATTG TTCGTG TTATTG TTATTG ---TTG TTATTG TTGTTG TTGTTG
1 TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG
* * * * * * * *
86741837 TTGTTG TTGTTG TTGTTG TTGTTG TTGTTG TTGTTG TTATTA TTATTA
1 TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG TTATTG
* *
86741885 TTATTA TTATTA TTATT
1 TTATTG TTATTG TTATT
86741902 ATACATTCAT
Statistics
Matches: 94, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
3 3 0.03
6 91 0.97
ACGTcount: A:0.12, C:0.01, G:0.21, T:0.66
Consensus pattern (6 bp):
TTATTG
Found at i:86741828 original size:3 final size:3
Alignment explanation
Indices: 86741802--86741874 Score: 119
Period size: 3 Copynumber: 24.3 Consensus size: 3
86741792 TTATTGTTCG
* * *
86741802 TGT TAT TGT TAT TGT TGT TAT TGT TGT TGT TGT TGT TGT TGT TGT TGT
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT
86741850 TGT TGT TGT TGT TGT TGT TGT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT T
86741875 ATTATTATTA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.04, C:0.00, G:0.29, T:0.67
Consensus pattern (3 bp):
TGT
Found at i:86741921 original size:3 final size:3
Alignment explanation
Indices: 86741873--86741903 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
86741863 GTTGTTGTTG
86741873 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
86741904 ACATTCATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:86756729 original size:50 final size:50
Alignment explanation
Indices: 86756656--86757043 Score: 436
Period size: 50 Copynumber: 7.7 Consensus size: 50
86756646 TGAGAACACA
* * *** * * *
86756656 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACG
* * * *
86756706 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAAATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACG
* * ** * * *
86756756 CGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGA-TAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGA--TAGGTCACG
* * * *
86756807 TGTGTAGTACTAAGTGCAGACTACTACGTATATCAGATGGATAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACG
* * * *
86756857 GGTGTAGTACTAAGTGCAGGATACTACGTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACG
* * *
86756907 TGTGTAGTACTACGTGCAGGCTACTACATGTATCAGATTGATAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACG
* * *
86756957 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACG
* *
86757007 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
86757044 AAGCTTCGGT
Statistics
Matches: 279, Mismatches: 56, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
49 2 0.01
50 239 0.86
51 37 0.13
52 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCACG
Found at i:86757077 original size:100 final size:100
Alignment explanation
Indices: 86756807--86757077 Score: 267
Period size: 100 Copynumber: 2.7 Consensus size: 100
86756797 TTCGATCACG
* *** * **
86756807 TGTGTAGTACTAAGTGCAGACTACTACGTATATCAGATGGATAGGTCACG-GGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGAAAGATAGGTCACGAGG-GTAGTACTAAG
** * *
86756871 TGCAGGATACTACGTGTACCAGATTGATAGGTCGCA
65 CACAGGCTACTACGTGTACCAAATTGATAGGTCGCA
* * * ** * * *
86756907 TGTGTAGTACTACGTGCAGGCTACTACATGTATCAGATTGATAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGAAAGATAGGTCACGAGGGTAGTACTAAGC
*
86756972 GCAGGCTACTACGTGTACCAAATTGATAGGTCGCA
66 ACAGGCTACTACGTGTACCAAATTGATAGGTCGCA
** * * * * *
86757007 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAAAGCTTCGGTTACGAGGGTGGTA-TATG
1 TGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGAAAG-ATAGGTCACGAGGGTAGTACTAAG
86757071 CACAGGC
65 CACAGGC
86757078 CAGTAGGTAT
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
100 131 0.90
101 14 0.10
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.27
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGAAAGATAGGTCACGAGGGTAGTACTAAGC
ACAGGCTACTACGTGTACCAAATTGATAGGTCGCA
Found at i:86757264 original size:16 final size:16
Alignment explanation
Indices: 86757243--86757274 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86757233 AGAATGGAGT
86757243 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
86757259 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
86757275 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:86757955 original size:180 final size:180
Alignment explanation
Indices: 86757606--86757958 Score: 494
Period size: 180 Copynumber: 2.0 Consensus size: 180
86757596 AGAGCTGTAT
* *
86757606 CATGAGATAAATAATTTTTAGTGAAGAAAGGTCGGAACTATCAGACAGTGAAATAGGGGTATATT
1 CATGAGATAAATAATTTTTAGTGAAGAAAGGTCAGAACTATCAGACAGTGAAACAGGGGTATATT
* * * *
86757671 TAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTTTTAAAATTTTATGGTAAGAATATATG
66 TAACGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATATATA
* * * *
86757736 TGACTCTAGTTTCTGGGAAAATTATCAGTTCTCAATTTGGAGTCCCATAC
131 TGACTCTAGTTTCAGAGAAAATTAACAGATCTCAATTTGGAGTCCCATAC
* * * * * *
86757786 CATGATATAAATAATTTTTGGTGAAGAGAGGTCAGAACTGTTAGACAGTGAAACAGGGGTATTTT
1 CATGAGATAAATAATTTTTAGTGAAGAAAGGTCAGAACTATCAGACAGTGAAACAGGGGTATATT
* *
86757851 TAACGAATAAACTGTACTTATTGGCTAAACCAAAAATTCTGAAGATTTTATGGTAAGAATATATA
66 TAACGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATATATA
* *
86757916 TGAGTCTAGTTTCAGA-AGAAATTAACGGATCGT-AATTTGGAGT
131 TGACTCTAGTTTCAGAGA-AAATTAACAGATC-TCAATTTGGAGT
86757959 TTTTTAGCTC
Statistics
Matches: 151, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
179 1 0.01
180 149 0.99
181 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.20, T:0.32
Consensus pattern (180 bp):
CATGAGATAAATAATTTTTAGTGAAGAAAGGTCAGAACTATCAGACAGTGAAACAGGGGTATATT
TAACGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAGAATATATA
TGACTCTAGTTTCAGAGAAAATTAACAGATCTCAATTTGGAGTCCCATAC
Found at i:86762774 original size:14 final size:14
Alignment explanation
Indices: 86762755--86762786 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
86762745 ATTTCTCCCT
*
86762755 TTTCTTTTTCTTTC
1 TTTCTTTTTCCTTC
86762769 TTTCTTTTTCCTTC
1 TTTCTTTTTCCTTC
86762783 TTTC
1 TTTC
86762787 CTTCCCCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTCTTTTTCCTTC
Found at i:86762860 original size:2 final size:2
Alignment explanation
Indices: 86762853--86762887 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
86762843 TCAGTTACTT
*
86762853 TA TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86762888 TTAATTCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:86766271 original size:45 final size:44
