Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 289 of 325
Found at i:88993935 original size:3 final size:3
Alignment explanation
Indices: 88993927--88994173 Score: 125
Period size: 3 Copynumber: 83.3 Consensus size: 3
88993917 GTACTGCTTC
88993927 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TCA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
* * ** *
88993972 TACA TAT ATAT TAT TAT T-T ATAT TAT TAC TAT CCT T-T TCAT TCT TAT
1 TA-T TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT T-AT TAT TAT
* * * * * * *
88994019 TTT TAT TAA TAT TAT TAT TA- TAA TCT TAT T-T TAT AAC TAT TAT CAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * * *
88994065 T-T TTT TAA AAT TAT TGT TAC TAT TAT TCT T-T TAC CAT T-T AAT ACAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * * * *
88994111 TAT TAT TAC TAT TTT TGT TAT TAT TAT TAT TAC TAT T-G TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
88994158 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
88994174 TTTTGTATTT
Statistics
Matches: 180, Mismatches: 49, Indels: 30
0.69 0.19 0.12
Matches are distributed among these distances:
2 14 0.08
3 155 0.86
4 11 0.06
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:88994059 original size:11 final size:14
Alignment explanation
Indices: 88994013--88994054 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
88994003 TCCTTTTCAT
*
88994013 TCTTATTTTTATTAA
1 TCTTATTATTA-TAA
*
88994028 TATTATTATTATAA
1 TCTTATTATTATAA
88994042 TCTTATT-TTATAA
1 TCTTATTATTATAA
88994055 CTATTATCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 6 0.25
14 9 0.38
15 9 0.38
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (14 bp):
TCTTATTATTATAA
Found at i:88994348 original size:3 final size:3
Alignment explanation
Indices: 88994327--88994573 Score: 223
Period size: 3 Copynumber: 81.7 Consensus size: 3
88994317 TCAACTTTAG
* * **
88994327 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ATT ACT ATTT ATT ATT ACC
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * *
88994374 ATT ATT ATT ACT ATT ACT ATT ACT ATT ACT ATT ACTT -TT ACTT -TT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT A-TT ATT
* * * * * *
88994419 ATT ACT ATC ACT A-T ATT ATT ATT ATT TTT ATT TTCT ATT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT
* * * * * *
88994464 ATC ATT ATT ATT ATT ACT AAT ATT AAT ATT CTT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
88994512 ATT ATC ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
88994560 ATT ATT ATT ATT AT
1 ATT ATT ATT ATT AT
88994574 CGTTCTCATT
Statistics
Matches: 194, Mismatches: 40, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
2 7 0.04
3 175 0.90
4 12 0.06
ACGTcount: A:0.31, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:89001386 original size:64 final size:64
Alignment explanation
Indices: 89001307--89001432 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 64
89001297 ATTCAAGACG
* *
89001307 CATCTAGTTAGGAGCATTAGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCATTA
1 CATCTAGCTAGGAGCATTAGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATTA
* * * * *
89001371 CATCTAGCTAGGAGCATTTGATTCATTTCAATTATCGTATCCTAATTATTTGGCATAAGCAT
1 CATCTAGCTAGGAGCATTAGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCAT
89001433 AGATACATGA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (64 bp):
CATCTAGCTAGGAGCATTAGATTCATTTCAATCATAGCATCCTAATTATTTGACATAAGCATTA
Found at i:89001640 original size:88 final size:88
Alignment explanation
Indices: 89001485--89001879 Score: 535
Period size: 88 Copynumber: 4.5 Consensus size: 88
89001475 TGAATTTACT
* *
89001485 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCTCCTTAAGTC-G
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAG-CAG
* * *
89001549 TAGCGGAGCAGATCGAACACTGTG
65 TAGCGGAGCAGATCAAAGACTATG
* *
89001573 AGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAAATTACAGATCTTGTCTTCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
*
89001638 AGCGGAGCAGATAAAAGACTATG
66 AGCGGAGCAGATCAAAGACTATG
* * *
89001661 AGCCTTAACCCTCTAAGCAGTAAGGTAACAGGCTATAAATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
* *
89001726 AGCGGAGAAGATCAAAGACAATG
66 AGCGGAGCAGATCAAAGACTATG
** * * * *
89001749 AGCCTTAA-CCCCTAAAAAGTAAGGAAACAGGCTAAAAATTACAGATCTTATCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
* * *
89001813 AGTGGAGCAGATCGAAGA-TGATA
66 AGCGGAGCAGATCAAAGACT-ATG
**
89001836 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATTACA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACA
89001880 ATTCGTATCT
Statistics
Matches: 270, Mismatches: 34, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
87 75 0.28
88 195 0.72
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTGTCTCCCTAAGCAGT
AGCGGAGCAGATCAAAGACTATG
Found at i:89001721 original size:44 final size:44
Alignment explanation
Indices: 89001583--89001726 Score: 109
Period size: 44 Copynumber: 3.3 Consensus size: 44
89001573 AGCCTTAACC
* * *
89001583 CCCTAAGCAGTAGGGTAATAGGCTAAAAATTACAGATCTTGTCT
1 CCCTAAGCAGTAAGGTAACAGGCTATAAATTACAGATCTTGTCT
* * * ** * **
89001627 TCCTAAGCAGT-AGCGGAGCA-G--ATAAAAGACTATGAGCCTTAAC-
1 CCCTAAGCAGTAAG-GTAACAGGCTATAAATTAC-A-GA-TCTTGTCT
89001670 CCTCTAAGCAGTAAGGTAACAGGCTATAAATTACAGATCTTGTCT
1 CC-CTAAGCAGTAAGGTAACAGGCTATAAATTACAGATCTTGTCT
89001715 CCCTAAGCAGTA
1 CCCTAAGCAGTA
89001727 GCGGAGAAGA
Statistics
Matches: 71, Mismatches: 19, Indels: 20
0.65 0.17 0.18
Matches are distributed among these distances:
41 6 0.08
42 1 0.01
43 5 0.07
44 44 0.62
45 7 0.10
46 1 0.01
47 7 0.10
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (44 bp):
CCCTAAGCAGTAAGGTAACAGGCTATAAATTACAGATCTTGTCT
Found at i:89001865 original size:175 final size:175
Alignment explanation
Indices: 89001485--89001879 Score: 535
Period size: 175 Copynumber: 2.2 Consensus size: 175
89001475 TGAATTTACT
*
89001485 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAGATCTTGTCTCCTTAAGTCGT
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTACAGATCTTGTCTCCCTAAGTCGT
* * ** ** * * *
89001550 AGCGGAGCAGATCGAACACTGTGAGCCTTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAAATTA
65 AGCGGAGAAGATCAAACACAATGAGCCTTAACCCCCTAAAAAGTAAGGAAACAGGCTAAAAATTA
* * *
89001615 CAGATCTTGTCTTCCTAAGCAGTAGCGGAGCAGATAAAAGACTATG
