Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 281 of 325
Found at i:87154292 original size:29 final size:27
Alignment explanation
Indices: 87154147--87154345 Score: 92
Period size: 29 Copynumber: 7.0 Consensus size: 27
87154137 TTTTTAATAT
*
87154147 TTTTTA-TAAGTTTATATTAATTTTTAT-A
1 TTTTTATTAA-TTT-TA-TAATGTTTATAA
*
87154175 TTTTTATTATTTTTTTATCAAT-TTTATAA
1 TTTTTATTA--ATTTTAT-AATGTTTATAA
* *
87154204 TTTTATAATTATTTTTTAATAAT-TCTAATATA
1 TTTT-T-ATTA-ATTTT-ATAATGT-TTATA-A
*
87154236 TTTTT-TTAATTTTA-AATATTTTAAATAA
1 TTTTTATTAATTTTATAAT-GTTT--ATAA
87154264 TTTTTATTAATTTTATAATTGGTTTATAA
1 TTTTTATTAATTTTATAA-T-GTTTATAA
*
87154293 TTTATTA-TATTTTTATAATGTTTATAA
1 TTT-TTATTAATTTTATAATGTTTATAA
*
87154320 GTTTTTA-TATTTTTAATAA-GTTTATA
1 -TTTTTATTAATTTT-ATAATGTTTATA
87154346 TAAATTTTAA
Statistics
Matches: 144, Mismatches: 7, Indels: 41
0.75 0.04 0.21
Matches are distributed among these distances:
26 3 0.02
27 27 0.19
28 31 0.22
29 44 0.31
30 19 0.13
31 15 0.10
32 5 0.03
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (27 bp):
TTTTTATTAATTTTATAATGTTTATAA
Found at i:87154378 original size:19 final size:18
Alignment explanation
Indices: 87154356--87154402 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
87154346 TAAATTTTAA
87154356 TATATAA-TTTTTATTTT
1 TATATAATTTTTTATTTT
*
87154373 TTTATAACTTTTTTATTTT
1 TATATAA-TTTTTTATTTT
*
87154392 TAAATAATTTT
1 TATATAATTTT
87154403 CTATGGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 6 0.24
18 4 0.16
19 15 0.60
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TATATAATTTTTTATTTT
Found at i:87164765 original size:34 final size:34
Alignment explanation
Indices: 87164722--87164788 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
87164712 GAACCCTAGC
87164722 CGCCAGCATGTGCTCCCCTCTGCTCCACCACCGA
1 CGCCAGCATGTGCTCCCCTCTGCTCCACCACCGA
87164756 CGCCAGCATGTGCTCCCCTCTGCTCCACCACCG
1 CGCCAGCATGTGCTCCCCTCTGCTCCACCACCG
87164789 TTTACCTGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.13, C:0.51, G:0.18, T:0.18
Consensus pattern (34 bp):
CGCCAGCATGTGCTCCCCTCTGCTCCACCACCGA
Found at i:87167477 original size:3 final size:3
Alignment explanation
Indices: 87167469--87167508 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
87167459 TTTATAAAAG
87167469 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
87167509 GAGTAAAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:87168203 original size:6 final size:6
Alignment explanation
Indices: 87168192--87168216 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
87168182 CCAATACCAG
87168192 CTCCAA CTCCAA CTCCAA CTCCAA C
1 CTCCAA CTCCAA CTCCAA CTCCAA C
87168217 GTCGGTCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (6 bp):
CTCCAA
Found at i:87168331 original size:54 final size:51
Alignment explanation
Indices: 87168272--87168389 Score: 193
Period size: 51 Copynumber: 2.3 Consensus size: 51
87168262 TCCAGTTCCA
87168272 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCT-TCT
1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCT-T
*
87168323 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTCTCTT
1 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT
* *
87168374 GCTCCACCACCTAAGG
1 GCACCACCACCCAAGG
87168390 CAGCCACTCC
Statistics
Matches: 63, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
51 62 0.98
52 1 0.02
ACGTcount: A:0.23, C:0.43, G:0.14, T:0.19
Consensus pattern (51 bp):
GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTCTT
Found at i:87168408 original size:51 final size:51
Alignment explanation
Indices: 87168272--87168415 Score: 157
Period size: 51 Copynumber: 2.8 Consensus size: 51
87168262 TCCAGTTCCA
** * *
87168272 GCACCACCACCCAAGGGTCCCACTCCTCAGTATAAGCCCCCAAGTTCTTCT
1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT
** *
87168323 GCACCACCACCCAAGGGTCCCACTCCTCTGTATAAGCCCCCAAGTTC-TCTT
1 GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTC-T
* * * *
87168374 GCTCCACCACCTAAGGCAGCCACTCCCCCT-TATAAACCCCCA
1 GCACCACCACCCAAGGCACCCACT-CCCCTGTATAAGCCCCCA
87168416 GCTCCTGCAC
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
50 2 0.02
51 77 0.93
52 4 0.05
ACGTcount: A:0.24, C:0.45, G:0.12, T:0.19
Consensus pattern (51 bp):
GCACCACCACCCAAGGCACCCACTCCCCTGTATAAGCCCCCAAGTTCTTCT
Found at i:87171513 original size:39 final size:39
Alignment explanation
Indices: 87171435--87171517 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 39
87171425 ATAATAAATT
* *
87171435 TAATATATATAATTAAAAGATATTGTTAACAACAAATAA
1 TAATATATAAAATTAAAAGATATTGTTAACAAAAAATAA
* *
87171474 TAATATATAAAATT-AAACATATTTTTTAA-AAAAATATAA
1 TAATATATAAAATTAAAAGATA-TTGTTAACAAAAA-ATAA
87171513 TAATA
1 TAATA
87171518 AATTTATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 10 0.26
39 28 0.74
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (39 bp):
TAATATATAAAATTAAAAGATATTGTTAACAAAAAATAA
Found at i:87171612 original size:29 final size:29
Alignment explanation
Indices: 87171579--87171645 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
87171569 CCAAATTAAA
87171579 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
87171608 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
87171637 CATCCCCAC
1 CA-CCCCAC
87171646 ACCCTACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 1 0.03
29 27 0.82
30 5 0.15
ACGTcount: A:0.31, C:0.51, G:0.01, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:87171655 original size:37 final size:37
Alignment explanation
Indices: 87171608--87171682 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
87171598 CTAACTCCAT
*
87171608 CACCCTACTAAACCATCCACTACCTCCATCATCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
87171645 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
87171682 C
1 C
87171683 TAACTCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.29, C:0.53, G:0.00, T:0.17
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:87171684 original size:18 final size:18
Alignment explanation
Indices: 87171661--87171696 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
87171651 ACTAAACCAT
*
87171661 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
87171679 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
87171697 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:87172107 original size:18 final size:17
Alignment explanation
Indices: 87172084--87172121 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
87172074 TTATGTTTCA
87172084 TATTATTATATTATTTAT
1 TATTATTATA-TATTTAT
87172102 TATTATTATATATTTAT
1 TATTATTATATATTTAT
87172119 TAT
1 TAT
87172122 GTAAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTATTATATATTTAT
Found at i:87172129 original size:17 final size:17
Alignment explanation
Indices: 87172084--87172136 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
87172074 TTATGTTTCA
87172084 TATTATTAT-AT-TATT
1 TATTATTATAATATATT
*
87172099 TATTATTATTATATATT
1 TATTATTATAATATATT
*
87172116 TATTATGTA-AATATATA
1 TATTAT-TATAATATATT
87172133 TATT
1 TATT
87172137 TTTAAGCGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 9 0.27
16 2 0.06
17 20 0.61
18 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTATTATAATATATT
Found at i:87172137 original size:21 final size:18
Alignment explanation
Indices: 87172084--87172133 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
87172074 TTATGTTTCA
87172084 TATTAT-TATATTATTTAT
1 TATTATATATA-TATTTAT
87172102 TATTAT-TATATATTTAT
1 TATTATATATATATTTAT
*
87172119 TATGTAAATATATAT
1 TAT-TATATATATAT
87172134 ATTTTTAAGC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 10 0.34
18 12 0.41
19 7 0.24
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TATTATATATATATTTAT
Found at i:87172823 original size:126 final size:127
Alignment explanation
Indices: 87172590--87172826 Score: 422
Period size: 126 Copynumber: 1.9 Consensus size: 127
87172580 CTTCTCTCAC
* *
87172590 AAATTTTCAAAATAAAGGCAATGTTCGGTATTTGAAGAATTCGAAGAATCGTGCCCTAACGTACT
1 AAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTAGAAGAATCGTGCCCTAACGTACT
*
87172655 GGGTTTTGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCATTCTAGAA
66 GGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCATTCTAGAA
*
87172717 AAATTTT-AAAATAAAGGCAATGTTCGGTATTTAAAGAATTAGAAGAATCGTGCCCTAATGTACT
1 AAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTAGAAGAATCGTGCCCTAACGTACT
*
87172781 GGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 GGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
87172827 AGGCTAAAAC
Statistics
Matches: 105, Mismatches: 5, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
126 98 0.93
127 7 0.07
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (127 bp):
AAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTAGAAGAATCGTGCCCTAACGTACT
GGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCTGTTCATTCTAGAA
Found at i:87184512 original size:43 final size:44
Alignment explanation
Indices: 87184329--87184783 Score: 148
Period size: 45 Copynumber: 10.2 Consensus size: 44
87184319 AATCATAAGC
*
87184329 CTTATCTTCACTGAGTAGGAGTGGAGCAGGCT-AAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACCAGAT
* * * ***
87184372 CTTATCTTCACTGAGCAGAAGTGAAGCA-GATCAAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAA--TACCAG-AT
* * * * ** * ** *
87184418 CTTAGCTCCAC-GTA-CTGGCGATGGAGCAGATTCCAATCATAAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCTCAAAT-ACCAGAT
*
87184462 CTTATCTTCACTGAACAGGAGTGGAGCAGGCT-AAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACCAGAT
* * * * ***
87184505 CTTATCTTCACTGAGCAGTAGTGAAGCA-GATCGAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTC-AA-ATACCAG-AT
* * * ** * ** *
87184551 CTTATCTCCAC-GTA-CCGGCGATGGAGCAGATTCCAATCATTAGCT
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCTCAAAT-ACCAGAT
* * *
87184596 -TTATCTTTATTGAGCAGGAGTGGAGCAGGCTAAATATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAA-ATACCAGAT
* * * * ***
87184640 CTTATCTTCATTGAGCAGGAGTGAAGCA-GATCGAATTTTGGAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTC-AA-ATACCAG-AT
* * ** * *
87184686 CTTATCTTCAC-GTA-CCGGTGATGGAGCAGATTCCAATCATCA-A-
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCTCAAAT-ACCAGAT
* *
87184729 CTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATACCAGGT
1 C-TTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAA-ATACCAGAT
87184775 CTTATCTTC
1 CTTATCTTC
87184784 GGTAAGCAGG
Statistics
Matches: 287, Mismatches: 90, Indels: 68
0.64 0.20 0.15
Matches are distributed among these distances:
42 7 0.02
43 57 0.20
44 70 0.24
45 81 0.28
46 64 0.22
47 8 0.03
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (44 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTCAAATACCAGAT
Found at i:87184698 original size:135 final size:133
Alignment explanation
Indices: 87184054--87185034 Score: 1304
Period size: 133 Copynumber: 7.3 Consensus size: 133
87184044 GATTACAGAT
* * *
87184054 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGCAGCAAGCTAAATACCAGATCTTATTTTCACTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* ** * * *
87184119 AGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTTAATGTACTGGCAATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
87184184 CCA
131 CCA
* * * *
87184187 ATCATAAGCCTTATCTTCACTAAGCAGGAGTGGAGCAGGTTAAATACTAGATCTTATCTTCATTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * * *
87184252 AGCATGAGTCAAGTAGATCGAATTTTGGAGAATCTTAGCTCCACGTACTGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
87184317 CCA
131 CCA
*
87184320 ATCATAAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * *
87184385 AGCAGAAGTGAAGCAGATCAAATTTTGGAGAATCTTAGCTCCACGTACTGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
87184450 CCA
131 CCA
*
87184453 ATCATAAGCCTTATCTTCACTGAACAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
*
87184518 AGCAGTAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
87184583 CCA
131 CCA
* * * * *
87184586 ATCATTAGCTTTATCTTTATTGAGCAGGAGTGGAGCAGGCTAAATATACCAGATCTTATCTTCAT
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATACCAGATCTTATCTTCAC
* *
87184651 TGAGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTTCACGTACCGGTGATGGAGCAGA
64 TGAGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
87184716 TTCCA
129 TTCCA
* * *
87184721 ATCATCAA-CTTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATATACCAGGTCTTATCTTCG
1 ATCAT-AAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATACCAGATCTTATCTTCA
* * * * * * * *
87184785 GTAAGCAGGAGCGGAA-CAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATGGAGCA
63 CTGAGCAGGAG-TGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCA
* *
87184849 GGTTTCA
127 GATTCCA
** * * * * *
87184856 GCCACCAA-CTTTATCTTCACTGAGCAGGAATGGAGCAGGGTAAATATACCAGATCTTATTTTCA
1 ATCA-TAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AA-ATACCAGATCTTATCTTCA
* *
87184920 TTGAGCAGGAGTGAAGCAGATCGAATGTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAG
63 CTGAGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAG
87184985 ATTCCA
128 ATTCCA
* * * * * *
87184991 ATCATCAGCTTTATCTTTACTAAGCAGTAG-GGTAACAGGCTAAA
1 ATCATAAGCCTTATCTTCACTGAGCAGGAGTGG-AGCAGGCTAAA
87185035 ATTTACAGAT
Statistics
Matches: 753, Mismatches: 87, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
133 404 0.54
134 10 0.01
135 335 0.44
136 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (133 bp):
ATCATAAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
AGCAGGAGTGAAGCAGATCGAATTTTGGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
CCA
Found at i:87185157 original size:85 final size:85
Alignment explanation
Indices: 87185010--87185299 Score: 440
Period size: 85 Copynumber: 3.4 Consensus size: 85
87185000 TTTATCTTTA
* * *
87185010 CTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCCTAGCTCTCTGAGCAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
*
87185075 CGAAGA-TCCACCTTAACCCC
66 CGAAGACT-CGCCTTAACCCC
* * ** **
87185095 CTAAGCAGTAGGGTAACAGGCTAAAATTTATAGATCCTGGCTAGCCGAGCAGTGGTTAAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
*
87185160 CAAAGACTCGCCTTAACCCC
66 CGAAGACTCGCCTTAACCCC
*
87185180 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAACAGTGGTGGAGCAGGT
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
87185245 CGAAGACTCGCCTTAACCCC
66 CGAAGACTCGCCTTAACCCC
*
87185265 TTAAGCAGTAAGGTAACAGGCTAAAA-TTACAGATC
1 CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATC
87185300 TTATCTTCGT
Statistics
Matches: 186, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
84 9 0.05
85 176 0.95
86 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.21
Consensus pattern (85 bp):
CTAAGCAGTAAGGTAACAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGT
CGAAGACTCGCCTTAACCCC
Found at i:87185571 original size:29 final size:29
Alignment explanation
Indices: 87185538--87185601 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
87185528 CCAAATTAAA
87185538 CACCCCACTAAACCGA-CCACTAACTCCAT
1 CACCCCACTAAACC-ATCCACTAACTCCAT
* *
87185567 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCCACTAAACCATCCACTAACTCCAT
87185596 CACCCC
1 CACCCC
87185602 CACACCCTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.03
29 30 0.97
ACGTcount: A:0.31, C:0.52, G:0.02, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAACCATCCACTAACTCCAT
Found at i:87185615 original size:37 final size:37
Alignment explanation
Indices: 87185567--87185641 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
87185557 CTAACTCCAT
87185567 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
*
87185604 CACCCTGCTAAACCATCCACTACCTCCATCACCCCCA
1 CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
87185641 C
1 C
87185642 TAACTCCATC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.55, G:0.01, T:0.16
Consensus pattern (37 bp):
CACCCTACTAAACCATCCACTACCTCCATCACCCCCA
Found at i:87185643 original size:18 final size:18
Alignment explanation
Indices: 87185583--87185655 Score: 69
Period size: 18 Copynumber: 4.0 Consensus size: 18
87185573 ACTAAACCAT
87185583 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
* * *
87185601 CCAC-ACCCTGC-TAAACCAT
1 CCACTA-CCTCCAT-CACC-C
87185620 CCACTACCTCCATCACCC
1 CCACTACCTCCATCACCC
*
87185638 CCACTAACTCCATCACCC
1 CCACTACCTCCATCACCC
87185656 TACTTGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
17 2 0.05
18 28 0.65
19 11 0.26
20 2 0.05
ACGTcount: A:0.26, C:0.56, G:0.01, T:0.16
Consensus pattern (18 bp):
CCACTACCTCCATCACCC
Found at i:87186063 original size:60 final size:61
Alignment explanation
Indices: 87185929--87186067 Score: 158
Period size: 60 Copynumber: 2.2 Consensus size: 61
87185919 TTTAACCCCT
* * *
87185929 TTTTTATTTTTTTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTTTA-TTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTATTATA
* * *
87185992 TTTGTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATA
1 TTT-TTATTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATTATTATA
87186052 TTATTTATTTATTATT
1 TT-TTTATTTATTATT
87186068 ATATATTTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
60 26 0.39
61 5 0.08
62 20 0.30
63 13 0.20
64 2 0.03
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.65
Consensus pattern (61 bp):
TTTTTATTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTATTATA
Found at i:87186066 original size:19 final size:18
Alignment explanation
Indices: 87186042--87186078 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
87186032 TTATGTTTCA
87186042 TATTATTATATTATTTATT
1 TATTATTATA-TATTTATT
87186061 TATTATTATATATTTATT
1 TATTATTATATATTTATT
87186079 ATGTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTATTATATATTTATT
Found at i:87186067 original size:63 final size:61
Alignment explanation
Indices: 87185931--87186069 Score: 151
Period size: 62 Copynumber: 2.2 Consensus size: 61
87185921 TAACCCCTTT
*
87185931 TTTATTTTT-TTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATA
1 TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGC-TTATTCTCATTATTTTTATA
* * *
87185992 TTTGTTTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TTATGTTTCA-TATTATTATATT
1 TTT-ATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTAT-TCTCATTATT-TT-TA-T
87186054 A
61 A
87186055 TTTATTTATTATTAT
1 TTTATTT-TTATTAT
87186070 ATATTTATTA
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
60 8 0.12
61 9 0.14
62 30 0.45
63 19 0.29
ACGTcount: A:0.27, C:0.04, G:0.05, T:0.64
Consensus pattern (61 bp):
TTTATTTTTATTATTTTACTATTAAATTAATTAATTTGAGCTTATTCTCATTATTTTTATA
Found at i:87186090 original size:17 final size:14
Alignment explanation
Indices: 87186050--87186080 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
87186040 CATATTATTA
*
87186050 TATTATTTATTTAT
1 TATTATATATTTAT
87186064 TATTATATATTTAT
1 TATTATATATTTAT
87186078 TAT
1 TAT
87186081 GTAAATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATTATATATTTAT
Found at i:87186765 original size:126 final size:126
Alignment explanation
Indices: 87186530--87186766 Score: 420
Period size: 126 Copynumber: 1.9 Consensus size: 126
87186520 CATTGATCTT
* * *
87186530 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAAAATTCGAAGAATCGTGCCTTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAAAATTCGAAGAATCGTGCCCTA
*
87186595 ACGTACTGGGTTTTACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
*
87186656 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAAAATTCGAAGAATCGTGCCCTA
*
87186721 ACGTACTGGGTTTCACTTTCTTTGTTTGTTTTGAATATTCGAATAT
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATAT
87186767 TCTATTAAGG
Statistics
Matches: 105, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 105 1.00
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.38
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAAAATTCGAAGAATCGTGCCCTA
ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:87187682 original size:30 final size:30
Alignment explanation
Indices: 87187646--87187705 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
87187636 TATTTTATTA
*
87187646 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
* *
87187676 TTAATTTTATTATTATTTTAGAGGTATTTG
1 TTAATTTTATTATTATTTTAAAGGCATTTG
87187706 CTTGTTAACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.27, C:0.02, G:0.13, T:0.58
Consensus pattern (30 bp):
TTAATTTTATTATTATTTTAAAGGCATTTG
Found at i:87187732 original size:36 final size:36
Alignment explanation
Indices: 87187690--87187759 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
87187680 TTTTATTATT