Alignment explanation
Indices: 86766169--86766575 Score: 320
Period size: 45 Copynumber: 9.1 Consensus size: 44
86766159 ATGGCGAATT
* * *
86766169 TTATCTCCCTCAAGTT-CTAGTGGAGTAGATT-AAAACCACAAATC
1 TTATCTCCCTGAAGTTGC-AGTGGAGCAGATTGAAAA-TACAAATC
* * ** * *
86766213 TTATCACCTTGAAGTTATAGTGGAGTAGATTGAAAATAGCAAATT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATA-CAAATC
* * *
86766258 TTATCTCCCTGAAGTTACAGTAGAGCAGATT-AAAGTTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATACAAATC
* * * *
86766302 TTCTCTCCCTGAAGTTGCAGTAGG-GCACATTGAAGATAGAAAATC
1 TTATCTCCCTGAAGTTGCAGT-GGAGCAGATTGAAAATA-CAAATC
* * * * * **
86766347 TTATCTCTCTAAATTTGTAGTAGAGCAGATTGAAGTTACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATACAAATC
* ** *
86766391 TTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAGCCAAAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-ATACAAATC
* * * * *
86766436 TTATCTTCTTGAAGTTTCAATGGAGCAGATTGAAAATAGCAAATA
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATA-CAAATC
* * * * * *
86766481 TTATCTTCCTAAAGTTGCAGTAGAGCAAATT-AAAACCATAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA-TACAAATC
* **
86766525 TTATCTCCCTGAAGTTGCAGTGGAGTAGATTGATGATAACAAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAAT-ACAAATC
86766570 TTATCT
1 TTATCT
86766576 TTTTGATGTT
Statistics
Matches: 285, Mismatches: 65, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
44 131 0.46
45 154 0.54
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.31
Consensus pattern (44 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATACAAATC
Found at i:86766301 original size:89 final size:88
Alignment explanation
Indices: 86766165--86766425 Score: 290
Period size: 89 Copynumber: 2.9 Consensus size: 88
86766155 TATTATGGCG
* * * *** * *
86766165 AATTTTATCTCCCTCAAGTTCTAGTGGAGTAGATTAAAACCACAAATCTTATCACCTTGAAGTTA
1 AATTTTATCTCCCTAAAGTTC-AGTAGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTA
* * *
86766230 TAGTGGAGTAGATTGAAAATAGCA
65 CAGTGGAGCAGATTGAAAATAGAA
* * *
86766254 AATTTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTACAAATCTTCTCTCCCTGAAGTTG
1 AATTTTATCTCCCTAAAGTT-CAGTAGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTA
* *
86766319 CAGTAGG-GCACATTGAAGATAGAA
65 CAGT-GGAGCAGATTGAAAATAGAA
* * * * *
86766343 AATCTTATCTCTCTAAATTTGTAGTAGAGCAGATTGAAGTTACAAATCTTATCTCCCTGAAGTTA
1 AATTTTATCTCCCTAAAGTT-CAGTAGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTA
86766408 CAGTGGAGCAGATTGAAA
65 CAGTGGAGCAGATTGAAA
86766426 GCCAAAAATC
Statistics
Matches: 143, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
88 2 0.01
89 138 0.97
90 3 0.02
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (88 bp):
AATTTTATCTCCCTAAAGTTCAGTAGAGCAGATTAAAGTTACAAATCTTATCTCCCTGAAGTTAC
AGTGGAGCAGATTGAAAATAGAA
Found at i:86766434 original size:89 final size:90
Alignment explanation
Indices: 86766206--86766575 Score: 313
Period size: 89 Copynumber: 4.1 Consensus size: 90
86766196 GATTAAAACC
* * * * * * * *
86766206 ACAAATCTTATCACCTTGAAGTTATAGTGGAGTAGATTGAAA-ATAGCAAATTTTATCTCCCTGA
1 ACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAGACAGAAAATCTTATCTCCCTAA
* *
86766270 AGTTACAGTAGAGCAGATTAAAGTT
66 AGTTGCAGTAGAGCAGATTGAAGTT
* * * * *
86766295 ACAAATCTTCTCTCCCTGAAGTTGCAGTAGG-GCACATTG-AAGATAGAAAATCTTATCTCTCTA
1 ACAAATCTTATCTCCCTGAAGTTACAGT-GGAGCAGATTGAAAGACAGAAAATCTTATCTCCCTA
* *
86766358 AATTTGTAGTAGAGCAGATTGAAGTT
65 AAGTTGCAGTAGAGCAGATTGAAGTT
* * * *
86766384 ACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAGCCA-AAAATCTTATCTTCTTGA
1 ACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAGACAGAAAATCTTATCTCCCTAA
* * * **
86766448 AGTTTCAATGGAGCAGATTGAAAAT
66 AGTTGCAGTAGAGCAGATTGAAGTT
* * * * * * *
86766473 AGCAAATATTATCTTCCTAAAGTTGCAGTAGAGCAAATT-AAA-ACCA-TAAATCTTATCTCCCT
1 A-CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAGA-CAGAAAATCTTATCTCCCT
* * * * *
86766535 GAAGTTGCAGTGGAGTAGATTGATGATA
64 AAAGTTGCAGTAGAGCAGATTGAAG-TT
86766563 ACAAATCTTATCT
1 ACAAATCTTATCT
86766576 TTTTGATGTT
Statistics
Matches: 225, Mismatches: 49, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
88 4 0.02
89 183 0.81
90 38 0.17
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (90 bp):
ACAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAGACAGAAAATCTTATCTCCCTAA
AGTTGCAGTAGAGCAGATTGAAGTT
Found at i:86766587 original size:89 final size:90
Alignment explanation
Indices: 86766253--86766604 Score: 316
Period size: 89 Copynumber: 3.9 Consensus size: 90
86766243 TGAAAATAGC
* * * * * * *
86766253 AAATTTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAG-TTACAAATCTTCTCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTTCCTGAAGT
* * * *
86766317 TGCAGTAGGGCACATTGAAGA-TAGA
66 TGCAGTAGAGCAAATTGAAAACCA-A
* * * * * * *
86766342 AAATCTTATCTCTCTAAATTTGTAGTAGAGCAGATTGAAG-TTACAAATCTTATCTCCCTGAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTTCCTGAAGT
* * * *
86766406 TACAGTGGAGCAGATTGAAAGCCAA
66 TGCAGTAGAGCAAATTGAAAACCAA
* * * * * * * *
86766431 AAATCTTATCTTCTTGAAGTTTCAATGGAGCAGATTGAAAATAGCAAATATTATCTTCCTAAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTTCCTGAAGT
*
86766496 TGCAGTAGAGCAAATT-AAAACCAT
66 TGCAGTAGAGCAAATTGAAAACCAA
* * ** *
86766520 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGATGATAACAAATCTTATCTTTTTGATGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTTCCTGAAGT
* * *
86766585 TGCAGCAGAGTAGATTGAAA
66 TGCAGTAGAGCAAATTGAAA
86766605 TTACAGTTCC
Statistics
Matches: 209, Mismatches: 51, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
89 173 0.83
90 36 0.17
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (90 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAACAAATCTTATCTTCCTGAAGT
TGCAGTAGAGCAAATTGAAAACCAA
Found at i:86766600 original size:134 final size:133
Alignment explanation
Indices: 86766252--86766604 Score: 377
Period size: 134 Copynumber: 2.6 Consensus size: 133
86766242 TTGAAAATAG
* * * * * * *
86766252 CAAATTTTATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGTTACAAATCTTCTCTCCCTGAAGT
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGTAACAAATCTTATCTTCTTGAAGT
* * * * * * * * *
86766317 TGCAGTAGGGCACATTGAAGATAGAAAATCTTATCTCTCTAAATTTGTAGTAGAGCAGATTGAAG
66 TGCAGTAGAGCAGATTGAAAATAGAAAATATTATCTCTCTAAAGTTGCAGTAGAGCAAATTAAAA
**
86766382 TTA
131 CCA
*