130 CAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATAAAAGACTATA
* *
89001661 AGCCTTAACCCTCTAAGCAGTAAGGTAACAGGCTATAAATTACAGATCTTGTCTCCCTAAG-CAG
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTA-AAATTACAGATCTTGTCTCCCTAAGTC-G
*
89001725 TAGCGGAGAAGATCAAAGACAATGAGCCTTAA-CCCCTAAAAAGTAAGGAAACAGGCTAAAAATT
64 TAGCGGAGAAGATCAAACACAATGAGCCTTAACCCCCTAAAAAGTAAGGAAACAGGCTAAAAATT
* * **
89001789 ACAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGA-TGATA
129 ACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATAAAAGACT-ATA
*
89001836 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAATTACA
1 AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTACA
89001880 ATTCGTATCT
Statistics
Matches: 192, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
174 1 0.01
175 107 0.56
176 84 0.44
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (175 bp):
AGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTGTCTCCCTAAGTCGTA
GCGGAGAAGATCAAACACAATGAGCCTTAACCCCCTAAAAAGTAAGGAAACAGGCTAAAAATTAC
AGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATAAAAGACTATA
Found at i:89001961 original size:44 final size:44
Alignment explanation
Indices: 89001913--89002471 Score: 229
Period size: 44 Copynumber: 12.7 Consensus size: 44
89001903 GCGGAGTAGA
*
89001913 TCGAAGCTACAAATCTCTTCTCCCTGAAATGGCACTAGAGCA-AC
1 TCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTAGAG-AGAC
* * ** * *
89001957 TCGAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCGGCGA-AGTAGA-
1 TCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGC-ACTAGAG-AGAC
* *
89002001 TCGGAGCTACAAATCTCTTCTCCTTGAAATGGCACTAGAGAGGC
1 TCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTAGAGAGAC
* * * ** *
89002045 TCAAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCAGT-G-GAGTAC
1 TCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGCACTAGAGAG-AC
* * * *
89002088 ATCAAAGCTATAAATCTCTTCTCCCTGAAATGGCACTAGAGAGGC
1 -TCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTAGAGAGAC
* * * ** *
89002133 TCGAAGCCAC-AAT-TAGTATCTCCTTGAAGTTCCAGC-GGAGTAGA-
1 TCGAAGCTACAAATCT-CT-TCTCCTTGAAATGGCA-CTAGAG-AGAC
* *
89002177 TTGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTAGAGAGGC
1 TCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTAGAGAGAC
* * ** *
89002221 TCGAAGCCAC-AAT-TCGTATCTCCTTGAAGTTCCAGCGA-AGTAGA-
1 TCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGCA-CTAGAG-AGAC
* ** *
89002265 TCGAAGCTACAAATCTCTTCTTCC-TGAAATGACACCGGAGAGGC
1 TCGAAGCTACAAATCTCTTC-TCCTTGAAATGGCACTAGAGAGAC
* ** *
89002309 TCGAAGCCAC-AAT-TCGTATCTCCTT-AAAGTTCCAGC-AGAGTA-AA
1 TCGAAGCTACAAATCTC-T-TCTCCTTGAAA-TGGCA-CTAGAG-AGAC
* * *
89002353 TCGAAGCTACAAATCTCTTCTTCC-TGAAATGACACTGGAGAGGC
1 TCGAAGCTACAAATCTCTTC-TCCTTGAAATGGCACTAGAGAGAC
* * * **
89002397 TTGAAGCCAC-AAT-TCGTATCTCCTTGAATTTCCAGC-AGAGTAGA-
1 TCGAAGCTACAAATCTC-T-TCTCCTTGAAATGGCA-CTAGAG-AGAC
*
89002441 TCGAAGCTACAAATCTCTTCTCCCTGAAATG
1 TCGAAGCTACAAATCTCTTCTCCTTGAAATG
89002472 ACATTGGAAC
Statistics
Matches: 375, Mismatches: 88, Indels: 104
0.66 0.16 0.18
Matches are distributed among these distances:
42 14 0.04
43 47 0.13
44 250 0.67
45 50 0.13
46 14 0.04
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (44 bp):
TCGAAGCTACAAATCTCTTCTCCTTGAAATGGCACTAGAGAGAC
Found at i:89002474 original size:88 final size:88
Alignment explanation
Indices: 89001877--89002471 Score: 922
Period size: 88 Copynumber: 6.8 Consensus size: 88
89001867 GCTGGAAATT
*
89001877 ACAATTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
89001942 TGGCACTAGAGCA-ACTCGAAGCC
66 TGGCACTAGAG-AGGCTCGAAGCC
* * * *
89001965 ACAATTCGTATCTCCTTGAAGTTCCGGCGAAGTAGATCGGAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
89002030 TGGCACTAGAGAGGCTCAAAGCC
66 TGGCACTAGAGAGGCTCGAAGCC
* * * *
89002053 ACAATTCGTATCTCCTTGAAGTTCCAGTGGAGTACATCAAAGCTATAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
89002118 TGGCACTAGAGAGGCTCGAAGCC
66 TGGCACTAGAGAGGCTCGAAGCC
* * *
89002141 ACAATTAGTATCTCCTTGAAGTTCCAGCGGAGTAGATTGAAGCTACAAATCTCTTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
89002206 TGGCACTAGAGAGGCTCGAAGCC
66 TGGCACTAGAGAGGCTCGAAGCC
* *
89002229 ACAATTCGTATCTCCTTGAAGTTCCAGCGAAGTAGATCGAAGCTACAAATCTCTTCTTCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* **
89002294 TGACACCGGAGAGGCTCGAAGCC
66 TGGCACTAGAGAGGCTCGAAGCC
* * * *
89002317 ACAATTCGTATCTCCTTAAAGTTCCAGCAGAGTAAATCGAAGCTACAAATCTCTTCTTCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* * *
89002382 TGACACTGGAGAGGCTTGAAGCC
66 TGGCACTAGAGAGGCTCGAAGCC
* *
89002405 ACAATTCGTATCTCCTTGAATTTCCAGCAGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
89002470 TG
66 TG
89002472 ACATTGGAAC
Statistics
Matches: 465, Mismatches: 41, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
87 1 0.00
88 464 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCACTAGAGAGGCTCGAAGCC
Found at i:89003419 original size:23 final size:23
Alignment explanation
Indices: 89003376--89003422 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
89003366 TGAAAGGAGC
* *
89003376 AAAATTTGTTTTTTTCGTTTTTT
1 AAAATCTGTTTTATTCGTTTTTT
*
89003399 AAAATCTGTTTATATTCTTTTTTT
1 AAAATCTGTTT-TATTCGTTTTTT
89003423 TTCTTTCTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 10 0.50
24 10 0.50
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.66
Consensus pattern (23 bp):
AAAATCTGTTTTATTCGTTTTTT
Found at i:89003428 original size:10 final size:10
Alignment explanation
Indices: 89003419--89003448 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
89003409 TATATTCTTT
89003419 TTTTTTCTTTC
1 TTTTTT-TTTC
89003430 TTTTTTTTTC
1 TTTTTTTTTC
89003440 TTTTTTTTT
1 TTTTTTTTT
89003449 AAAAAAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 13 0.68
11 6 0.32
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:89003432 original size:14 final size:14
Alignment explanation
Indices: 89003413--89003448 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
89003403 TCTGTTTATA
89003413 TTCTTTTTTTTTCT
1 TTCTTTTTTTTTCT
89003427 TTCTTTTTTTTTCT
1 TTCTTTTTTTTTCT
89003441 TT-TTTTTT
1 TTCTTTTTT
89003449 AAAAAAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 6 0.27
14 16 0.73
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (14 bp):