87187690 ATTTTAGAGGTATTTGCTTGTTAACTTGCATCTAGC
1 ATTTTAGAGGTATTTGCTTGTTAACTTGCATCTAGC
*
87187726 ATTTTAGAGGTATTTGCTTGTTAAGTTGCATCTA
1 ATTTTAGAGGTATTTGCTTGTTAACTTGCATCTA
87187760 TCTTAGTGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (36 bp):
ATTTTAGAGGTATTTGCTTGTTAACTTGCATCTAGC
Found at i:87188169 original size:23 final size:24
Alignment explanation
Indices: 87188143--87188188 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
87188133 TTTATTATTA
*
87188143 TATTTTTATATATTTTT-AAAATT
1 TATTCTTATATATTTTTGAAAATT
*
87188166 TATTCTTATATTTTTTTGAAAAT
1 TATTCTTATATATTTTTGAAAAT
87188189 ATTTATGTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TATTCTTATATATTTTTGAAAATT
Found at i:87188585 original size:26 final size:24
Alignment explanation
Indices: 87188550--87188610 Score: 113
Period size: 24 Copynumber: 2.5 Consensus size: 24
87188540 GTTTAAAGCT
87188550 AAAACTTATATAAGTTATATGTAG
1 AAAACTTATATAAGTTATATGTAG
87188574 AAAACTTATATAAGTTATATGTAG
1 AAAACTTATATAAGTTATATGTAG
*
87188598 TAAACTTATATAA
1 AAAACTTATATAA
87188611 AAATAATACT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.38
Consensus pattern (24 bp):
AAAACTTATATAAGTTATATGTAG
Found at i:87190020 original size:15 final size:15
Alignment explanation
Indices: 87189975--87190021 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
87189965 AAACAATAAC
87189975 ATAAATGACTAAAAT
1 ATAAATGACTAAAAT
* *
87189990 ATAACAT--TTCAAAT
1 ATAA-ATGACTAAAAT
87190004 ATAAATGACTAAAAT
1 ATAAATGACTAAAAT
87190019 ATA
1 ATA
87190022 CTATGAAGTA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
13 2 0.08
14 9 0.36
15 12 0.48
16 2 0.08
ACGTcount: A:0.57, C:0.09, G:0.04, T:0.30
Consensus pattern (15 bp):
ATAAATGACTAAAAT
Found at i:87194750 original size:2 final size:2
Alignment explanation
Indices: 87194743--87194767 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
87194733 TTGGATAAGA
87194743 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
87194768 GATTGTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:87196978 original size:39 final size:39
Alignment explanation
Indices: 87196935--87197069 Score: 114
Period size: 39 Copynumber: 3.4 Consensus size: 39
87196925 ACCAATATGG
*
87196935 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAATTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
* * * *
87196974 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAATTGA
* * * * *
87197012 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATA-ATTGA
*
87197053 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
87197070 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAATTGA
Found at i:87198608 original size:17 final size:17
Alignment explanation
Indices: 87198586--87198620 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
87198576 GAATGCTCTC
*
87198586 TGTTTCTTCTTCTTCTT
1 TGTTTCTTCTTATTCTT
*
87198603 TGTTTCTTTTTATTCTT
1 TGTTTCTTCTTATTCTT
87198620 T
1 T
87198621 TTCGTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.17, G:0.06, T:0.74
Consensus pattern (17 bp):
TGTTTCTTCTTATTCTT
Found at i:87198690 original size:13 final size:13
Alignment explanation
Indices: 87198650--87198683 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87198640 ACATATATAT
* *
87198650 ATAATATTATTTA
1 ATAATAATAGTTA
87198663 ATAATAATAGTTA
1 ATAATAATAGTTA
87198676 ATAATAAT
1 ATAATAAT
87198684 TTATAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (13 bp):
ATAATAATAGTTA
Found at i:87199775 original size:7 final size:7
Alignment explanation
Indices: 87199763--87199847 Score: 54
Period size: 7 Copynumber: 12.9 Consensus size: 7
87199753 ATCAAATCAT
87199763 TAAACCC
1 TAAACCC
87199770 TAAA-CC
1 TAAACCC
87199776 TAAA-CC
1 TAAACCC
**
87199782 TAAACTT
1 TAAACCC
*
87199789 TGAACCC
1 TAAACCC
*
87199796 AAAACCC
1 TAAACCC
87199803 -AAA-CC
1 TAAACCC
87199808 TAAACCC
1 TAAACCC
* *
87199815 AAAACCT
1 TAAACCC
*
87199822 TAAATCC
1 TAAACCC
*
87199829 TAAA-TC
1 TAAACCC
87199835 TAAACCC
1 TAAACCC
*
87199842 TGAACC
1 TAAACC
87199848 TTAAGGTTTG
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
5 2 0.03
6 23 0.39
7 34 0.58
ACGTcount: A:0.46, C:0.34, G:0.02, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:87199781 original size:13 final size:13
Alignment explanation
Indices: 87199763--87199848 Score: 59
Period size: 13 Copynumber: 6.5 Consensus size: 13
87199753 ATCAAATCAT
87199763 TAAACCCTAAA-CC
1 TAAA-CCTAAACCC
**
87199776 TAAACCTAAACTT
1 TAAACCTAAACCC
* *
87199789 TGAACCCAAAACCC
1 T-AAACCTAAACCC
87199803 -AAACCTAAACCC
1 TAAACCTAAACCC
* *
87199815 AAAACCTTAAATCC
1 TAAACC-TAAACCC
*
87199829 TAAATCTAAACCC
1 TAAACCTAAACCC
*
87199842 TGAACCT
1 TAAACCT
87199849 TAAGGTTTGG
Statistics
Matches: 55, Mismatches: 14, Indels: 8
0.71 0.18 0.10
Matches are distributed among these distances:
12 16 0.29
13 21 0.38
14 18 0.33
ACGTcount: A:0.45, C:0.34, G:0.02, T:0.19
Consensus pattern (13 bp):
TAAACCTAAACCC
Found at i:87201363 original size:17 final size:16
Alignment explanation
Indices: 87201331--87201385 Score: 74
Period size: 17 Copynumber: 3.2 Consensus size: 16
87201321 TTTTAGTCCT
87201331 AATTATAAAAATATTAA
1 AATTATAAAAA-ATTAA
87201348 TAATTATAAAAAATTAA
1 -AATTATAAAAAATTAA
*
87201365 CATTATAAAAAAATTAA
1 AATTAT-AAAAAATTAA
87201382 AATT
1 AATT
87201386 TTTCAAAAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
16 5 0.15
17 18 0.53
18 11 0.32
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
AATTATAAAAAATTAA
Found at i:87201560 original size:20 final size:20
Alignment explanation
Indices: 87201537--87201574 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87201527 TATTTACTTA
* *
87201537 ATTTATTTTTTAAAATTTAT
1 ATTTAGTTTTAAAAATTTAT
87201557 ATTTAGTTTTAAAAATTT
1 ATTTAGTTTTAAAAATTT
87201575 TAAGACTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (20 bp):
ATTTAGTTTTAAAAATTTAT
Found at i:87203816 original size:2 final size:2
Alignment explanation
Indices: 87203803--87203840 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
87203793 ATACTACATA
* *
87203803 AT AT AC AT AT AT AT AT AT AT AT AT AT A- AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
87203841 CTAATATGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (2 bp):
AT
Found at i:87205949 original size:54 final size:55
Alignment explanation
Indices: 87205849--87205954 Score: 126
Period size: 54 Copynumber: 1.9 Consensus size: 55
87205839 GCCCCGAGGC
* *
87205849 TCAACTCACCTCTAGCAATATGACCTGATTTTGAAAAAGTAGAAATT-AAAAGGT
1 TCAACCCACCTCTAGCAATATGACCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
* ** * *
87205903 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGAACAA-CATAAATTGAAAA
1 TCAACCCACCTCTAGCAATATGACCTGATT-TTGAAAAAGCAGAAATTGAAAA
87205955 CAGAAATTGA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
54 32 0.74
55 11 0.26
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (55 bp):
TCAACCCACCTCTAGCAATATGACCTGATTTTGAAAAAGCAGAAATTGAAAAGGT
Found at i:87205961 original size:13 final size:13
Alignment explanation
Indices: 87205934--87205967 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
87205924 GAGTTGATTC
*
87205934 TTGAACAACATAAA
1 TTGAA-AACAGAAA
87205948 TTGAAAACAGAAA
1 TTGAAAACAGAAA
87205961 TTGAAAA
1 TTGAAAA
87205968 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:87206058 original size:14 final size:14
Alignment explanation
Indices: 87206039--87206065 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
87206029 AAAAATTAAA
87206039 AACAGAATTTGAAT
1 AACAGAATTTGAAT
87206053 AACAGAATTTGAA
1 AACAGAATTTGAA
87206066 AATACCTCGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.26
Consensus pattern (14 bp):
AACAGAATTTGAAT
Found at i:87206142 original size:102 final size:99
Alignment explanation
Indices: 87205934--87206155 Score: 243
Period size: 102 Copynumber: 2.2 Consensus size: 99
87205924 GAGTTGATTC
* * **
87205934 TTGAACAACATAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTTGACTCACC
1 TTGAAAAACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACC
* *
87205999 TCTCGCAATATGAGTTGGTTTTAGGAAAGTAAAAA
66 TCTCGCAATATGAGTTGATTTTACGAAAG-AAAAA
* * *
87206034 TT-AAAAACAGAATTTGAATAACAGAATTTGAAAATACCTC-GACATGTGACTCGAGGCTCAACT
1 TTGAAAAACAGAAATTGAA-AACAGAAATTGAAAATACCTCAG-C--GTGACCCGAGGCTCAACT
* * * * *
87206097 CATCTCTTGCAATATGAGTTGATTTTGACGAACG-GAAT
62 CACCTCTCGCAATATGAGTTGATTTT-ACGAAAGAAAAA
87206135 TTGAAAAACAGAAATTGAAAA
1 TTGAAAAACAGAAATTGAAAA
87206156 TAGCTCAGCA
Statistics
Matches: 101, Mismatches: 15, Indels: 11
0.80 0.12 0.09
Matches are distributed among these distances:
99 14 0.14
100 23 0.23
101 6 0.06
102 53 0.52
103 5 0.05
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (99 bp):
TTGAAAAACAGAAATTGAAAACAGAAATTGAAAATACCTCAGCGTGACCCGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTACGAAAGAAAAA
Found at i:87206197 original size:88 final size:88
Alignment explanation
Indices: 87206043--87206210 Score: 241
Period size: 88 Copynumber: 1.9 Consensus size: 88
87206033 ATTAAAAACA
* * * * * *
87206043 GAATTTGAATAACAGAATTTGAAAATACCTCGACATGTGACTCGAGGCTCAACTCATCTCTTGCA
1 GAATTTGAAAAACAGAAATTGAAAATACCTCGACACGTGACTCAAGGCTCAACTCACCTCTCGCA
87206108 ATATGAGTTGATTTTGACGAACG
66 ATATGAGTTGATTTTGACGAACG
*
87206131 GAATTTGAAAAACAGAAATTGAAAATAGCTC-AGCACGTGAGC-CAAGGCTCAACTCACCTCTCG
1 GAATTTGAAAAACAGAAATTGAAAATACCTCGA-CACGTGA-CTCAAGGCTCAACTCACCTCTCG
87206194 CAATATGAGTTGATTTT
64 CAATATGAGTTGATTTT
87206211 TGAAAAACAA
Statistics
Matches: 71, Mismatches: 7, Indels: 4
0.87 0.09 0.05
Matches are distributed among these distances:
87 1 0.01
88 69 0.97
89 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (88 bp):
GAATTTGAAAAACAGAAATTGAAAATACCTCGACACGTGACTCAAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTGACGAACG
Found at i:87206447 original size:144 final size:146
Alignment explanation
Indices: 87206277--87206560 Score: 392
Period size: 144 Copynumber: 1.9 Consensus size: 146
87206267 AAACATAAAC
* * *
87206277 TAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGT-TGATTTTGGAGC
1 TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTATGATTTTGAAAC
* * * * *
87206341 ATAAATTGAAATTACCTCAACGTGT-CTTGAGGCTCAACTCACCTTTCGCAATATGAGCTGATTT
66 ATAAACTAAAAATACCTCAACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