86766385 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAAGCCAA-AAATCTTATCTTCTTGAA
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTG-AAG-TAACAAATCTTATCTTCTTGAA
* * * *
86766449 GTTTCAATGGAGCAGATTGAAAATAGCAAATATTATCT-TCCTAAAGTTGCAGTAGAGCAAATTA
64 GTTGCAGTAGAGCAGATTGAAAATAGAAAATATTATCTCT-CTAAAGTTGCAGTAGAGCAAATTA
86766513 AAACCA
128 AAACCA
* * * * * *
86766519 TAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGATGATAACAAATCTTATCTTTTTGATG
1 CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAG-TAACAAATCTTATCTTCTTGAAG
* *
86766584 TTGCAGCAGAGTAGATTGAAA
65 TTGCAGTAGAGCAGATTGAAA
86766605 TTACAGTTCC
Statistics
Matches: 180, Mismatches: 36, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
133 40 0.22
134 139 0.77
135 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (133 bp):
CAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGTAACAAATCTTATCTTCTTGAAGT
TGCAGTAGAGCAGATTGAAAATAGAAAATATTATCTCTCTAAAGTTGCAGTAGAGCAAATTAAAA
CCA
Found at i:86770967 original size:13 final size:14
Alignment explanation
Indices: 86770951--86770986 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
86770941 CAATCTCATA
86770951 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
86770964 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
86770977 TCTC-ATTTCA
1 TCTCAATTTCA
86770987 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:86770976 original size:18 final size:19
Alignment explanation
Indices: 86770938--86770978 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
86770928 TGGTTCATGT
86770938 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
86770957 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
86770975 TTTC
1 TTTC
86770979 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:86771501 original size:18 final size:19
Alignment explanation
Indices: 86771475--86771513 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
86771465 TTTCAATTCA
86771475 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
86771494 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
86771512 AT
1 AT
86771514 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:86772841 original size:5 final size:5
Alignment explanation
Indices: 86772831--86772883 Score: 70
Period size: 5 Copynumber: 10.0 Consensus size: 5
86772821 TTACTTATTT
*
86772831 ATATA ATATAA TATATA ATATA ATATA ATATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
86772879 ATATA
1 ATATA
86772884 TATTTTAACA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 32 0.74
6 7 0.16
7 4 0.09
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:86772847 original size:12 final size:12
Alignment explanation
Indices: 86772830--86772885 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
86772820 TTTACTTATT
86772830 TATATAATATAA
1 TATATAATATAA
86772842 TATATAATATAATA
1 TATATAATAT-A-A
86772856 TAATATAATATAA
1 T-ATATAATATAA
*
86772869 TA-ATAATTTAA
1 TATATAATATAA
86772880 TATATA
1 TATATA
86772886 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 14 0.36
13 3 0.08
14 3 0.08
15 9 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:86773899 original size:45 final size:44
Alignment explanation
Indices: 86773843--86774265 Score: 281
Period size: 45 Copynumber: 9.4 Consensus size: 44
86773833 TTAGACGGGG
* *
86773843 AGCAAATCGAAGATAGCAGATCTAACATTCATGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * *
86773888 AGCAGATCGAAGAT-GACAGATTTGGCA-TCTTTGTATTAGATGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACATTCTGTGT-TTACAT-CGA
*
86773933 AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * *
86773978 AGCAGATCGAAGAT-GACAGATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAG-CAGATCTGACAT-TCTGTGTTTACATC--GA
86774023 AGCAGATCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * * * *
86774068 AGCAAATCGAAGATAACAGATTTGGCGTCTCTGT-ATTAGA-CGGGG
1 AGCAGATCGAAGATAGCAGATCTGACAT-TCTGTGTTTACATC--GA
* * *
86774113 ACCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTGCATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
* * * * * * ***
86774158 AGCAGATC-AATA-ATGACAGATTTGGCGTCTCTGTATTAGACGGGGA
1 AGCAGATCGAAGATA-G-CAGATCTGACAT-TCTGTGTT-TACATCGA
*
86774204 A-CAGGTCGAAGATAGCAGATCTGACATTCGTGTGTTTACATCGA
1 AGCAGATCGAAGATAGCAGATCTGACATTC-TGTGTTTACATCGA
86774248 AGCAGATCGAAGATAGCA
1 AGCAGATCGAAGATAGCA
86774266 TATTTGGCAT
Statistics
Matches: 281, Mismatches: 69, Indels: 56
0.69 0.17 0.14
Matches are distributed among these distances:
43 7 0.02
44 32 0.11
45 205 0.73
46 30 0.11
47 7 0.02
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (44 bp):
AGCAGATCGAAGATAGCAGATCTGACATTCTGTGTTTACATCGA
Found at i:86773963 original size:90 final size:90
Alignment explanation
Indices: 86773804--86774307 Score: 762
Period size: 90 Copynumber: 5.6 Consensus size: 90
86773794 ATTGAAACAT
* * *
86773804 ATCGAA-ATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAGCAGATCTAA
1 ATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGA
*
86773868 CATTCATGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
86773893 ATCGAAGATGACAGATTTGGCATCTTTGTATTAGATGGGGAGCAGATCAAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGA
*
86773958 CATTCATGTGTTTACATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* *
86773983 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGA
*
86774048 CATTCGTGTGTTTACATCGAAGCAA
66 CATTCGTGTGTTTACATCGAAGCAG
* * *
86774073 ATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGACCAGATCAAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGA
*
86774138 CATTCGTGTGTTTGCATCGAAGCAG
66 CATTCGTGTGTTTACATCGAAGCAG
* * * * *
86774163 ATC-AATAATGACAGATTTGGCGTCTCTGTATTAGACGGGGAACAGGTCGAAGATAGCAGATCTG
1 ATCGAA-GATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTG
86774227 ACATTCGTGTGTTTACATCGAAGCAG
65 ACATTCGTGTGTTTACATCGAAGCAG
* * * *
86774253 ATCGAAGAT-AGCATATTTGGCATCTCTGTATTTGACGGGAAGCAGATCAAGGATA
1 ATCGAAGATGA-CAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATA
86774308 TTAACATGGC
Statistics
Matches: 380, Mismatches: 31, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
89 9 0.02
90 369 0.97
91 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (90 bp):
ATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATCTGA
CATTCGTGTGTTTACATCGAAGCAG
Found at i:86774045 original size:180 final size:180
Alignment explanation
Indices: 86773639--86774307 Score: 888