TTCTTTTTTTTTCT
Found at i:89004157 original size:3 final size:3
Alignment explanation
Indices: 89004149--89004388 Score: 122
Period size: 3 Copynumber: 81.3 Consensus size: 3
89004139 GTACTGCTTC
*
89004149 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TCA- TACA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TA-T TAT
* ** *
89004195 ATAT TAT TAT T-T ATAT TAT TAC TAT CCT T-T TCAT TCT TAT T-T TAT
1 -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT
* * * * * *
89004240 TAA TAT TAT TAT TAT TA- TCT TAT T-T TAT AAC TAT TAT CAT T-T TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * *
89004285 TAA AAT TAT TGT TAC TAT TAT TCT T-T TAC CAT T-T AAT ACAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
* * * * * *
89004329 TAT TAC TAT TTT TGT TAT TAT TAT TAT TAC TAT T-G TAT TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
89004376 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
89004389 TTTTGTATTT
Statistics
Matches: 175, Mismatches: 46, Indels: 32
0.69 0.18 0.13
Matches are distributed among these distances:
2 15 0.09
3 149 0.85
4 11 0.06
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:89004294 original size:20 final size:19
Alignment explanation
Indices: 89004250--89004294 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
89004240 TAATATTATT
*
89004250 ATTATTATCTTATTTTATA
1 ATTATTATCTTATTTTAAA
* *
89004269 ACTATTATCATTTTTTTAAA
1 ATTATTATC-TTATTTTAAA
89004289 ATTATT
1 ATTATT
89004295 GTTACTATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (19 bp):
ATTATTATCTTATTTTAAA
Found at i:89004561 original size:3 final size:3
Alignment explanation
Indices: 89004540--89004798 Score: 202
Period size: 3 Copynumber: 85.7 Consensus size: 3
89004530 TCAACTTTAG
* * **
89004540 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ATT ACT ATTT ATT ATT ACC
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT
* * * * *
89004587 ATT ACT ATT ACT ATT ACT ATT ACT ATT ACTT -TT ACTT -TT ATT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT A-TT ATT ATT ATT
* * * * * *
89004632 ATC ACT A-T ATT ATT ATT ATT ATT ATT TTCT ATT ACT ATT ATC ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT
* * * * * **
89004677 ATT ATT ATT ACT AAT ATT AAT ATT CTT ATT ATT ACT ATT ATT ATT AAC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * *
89004725 ATT AGT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT ACT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
89004773 ATT AAT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
89004799 CGTTCTCATT
Statistics
Matches: 198, Mismatches: 48, Indels: 20
0.74 0.18 0.08
Matches are distributed among these distances:
2 7 0.04
3 179 0.90
4 12 0.06
ACGTcount: A:0.32, C:0.08, G:0.01, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:89008775 original size:14 final size:13
Alignment explanation
Indices: 89008732--89008788 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
89008722 CCCATTACAT
89008732 CAAAACCCAATA-
1 CAAAACCCAATAC
*
89008744 CAAAGACCCACAAAC
1 CAAA-ACCCA-ATAC
89008759 CAAAACCCAATATC
1 CAAAACCCAATA-C
*
89008773 CAATACCCAAATAC
1 CAAAACCC-AATAC
89008787 CA
1 CA
89008789 GGTCAGCCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
12 4 0.11
13 7 0.19
14 18 0.49
15 8 0.22
ACGTcount: A:0.53, C:0.37, G:0.02, T:0.09
Consensus pattern (13 bp):
CAAAACCCAATAC
Found at i:89009276 original size:26 final size:24
Alignment explanation
Indices: 89009245--89009294 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
89009235 AAATAAAAAA
*
89009245 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
89009271 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
89009295 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:89009314 original size:21 final size:21
Alignment explanation
Indices: 89009265--89009323 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
89009255 ATAATAAATC
*
89009265 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
89009285 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
89009307 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
89009324 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:89010409 original size:3 final size:3
Alignment explanation
Indices: 89010401--89010453 Score: 54
Period size: 3 Copynumber: 17.7 Consensus size: 3
89010391 CTTTATTAAA
* * * *
89010401 TAT TAT TAT TAT T-T GTAA TAT TAT TAA TAT TAT TAC TAT CAT TAT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
89010446 TAT TAT TA
1 TAT TAT TA
89010454 ACATTAATGT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
2 1 0.03
3 39 0.98
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:89010422 original size:9 final size:9
Alignment explanation
Indices: 89010393--89010459 Score: 64
Period size: 9 Copynumber: 7.3 Consensus size: 9
89010383 TTTCGTTTCT
89010393 TTATTAAATA
1 TTATT-AATA
*
89010403 TTATTATTA
1 TTATTAATA
89010412 TT-TGTAATA
1 TTAT-TAATA
89010421 TTATTAATA
1 TTATTAATA
*
89010430 TTATTACTA
1 TTATTAATA
* *
89010439 TCATTATTA
1 TTATTAATA
*
89010448 TTATTAACA
1 TTATTAATA
89010457 TTA
1 TTA
89010460 ATGTATATTT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
8 1 0.02
9 40 0.85
10 6 0.13
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.55
Consensus pattern (9 bp):
TTATTAATA
Found at i:89010422 original size:18 final size:18
Alignment explanation
Indices: 89010393--89010459 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
89010383 TTTCGTTTCT
89010393 TTATTAAATATTATTATTA
1 TTATT-AATATTATTATTA
*
89010412 TT-TGTAATATTATTAATA
1 TTAT-TAATATTATTATTA
* *
89010430 TTATTACTATCATTATTA
1 TTATTAATATTATTATTA
*
89010448 TTATTAACATTA
1 TTATTAATATTA
89010460 ATGTATATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
18 35 0.90
19 4 0.10
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.55
Consensus pattern (18 bp):
TTATTAATATTATTATTA
Found at i:89012933 original size:20 final size:19
Alignment explanation
Indices: 89012888--89012940 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 19
89012878 ATATTTGTTA
* *
89012888 AATAAAAATAAA-AATAGT
1 AATAAAATTAAATAATAAT
*
89012906 AATTAAATTAAATAATATAT
1 AATAAAATTAAATAATA-AT
*
89012926 AATAAAATAAAATAA
1 AATAAAATTAAATAA
89012941 ATTTATTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 10 0.36