87206405 TTGAAAAAACAGGAAT
131 TTGAAAAAACAGGAAT
* ** **
87206421 TAAAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTTGAA
1 TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGT--ATGATTTTGAA
* *
87206486 ACATAAACTAAAAATACCTCAGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
64 ACATAAACTAAAAATACCTCAACGTGT-GCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA
87206551 TTTTTGAAAA
128 TTTTTGAAAA
87206561 CATGAATAAT
Statistics
Matches: 120, Mismatches: 15, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
144 48 0.40
147 29 0.24
149 43 0.36
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.28
Consensus pattern (146 bp):
TAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTATGATTTTGAAAC
ATAAACTAAAAATACCTCAACGTGTGCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTT
TTGAAAAAACAGGAAT
Found at i:87206455 original size:74 final size:74
Alignment explanation
Indices: 87206267--87206560 Score: 328
Period size: 74 Copynumber: 4.0 Consensus size: 74
87206257 TCAATTTTCT
* * *
87206267 AAACATAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAACATAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
87206332 -TTTTG---
66 TTTTTGAAA
* * * * * * * * *
87206337 GAGCATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGCTGA
1 AAACATAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
87206402 TTTTTGAAA
66 TTTTTGAAA
** ** **
87206411 AAACAGGAATTAAAAATACCTCAGCGTGACCTGAGGCTTGACTCACCTCTCGCAATATGAGTCAA
1 AAACATAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
***
87206476 TTTTT-TTG
66 TTTTTGAAA
* *
87206484 AAACATAAACTAAAAATACCTCAGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAACATAAATTAAAAATACCTCAGC--GTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
87206549 GATTTTTGAAA
64 GATTTTTGAAA
87206560 A
1 A
87206561 CATGAATAAT
Statistics
Matches: 177, Mismatches: 40, Indels: 8
0.79 0.18 0.04
Matches are distributed among these distances:
70 54 0.31
71 5 0.03
73 22 0.12
74 55 0.31
75 40 0.23
76 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.28
Consensus pattern (74 bp):
AAACATAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTGAAA
Found at i:87206554 original size:75 final size:72
Alignment explanation
Indices: 87206229--87206555 Score: 322
Period size: 74 Copynumber: 4.5 Consensus size: 72
87206219 AAAAATTAAA
* * * * * *
87206229 AGGCTTAACTCACCTTTCGCAAGATGAG-TCAATTTTCT-AAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGC
*
87206292 GTGCCCCG
66 GTG-CCTG
* * * * * *
87206300 AGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTGGAGCATAAATTGAAATTACCTCAAC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGC
*
87206362 GTGTCTTG
66 GTG-CCTG
* * *** ** *
87206370 AGGCTCAACTCACCTTTCGCAATATGAGCTGATTTTTGAAAAAACAGGAATTAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TTGAAACATAAACTAAAAATACCTCAG
87206435 CGTGACCTG
65 CGTG-CCTG
** **
87206444 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAACATAAACTAAAAATACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGC
87206509 GTGTGGCCTG
66 --GT-GCCTG
87206519 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
87206556 GAAAACATGA
Statistics
Matches: 203, Mismatches: 44, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
69 3 0.01
70 54 0.27
71 25 0.12
72 2 0.01
73 24 0.12
74 55 0.27
75 39 0.19
76 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAACATAAACTAAAAATACCTCAGC
GTGCCTG
Found at i:87206660 original size:14 final size:14
Alignment explanation
Indices: 87206641--87206687 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
87206631 GAGTTAACTT
*
87206641 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
87206655 TTG--AAACAGGAA
1 TTGAAAAACAGAAA
*
87206667 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
87206681 TTGAAAA
1 TTGAAAA
87206688 TACCTCAGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 10 0.37
14 17 0.63
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.19
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:87206741 original size:98 final size:91
Alignment explanation
Indices: 87206676--87206922 Score: 341
Period size: 89 Copynumber: 2.8 Consensus size: 91
87206666 ATTGAAAAGC
87206676 AGAAATTGAAAATACCTCAGC-GTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
87206739 TTGACAAACAGAAATTAAAAACG-AA
66 TTGAAAAACAAAAATTAAAAACGAAA
*
87206764 AG---TTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
87206826 TTTGACAAACAAAAATTAAAAACGAAA
65 TTTGAAAAACAAAAATTAAAAACGAAA
** * *
87206853 ATTAA---AAAATACCTCAGCATGTGAGCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AGAAATTGAAAATACCTCAGCA-GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
87206915 TTTGAAAA
65 TTTGAAAA
87206923 CATGATATTA
Statistics
Matches: 147, Mismatches: 5, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
85 16 0.11
87 3 0.02
88 62 0.42
89 66 0.45
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (91 bp):
AGAAATTGAAAATACCTCAGCAGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
TTGAAAAACAAAAATTAAAAACGAAA
Found at i:87206805 original size:88 final size:87
Alignment explanation
Indices: 87206701--87206933 Score: 387
Period size: 89 Copynumber: 2.6 Consensus size: 87
87206691 CTCAGCGTGC
87206701 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAACGAAAG
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAACGAAA-
87206766 TTGAAAATACCTCAGCATGTGAG
65 TTGAAAATACCTCAGCATGTGAG
*
87206789 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTAAAAACGAAAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAACG-AAA
*
87206854 TTAAAAAATACCTCAGCATGTGAG
65 TT-GAAAATACCTCAGCATGTGAG
* *
87206878 CCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACATGATATTAA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA-GAAATTAA
87206934 GAATACCTCA
Statistics
Matches: 137, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
88 67 0.49
89 70 0.51
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (87 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTAAAAACGAAAT
TGAAAATACCTCAGCATGTGAG
Found at i:87206933 original size:89 final size:88
Alignment explanation
Indices: 87206678--87206933 Score: 403
Period size: 88 Copynumber: 2.9 Consensus size: 88
87206668 TGAAAAGCAG
* *
87206678 AAATTGAAAATACCTCAGC--GTG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTAAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
87206740 TGACAAACAGAAATTAAAAACGA
66 TGACAAACAGAAATTAAAAACGA
* *
87206763 AAGTTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTAAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
87206828 TGACAAACAAAAATTAAAAACGA
66 TGACAAACAGAAATTAAAAACGA
*
87206851 AAATTAAAAAATACCTCAGCATGTGAGCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AAATT-AAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
*
87206916 TTGA-AAACATGATATTAA
65 TTGACAAACA-GAAATTAA
87206934 GAATACCTCA
Statistics
Matches: 158, Mismatches: 8, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
85 18 0.11
87 3 0.02
88 70 0.44
89 67 0.42
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (88 bp):
AAATTAAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGACAAACAGAAATTAAAAACGA
Found at i:87219368 original size:10 final size:9
Alignment explanation
Indices: 87219353--87219422 Score: 58
Period size: 9 Copynumber: 7.7 Consensus size: 9
87219343 GTAGAAAAAG
87219353 ATAATACTAC
1 ATAATA-TAC
87219363 ATAATATAC
1 ATAATATAC
*
87219372 ATATATATAT
1 ATA-ATATAC
87219382 ATAATA-AC
1 ATAATATAC
87219390 ATATATATAC
1 ATA-ATATAC
87219400 -TAATATGA-
1 ATAATAT-AC
87219408 ATAATGATAC
1 ATAAT-ATAC
87219418 -TAATA
1 ATAATA
87219423 CTAGTAATAA
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
8 9 0.18
9 24 0.47
10 18 0.35
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.36
Consensus pattern (9 bp):
ATAATATAC
Found at i:87219405 original size:12 final size:13
Alignment explanation
Indices: 87219356--87219405 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
87219346 GAAAAAGATA
87219356 ATACTACATA-AT
1 ATACTACATATAT
*
87219368 ATACATATATATAT
1 ATAC-TACATATAT
*
87219382 ATAATAACATATAT
1 ATACT-ACATATAT
87219396 ATACTA-ATAT
1 ATACTACATAT
87219406 GAATAATGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
12 8 0.26
13 7 0.23
14 16 0.52
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (13 bp):
ATACTACATATAT
Found at i:87220263 original size:2 final size:2
Alignment explanation
Indices: 87220258--87220320 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
87220248 TATATTTTGG
87220258 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87220300 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
87220321 GGGAAAATAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:87224158 original size:60 final size:59
Alignment explanation
Indices: 87224057--87224173 Score: 171
Period size: 60 Copynumber: 2.0 Consensus size: 59
87224047 GGGTGAGATG
* *
87224057 TTAATGTAAATCTGTATTTTACCATGTAAATTAGGCTATAACTTAAGATTTTAACTATT
1 TTAATGTAAATCTGTATTTTACCATGCAAATTAAGCTATAACTTAAGATTTTAACTATT
* * * *
87224116 TTAATGTAAATTTGTATTTTTAGCATGCAAATTAAGCTATAACTTAGGATTTTGACTA
1 TTAATGTAAATCTGTA-TTTTACCATGCAAATTAAGCTATAACTTAAGATTTTAACTA
87224174 GTTAGTTTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
59 15 0.29
60 36 0.71
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (59 bp):
TTAATGTAAATCTGTATTTTACCATGCAAATTAAGCTATAACTTAAGATTTTAACTATT
Found at i:87224778 original size:23 final size:23
Alignment explanation
Indices: 87224714--87224778 Score: 55
Period size: 23 Copynumber: 2.9 Consensus size: 23
87224704 ATGAATGTGT
* *
87224714 ATTTGAAATAATTATTTAA-AAT
1 ATTTGAAATAATTAATTAATAAC
* *
87224736 ATTTCACATATAA--AAATAATAAC
1 ATTTGA-A-ATAATTAATTAATAAC
87224759 ATTTGAAATAATTAATTAAT
1 ATTTGAAATAATTAATTAAT
87224779 TTTATAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 9
0.68 0.13 0.19
Matches are distributed among these distances:
21 4 0.12
22 10 0.31
23 14 0.44
24 4 0.12
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (23 bp):
ATTTGAAATAATTAATTAATAAC
Found at i:87224856 original size:21 final size:21
Alignment explanation
Indices: 87224813--87224856 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
87224803 GCCAGGTGAA
*