Period size: 180 Copynumber: 3.8 Consensus size: 180
86773629 CGGGGAATAA
* * * * * *
86773639 ATCGAAGAAG-CAGATTTGACGTTTCTATATTAGATGGGGAGCATATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * * *
86773703 CATTCGTGTG------TCGAAGCAGATCGAAGATGACAGATGTGACGTCTCTGTATTAGACGGAG
66 CATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
* * * * *
86773762 AGTAGATCGAAGATAGCAGATCTGACATT-A-------ACATTGAAACAT
131 AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAG
* * *
86773804 ATCGAA-ATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAGCAGATCTAA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * *
86773868 CATTCATGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTTTGTATTAGATGGGG
66 CATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
86773933 AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAG
131 AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAG
86773983 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
1 ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
* * *
86774048 CATTCGTGTGTTTACATCGAAGCAAATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGG
66 CATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
86774113 ACCAGATCAAAGATAGCAGATCTGACATTCGTGTGTTTGCATCGAAGCAG
131 AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAG
* * *
86774163 ATC-AATAATGACAGATTTGGCGTCTCTGTATTAGACGGGGAACAGGTCGAAGATAGCAGATCTG
1 ATCGAA-GATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTG
* *
86774227 ACATTCGTGTGTTTACATCGAAGCAGATCGAAGAT-AGCATATTTGGCATCTCTGTATTTGACGG
65 ACATTCGTGTGTTTACATCGAAGCAGATCGAAGATGA-CAGATTTGGCATCTCTGTATTAGACGG
* *
86774291 GAAGCAGATCAAGGATA
129 GGAGCAGATCAAAGATA
86774308 TTAACATGGC
Statistics
Matches: 444, Mismatches: 42, Indels: 21
0.88 0.08 0.04
Matches are distributed among these distances:
164 2 0.00
165 62 0.14
171 70 0.16
172 1 0.00
179 18 0.04
180 291 0.66
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (180 bp):
ATCGAAGATGACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCAGATCTGA
CATTCGTGTGTTTACATCGAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACGGGG
AGCAGATCAAAGATAGCAGATCTGACATTCATGTGTTTACATCGAAGCAG
Found at i:86775742 original size:30 final size:30
Alignment explanation
Indices: 86775706--86775764 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
86775696 TTTTAATCCT
* *
86775706 TTTTAAATTTTTTATATATAATTTATTTTA
1 TTTTAAATATTTTATATATAATCTATTTTA
*
86775736 TTTTAAATATTTTATATATTATCTATTTT
1 TTTTAAATATTTTATATATAATCTATTTT
86775765 TACTATAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (30 bp):
TTTTAAATATTTTATATATAATCTATTTTA
Found at i:86775848 original size:34 final size:32
Alignment explanation
Indices: 86775796--86775963 Score: 103
Period size: 31 Copynumber: 5.4 Consensus size: 32
86775786 ATGTAAAAAA
86775796 TTATTATA-TA-TTATTTTTATTTATGTATTAT
1 TTATTATATTATTTATTTTTATTTAT-TATTAT
86775827 TTATTATATTATTTATATTTTA-TTA-TA-TAT
1 TTATTATATTATTTAT-TTTTATTTATTATTAT
86775857 TTATT-TA-TA--TA-TTTTA-TTATATATTAT
1 TTATTATATTATTTATTTTTATTTAT-TATTAT
* * *
86775884 ATCATTTTATTATATATATTATTCATTATATTATT-T
1 -TTATTATATTAT-T-TATT-TTTATT-TATTATTAT
* * *
86775920 TTATTTTATTATATA-TTATATTATATTATTAT
1 TTATTATATTATTTATTTTTATT-TATTATTAT
86775952 TTATTAT-TTATT
1 TTATTATATTATT
86775964 ATTATGTATA
Statistics
Matches: 111, Mismatches: 8, Indels: 36
0.72 0.05 0.23
Matches are distributed among these distances:
24 8 0.07
26 4 0.04
27 3 0.03
28 6 0.05
29 4 0.04
30 10 0.09
31 26 0.23
32 10 0.09
33 9 0.08
34 7 0.06
35 12 0.11
36 4 0.04
37 5 0.05
38 3 0.03
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (32 bp):
TTATTATATTATTTATTTTTATTTATTATTAT
Found at i:86775850 original size:50 final size:49
Alignment explanation
Indices: 86775796--86775968 Score: 177
Period size: 44 Copynumber: 3.6 Consensus size: 49
86775786 ATGTAAAAAA
86775796 TTATTATATATTATTTTTATTTATGTATTATTTATTATATTATTTATATT
1 TTATTATATATTATTTTTATTTAT-TATTATTTATTATATTATTTATATT
* *
86775846 TTATTATATATT-TATTTATATATT-TTA-TTA-TATATTA--TATCATT
1 TTATTATATATTATTTTTATTTATTATTATTTATTATATTATTTAT-ATT
* *
86775890 TTATTATATA-TATTATTCA-TTA-TATTATTT-TTATTTTATTATATATT
1 TTATTATATATTATT-TTTATTTATTATTATTTATTATATTATT-TATATT
*
86775937 ATATTATATTATTATTTATTATTTATTATTAT
1 TTATTATA-TATTATTT-TTATTTATTATTAT
86775969 GTATAATTTT
Statistics
Matches: 101, Mismatches: 8, Indels: 27
0.74 0.06 0.20
Matches are distributed among these distances:
43 5 0.05
44 19 0.19
45 18 0.18
46 3 0.03
47 13 0.13
48 7 0.07
49 15 0.15
50 15 0.15
51 6 0.06
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (49 bp):
TTATTATATATTATTTTTATTTATTATTATTTATTATATTATTTATATT
Found at i:86775913 original size:79 final size:79
Alignment explanation
Indices: 86775796--86775965 Score: 226
Period size: 79 Copynumber: 2.2 Consensus size: 79
86775786 ATGTAAAAAA
* *
86775796 TTATTATATA-T-TATTTTTATTTATGTATTATTTATTATATTATTTATATTTTATTATATATT-
1 TTATTATATATTATATTTTTATTTATATATTATTCATTATATTATTTATATTTTATTATATATTA
86775858 TATT-TA-TA-TATT
66 TATTATATTATTA-T
*
86775870 TTATTATATATTATATCATTTTATTATATATATTATTCATTATATTATTTTTATTTTATTATATA
1 TTATTATATATTATAT--TTTTATT-TATATATTATTCATTATATTATTTATATTTTATTATATA
86775935 TTATATTATATTATTAT
63 TTATATTATATTATTAT
*
86775952 TTATTATTTATTAT
1 TTATTATATATTAT
86775966 TATGTATAAT
Statistics
Matches: 83, Mismatches: 4, Indels: 10
0.86 0.04 0.10
Matches are distributed among these distances:
74 10 0.12
75 1 0.01
76 3 0.04
78 7 0.08
79 38 0.46
80 4 0.05
81 2 0.02
82 16 0.19
83 2 0.02
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.66
Consensus pattern (79 bp):
TTATTATATATTATATTTTTATTTATATATTATTCATTATATTATTTATATTTTATTATATATTA
TATTATATTATTAT
Found at i:86775964 original size:34 final size:34
Alignment explanation
Indices: 86775796--86775973 Score: 150
Period size: 34 Copynumber: 5.4 Consensus size: 34
86775786 ATGTAAAAAA
* *
86775796 TTATTATATATTAT-TTTTA-T-TTATGTATTAT
1 TTATTATATATTATATTATATTATTATTTATTAT
86775827 TTA-T-TATATTAT-TTATATT-TTA-TTATATAT
1 TTATTATATATTATATTATATTATTATTTAT-TAT
* * *
86775857 TTATTTATATATTTTATTATA-TATTATATCATTTT
1 TTA-TTATATATTATATTATATTATTAT-TTATTAT
86775892 ATTA-TATATATTATTCATTATATTATT-TTTA-T-T
1 -TTATTATATATTA-T-ATTATATTATTATTTATTAT
86775925 TTATTATATATTATATTATATTATTATTTATTAT
1 TTATTATATATTATATTATATTATTATTTATTAT
86775959 TTATTAT-TATGTATA
1 TTATTATATAT-TATA
86775974 ATTTTAAAAA
Statistics