19 4 0.14
20 14 0.50
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
AATAAAATTAAATAATAAT
Found at i:89013257 original size:10 final size:9
Alignment explanation
Indices: 89013194--89013274 Score: 55
Period size: 10 Copynumber: 8.9 Consensus size: 9
89013184 AATTTTAAAA
89013194 AATATTTTT
1 AATATTTTT
89013203 -ATACTTTTT
1 AATA-TTTTT
89013212 AATCA-TTTT
1 AAT-ATTTTT
*
89013221 AATGATTTGT
1 AAT-ATTTTT
*
89013231 AAT-TTTTAAA
1 AATATTTT--T
89013241 AATATTTTT
1 AATATTTTT
89013250 ATATATTTTT
1 A-ATATTTTT
89013260 AA-ATTTTT
1 AATATTTTT
89013268 AA-ATTTT
1 AATATTTT
89013275 AAAAATCAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
8 19 0.32
9 15 0.25
10 20 0.34
11 5 0.08
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (9 bp):
AATATTTTT
Found at i:89018029 original size:7 final size:7
Alignment explanation
Indices: 89018017--89018041 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
89018007 CGTAACACTT
89018017 AAAAATA
1 AAAAATA
89018024 AAAAATA
1 AAAAATA
89018031 AAAAATA
1 AAAAATA
89018038 AAAA
1 AAAA
89018042 CTCACTTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAATA
Found at i:89024535 original size:15 final size:15
Alignment explanation
Indices: 89024517--89024552 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
89024507 TGATGAAAGG
*
89024517 GAAGAACAAGAACAA
1 GAAGAACAACAACAA
*
89024532 GAAGAACAACAAGAA
1 GAAGAACAACAACAA
89024547 GAAGAA
1 GAAGAA
89024553 GATGATGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.67, C:0.11, G:0.22, T:0.00
Consensus pattern (15 bp):
GAAGAACAACAACAA
Found at i:89024559 original size:3 final size:3
Alignment explanation
Indices: 89024553--89024590 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
89024543 AGAAGAAGAA
89024553 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
89024591 GAATGGAGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:89026895 original size:23 final size:22
Alignment explanation
Indices: 89026852--89026901 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 22
89026842 CAAATAAAAA
89026852 AATTATTTATTTTAATATTTAT
1 AATTATTTATTTTAATATTTAT
89026874 AATTATTT-TTTTACAATATTTAT
1 AATTATTTATTTT--AATATTTAT
89026897 AATTA
1 AATTA
89026902 AATCTAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.15
22 8 0.31
23 14 0.54
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
AATTATTTATTTTAATATTTAT
Found at i:89028744 original size:40 final size:40
Alignment explanation
Indices: 89028699--89028782 Score: 100
Period size: 39 Copynumber: 2.1 Consensus size: 40
89028689 GAATTTTTAT
* *
89028699 ATTTAAAAAATAAATTTTGATTTTTT-ATAAA-TATTTTGA
1 ATTTTAAAAATAAATTTTAATTTTTTGA-AAATTATTTTGA
* *
89028738 ATTTTAAAAATTATTTTTAATTTTTTGAAAATTATTTTGA
1 ATTTTAAAAATAAATTTTAATTTTTTGAAAATTATTTTGA
*
89028778 TTTTT
1 ATTTT
89028783 TTTTATAATT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
39 25 0.66
40 13 0.34
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (40 bp):
ATTTTAAAAATAAATTTTAATTTTTTGAAAATTATTTTGA
Found at i:89028748 original size:18 final size:19
Alignment explanation
Indices: 89028721--89028781 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 19
89028711 AATTTTGATT
*
89028721 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
*
89028739 TTTTAAAAATTATTTTTAA
1 TTTTAAAAATTATTTTGAA
*
89028758 TTTTTTGAAAATTATTTTG-A
1 --TTTTAAAAATTATTTTGAA
89028778 TTTT
1 TTTT
89028782 TTTTTATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 12 0.33
19 8 0.22
20 1 0.03
21 15 0.42
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:89028784 original size:21 final size:19
Alignment explanation
Indices: 89028712--89028783 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
89028702 TAAAAAATAA
89028712 ATTTTGATTTTTTATAAA-T
1 ATTTTGATTTTTTA-AAATT
* *
89028731 ATTTTGAATTTTAAAAATT
1 ATTTTGATTTTTTAAAATT
*
89028750 ATTTTTAATTTTTTGAAAATT
1 A-TTTTGATTTTTT-AAAATT
89028771 ATTTTGATTTTTT
1 ATTTTGATTTTTT
89028784 TTTATAATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.07
19 14 0.32
20 20 0.45
21 7 0.16
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (19 bp):
ATTTTGATTTTTTAAAATT
Found at i:89034206 original size:18 final size:20
Alignment explanation
Indices: 89034171--89034207 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
89034161 TATTATTTTC
*
89034171 TATTATAAAATGTTAGTTTA
1 TATTATAAAATGTAAGTTTA
89034191 TATTA-AAAAT-TAAGTTT
1 TATTATAAAATGTAAGTTT
89034208 TAAGGAGGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 5 0.31
20 5 0.31
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (20 bp):
TATTATAAAATGTAAGTTTA
Found at i:89035811 original size:30 final size:30
Alignment explanation
Indices: 89035758--89035839 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 30
89035748 ACTAAACTTG
*
89035758 AATTTTAAAATTTA-AAAAATAGAA-AGCTT-
1 AATTTT-AAATTTATAAAAATAGAATA-ATTA
89035787 AATTTTAAATTTATAAAAAGTAGAATAATTA
1 AATTTTAAATTTATAAAAA-TAGAATAATTA
*
89035818 AATTCTAAATTTATAAAGAATA
1 AATTTTAAATTTATAAA-AATA
89035840 TAAAGACCTA
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
28 7 0.15
29 11 0.24
30 7 0.15
31 19 0.41
32 2 0.04
ACGTcount: A:0.55, C:0.02, G:0.06, T:0.37
Consensus pattern (30 bp):
AATTTTAAATTTATAAAAATAGAATAATTA
Found at i:89045535 original size:177 final size:177
Alignment explanation
Indices: 89045308--89045955 Score: 966
Period size: 177 Copynumber: 3.7 Consensus size: 177
89045298 GCCACAAGTC
* *
89045308 TTAACCCCCTAAGCAGTAGGGTGACAGGCTGAAAATTACAGATCTTATCTCCATGTATCGGCTAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* *
89045373 GGAGCAGATC-AAAGATGGTGAGTCTTATCTCCATGTATTGGCTATGGAGCAGATTTTAGCCACC
66 GGAGCAGATCGAAA-ATGGCGAGTCTTATCTCCATGTATTGACTATGGAGCAGATTTTAGCCACC
* * * *
89045437 GACCTTATCTCTCTAAGGTAGCAAGAGAGCAGGTTGAAGATACGAG-T
130 GGCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
* * * * *
89045484 CTTAACCCCCTAAGCAGTAGGGTAACAAGC-AGAAAATAAAAGATATTATCTCCATGTATCGACT
1 -TTAACCCCCTAAGCAGTAGGGTAACAGGCTA-AAAATTACAGATCTTATCTCCATGTATCGGCT
**
89045548 ATGGAGCAGATCGAAAATGGCGAGTCTTATCTTTATGTATTGACTATGGAGCAGATTTTAGCCAC
64 ATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATTGACTATGGAGCAGATTTTAGCCAC
*
89045613 CGGCCTTATTTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
129 CGGCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