87224813 AAAATGATAATTTTTATACAT
1 AAAATGATAATTTTTATAAAT
*
87224834 AAAAT-ATAATTATTTTTAAAT
1 AAAATGATAATT-TTTATAAAT
87224855 AA
1 AA
87224857 TTATTTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
AAAATGATAATTTTTATAAAT
Found at i:87232161 original size:32 final size:31
Alignment explanation
Indices: 87232125--87232190 Score: 98
Period size: 30 Copynumber: 2.1 Consensus size: 31
87232115 TTATTTCCCT
87232125 TTCAAATTCACCTTATTTTTCATTTGAGAATA
1 TTCAAATT-ACCTTATTTTTCATTTGAGAATA
* *
87232157 TTC-AATTTCCTTATTTTTCATTTGATAATA
1 TTCAAATTACCTTATTTTTCATTTGAGAATA
87232187 TTCA
1 TTCA
87232191 GTTTCTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 24 0.77
31 4 0.13
32 3 0.10
ACGTcount: A:0.29, C:0.15, G:0.05, T:0.52
Consensus pattern (31 bp):
TTCAAATTACCTTATTTTTCATTTGAGAATA
Found at i:87232169 original size:30 final size:30
Alignment explanation
Indices: 87232135--87232200 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
87232125 TTCAAATTCA
87232135 CCTTATTTTTCATTTGAGAATATTCAATTT
1 CCTTATTTTTCATTTGAGAATATTCAATTT
* *
87232165 CCTTATTTTTCATTTGATAATATTCAGTTT
1 CCTTATTTTTCATTTGAGAATATTCAATTT
*
87232195 CTTTAT
1 CCTTAT
87232201 CAAAAACAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.24, C:0.14, G:0.06, T:0.56
Consensus pattern (30 bp):
CCTTATTTTTCATTTGAGAATATTCAATTT
Found at i:87235221 original size:42 final size:43
Alignment explanation
Indices: 87235118--87235225 Score: 146
Period size: 42 Copynumber: 2.5 Consensus size: 43
87235108 GGCTTTATCG
87235118 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTA-TTCAGGCACCTCGTGTGTCGT
* ** *
87235162 ATCAGGCACCTCGTGTGTTGTA-TCAGGCACCTCGTGTGTCGT
1 ATCAGGCACTTTATGTGTCGTATTCAGGCACCTCGTGTGTCGT
* *
87235204 TTTAGGCACTTTATGTGTCGTA
1 ATCAGGCACTTTATGTGTCGTA
87235226 CACTGATCAG
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 36 0.67
44 18 0.33
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (43 bp):
ATCAGGCACTTTATGTGTCGTATTCAGGCACCTCGTGTGTCGT
Found at i:87235224 original size:21 final size:21
Alignment explanation
Indices: 87235131--87235212 Score: 119
Period size: 21 Copynumber: 3.8 Consensus size: 21
87235121 AGGCACTTTA
87235131 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
87235154 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
*
87235175 TGTGTTGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* *
87235196 TGTGTCGTTTTAGGCAC
1 TGTGTCGTATCAGGCAC
87235213 TTTATGTGTC
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
21 46 0.84
23 9 0.16
ACGTcount: A:0.13, C:0.24, G:0.28, T:0.34
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:87249716 original size:21 final size:21
Alignment explanation
Indices: 87249688--87249743 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
87249678 AACAGCGGTG
* *
87249688 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGCA
* *
87249709 GTGGTGAGATTGGATACTGCA
1 GCGGTGAGATTAGATACTGCA
87249730 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
87249744 AACAATGGTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.09, G:0.38, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGCA
Found at i:87251170 original size:2 final size:2
Alignment explanation
Indices: 87251163--87251255 Score: 110
Period size: 2 Copynumber: 50.0 Consensus size: 2
87251153 TCTTTTGTTT
87251163 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
87251205 TA AA AA TA TA AA TA TA -A TA TA -A TA TA -A TA TA -A TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
87251242 TA TA -A TA TA -A TA TA
1 TA TA TA TA TA TA TA TA
87251256 ATGTAATGTT
Statistics
Matches: 80, Mismatches: 4, Indels: 14
0.82 0.04 0.14
Matches are distributed among these distances:
1 7 0.09
2 73 0.91
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
TA
Found at i:87251256 original size:10 final size:10
Alignment explanation
Indices: 87251166--87251295 Score: 120
Period size: 10 Copynumber: 12.3 Consensus size: 10
87251156 TTTGTTTTAT
87251166 ATATATATATA
1 ATATA-ATATA
87251177 TATATATATATA
1 -ATATA-ATATA
87251189 TATATATATATA
1 -ATATA-ATATA
87251201 TATATAA-A-A
1 -ATATAATATA
87251210 ATATAAATATA
1 ATAT-AATATA
87251221 ATATAATATA
1 ATATAATATA
87251231 ATATAATATA
1 ATATAATATA
87251241 ATATAATATA
1 ATATAATATA
*
87251251 ATATAATGTA
1 ATATAATATA
* *
87251261 ATGTTTATATA
1 AT-ATAATATA
*
87251272 ATAATAAAATA
1 AT-ATAATATA
*
87251283 ATATATTATA
1 ATATAATATA
87251293 ATA
1 ATA
87251296 AAAATCGTAA
Statistics
Matches: 104, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
8 4 0.04
9 3 0.03
10 48 0.46
11 20 0.19
12 29 0.28
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
ATATAATATA
Found at i:87252050 original size:13 final size:13
Alignment explanation
Indices: 87252032--87252056 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87252022 TTTAATTAAT
87252032 AATTATTTATTTA
1 AATTATTTATTTA
87252045 AATTATTTATTT
1 AATTATTTATTT
87252057 GCTACTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
AATTATTTATTTA
Found at i:87262341 original size:24 final size:24
Alignment explanation
Indices: 87262294--87262342 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
87262284 TAAAATATCG
*
87262294 TGTTCCTTTTAATAAAAAATTATT
1 TGTTCCTTTTAATAAAAAAGTATT
*
87262318 TGTTCCTTTTTAAT-TAAAAGTATT
1 TGTTCC-TTTTAATAAAAAAGTATT
87262342 T
1 T
87262343 ATATTATAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.68
25 7 0.32
ACGTcount: A:0.33, C:0.08, G:0.06, T:0.53
Consensus pattern (24 bp):
TGTTCCTTTTAATAAAAAAGTATT
Found at i:87263040 original size:47 final size:47
Alignment explanation
Indices: 87262936--87263070 Score: 164
Period size: 47 Copynumber: 2.9 Consensus size: 47
87262926 ATGCCATTTA
* * *
87262936 TGGACAAGCCACCACATAGA-TGCCAATAAATGACCACATAACATATCG
1 TGGACAAGCCACCACATA-ATTACCAAT-AACGACCACATAACACATCG
* *
87262984 TGGACAAGCCACCACATAATTTCCAATAACGACCACATAGCACATCG
1 TGGACAAGCCACCACATAATTACCAATAACGACCACATAACACATCG
* * * *
87263031 TGGATAAGCCATCACATAATTACCGATAACAACCACATAA
1 TGGACAAGCCACCACATAATTACCAATAACGACCACATAA
87263071 TCGCAGTTAA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
47 52 0.68
48 24 0.32
ACGTcount: A:0.41, C:0.28, G:0.13, T:0.18
Consensus pattern (47 bp):
TGGACAAGCCACCACATAATTACCAATAACGACCACATAACACATCG
Found at i:87263507 original size:4 final size:4
Alignment explanation
Indices: 87263498--87263530 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
87263488 TAATATACTC
87263498 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
87263531 CATTTATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:87267903 original size:88 final size:88
Alignment explanation
Indices: 87267754--87267926 Score: 337
Period size: 88 Copynumber: 2.0 Consensus size: 88
87267744 GAATTACGGT
*
87267754 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAGGTGATTGAGA
1 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
87267819 TACGTTGTTGATTGTTGATTGGA
66 TACGTTGTTGATTGTTGATTGGA
87267842 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
1 TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
87267907 TACGTTGTTGATTGTTGATT
66 TACGTTGTTGATTGTTGATT
87267927 TATGTCAATT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 84 1.00
ACGTcount: A:0.21, C:0.10, G:0.19, T:0.50
Consensus pattern (88 bp):
TTGGGATTTGCTAATTTCTTATTTATCTTATACTTTTGCTATATCACTTGCTTAAGTGATTGAGA
TACGTTGTTGATTGTTGATTGGA
Found at i:87269521 original size:17 final size:17
Alignment explanation
Indices: 87269499--87269536 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
87269489 CGTAAGCTCA
87269499 TTTGAGACTCAGTTTAG
1 TTTGAGACTCAGTTTAG
87269516 TTTGAGACTCAGTTTAG
1 TTTGAGACTCAGTTTAG
87269533 TTTG
1 TTTG
87269537 TAAATCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.21, C:0.11, G:0.24, T:0.45
Consensus pattern (17 bp):
TTTGAGACTCAGTTTAG
Found at i:87269989 original size:34 final size:33
Alignment explanation
Indices: 87269928--87269996 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
87269918 TAGATAAGTC
*
87269928 GTCCATAAACAAAAAAGTAGATGAAAAACAATT
1 GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
87269961 GTCCATAAACAAAAAAGTAGATGAAAAAAAAATT
1 GTCCATAAACAAAAAAGTAGATG-AAAAAAAATT
87269995 GT
1 GT
87269997 GGGCATAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 23 0.68
34 11 0.32
ACGTcount: A:0.58, C:0.10, G:0.13, T:0.19
Consensus pattern (33 bp):
GTCCATAAACAAAAAAGTAGATGAAAAAAAATT
Found at i:87270989 original size:14 final size:15
Alignment explanation
Indices: 87270964--87270993 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
87270954 GAGTATAGTA
87270964 AAATATTTTAAAAAT
1 AAATATTTTAAAAAT
*
87270979 AAATATTTAAAAAAT
1 AAATATTTTAAAAAT
87270994 GAGAAATTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AAATATTTTAAAAAT
Found at i:87271655 original size:29 final size:28
Alignment explanation
Indices: 87271623--87271677 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
87271613 TTATAAAGTC
*
87271623 TTATTCTTGTAATTTTTTTAAAAAATGGT
1 TTATTCTTGTAA-TATTTTAAAAAATGGT
* *
87271652 TTATTTTTTTAATATTTTAAAAAATG
1 TTATTCTTGTAATATTTTAAAAAATG
87271678 ACATTTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (28 bp):
TTATTCTTGTAATATTTTAAAAAATGGT
Found at i:87274223 original size:14 final size:14
Alignment explanation
Indices: 87274204--87274237 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
87274194 CTAAACCCGA
87274204 AGCCCAACTACCCC
1 AGCCCAACTACCCC
87274218 AGCCCAACTACCCC
1 AGCCCAACTACCCC
87274232 AGCCCA
1 AGCCCA
87274238 TCTGCAACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.29, C:0.56, G:0.09, T:0.06
Consensus pattern (14 bp):
AGCCCAACTACCCC
Found at i:87274835 original size:22 final size:23
Alignment explanation
Indices: 87274810--87274852 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
87274800 CCGGAGCTCC
87274810 CTCCCTCTC-CCCTTTCTTTTCT
1 CTCCCTCTCTCCCTTTCTTTTCT
* *
87274832 CTCCCTTTCTCTCTTTCTTTT
1 CTCCCTCTCTCCCTTTCTTTT
87274853 TTTCTTTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (23 bp):
CTCCCTCTCTCCCTTTCTTTTCT
Found at i:87275290 original size:3 final size:3
Alignment explanation
Indices: 87275284--87275347 Score: 92
Period size: 3 Copynumber: 21.0 Consensus size: 3
87275274 TTTTTCTTAT
* *
87275284 TTA TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