Matches: 122, Mismatches: 7, Indels: 33
0.75 0.04 0.20
Matches are distributed among these distances:
29 15 0.12
30 11 0.09
31 14 0.11
32 9 0.07
33 22 0.18
34 29 0.24
35 5 0.04
36 13 0.11
37 4 0.03
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (34 bp):
TTATTATATATTATATTATATTATTATTTATTAT
Found at i:86776318 original size:18 final size:18
Alignment explanation
Indices: 86776282--86776323 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
86776272 AACTTGTTGA
* *
86776282 TTTAT-TTTCGTATTTTT
1 TTTATATTTAGTATTGTT
86776299 TTTATATTTAGTATTGTT
1 TTTATATTTAGTATTGTT
*
86776317 TTAATAT
1 TTTATAT
86776324 GTTAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.69
Consensus pattern (18 bp):
TTTATATTTAGTATTGTT
Found at i:86778484 original size:18 final size:18
Alignment explanation
Indices: 86778440--86778484 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
86778430 TTTCTTCTTT
*
86778440 TTTTTTTTTGGGGGTTAG
1 TTTTTTTTTGGGGGTAAG
*
86778458 GTTTTTTTT-GGGGTAAG
1 TTTTTTTTTGGGGGTAAG
86778475 TTTTTCTTTT
1 TTTTT-TTTT
86778485 TCTTTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 11 0.48
18 12 0.52
ACGTcount: A:0.07, C:0.02, G:0.27, T:0.64
Consensus pattern (18 bp):
TTTTTTTTTGGGGGTAAG
Found at i:86778494 original size:16 final size:16
Alignment explanation
Indices: 86778475--86778508 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
86778465 TTGGGGTAAG
86778475 TTTTTCTTT-TTCTTTT
1 TTTTTCTTTGTT-TTTT
86778491 TTTTTCTTTGTTTTTT
1 TTTTTCTTTGTTTTTT
86778507 TT
1 TT
86778509 GGGTTAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (16 bp):
TTTTTCTTTGTTTTTT
Found at i:86779540 original size:74 final size:74
Alignment explanation
Indices: 86779440--86779718 Score: 377
Period size: 74 Copynumber: 3.8 Consensus size: 74
86779430 AAGATAGAAT
* * * *
86779440 TTGAAAATACCTTAGCGTGCCGCAAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATT
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
86779505 TAATGGGAA
66 TAATGGGAA
* *
86779514 TTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATT
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
86779579 TAATGGGAA
66 TAATGGGAA
* * *
86779588 TTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA--
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
*
86779651 AACAT--GAA
66 TA-ATGGGAA
* * * ***
86779659 TTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
86779719 CTTGGAAACA
Statistics
Matches: 188, Mismatches: 16, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
71 55 0.29
72 1 0.01
73 2 0.01
74 130 0.69
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (74 bp):
TTGAAATTACCTCAGCGTGCCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATT
TAATGGGAA
Found at i:86779701 original size:71 final size:72
Alignment explanation
Indices: 86779395--86779718 Score: 354
Period size: 74 Copynumber: 4.5 Consensus size: 72
86779385 AATTAAAAGA
* * * *
86779395 CTCAACTCACCTCTCGTAATATGAATTGACTCTTTAAGAT--A--GAATTTGAAAATACCTTAGC
1 CTCAACTCACCTCTCGCAATATGAGTTGA-T-TTT-AGATAAATGGAA-TTGAAATTACCTCAGC
*
86779456 GTGCCGCAAGG
62 GTGCCCCAAGG
* *
86779467 CTCAACTCACCTCTCGCAATATGAGTCGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA-TAAAT-GGAATTGAAATTACCTCAGCGT
86779532 GCCCCAAGG
64 GCCCCAAGG
* * *
86779541 TTCAACTCACTTCTCGCAATATGAGTTGATTTTAGATTTAATGGGAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGA-TAAAT-GGAATTGAAATTACCTCAGCGT
86779606 GCCCCAAGG
64 GCCCCAAGG
* * * * *
86779615 TTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA-AACAT-GAATTGAAATTACCCCAACGTG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATAA-ATGGAATTGAAATTACCTCAGCGTG
* ***
86779678 TCTTGAGG
65 CCCCAAGG
86779686 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
86779719 CTTGGAAACA
Statistics
Matches: 226, Mismatches: 19, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
69 3 0.01
70 4 0.02
71 56 0.25
72 28 0.12
73 2 0.01
74 130 0.58
75 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (72 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTAGATAAATGGAATTGAAATTACCTCAGCGTGC
CCCAAGG
Found at i:86779860 original size:71 final size:71
Alignment explanation
Indices: 86779744--86780109 Score: 279
Period size: 71 Copynumber: 4.9 Consensus size: 71
86779734 TAAAAAGCAG
* * *
86779744 AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
86779809 AAACAT
66 AAACAT
* * *
86779815 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTT-T
86779880 TGGAAAACAT
64 T-G-AAACAT
* * ** * ** * * * * *
86779890 GAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATA
1 AAATTGAAAA-T---ACCTCAACGTGCC-CTGAG-G--CTCA-ACTC-A--C-C-TCTCGCAATA
* *
86779955 TGAGTTGATTTTT-ATTTA-AT
52 TGAGCTGATTTTTGA--AACAT
* * *
86779975 AGGAATTGAAATTACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTT
1 A--AATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
86780039 TGAAACAT
64 TGAAACAT
* * *
86780047 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
86780110 CTTGGAAAAC
Statistics
Matches: 227, Mismatches: 43, Indels: 50
0.71 0.13 0.16
Matches are distributed among these distances:
70 21 0.09
71 90 0.40
72 27 0.12
73 4 0.02
74 2 0.01
75 13 0.06
76 2 0.01
77 3 0.01
78 3 0.01
79 6 0.03
80 3 0.01
81 3 0.01
82 1 0.00
83 9 0.04
84 4 0.02
85 3 0.01
86 2 0.01
87 10 0.04
88 4 0.02
89 17 0.07
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTG
AAACAT
Found at i:86779875 original size:159 final size:160
Alignment explanation
Indices: 86779586--86780038 Score: 716
Period size: 159 Copynumber: 2.8 Consensus size: 160
86779576 ATTTAATGGG
* ** *
86779586 AATTGAAATTACCTCAGCGTGCCCCAAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * *
86779651 AACATGAATTGAAATTACCCCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
86779716 TTTCTTGG-AAACATGAACTAAAAAGCAGA
131 TTTCTTGGAAAACATGAACTAAAAAGCAGA
86779745 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
86779810 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
* *
86779875 TTTCTTGGAAAACATGAATTAAAAAGTAGA
131 TTTCTTGGAAAACATGAACTAAAAAGCAGA
86779905 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-A
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
* * **
86779969 TTTA-ATAGGAATTGAAATTACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGC
66 --AACATA--AATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
*
86780032 TGCTTTT
127 TGATTTT
86780039 TGAAACATAA
Statistics