* *
89045662 TTAACCCCCTAAGCAGTAGGGTAATAGGCTAAAAATTGCAGATCTTATCTCCATGTATCGGCTAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
**
89045727 GGAGCAGATCGAAAATGGCGAGTCTTATCTTTATGTATTGACTATGGAGCAGATTTTAGCCACCG
66 GGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATTGACTATGGAGCAGATTTTAGCCACCG
*
89045792 GCTTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
131 GCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
* *
89045839 TTAACCCCCTAAGCAATAGGGTAATAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
1 TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
* * * * *
89045904 GGAGTAGATC--AAATTGC-AGATCTTATCTCCATGTATCGGCTATGGAGTAGAT
66 GGAGCAGATCGAAAATGGCGAG-TCTTATCTCCATGTATTGACTATGGAGCAGAT
89045956 CGAAGATGGC
Statistics
Matches: 432, Mismatches: 34, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
174 2 0.00
175 33 0.08
177 392 0.91
178 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (177 bp):
TTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAATTACAGATCTTATCTCCATGTATCGGCTAT
GGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATTGACTATGGAGCAGATTTTAGCCACCG
GCCTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATACGAGCT
Found at i:89045932 original size:43 final size:44
Alignment explanation
Indices: 89045871--89046000 Score: 201
Period size: 43 Copynumber: 3.0 Consensus size: 44
89045861 AATAGGCTAA
*
89045871 AAATTACAGATCTTATCTCCATGTATCGGCTATGGAGTAGATC-
1 AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCG
89045914 AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCG
1 AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCG
* *
89045958 AAGATGGC-GAATCTTATCTCCATGTATCGGCTATGGAGCAGAT
1 AA-ATTGCAG-ATCTTATCTCCATGTATCGGCTATGGAGTAGAT
89046001 TTTAGCCATC
Statistics
Matches: 81, Mismatches: 3, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
43 42 0.52
44 3 0.04
45 36 0.44
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (44 bp):
AAATTGCAGATCTTATCTCCATGTATCGGCTATGGAGTAGATCG
Found at i:89045987 original size:45 final size:45
Alignment explanation
Indices: 89045880--89046222 Score: 227
Period size: 45 Copynumber: 7.7 Consensus size: 45
89045870 AAAATTACAG
* *
89045880 ATCTTATCTCCATGTATCGGCTATGGAGTAGATC-AA-ATTGC-A
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGA
*
89045922 GATCTTATCTCCATGTATCGGCTATGGAGTAGATCGAAGATGGCGA
1 -ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGA
*** * **
89045968 ATCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCAGCCTT
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAG--AT--GGCGA
* * * * * * *
89046017 ATCTT-TCT-GAGGTA---GC-AAGAGAGCAGGTTGAAGGT-AC-A
1 ATCTTATCTCCATGTATCGGCTATG-GAGCAGATCGAAGATGGCGA
* * * *
89046055 ATTCTTATCTTCC-TG-AGGT-AGC-AAGGAAGCAGACTC-AA-ATTG-TA
1 A-TCTTATC-TCCATGTA--TCGGCTATGG-AGCAGA-TCGAAGATGGCGA
* *
89046099 GATCTTATCTCCATGTATCGGCTATGGAGTAGATCGAAAATGGCGA
1 -ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGA
*
89046145 ATCTTATCTCCAGGTATCGGCTATGGAGCAGATCGAAGATGGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGA
*
89046190 ATCATATCTCCATGTATCGGCTATGGAGCAGAT
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGAT
89046223 TTTAGCCATC
Statistics
Matches: 239, Mismatches: 33, Indels: 54
0.73 0.10 0.17
Matches are distributed among these distances:
38 1 0.00
39 5 0.02
40 3 0.01
41 2 0.01
42 1 0.00
43 44 0.18
44 45 0.19
45 120 0.50
46 2 0.01
47 6 0.03
48 3 0.01
49 7 0.03
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (45 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGA
Found at i:89046226 original size:222 final size:221
Alignment explanation
Indices: 89045703--89046674 Score: 1351
Period size: 222 Copynumber: 4.4 Consensus size: 221
89045693 AAAATTGCAG
* * ** * *
89045703 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTTTATGTATTGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
* * * * * *
89045768 CTATGGAGCAGATTTTAGCCACCGGCTTTATCTCTTTGATGTAGCAAGAGAGCAGGTTGAAGATA
66 CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
* * ** * * ** * * * *
89045833 CGAG-CTTTAACCCCCT-AAGCAATAGGGTAA-TAGGCTAAAAATTACAGATCTTATCTCCATGT
131 CAAGTC-TTATCTTCCTGAGGTAGCAAGG-AAGCAGACT-GAAATTACAGATCTTATCTCCATGT
*
89045895 ATCGGCTATGGAGTAGATC-AAATTGC-A
193 ATCGGCTATGGAGTAGATCAAAATGGCGA
*
89045922 GATCTTATCTCCATGTATCGGCTATGGAGTAGATCGAAGATGGCGAATCTTATCTCCATGTATCG
1 -ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCG
*
89045987 GCTATGGAGCAGATTTTAGCCATCAGCCTTATCTTTCTGAGGTAGCAAGAGAGCAGGTTGAAGGT
65 GCTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGGT
* * **
89046052 ACAATTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTCAAATTGTAGATCTTATCTCCATGTAT
130 ACAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTACAGATCTTATCTCCATGTAT
89046117 CGGCTATGGAGTAGATCGAAAATGGCGA
195 CGGCTATGGAGTAGATC-AAAATGGCGA
* *
89046145 ATCTTATCTCCAGGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCATATCTCCATGTATCGG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
* *
89046210 CTATGGAGCAGATTTTAGCCATCAGCTTTCTCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
66 CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
* * *
89046275 CAAGTCTTATCTTCTTGAGGTAGCAAGAAAGCAGACTGAAATTACAGATCTTATCTCTATGTATC
131 CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTACAGATCTTATCTCCATGTATC
* *
89046340 GACTATGGAGTAGATCAAAGATGGTGA
196 GGCTATGGAGTAGATCAAA-ATGGCGA
* * * **
89046367 ATCTTATCTCCATGTATCGGTTATGGAGCAGATCGAAAATGGCGAATCATATCTGAATGTATCGG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
* *
89046432 CTCTGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTATCAAGAGAGCAGGTTGAAGGTA
66 CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
* *
89046497 CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTGCAGATCTTATCTCCCTGTATC
131 CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTACAGATCTTATCTCCATGTATC
* *
89046562 GGCTATGTAGTAGATCGAAGATGGCGA
196 GGCTATGGAGTAGATC-AAAATGGCGA
* * * *
89046589 ATCTTATCTCCAAGTATCGGCTATGGAGCAGATCGAAGATAGCGAGTCTTATCTCTATGTATCGG
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
89046654 CTATGGAGCAGATTTTAGCCA
66 CTATGGAGCAGATTTTAGCCA
89046675 CCGGCCTTGT
Statistics
Matches: 672, Mismatches: 72, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
220 168 0.25
221 14 0.02
222 487 0.72