87275332 TTA TTA CTA TGTA TTA
1 TTA TTA TTA T-TA TTA
87275348 GTATACGTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
3 51 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:87275562 original size:26 final size:29
Alignment explanation
Indices: 87275531--87275589 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
87275521 TTTAATATAG
87275531 TATTAT-CT-TTTT-ACTATTA-TATTTAT
1 TATTATCCTATTTTCACTATTATTA-TTAT
*
87275557 TATTATCCTATTTTCACTGTTATTATTAT
1 TATTATCCTATTTTCACTATTATTATTAT
87275586 TATT
1 TATT
87275590 TTCATCATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
28 4 0.14
29 14 0.50
30 2 0.07
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.63
Consensus pattern (29 bp):
TATTATCCTATTTTCACTATTATTATTAT
Found at i:87275600 original size:21 final size:22
Alignment explanation
Indices: 87275553--87275603 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
87275543 ACTATTATAT
*
87275553 TTATTATTATCCTATTTTCACTG
1 TTATTATTAT-CTATTTTCACTA
87275576 TTATTATTAT-TATTTTCA-TCA
1 TTATTATTATCTATTTTCACT-A
87275597 TTATTAT
1 TTATTAT
87275604 ACATATATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 15 0.58
23 10 0.38
ACGTcount: A:0.25, C:0.12, G:0.02, T:0.61
Consensus pattern (22 bp):
TTATTATTATCTATTTTCACTA
Found at i:87288272 original size:70 final size:71
Alignment explanation
Indices: 87288152--87288550 Score: 306
Period size: 70 Copynumber: 5.5 Consensus size: 71
87288142 GTTTTCCAAG
* * * *
87288152 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTAT
87288217 GTTTC-
66 GTTTCA
* ** * *
87288222 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTAT
87288287 GCTTTTTAATTCA
66 G-----T--TTCA
* * * *
87288300 TGAAAATCAGCTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGGGGTAATTTCAATT
1 --AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATT
*
87288364 CATGTTTCA
63 TATGTTTCA
* ** * *
87288373 AAAATCAACTCATATTGCGAGAAGTGAGTTGAACC-CTGGGTACGCTGAGGTAATTTCAATTCCC
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATT--T
* *
87288437 AT-TAAATCT
64 ATGT--TTCA
* * *** * *
87288446 AAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTC-AATT-T
*
87288511 AT-CTT-A
64 ATGTTTCA
* * * *
87288517 AAGAGTCAATTCATATTACGAGAGGTGAGTTGAG
1 AA-AATCAACTCATATTGCGAGAAGTGAGTTGAG
87288551 TCTTTTAATT
Statistics
Matches: 264, Mismatches: 46, Indels: 36
0.76 0.13 0.10
Matches are distributed among these distances:
70 77 0.29
71 33 0.12
72 33 0.12
73 38 0.14
74 19 0.07
75 6 0.02
77 3 0.01
79 2 0.01
80 53 0.20
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (71 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGCTGAGGTAATTTCAATTTAT
GTTTCA
Found at i:87288422 original size:150 final size:145
Alignment explanation
Indices: 87288151--87288481 Score: 497
Period size: 150 Copynumber: 2.3 Consensus size: 145
87288141 TGTTTTCCAA
*
87288151 GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTA
1 GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCA
*
87288216 TGTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTATTTTCA
66 TGTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
** *
87288281 ATTTCTGCTTTTTAATTCAT
131 A-TTC--C-CATTAAATC-T
* *
87288301 GAAAATCAGCTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGGGGTAATTTCAATTCA
1 GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCA
* *
87288366 TGTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAACC-CTGGGTACGCTGAGGTAATTTC
66 TGTTTC-AAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTC
87288430 AATTCCCATTAAATCT
130 AATTCCCATTAAATCT
87288446 -AAAATC-GACTCATATTGCGAGAGGTGAGTTGAGCCT
1 GAAAATCAG-CTCATATTGCGAGAGGTGAGTTGAGCCT
87288482 TGCGGCACGC
Statistics
Matches: 169, Mismatches: 10, Indels: 10
0.89 0.05 0.05
Matches are distributed among these distances:
143 1 0.01
144 33 0.20
145 1 0.01
146 6 0.04
147 1 0.01
149 3 0.02
150 89 0.53
151 35 0.21
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (145 bp):
GAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTCA
TGTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAACCTCGGGGCACGCTGAGGTAATTTCA
ATTCCCATTAAATCT
Found at i:87288675 original size:68 final size:67
Alignment explanation
Indices: 87288589--87288917 Score: 243
Period size: 68 Copynumber: 4.7 Consensus size: 67
87288579 CTTTTTGTTT
87288589 TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCGAAATCT
1 TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCGAAATCT
87288654 AC
66 AC
** * * * ** ***
87288656 TTTTCGAATTATTAACTCATGTTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTC
1 TTTTC-AAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT----TA-ATTTTCGT-TTTTC
87288721 -AAATTCTA-
59 GAAA-TCTAC
* * * * * *
87288729 TCTT-AAAGAGTCAATTCATATTACGAGAGGTGAGTTGAGTCTTTTAA-TTTCTATTTCTGTCTT
1 TTTTCAAAGA-TCAACTCATATTGCGAGAGGTGAGTTGAG-CCTTTAATTTTC-GTTT-T-TC-G
*** * **
87288792 TTTTGTTT
60 AAATCTAC
*
87288800 TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTCAGCCTTTAATTTTCGTTTTTCGAAATCT
1 TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCGAAATCT
87288865 AC
66 AC
** * *
87288867 TTTTCGAATTATTAACTCATGTTGCGAGAGGTGAGTTGAGCCTTTTAATTT
1 TTTTC-AAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TTTAATTT
87288918 CTACGTTTCA
Statistics
Matches: 195, Mismatches: 47, Indels: 38
0.70 0.17 0.14
Matches are distributed among these distances:
67 15 0.08
68 69 0.35
69 12 0.06
70 11 0.06
71 36 0.18
72 31 0.16
73 12 0.06
74 9 0.05
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.41
Consensus pattern (67 bp):
TTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCGAAATCT
AC
Found at i:87288899 original size:211 final size:215
Alignment explanation
Indices: 87288453--87288910 Score: 843
Period size: 211 Copynumber: 2.1 Consensus size: 215
87288443 TCTAAAATCG
*
87288453 ACTCATATTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCTATCTTAA
1 ACTCATGTTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCTATCTTAA
*
87288518 AGAGTCAATTCATATTACGAGAGGTGAGTTGAGTCTTTTAATTTCTATTTTCAATTTCTGTCTTT
66 AGAGTCAATTCATATTACGAGAGGTGAGTTGAGTCTTTTAATTTCTATTTTC-ATGTC-GTCTTT
*
87288583 TTGTTTTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTAATTTTCGTTTTTCG
129 TTGTTTTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTCAGCCTTTAATTTTCGTTTTTCG
87288648 AAATCTACTTTTCGAATTATTA
194 AAATCTACTTTTCGAATTATTA
87288670 ACTCATGTTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCTATCTTAA
1 ACTCATGTTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCTATCTTAA
87288735 AGAGTCAATTCATATTACGAGAGGTGAGTTGAGTCTTTTAATTTCTA-TTTC-TGTC-T-TTTTT
66 AGAGTCAATTCATATTACGAGAGGTGAGTTGAGTCTTTTAATTTCTATTTTCATGTCGTCTTTTT
87288796 GTTTTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTCAGCCTTTAATTTTCGTTTTTCGAA
131 GTTTTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTCAGCCTTTAATTTTCGTTTTTCGAA
87288861 ATCTACTTTTCGAATTATTA
196 ATCTACTTTTCGAATTATTA
87288881 ACTCATGTTGCGAGAGGTGAGTTGAGCCTT
1 ACTCATGTTGCGAGAGGTGAGTTGAGCCTT
87288911 TTAATTTCTA
Statistics
Matches: 238, Mismatches: 3, Indels: 6
0.96 0.01 0.02
Matches are distributed among these distances:
211 119 0.50
212 1 0.00
214 3 0.01
216 4 0.02
217 111 0.47
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.41
Consensus pattern (215 bp):
ACTCATGTTGCGAGAGGTGAGTTGAGCCTTGCGGCACGCTAAGGTATTTTCAAATTCTATCTTAA
AGAGTCAATTCATATTACGAGAGGTGAGTTGAGTCTTTTAATTTCTATTTTCATGTCGTCTTTTT
GTTTTTTTCAAAGATCAACTCATATTGCGAGAGGTGAGTTCAGCCTTTAATTTTCGTTTTTCGAA
ATCTACTTTTCGAATTATTA
Found at i:87289643 original size:14 final size:14
Alignment explanation
Indices: 87289624--87289651 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87289614 CAATAAGCTC
87289624 ACTACCCCAGCCCA
1 ACTACCCCAGCCCA
87289638 ACTACCCCAGCCCA
1 ACTACCCCAGCCCA
87289652 TCTGCAACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.57, G:0.07, T:0.07
Consensus pattern (14 bp):
ACTACCCCAGCCCA
Found at i:87290250 original size:22 final size:23
Alignment explanation
Indices: 87290225--87290267 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
87290215 CCGGAGCTCC
87290225 CTCCCTCTC-CCCTTTCTTTTCT
1 CTCCCTCTCTCCCTTTCTTTTCT
* *
87290247 CTCCCTTTCTCTCTTTCTTTT
1 CTCCCTCTCTCCCTTTCTTTT
87290268 TTTCTTTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (23 bp):
CTCCCTCTCTCCCTTTCTTTTCT
Found at i:87290704 original size:3 final size:3
Alignment explanation
Indices: 87290698--87290761 Score: 92
Period size: 3 Copynumber: 21.0 Consensus size: 3
87290688 TTTTTCTTAT
* *
87290698 TTA TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTG TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
87290746 TTA TTA CTA TGTA TTA
1 TTA TTA TTA T-TA TTA
87290762 GTATACGTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
3 51 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:87290976 original size:26 final size:29
Alignment explanation
Indices: 87290945--87291003 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
87290935 TTTAATATAG
87290945 TATTAT-CT-TTTT-ACTATTA-TATTTAT
1 TATTATCCTATTTTCACTATTATTA-TTAT
*
87290971 TATTATCCTATTTTCACTGTTATTATTAT
1 TATTATCCTATTTTCACTATTATTATTAT
87291000 TATT
1 TATT
87291004 TTCATCATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 6 0.21
27 2 0.07
28 4 0.14
29 14 0.50
30 2 0.07
ACGTcount: A:0.25, C:0.10, G:0.02, T:0.63
Consensus pattern (29 bp):
TATTATCCTATTTTCACTATTATTATTAT
Found at i:87291014 original size:21 final size:22
Alignment explanation
Indices: 87290967--87291017 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 22
87290957 ACTATTATAT
*
87290967 TTATTATTATCCTATTTTCACTG
1 TTATTATTAT-CTATTTTCACTA
87290990 TTATTATTAT-TATTTTCA-TCA
1 TTATTATTATCTATTTTCACT-A
87291011 TTATTAT
1 TTATTAT
87291018 ACATATATGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.04
21 15 0.58
23 10 0.38
ACGTcount: A:0.25, C:0.12, G:0.02, T:0.61
Consensus pattern (22 bp):
TTATTATTATCTATTTTCACTA
Found at i:87294025 original size:39 final size:40
Alignment explanation
Indices: 87293835--87294076 Score: 310
Period size: 40 Copynumber: 6.1 Consensus size: 40
87293825 CGGAATACAA
* ** * * *
87293835 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
87293875 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
87293915 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