Matches: 275, Mismatches: 14, Indels: 8
0.93 0.05 0.03
Matches are distributed among these distances:
159 132 0.48
160 85 0.31
161 38 0.14
162 20 0.07
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAACTAAAAAGCAGA
Found at i:86780052 original size:232 final size:233
Alignment explanation
Indices: 86779745--86780199 Score: 849
Period size: 232 Copynumber: 2.0 Consensus size: 233
86779735 AAAAAGCAGA
* *
86779745 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
86779810 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
86779875 TTTCTTGGAAAACATGAATTAAAAAGTAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
86779940 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
196 TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
* *
86779978 AATTGAAATTACCTCAGCGTGCCC-GAGGCTCAACTCACCTCTCGCAATATGAGCTGCTTTTTGA
1 AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
86780042 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
86780107 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGGAAATACCTCAGCGTGCCCTGAGGCTCAAC
131 TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
86780172 TCACTTCTCGCAATATGAGTTGATTTTT
196 TCACTTCTCGCAATATGAGTTGATTTTT
86780200 GGAAAAAAAC
Statistics
Matches: 216, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
232 193 0.89
233 23 0.11
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (233 bp):
AATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAAC
TCACTTCTCGCAATATGAGTTGATTTTTATTTAATAGG
Found at i:86797394 original size:11 final size:11
Alignment explanation
Indices: 86797378--86797407 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
86797368 TAACATTAAG
86797378 AATATATATAT
1 AATATATATAT
*
86797389 AATATAAATAT
1 AATATATATAT
86797400 AATATATA
1 AATATATA
86797408 CAATATACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:86798270 original size:14 final size:15
Alignment explanation
Indices: 86798253--86798286 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
86798243 TTGGGGTAAG
86798253 TTTTTCTTT-TTCTTT
1 TTTTTCTTTGTT-TTT
86798268 TTTTTCTTTGTTTTT
1 TTTTTCTTTGTTTTT
86798283 TTTT
1 TTTT
86798287 GGGTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 16 0.89
16 2 0.11
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:86800614 original size:19 final size:20
Alignment explanation
Indices: 86800571--86800616 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
86800561 ACCAAAAAAA
86800571 TAAAATAAATTTCAAATATT
1 TAAAATAAATTTCAAATATT
* * *
86800591 CAAAATAATTTTTAAA-ATT
1 TAAAATAAATTTCAAATATT
86800610 TAAAATA
1 TAAAATA
86800617 TTTAAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAATAAATTTCAAATATT
Found at i:86800675 original size:19 final size:19
Alignment explanation
Indices: 86800643--86800687 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
86800633 ATTTATTTTC
*
86800643 TAAAAAATAAAAAATTATA
1 TAAAATATAAAAAATTATA
* * *
86800662 TAAAATATATAAAATTTTC
1 TAAAATATAAAAAATTATA
86800681 TAAAATA
1 TAAAATA
86800688 ATACTTTTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAATATAAAAAATTATA
Found at i:86801359 original size:13 final size:13
Alignment explanation
Indices: 86801341--86801415 Score: 80
Period size: 13 Copynumber: 5.8 Consensus size: 13
86801331 TTCTTCATAT
86801341 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
86801354 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* * *
86801367 CTGTGGAAAATTG
1 CTTTTGAAAAGTG
* *
86801380 CTTTTGAGAAGTA
1 CTTTTGAAAAGTG
*
86801393 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
86801406 -TTTTGGAAAA
1 CTTTT-GAAAA
86801416 ATTTAAGTGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
12 4 0.08
13 47 0.92
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:86801397 original size:39 final size:39
Alignment explanation
Indices: 86801341--86801415 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
86801331 TTCTTCATAT
*
86801341 CTTTTGAAAAGTGCTTTTGAAAAGTGCTGTGGAAAATTG
1 CTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAATTG
* * * *
86801380 CTTTTGAGAAGTACTTTTGAGAAGTGTTTTGGAAAA
1 CTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAA
86801416 ATTTAAGTGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (39 bp):
CTTTTGAAAAGTACTTTTGAAAAGTGCTGTGGAAAATTG
Found at i:86802568 original size:17 final size:16
Alignment explanation
Indices: 86802537--86802578 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
86802527 ACATTATCAC
*
86802537 AGAACCACTCTTATTTG
1 AGAACAACTCTTA-TTG
86802554 -GAACAACTCTATATTG
1 AGAACAACTCT-TATTG
86802570 AGAACAACT
1 AGAACAACT
86802579 GTATTGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 12 0.55
17 10 0.45
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.29
Consensus pattern (16 bp):
AGAACAACTCTTATTG
Found at i:86808843 original size:7 final size:7
Alignment explanation
Indices: 86808802--86808836 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
86808792 CCTAAGGTGA
*
86808802 ATTTTCT
1 ATTTTTT
*
86808809 ATTTTCT
1 ATTTTTT
86808816 ATTTTTT
1 ATTTTTT
86808823 ATTTTTT
1 ATTTTTT
86808830 ATTTTTT
1 ATTTTTT
86808837 TCATTTTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (7 bp):
ATTTTTT
Found at i:86809725 original size:3 final size:3
Alignment explanation
Indices: 86809717--86809829 Score: 219
Period size: 3 Copynumber: 38.0 Consensus size: 3
86809707 TCTTGTATCT
86809717 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
86809765 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
86809812 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
86809830 ATAGGTACTT
Statistics
Matches: 109, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
2 2 0.02
3 107 0.98
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:86810097 original size:24 final size:22
Alignment explanation
Indices: 86810068--86810115 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
86810058 TAGCGTGTTT
86810068 TATTATATGTACATATACTCTCAA
1 TATTATAT-T-CATATACTCTCAA
* *
86810092 TATTATATTCTTATACTCTTAA
1 TATTATATTCATATACTCTCAA
86810114 TA
1 TA
86810116 CCATATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 13 0.59
23 1 0.05
24 8 0.36
ACGTcount: A:0.35, C:0.15, G:0.02, T:0.48
Consensus pattern (22 bp):
TATTATATTCATATACTCTCAA
Found at i:86810121 original size:22 final size:22
Alignment explanation
Indices: 86810081--86810122 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