223 3 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (221 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGG
CTATGGAGCAGATTTTAGCCATCAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGGTA
CAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAATTACAGATCTTATCTCCATGTATC
GGCTATGGAGTAGATCAAAATGGCGA
Found at i:89046327 original size:44 final size:44
Alignment explanation
Indices: 89046246--89046330 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
89046236 TTTCTCTCTC
* ** *
89046246 TGAGGTAGCAAGAGAGCAGGTTGAAGGTACAAGTCTTATCTTCT
1 TGAGGTAGCAAGAAAGCAGACTGAAAGTACAAGTCTTATCTTCT
*
89046290 TGAGGTAGCAAGAAAGCAGACTGAAATTAC-AGATCTTATCT
1 TGAGGTAGCAAGAAAGCAGACTGAAAGTACAAG-TCTTATCT
89046331 CTATGTATCG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 2 0.06
44 33 0.94
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.26
Consensus pattern (44 bp):
TGAGGTAGCAAGAAAGCAGACTGAAAGTACAAGTCTTATCTTCT
Found at i:89046392 original size:45 final size:45
Alignment explanation
Indices: 89046322--89046444 Score: 149
Period size: 45 Copynumber: 2.7 Consensus size: 45
89046312 GAAATTACAG
* * * *
89046322 ATCTTATCTCTATGTATCGACTATGGAGTAGATC-AAAGATGGTGA
1 ATCTTATCTCAATGTATCGGCTATGGAGCAGATCGAAA-ATGGCGA
* *
89046367 ATCTTATCTCCATGTATCGGTTATGGAGCAGATCGAAAATGGCGA
1 ATCTTATCTCAATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
* * *
89046412 ATCATATCTGAATGTATCGGCTCTGGAGCAGAT
1 ATCTTATCTCAATGTATCGGCTATGGAGCAGAT
89046445 TTTAGCCATC
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
45 64 0.96
46 3 0.04
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (45 bp):
ATCTTATCTCAATGTATCGGCTATGGAGCAGATCGAAAATGGCGA
Found at i:89046608 original size:45 final size:45
Alignment explanation
Indices: 89046544--89046666 Score: 183
Period size: 45 Copynumber: 2.7 Consensus size: 45
89046534 GAAATTGCAG
* * * *
89046544 ATCTTATCTCCCTGTATCGGCTATGTAGTAGATCGAAGATGGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATAGCGA
*
89046589 ATCTTATCTCCAAGTATCGGCTATGGAGCAGATCGAAGATAGCGA
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATAGCGA
* *
89046634 GTCTTATCTCTATGTATCGGCTATGGAGCAGAT
1 ATCTTATCTCCATGTATCGGCTATGGAGCAGAT
89046667 TTTAGCCACC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (45 bp):
ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAGATAGCGA
Found at i:89050381 original size:93 final size:93
Alignment explanation
Indices: 89050272--89050443 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
89050262 GCCCATAAGT
* * * *
89050272 GAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAG-TTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCA
89050336 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
*
89050365 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTTGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
89050430 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
89050444 CAAATATCCC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:89050434 original size:46 final size:46
Alignment explanation
Indices: 89050264--89050439 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
89050254 TGTAACCGGC
* * *
89050264 CCATAAGTGAACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGCTCGCAT
* * * *
89050310 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCGCAT
* *** *
89050356 ACATCTCTCGAACTCAGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
*
89050403 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
89050440 TGCCCAAATA
Statistics
Matches: 104, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
45 1 0.01
46 68 0.65
47 35 0.34
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:89057211 original size:20 final size:21
Alignment explanation
Indices: 89057184--89057227 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
89057174 TGTTAGGTTA
*
89057184 TTTTTAAA-ATTA-TTTTATT
1 TTTTTAAACATGATTTTTATT
89057203 TTTTATAAACATGATTTTTATT
1 TTTT-TAAACATGATTTTTATT
89057225 TTT
1 TTT
89057228 ATTTTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 4 0.19
21 3 0.14
22 10 0.48
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (21 bp):
TTTTTAAACATGATTTTTATT
Found at i:89064003 original size:30 final size:32
Alignment explanation
Indices: 89063969--89064047 Score: 78
Period size: 30 Copynumber: 2.6 Consensus size: 32
89063959 AGTGAAAGTG
*
89063969 AAAAATAATAAATAATAATAA-TTTAGTATA-
1 AAAAATAATAAATAATAATAACTATAGTATAT
* ** *
89063999 AAAAATATTCGATAA-AA-AACTATGGTATAT
1 AAAAATAATAAATAATAATAACTATAGTATAT
89064029 AAAAATAATAAA-AATAATA
1 AAAAATAATAAATAATAATA
89064048 TAGTAGGTCT
Statistics
Matches: 37, Mismatches: 8, Indels: 7
0.71 0.15 0.13
Matches are distributed among these distances:
28 2 0.05
29 11 0.30
30 23 0.62
31 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (32 bp):
AAAAATAATAAATAATAATAACTATAGTATAT
Found at i:89064108 original size:16 final size:16
Alignment explanation
Indices: 89064087--89064133 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
89064077 AACTTTAGCG
*
89064087 AAAAATATATACAT-AT
1 AAAAAT-TATAAATAAT
89064103 AAAAATTATAAATAAT
1 AAAAATTATAAATAAT
89064119 -AAAATTA-AAATAAT
1 AAAAATTATAAATAAT
89064133 A
1 A
89064134 GTAGTAAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 7 0.25
15 13 0.46
16 8 0.29
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAAATTATAAATAAT
Found at i:89064131 original size:14 final size:15
Alignment explanation
Indices: 89064104--89064133 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
89064094 TATACATATA
89064104 AAAATTATAAATAAT
1 AAAATTATAAATAAT
89064119 AAAATTA-AAATAAT
1 AAAATTATAAATAAT
89064133 A
1 A
89064134 GTAGTAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATTATAAATAAT
Found at i:89064557 original size:22 final size:23
Alignment explanation
Indices: 89064529--89064576 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
89064519 CGCTAAAATG
89064529 ATAGTAAAAATAAATAAATAA-A
1 ATAGTAAAAATAAATAAATAATA
* * *
89064551 ATAGTAATAATAGATTAATAATA
1 ATAGTAAAAATAAATAAATAATA
89064574 ATA
1 ATA
89064577 ATACCAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 18 0.82
23 4 0.18
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (23 bp):
ATAGTAAAAATAAATAAATAATA
Found at i:89065913 original size:46 final size:46
Alignment explanation