87293955 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
87293995 CCGGATATATC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
** * *
87294034 CCGGATATAATTACTAGCATAAATG-CTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
87294073 CCGG
1 CCGG
87294077 GTACCATTCA
Statistics
Matches: 182, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 48 0.26
40 134 0.74
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:87301189 original size:40 final size:40
Alignment explanation
Indices: 87301124--87301367 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
87301114 CGGAATACAA
* ** * * *
87301124 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
87301164 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
87301204 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
87301244 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
87301284 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
87301324 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
87301364 CCGG
1 CCGG
87301368 GTATCATTCA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 181 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:87307876 original size:136 final size:137
Alignment explanation
Indices: 87307657--87307921 Score: 374
Period size: 136 Copynumber: 1.9 Consensus size: 137
87307647 TTCACGATTG
* * *
87307657 TTTAAAACGAAGGCGATATTCGATACTTGATAATTCGTGGAATCGTGCCCTAACGTATTGGGTTG
1 TTTAAAACGAAGGCGAGATTCGATACTTGACAATTCGCGGAATCGTGCCCTAACGTATTGGGTTG
*
87307722 CAATTTCACGTTGACTCAAAATAATCGAAT-ATCCCTTCAAAATTTCACTCATATCTT-TAAAAA
66 CAATTTCACGTTGACTCAAAATAATCAAATGA-CCCTTCAAAATTTCACTCATATCTTCTAAAAA
87307785 AAAAATTC
130 AAAAATTC
* * * * * *
87307793 TTTAAAACGAAGGCGAGGTTTGATATTTGGCAATTCGCGGAATCGTGCCCTAATGTGTTGGGTTG
1 TTTAAAACGAAGGCGAGATTCGATACTTGACAATTCGCGGAATCGTGCCCTAACGTATTGGGTTG
* * *
87307858 CAATTTCTCGTTTG-CTCAAAATAATCAAATGACCCTTCAAAATTTCACTCGTGTCTTCTAAAAA
66 CAATTTCACG-TTGACTCAAAATAATCAAATGACCCTTCAAAATTTCACTCATATCTTCTAAAAA
87307922 TCCTTTAAAA
Statistics
Matches: 113, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
136 103 0.91
137 10 0.09
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (137 bp):
TTTAAAACGAAGGCGAGATTCGATACTTGACAATTCGCGGAATCGTGCCCTAACGTATTGGGTTG
CAATTTCACGTTGACTCAAAATAATCAAATGACCCTTCAAAATTTCACTCATATCTTCTAAAAAA
AAAATTC
Found at i:87308006 original size:131 final size:131
Alignment explanation
Indices: 87307688--87308180 Score: 377
Period size: 131 Copynumber: 3.7 Consensus size: 131
87307678 GATACTTGAT
* * ** * * * *
87307688 AATTCGTGGAATCGTGCCCTAACGTATTGGGTTGCAATTTCAC-GTTGACTCAAAATAATCGAAT
1 AATTCG-GGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTG-CTCAAAATAATCAAAT
* * * ** * * ** *
87307752 ATCCCTTCAAAATTTCACTCATATCTTTAAAAAAAAAATTCTTT-AAAACGAAGGCGAGGTTTGA
64 ATCCCTTCAGAATTTCACTCGT-GC-TT--ACTAAAAA-CCTTTCAAAACGAAGGCAAGACTCGA
*
87307816 TATTTGGC
124 TGTTTGGC
* * * *
87307824 AATTCGCGGAATCGTGCCCTAAT-GTGTTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCAAAT
1 AATTCG-GGAATCATGCCCT-ATCGTGCTGGGTTGCGATTTCTCATTTGCTCAAAATAATCAAAT
* * * *
87307888 GA-CCCTTCAAAATTTCACTCGTGTCTT-CTAAAAATCCTTT-AAAACGGAGGCAATACTCGGTG
64 -ATCCCTTCAGAATTTCACTCGTG-CTTACTAAAAA-CCTTTCAAAACGAAGGCAAGACTCGATG
*
87307950 TTTGAC
126 TTTGGC
* * *
87307956 AATTCGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGCTCAAAACAATCGAATAT
1 AATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTCAAAATAATCAAATAT
* * ** * * * * **
87308021 TCCTTTAGGTTTTCACGCATGCTTATTAAAAACCTTTCAAAACGAAGGCGAGGTTCGATGTTTGG
66 CCCTTCAGAATTTCACTCGTGCTTACTAAAAACCTTTCAAAACGAAGGCAAGACTCGATGTTTGG
87308086 C
131 C
* * * * * *
87308087 GATTTGAGAATCATGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAAATAATCAAATAT
1 AATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTCAAAATAATCAAATAT
* * * *
87308152 CTCTTCGGAATTTCACTCGTACTTTCTAA
66 CCCTTCAGAATTTCACTCGTGCTTACTAA
87308181 GGTGAGGCAA
Statistics
Matches: 287, Mismatches: 62, Indels: 21
0.78 0.17 0.06
Matches are distributed among these distances:
130 11 0.04
131 162 0.56
132 35 0.12
135 2 0.01
136 72 0.25
137 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (131 bp):
AATTCGGGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGCTCAAAATAATCAAATAT
CCCTTCAGAATTTCACTCGTGCTTACTAAAAACCTTTCAAAACGAAGGCAAGACTCGATGTTTGG
C
Found at i:87325545 original size:21 final size:20
Alignment explanation
Indices: 87325511--87325568 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 20
87325501 GTTTTGTTTA
87325511 TTTATTTATTTATTTCATGT
1 TTTATTTATTTATTTCATGT
* *
87325531 TTTATTTCTTTTATTTTATGT
1 TTTATTT-ATTTATTTCATGT
87325552 TATTATATTATTATATT
1 T-TTAT-TTATT-TATT
87325569 ATATAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 7 0.23
21 12 0.39
22 6 0.19
23 6 0.19
ACGTcount: A:0.22, C:0.03, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTATTTATTTATTTCATGT
Found at i:87331528 original size:46 final size:46
Alignment explanation
Indices: 87331475--87331650 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
87331465 TTGTTGAGCA
*
87331475 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
87331521 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-C--A-GAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCAA--A--CG
*
87331568 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
87331614 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87331651 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
45 2 0.02
46 63 0.56
47 29 0.26
48 2 0.02
50 7 0.06
51 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:87331631 original size:93 final size:93
Alignment explanation
Indices: 87331472--87331642 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
87331462 GGATTGTTGA
* * *
87331472 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
87331537 TGAGTCCGAGTTCCAGAGATGTAACTAG
66 TGAGTCCGAGTTCCAGAGATGTAACTAG
*
87331565 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
87331630 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
87331643 GCTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCCAGAGATGTAACTAG
Found at i:87343674 original size:5 final size:5
Alignment explanation
Indices: 87343664--87343697 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
87343654 ACAAGATGTG
87343664 AAAAT AAAAT AAAAT AAAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAA
87343698 GAACACACAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:87343685 original size:16 final size:16
Alignment explanation
Indices: 87343664--87343697 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
87343654 ACAAGATGTG
87343664 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
87343680 AAAATAAAATAAAATA
1 AAAATAAAATAAAATA
87343696 AA
1 AA
87343698 GAACACACAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:87346565 original size:55 final size:54
Alignment explanation
Indices: 87346478--87346732 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
87346468 ATTAGGGTTT
* *
87346478 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
87346533 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
87346588 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
87346641 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
87346690 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
87346733 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 23, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
49 39 0.23
52 7 0.04
53 41 0.24
54 12 0.07
55 67 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:87346684 original size:108 final size:110
Alignment explanation
Indices: 87346488--87346685 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
87346478 AAGGATACCG
*
87346488 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
87346553 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
87346598 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
87346660 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
87346686 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.58
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:87346945 original size:16 final size:16
Alignment explanation
Indices: 87346924--87346954 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87346914 ATAAATTTGA
87346924 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
87346940 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
87346955 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:87354150 original size:53 final size:52
Alignment explanation
Indices: 87353979--87354174 Score: 212
Period size: 55 Copynumber: 3.6 Consensus size: 52
87353969 GGATACCGTG
* * * * *
87353979 TAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCTTAAGGCAAGGAAATCATT
1 TAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTCATAAGGCAAGG-TACCATA
* * * *
87354034 TAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCATG
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAGGTACCATA
* *
87354089 TAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGCTACCATA
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGG-TACCATA
* *
87354142 TAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGACCATGCCAAGACATGGCATTGGTAAGTT
87354175 TCAAAAGGAT
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.03
53 44 0.37
54 9 0.08
55 58 0.49
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.23
Consensus pattern (52 bp):
TAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGGTACCATA
Found at i:87354173 original size:108 final size:110
Alignment explanation
Indices: 87353977--87354174 Score: 310
Period size: 108 Copynumber: 1.8 Consensus size: 110
87353967 AAGGATACCG
* * *
87353977 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCTTAAGGCAAGGAAATCATTTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATATAAGACCA
*
87354042 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* **
87354087 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-GTTCATAAGGCAAGGCTACCATATAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATATAAGACCA
*
87354150 TGTCAAGACATGGCAATGGTAAGTT
66 TGTCAAGACATGGCAATGATAAGTT
87354175 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 49 0.61
109 7 0.09
110 24 0.30