86810071 TATATGTACA
**
86810081 TATACTCTCAATATTATATTCT
1 TATACTCTCAATACCATATTCT
*
86810103 TATACTCTTAATACCATATT
1 TATACTCTCAATACCATATT
86810123 ATTCTTATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.19, G:0.00, T:0.48
Consensus pattern (22 bp):
TATACTCTCAATACCATATTCT
Found at i:86810575 original size:38 final size:37
Alignment explanation
Indices: 86810533--86810617 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 37
86810523 AAATATTGTG
*
86810533 TATATATTTTTAAATACTATATT-GTATATGTATATATA
1 TATATATTTTT-AATACTATATTAGTATATAT-TATATA
* * *
86810571 TATATATTCTTAGTACTATATTACGTATATATTATGTA
1 TATATATTTTTAATACTATATTA-GTATATATTATATA
86810609 TATATATTT
1 TATATATTT
86810618 ATTTTTACCC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
37 10 0.25
38 23 0.57
39 7 0.17
ACGTcount: A:0.36, C:0.05, G:0.06, T:0.53
Consensus pattern (37 bp):
TATATATTTTTAATACTATATTAGTATATATTATATA
Found at i:86810709 original size:2 final size:2
Alignment explanation
Indices: 86810702--86810732 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
86810692 ATATTGTTTT
86810702 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
86810733 TATGTAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:86813672 original size:26 final size:26
Alignment explanation
Indices: 86813634--86813717 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
86813624 CATGAAATTC
* * *
86813634 TTATCATGAAACATTTACTTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
86813660 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
86813686 TTATCATGGAATATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
86813712 TTATCA
1 TTATCA
86813718 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.21, G:0.06, T:0.37
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:86814769 original size:17 final size:18
Alignment explanation
Indices: 86814727--86814781 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
86814717 CTAAAAATAA
86814727 AATTTTT-ATAATATTTT
1 AATTTTTAATAATATTTT
*
86814744 AATAATTTTAATGAT-TTTT
1 AAT--TTTTAATAATATTTT
*
86814763 AATTTTTAAAAATAGTTTT
1 AATTTTTAATAATA-TTTT
86814782 TATATATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
17 11 0.37
19 15 0.50
20 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (18 bp):
AATTTTTAATAATATTTT
Found at i:86814791 original size:30 final size:30
Alignment explanation
Indices: 86814749--86814805 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
86814739 ATTTTAATAA
*
86814749 TTTTAATGATTTTTAATTTTTAAAAATAGT
1 TTTTAATGATTTTTAAATTTTAAAAATAGT
86814779 TTTTATAT-ATTTTTAAATTTTAAAAAT
1 TTTTA-ATGATTTTTAAATTTTAAAAAT
86814806 TAATTATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.58
Consensus pattern (30 bp):
TTTTAATGATTTTTAAATTTTAAAAATAGT
Found at i:86835297 original size:13 final size:13
Alignment explanation
Indices: 86835279--86835303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86835269 TGAACTTACA
86835279 ATAAAAAAAAAAG
1 ATAAAAAAAAAAG
86835292 ATAAAAAAAAAA
1 ATAAAAAAAAAA
86835304 AAAACAAAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.04, T:0.08
Consensus pattern (13 bp):
ATAAAAAAAAAAG
Found at i:86840290 original size:33 final size:33
Alignment explanation
Indices: 86840242--86840306 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
86840232 TGACTAACCA
86840242 AAACCGAGCTCAATGTACTCATCATCAAATGCT
1 AAACCGAGCTCAATGTACTCATCATCAAATGCT
* *
86840275 AAACTGAGCTTAATGTACTCATCATCAAATGC
1 AAACCGAGCTCAATGTACTCATCATCAAATGC
86840307 CAAAAAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.26
Consensus pattern (33 bp):
AAACCGAGCTCAATGTACTCATCATCAAATGCT
Found at i:86845010 original size:7 final size:7
Alignment explanation
Indices: 86844998--86845031 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
86844988 AGGAGAAATT
86844998 GATGAAG
1 GATGAAG
86845005 GATGAAG
1 GATGAAG
86845012 GATGAAG
1 GATGAAG
86845019 GATGAAG
1 GATGAAG
86845026 GATGAA
1 GATGAA
86845032 ACAGATTTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.41, T:0.15
Consensus pattern (7 bp):
GATGAAG
Found at i:86848146 original size:17 final size:18
Alignment explanation
Indices: 86848124--86848157 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
86848114 CCATTAAATG
*
86848124 AGTTAT-TAGGTTGGTTA
1 AGTTATATAAGTTGGTTA
86848141 AGTTATATAAGTTGGTT
1 AGTTATATAAGTTGGTT
86848158 TAAAAGACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (18 bp):
AGTTATATAAGTTGGTTA
Found at i:86853002 original size:37 final size:37
Alignment explanation
Indices: 86852960--86853036 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
86852950 ATCAACCAGA
* *
86852960 ATTCTTCCATCAAAAATCTGTCAAGTCTGCTCCTTTT
1 ATTCTTCCAACAAAAATCTATCAAGTCTGCTCCTTTT
*
86852997 ATTCTTCTAACAAAAATCTATCAAGTCTGCTCCTTTT
1 ATTCTTCCAACAAAAATCTATCAAGTCTGCTCCTTTT
86853034 ATT
1 ATT
86853037 ATCCGAGCCA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.25, G:0.06, T:0.42
Consensus pattern (37 bp):
ATTCTTCCAACAAAAATCTATCAAGTCTGCTCCTTTT
Found at i:86869539 original size:20 final size:20
Alignment explanation
Indices: 86869498--86869539 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
86869488 AGCAATGAAT
*
86869498 CTGTTCACCAAGAGATACAA
1 CTGTTCACCAAGAGACACAA
* *
86869518 CTGTTCATCAAGAGACAGAA
1 CTGTTCACCAAGAGACACAA
86869538 CT
1 CT
86869540 ATTGTTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.24, G:0.17, T:0.21
Consensus pattern (20 bp):
CTGTTCACCAAGAGACACAA
Found at i:86878913 original size:16 final size:15
Alignment explanation
Indices: 86878892--86878928 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
86878882 TTCTATTTTC
86878892 TTTATTTAATTCATTA
1 TTTATTTAATTC-TTA
86878908 TTTATTTAATTCTTA
1 TTTATTTAATTCTTA
*
86878923 TCTATT
1 TTTATT
86878929 ATTATTATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTATTTAATTCTTA
Found at i:86880580 original size:6 final size:6
Alignment explanation
Indices: 86880565--86880636 Score: 58
Period size: 6 Copynumber: 12.3 Consensus size: 6
86880555 ATTGAGTCTA
* * * * *
86880565 TTTA-T TTTATT TTTA-T TTTATG GTCATT TTTATT TTTATT TTCAGT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* * *
86880611 TTTGTT TTTATG TTTATT GTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TT
86880637 CTTAAACTTC
Statistics
Matches: 49, Mismatches: 16, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
5 9 0.18