Indices: 89065849--89065945 Score: 113
Period size: 46 Copynumber: 2.1 Consensus size: 46
89065839 AGTGGGGCGG
* * * *
89065849 GATCTGCTGAAATCTGATCTGCTCCGCTCCTGTTCAGCGAAGATAA
1 GATCTACTGAAATCTGATCTGCTCCACTCCTGCTCAGCAAAGATAA
* * * * *
89065895 GATCTACTGTAATTTGATCTGCTTCACTCCTGCTCAGTAAAGATGA
1 GATCTACTGAAATCTGATCTGCTCCACTCCTGCTCAGCAAAGATAA
89065941 GATCT
1 GATCT
89065946 GGTATGTTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.32
Consensus pattern (46 bp):
GATCTACTGAAATCTGATCTGCTCCACTCCTGCTCAGCAAAGATAA
Found at i:89066107 original size:135 final size:135
Alignment explanation
Indices: 89065905--89066262 Score: 488
Period size: 135 Copynumber: 2.7 Consensus size: 135
89065895 GATCTACTGT
* * ** *
89065905 AATTTGATCTGCTTCACTCCTGCTCAGTAAAGATGAGATCTGGTATGTTTAGCCTGTTTCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTACTCCACTCC
* * * *
89065970 TGCTCAGTGAAGATAAGGCTGGTGGCTGAAATCTGTTCCATTGCCGATACATGGAGATAAGACTC
66 TGCTCAGTGAAGATAAGGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGACTC
89066035 GCCAA
131 GCCAA
*
89066040 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCGGGTATGTTTAGCCTACTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTACTCCACTCC
* * * * * * *
89066105 TGCTCAGTGAAGATAAGGTTGATGATTGGAATCTGCTCCATCGCTGGTACGTGGAGATAAGATTC
66 TGCTCAGTGAAGATAAGGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGACTC
*
89066170 TCCAA
131 GCCAA
* * *
89066175 AATTCGATCTGCTTCACTCCTGCCCAGTGAAGATAAGATCTGGTA--TTTATCCTACTCCACTCC
1 AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTACTCCACTCC
*
89066238 TGC-CTAGTGAAGATAAGGCTAATGA
66 TGCTC-AGTGAAGATAAGGCTGATGA
89066263 TATCTGTAAT
Statistics
Matches: 198, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
132 1 0.01
133 38 0.19
135 159 0.80
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (135 bp):
AATTTGATCTGCTTCACTCCTGCTCAGTGAAGATAAGATCTGGTATGTTTAGCCTACTCCACTCC
TGCTCAGTGAAGATAAGGCTGATGACTGAAATCTGCTCCATCGCCGATACATGGAGATAAGACTC
GCCAA
Found at i:89078680 original size:32 final size:34
Alignment explanation
Indices: 89078643--89078706 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
89078633 ATGAAAATAA
* *
89078643 ATAAAAATAATA-AT-GAAAATGATATAATAAGT
1 ATAAAAATAATATATAAAAAATAATATAATAAGT
89078675 ATAAAAATAATATATAAAAAATAATATAATAA
1 ATAAAAATAATATATAAAAAATAATATAATAA
89078707 ATAATAGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 12 0.43
33 2 0.07
34 14 0.50
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (34 bp):
ATAAAAATAATATATAAAAAATAATATAATAAGT
Found at i:89078686 original size:15 final size:14
Alignment explanation
Indices: 89078638--89078712 Score: 61
Period size: 15 Copynumber: 5.3 Consensus size: 14
89078628 ATTAAATGAA
89078638 AATAA-ATAAAAAT
1 AATAATATAAAAAT
89078651 AATAATGA-AAATGATAT
1 AATAAT-ATAAA--A-AT
89078668 AATAAGTATAAAAAT
1 AATAA-TATAAAAAT
89078683 AAT-ATAT-AAAA-
1 AATAATATAAAAAT
89078694 AATAATATAATAAAT
1 AATAATATAA-AAAT
89078709 AATA
1 AATA
89078713 GGAAAATCGC
Statistics
Matches: 51, Mismatches: 0, Indels: 20
0.72 0.00 0.28
Matches are distributed among these distances:
11 3 0.06
12 8 0.16
13 9 0.18
14 7 0.14
15 10 0.20
16 2 0.04
17 8 0.16
18 4 0.08
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (14 bp):
AATAATATAAAAAT
Found at i:89078696 original size:14 final size:15
Alignment explanation
Indices: 89078677--89078712 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
89078667 TAATAAGTAT
89078677 AAAAATAATAT-ATA
1 AAAAATAATATAATA
89078691 AAAAATAATATAATA
1 AAAAATAATATAATA
*
89078706 AATAATA
1 AAAAATA
89078713 GGAAAATCGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 11 0.55
15 9 0.45
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
AAAAATAATATAATA
Found at i:89081042 original size:2 final size:2
Alignment explanation
Indices: 89081030--89081064 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
89081020 TAAAATTAAG
*
89081030 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
89081065 TCTATTCCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:89082824 original size:17 final size:17
Alignment explanation
Indices: 89082802--89082837 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
89082792 TCTTCTCCAA
89082802 TTCACATTTATATTTTT
1 TTCACATTTATATTTTT
89082819 TTCACATTTATATTTTT
1 TTCACATTTATATTTTT
89082836 TT
1 TT
89082838 TATGTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCACATTTATATTTTT
Found at i:89082979 original size:19 final size:20
Alignment explanation
Indices: 89082955--89082996 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
89082945 TATAAATAAA
*
89082955 ATAATAAATATGTA-ATTAT
1 ATAATAAAAATGTATATTAT
89082974 ATAATAAAAATGTATATTAT
1 ATAATAAAAATGTATATTAT
89082994 ATA
1 ATA
89082997 TATCATTATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (20 bp):
ATAATAAAAATGTATATTAT
Found at i:89084057 original size:2 final size:2
Alignment explanation
Indices: 89084044--89084079 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
89084034 TTATCAATTC
*
89084044 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
89084080 TATGAAACAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:89085945 original size:47 final size:47
Alignment explanation
Indices: 89085891--89085986 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
89085881 ATCCCGTAAG
89085891 TTAGGATGCGACGTTGGAATCCTCGAGAACAAGCTTGCCTTTAATTT
1 TTAGGATGCGACGTTGGAATCCTCGAGAACAAGCTTGCCTTTAATTT
*
89085938 TTAGGATGCGACGTTGGAATCCTCGAGAACAAGTTTGCCTTTAATTT
1 TTAGGATGCGACGTTGGAATCCTCGAGAACAAGCTTGCCTTTAATTT
89085985 TT
1 TT
89085987 TATCAAAAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (47 bp):
TTAGGATGCGACGTTGGAATCCTCGAGAACAAGCTTGCCTTTAATTT
Found at i:89086462 original size:25 final size:24
Alignment explanation
Indices: 89086434--89086490 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
89086424 ATAAAAAAGG
*
89086434 TTTAAAATAGATACTAAAAAAACAA
1 TTTAAAATAAATACT-AAAAAACAA
* * *
89086459 TTTAAAGTAAATAGTATAAAACAA
1 TTTAAAATAAATACTAAAAAACAA
89086483 TTTAAAAT
1 TTTAAAAT
89086491 CATTAATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
TTTAAAATAAATACTAAAAAACAA
Found at i:89086500 original size:24 final size:24
Alignment explanation
Indices: 89086405--89086501 Score: 68
Period size: 24 Copynumber: 3.9 Consensus size: 24
89086395 AATCAACGAT