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTCATAAGGCAAGGAAACCATATAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:87354439 original size:16 final size:16
Alignment explanation
Indices: 87354418--87354448 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87354408 ATAAATTTGA
87354418 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
87354434 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
87354449 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:87360287 original size:22 final size:23
Alignment explanation
Indices: 87360261--87360328 Score: 84
Period size: 23 Copynumber: 3.0 Consensus size: 23
87360251 CTGAGTTGAT
*
87360261 AAACGGTAAGCTCCGAAGAGCTG
1 AAACGGTAAGCTCAGAAGAGCTG
**
87360284 -AACGGTAAGCTCATTAGAGCTG
1 AAACGGTAAGCTCAGAAGAGCTG
* *
87360306 AAACGGTAAGCTCATACGAGCTG
1 AAACGGTAAGCTCAGAAGAGCTG
87360329 TGGTGAGTCT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
22 19 0.49
23 20 0.51
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.18
Consensus pattern (23 bp):
AAACGGTAAGCTCAGAAGAGCTG
Found at i:87360314 original size:23 final size:22
Alignment explanation
Indices: 87360261--87360328 Score: 86
Period size: 22 Copynumber: 3.0 Consensus size: 22
87360251 CTGAGTTGAT
87360261 AAACGGTAAGCTCCGA-AGAGCTG
1 AAACGGTAAGCT-C-ATAGAGCTG
87360284 -AACGGTAAGCTCATTAGAGCTG
1 AAACGGTAAGCTCA-TAGAGCTG
87360306 AAACGGTAAGCTCATACGAGCTG
1 AAACGGTAAGCTCATA-GAGCTG
87360329 TGGTGAGTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 20 0.49
23 19 0.46
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.18
Consensus pattern (22 bp):
AAACGGTAAGCTCATAGAGCTG
Found at i:87363764 original size:42 final size:42
Alignment explanation
Indices: 87363705--87363786 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
87363695 GCGCCATACT
87363705 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTTA
1 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTTA
87363747 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTT
1 ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTT
87363787 CAGAAATATA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (42 bp):
ATGTCTCTGATGCTTTCGACACCTGAGATATTGATTACTTTA
Found at i:87366896 original size:41 final size:41
Alignment explanation
Indices: 87366849--87366934 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
87366839 ATAGCCATGT
87366849 TTAGCCTCATTTTAGGAGGCTTGGCCAAGTGAGCCACTTAG
1 TTAGCCTCATTTTAGGAGGCTTGGCCAAGTGAGCCACTTAG
87366890 TTAGCCTCATTTTAGGAGGCTTGGCCAAGTGAGCCACTTAG
1 TTAGCCTCATTTTAGGAGGCTTGGCCAAGTGAGCCACTTAG
87366931 TTAG
1 TTAG
87366935 TTTTGTGATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (41 bp):
TTAGCCTCATTTTAGGAGGCTTGGCCAAGTGAGCCACTTAG
Found at i:87366960 original size:12 final size:12
Alignment explanation
Indices: 87366943--87366967 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
87366933 AGTTTTGTGA
87366943 TTTTATTTTATT
1 TTTTATTTTATT
87366955 TTTTATTTTATT
1 TTTTATTTTATT
87366967 T
1 T
87366968 CAATTTAGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTATTTTATT
Found at i:87370760 original size:20 final size:20
Alignment explanation
Indices: 87370735--87370793 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
87370725 TAAATATGGT
87370735 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
87370755 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
87370775 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
87370794 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:87370874 original size:23 final size:24
Alignment explanation
Indices: 87370844--87370938 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
87370834 GAGGAAGTGA
87370844 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
87370867 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
87370891 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
87370915 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87370939 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:87370912 original size:47 final size:49
Alignment explanation
Indices: 87370845--87370938 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
87370835 AGGAAGTGAA
*
87370845 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
87370892 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
87370939 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:87371191 original size:38 final size:38
Alignment explanation
Indices: 87371130--87371292 Score: 232
Period size: 38 Copynumber: 4.4 Consensus size: 38
87371120 CGTTTACAGT
87371130 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
* *
87371168 AAAGGCTTCGG-CC-----TA-GTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
87371199 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
87371237 AAAGGCTTCGGCCCAGTATTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
*
87371275 AAAGGGCTACGGCCCAGT
1 AAA-GGCTTCGGCCCAGT
87371293 GCATGATTGA
Statistics
Matches: 111, Mismatches: 6, Indels: 15
0.84 0.05 0.11
Matches are distributed among these distances:
31 25 0.23
32 4 0.04
37 4 0.04
38 65 0.59
39 13 0.12
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (38 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
Found at i:87371192 original size:31 final size:31
Alignment explanation
Indices: 87371154--87371269 Score: 124
Period size: 31 Copynumber: 3.5 Consensus size: 31
87371144 AGTATTATGA
87371154 AATATGAAACATGAAAAGGCTTCGGCCTAGT
1 AATATGAAACATGAAAAGGCTTCGGCCTAGT
* *
87371185 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAACATGAAAAGGCTTCGG-CC-----TA-GT
*
87371223 AATATGAAACATGAAAAGGCTTCGGCCCAGT
1 AATATGAAACATGAAAAGGCTTCGGCCTAGT
* *
87371254 ATTATGAAATATGAAA
1 AATATGAAACATGAAA
87371270 TATGAAAAGG
Statistics
Matches: 71, Mismatches: 7, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
31 39 0.55
32 3 0.04
37 4 0.06
38 25 0.35
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (31 bp):
AATATGAAACATGAAAAGGCTTCGGCCTAGT
Found at i:87371203 original size:69 final size:69
Alignment explanation
Indices: 87371130--87371269 Score: 262
Period size: 69 Copynumber: 2.0 Consensus size: 69
87371120 CGTTTACAGT
*
87371130 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCTAGTAATATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
87371195 ATGA
66 ATGA
*
87371199 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGAAAT
1 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
87371264 ATGA
66 ATGA
87371268 AA
1 AA
87371270 TATGAAAAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.24
Consensus pattern (69 bp):
AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGAAAAGGCTTCGGCCCAGTAATATGAAAT
ATGA
Found at i:87377698 original size:25 final size:25
Alignment explanation
Indices: 87377669--87377716 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
87377659 TTATAATATG
* * *
87377669 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
87377694 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
87377717 GTTTATGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:87377785 original size:20 final size:20
Alignment explanation
Indices: 87377760--87377818 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
87377750 TAAATATGGT
87377760 ATGTATGATATGCACATGAA
1 ATGTATGATATGCACATGAA
* *
87377780 ATGTATGATACGCACATGAT
1 ATGTATGATATGCACATGAA
87377800 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
87377819 GGTAATCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAA
Found at i:87377899 original size:23 final size:24
Alignment explanation
Indices: 87377869--87377963 Score: 124
Period size: 24 Copynumber: 4.0 Consensus size: 24
87377859 GAGGAAGTGA
87377869 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
87377892 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
87377916 GAAAGGGCTT-TGGCCCCAGTTATT
1 AAAAGGGCTTAT-GCCCCAGTTATT
*
87377940 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
87377964 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
23 23 0.36
24 30 0.47
25 11 0.17
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:87377937 original size:47 final size:49
Alignment explanation
Indices: 87377870--87377963 Score: 133
Period size: 47 Copynumber: 2.0 Consensus size: 49
87377860 AGGAAGTGAA
*
87377870 AAAGGGCTTATGCCCCAGTTA-TAAAAG-GGCTTATGCC-CCAGTTATTG
1 AAAGGGCTTATGCCCCAGTTATTAAAAGAGGC-TAGGCCTCCAGTTATTG
87377917 AAAGGGCTT-TGGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
1 AAAGGGCTTAT-GCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTAT
87377964 ATGATAAAGC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.02
47 19 0.45
48 11 0.26
49 11 0.26
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (49 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAGAGGCTAGGCCTCCAGTTATTG
Found at i:87378189 original size:31 final size:31
Alignment explanation
Indices: 87378154--87378285 Score: 151
Period size: 31 Copynumber: 4.1 Consensus size: 31
87378144 CGTTTACAGT
87378154 AAAGGCTTCGGCCCAGTAAATATGAAACATG-
1 AAAGGCTTCGGCCCAGT-AATATGAAACATGA
*
87378185 AAAGGCTTCGG-CCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
87378215 AAAGGCTTCGGCCCAGTATTATGAAATATGAAACATGA
1 AAAGGCTTCGGCCCAG-----T--AATATGAAACATGA
* *
87378253 AAAGGCTTCGGCCCAGTATTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAACATGA
87378284 AA
1 AA
87378286 TATGAAAAGG
Statistics
Matches: 88, Mismatches: 4, Indels: 18
0.80 0.04 0.16
Matches are distributed among these distances:
29 12 0.14
30 16 0.18
31 29 0.33
33 1 0.01
36 1 0.01
38 29 0.33
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAACATGA
Found at i:87378253 original size:38 final size:38
Alignment explanation
Indices: 87378201--87378308 Score: 189
Period size: 38 Copynumber: 2.8 Consensus size: 38
87378191 TTCGGCCAGT
87378201 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
87378239 AATATGAAACATGAAAAGGCTTCGGCCCAGTATTATGA
1 AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
*
87378277 AATATGAAATATGAAAAGGGCTACGGCCCAGT
1 AATATGAAATATGAAAA-GGCTTCGGCCCAGT
87378309 GCATGATTGA
Statistics
Matches: 66, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
38 53 0.80
39 13 0.20
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.23
Consensus pattern (38 bp):
AATATGAAATATGAAAAGGCTTCGGCCCAGTATTATGA
Done.