6 40 0.82
ACGTcount: A:0.15, C:0.03, G:0.08, T:0.74
Consensus pattern (6 bp):
TTTATT
Found at i:86880601 original size:18 final size:18
Alignment explanation
Indices: 86880573--86880636 Score: 67
Period size: 18 Copynumber: 3.6 Consensus size: 18
86880563 TATTTATTTT
*
86880573 ATTTTTA-TTTTATGGTC
1 ATTTTTATTTTTATGTTC
*
86880590 ATTTTTATTTTTATTTTC
1 ATTTTTATTTTTATGTTC
* * *
86880608 AGTTTTGTTTTTATGTTT
1 ATTTTTATTTTTATGTTC
*
86880626 ATTGTTATTTT
1 ATTTTTATTTT
86880637 CTTAAACTTC
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
17 7 0.19
18 30 0.81
ACGTcount: A:0.16, C:0.03, G:0.09, T:0.72
Consensus pattern (18 bp):
ATTTTTATTTTTATGTTC
Found at i:86889115 original size:2 final size:2
Alignment explanation
Indices: 86889110--86889138 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
86889100 TCTTTGGTAT
86889110 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
86889139 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:86893067 original size:2 final size:2
Alignment explanation
Indices: 86893060--86893095 Score: 56
Period size: 2 Copynumber: 18.0 Consensus size: 2
86893050 TTTTAGAACA
86893060 AT AT AT AT AT AT AT AT AT AT AT AT AT ACT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
86893096 TTTTTAAAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 30 0.94
3 1 0.03
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:86895664 original size:32 final size:33
Alignment explanation
Indices: 86895595--86895664 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
86895585 ATAATTCATA
* *
86895595 TTTAAAGTTATTTTTTCTATGTATATATTTTCT
1 TTTAAAGTTATTTTGTCTATATATATATTTTCT
*
86895628 TTTAAAGTTATTTATGTGTATAT-TATA-TTTCT
1 TTTAAAGTTATTT-TGTCTATATATATATTTTCT
86895660 TTTAA
1 TTTAA
86895665 GAACCATATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
32 10 0.30
33 17 0.52
34 6 0.18
ACGTcount: A:0.27, C:0.04, G:0.07, T:0.61
Consensus pattern (33 bp):
TTTAAAGTTATTTTGTCTATATATATATTTTCT
Found at i:86897153 original size:3 final size:3
Alignment explanation
Indices: 86897145--86897213 Score: 120
Period size: 3 Copynumber: 22.3 Consensus size: 3
86897135 CATCTTACTT
86897145 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
86897193 GAA GAA GAAA GAA GAAA GAA G
1 GAA GAA G-AA GAA G-AA GAA G
86897214 GGTTTGTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
3 58 0.91
4 6 0.09
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:86898075 original size:3 final size:3
Alignment explanation
Indices: 86898067--86898117 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
86898057 TTTTATAGTC
86898067 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
86898115 TCT
1 TCT
86898118 CTGTTATTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:86898211 original size:21 final size:21
Alignment explanation
Indices: 86898187--86898228 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
86898177 ATCCAACGTG
*
86898187 GCTAGTTAATTGGCCACGTCA
1 GCTAGTTAACTGGCCACGTCA
86898208 GCTAGTTAACTGGCCACGTCA
1 GCTAGTTAACTGGCCACGTCA
86898229 CCTATCCCGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (21 bp):
GCTAGTTAACTGGCCACGTCA
Found at i:86904645 original size:80 final size:80
Alignment explanation
Indices: 86904509--86904714 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
86904499 AATTAAATGA
* * ** * *
86904509 TATCCGGGCTAAGTCCC-AAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
86904573 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
86904586 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
86904651 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
86904668 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
86904715 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
77 1 0.01
79 15 0.14
80 90 0.83
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:86904692 original size:40 final size:39
Alignment explanation
Indices: 86904508--86904714 Score: 209
Period size: 40 Copynumber: 5.2 Consensus size: 39
86904498 CAATTAAATG
* * * *
86904508 ATATCCGGGCTAAGTCCC-AAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * * * * *
86904547 AAATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTG-TT
* *
86904587 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAG-TGTT
* *
86904627 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
* * *
86904667 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGT-GTT
86904707 ATATCCGG
1 ATATCCGG
86904715 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
39 17 0.12
40 124 0.87
41 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTGTT
Found at i:86915465 original size:61 final size:62
Alignment explanation
Indices: 86915365--86915487 Score: 203
Period size: 61 Copynumber: 2.0 Consensus size: 62
86915355 GGAAAACAAC
*
86915365 ATAGATAAATACCTACAACAGTTCCAACCCTATAAATTTGTCCAAG-AAAAAGTGTTTGATT
1 ATAGATAAATACCTACAACAGTTCCAACCCTATAAATTTGTCCAAGAAAAAAATGTTTGATT
* * *
86915426 ATAGATAAATACCTACAACAGTTGCAACCTTATACATTTGTCCAAGAAAAAAATGTTTGATT
1 ATAGATAAATACCTACAACAGTTCCAACCCTATAAATTTGTCCAAGAAAAAAATGTTTGATT
86915488 CTTTGATGAG
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
61 43 0.75
62 14 0.25
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.30
Consensus pattern (62 bp):
ATAGATAAATACCTACAACAGTTCCAACCCTATAAATTTGTCCAAGAAAAAAATGTTTGATT
Found at i:86920844 original size:5 final size:5
Alignment explanation
Indices: 86920823--86920875 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
86920813 TGTTAAAATA
* *
86920823 TATAT TAAAT TATTAT TATAT TATAG TATAT TATATT ATATAT TATAT
1 TATAT TATAT TA-TAT TATAT TATAT TATAT TATA-T -TATAT TATAT
86920871 TATAT
1 TATAT
86920876 AAATAAGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 31 0.76
6 6 0.15
7 4 0.10
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:86920854 original size:10 final size:9
Alignment explanation
Indices: 86920820--86920876 Score: 59
Period size: 8 Copynumber: 6.6 Consensus size: 9
86920810 ATGTGTTAAA
86920820 ATATATATT
1 ATATATATT
*
86920829 AAAT-TATT
1 ATATATATT
86920837 AT-TATATT
1 ATATATATT
86920845 ATAGTATATT
1 ATA-TATATT
86920855 ATAT-TA-T
1 ATATATATT
86920862 ATATTATATT
1 ATA-TATATT
86920872 ATATA
1 ATATA
86920877 AATAAGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
7 5 0.12
8 14 0.35
9 8 0.20
10 13 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (9 bp):
ATATATATT
Done.