* * *
89086405 AATTTTAAATGAATAATATATAAAA
1 AATTTAAAATAAATAATATA-AAAC
* * *
89086430 AAGGTTTAAAATAGATACTAAAAAAAC
1 AA--TTTAAAATAAATAAT-ATAAAAC
* *
89086457 AATTTAAAGTAAATAGTATAAAAC
1 AATTTAAAATAAATAATATAAAAC
* *
89086481 AATTTAAAATCATTAATATAA
1 AATTTAAAATAAATAATATAA
89086502 TATGTGAAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 7
0.72 0.18 0.09
Matches are distributed among these distances:
24 23 0.42
25 14 0.25
27 16 0.29
28 2 0.04
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (24 bp):
AATTTAAAATAAATAATATAAAAC
Found at i:89086554 original size:30 final size:31
Alignment explanation
Indices: 89086495--89086577 Score: 82
Period size: 30 Copynumber: 2.7 Consensus size: 31
89086485 TAAAATCATT
* * * *
89086495 AATATAATATGTGAAAAATAAAT-TTTAAAAT
1 AATATAATATAT-AAAAATATATGTATAAAAC
89086526 AA-ATAATATATAAAAATATATGTATAAAAC
1 AATATAATATATAAAAATATATGTATAAAAC
* *
89086556 AATTTAATATA-AATAATATATG
1 AATATAATATATAAAAATATATG
89086578 AAATCTTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
29 9 0.20
30 26 0.59
31 9 0.20
ACGTcount: A:0.59, C:0.01, G:0.05, T:0.35
Consensus pattern (31 bp):
AATATAATATATAAAAATATATGTATAAAAC
Found at i:89086622 original size:22 final size:23
Alignment explanation
Indices: 89086590--89086638 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
89086580 ATCTTAAAGT
89086590 AAAT-AATAATAAAAAGG-TTTA
1 AAATAAATAATAAAAAGGATTTA
*
89086611 CAATAAATAATAAAAAGGATTTA
1 AAATAAATAATAAAAAGGATTTA
89086634 AAATA
1 AAATA
89086639 GTTAACATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 13 0.54
23 8 0.33
ACGTcount: A:0.63, C:0.02, G:0.08, T:0.27
Consensus pattern (23 bp):
AAATAAATAATAAAAAGGATTTA
Found at i:89086782 original size:26 final size:26
Alignment explanation
Indices: 89086677--89086795 Score: 89
Period size: 26 Copynumber: 4.5 Consensus size: 26
89086667 AACATATAAG
*
89086677 AAATAAATAACATATATACGAAATGGTTTA
1 AAATAAATAATATATATA--AAA--GTTTA
*** *
89086707 AAATAAA-AAGGGATATAAAAATTTCA
1 AAATAAATAATATATATAAAAGTTT-A
* * *
89086733 AAATAAATAATATGTATGATAGTTTA
1 AAATAAATAATATATATAAAAGTTTA
*
89086759 GAATAAATAATATATATAAAAG-TTA
1 AAATAAATAATATATATAAAAGTTTA
*
89086784 AAATGAATAATA
1 AAATAAATAATA
89086796 GTTTAAAATA
Statistics
Matches: 70, Mismatches: 17, Indels: 9
0.73 0.18 0.09
Matches are distributed among these distances:
25 16 0.23
26 27 0.39
27 13 0.19
29 7 0.10
30 7 0.10
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30
Consensus pattern (26 bp):
AAATAAATAATATATATAAAAGTTTA
Found at i:89086810 original size:17 final size:16
Alignment explanation
Indices: 89086770--89086812 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
89086760 AATAAATAAT
*
89086770 ATATATAAAAGTTAAA
1 ATATATAATAGTTAAA
89086786 ATGA-ATAATAGTTTAAA
1 AT-ATATAATAG-TTAAA
89086803 ATATATAATA
1 ATATATAATA
89086813 TGTAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (16 bp):
ATATATAATAGTTAAA
Found at i:89086835 original size:42 final size:42
Alignment explanation
Indices: 89086751--89086890 Score: 109
Period size: 42 Copynumber: 3.1 Consensus size: 42
89086741 AATATGTATG
* * * *
89086751 ATAGTTTAGAATAAATAATATATATAAAAGTTAAAATGAATA
1 ATAGTTTAAAATAAATAATATATAAAAAAATTAAAATAAATA
* *
89086793 ATAGTTTAAAATATATAATATGTAAAAAAATTAAATTAAATAACGATA
1 ATAGTTTAAAATAAATAATATATAAAAAAATT--A--AAATAA--ATA
* *
89086841 AAATGATTTAAAATAAATAATATAAGAAAACAAACTTAAAATAAATA
1 ATA-G-TTTAAAATAAATAATAT-ATAAAA-AAA-TTAAAATAAATA
89086888 ATA
1 ATA
89086891 AGACAGTTTC
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
42 27 0.36
44 1 0.01
46 5 0.07
47 5 0.07
48 5 0.07
49 7 0.09
50 16 0.21
51 5 0.07
52 3 0.04
53 2 0.03
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (42 bp):
ATAGTTTAAAATAAATAATATATAAAAAAATTAAAATAAATA
Found at i:89095113 original size:36 final size:36
Alignment explanation
Indices: 89095073--89095141 Score: 84
Period size: 36 Copynumber: 1.9 Consensus size: 36
89095063 TCAACTTCTT
* *
89095073 TTTCTCTCTCAAACTCTTTTTCATTCTCCTTTTCAA
1 TTTCTCTCTCAAACTCATTTTCACTCTCCTTTTCAA
* * * *
89095109 TTTCTTTTTCAATCTCATTTTCACTCTCTTTTT
1 TTTCTCTCTCAAACTCATTTTCACTCTCCTTTT
89095142 GTTCTTTTTC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 27 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (36 bp):
TTTCTCTCTCAAACTCATTTTCACTCTCCTTTTCAA
Found at i:89095114 original size:24 final size:24
Alignment explanation
Indices: 89095081--89095141 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
89095071 TTTTTCTCTC
* * *
89095081 TCAAACTCTTTTTCATTCTCCTTT
1 TCAATCTCTTTTTCAATCTCATTT
*
89095105 TCAATTTCTTTTTCAATCTCATTT
1 TCAATCTCTTTTTCAATCTCATTT
*
89095129 TCACTCTCTTTTT
1 TCAATCTCTTTTT
89095142 GTTCTTTTTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.57
Consensus pattern (24 bp):
TCAATCTCTTTTTCAATCTCATTT
Found at i:89095141 original size:12 final size:12
Alignment explanation
Indices: 89095081--89095141 Score: 68
Period size: 12 Copynumber: 5.1 Consensus size: 12
89095071 TTTTTCTCTC
*
89095081 TCAAACTCTTTT
1 TCAATCTCTTTT
* *
89095093 TCATTCTCCTTT
1 TCAATCTCTTTT
*
89095105 TCAATTTCTTTT
1 TCAATCTCTTTT
*
89095117 TCAATCTCATTT
1 TCAATCTCTTTT
*
89095129 TCACTCTCTTTT
1 TCAATCTCTTTT
89095141 T
1 T
89095142 GTTCTTTTTC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 39 1.00
ACGTcount: A:0.16, C:0.26, G:0.00, T:0.57
Consensus pattern (12 bp):
TCAATCTCTTTT
Found at i:89099635 original size:24 final size:23
Alignment explanation
Indices: 89099603--89099653 Score: 93
Period size: 24 Copynumber: 2.2 Consensus size: 23
89099593 ATGTTTAGAT
89099603 CACATTGTATGTAATTTCCATGAC
1 CACATTGTATGTAATTTCCAT-AC
89099627 CACATTGTATGTAATTTCCATAC
1 CACATTGTATGTAATTTCCATAC
89099650 CACA
1 CACA
89099654 CATCCATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.31, C:0.24, G:0.10, T:0.35
Consensus pattern (23 bp):
CACATTGTATGTAATTTCCATAC
Found at i:89101916 original size:27 final size:27
Alignment explanation
Indices: 89101886--89101958 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
89101876 TGTCTTGAAT
89101886 TTGTTCGATATTGATTATGTTTTAAGC
1 TTGTTCGATATTGATTATGTTTTAAGC
* *
89101913 TTGTTAGATATTGAATTTATTATGTTTTAAGG
1 TTGTTCGATATTG-----ATTATGTTTTAAGC
89101945 TTGTTCGATATTGA
1 TTGTTCGATATTGA
89101959 AATGATTGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
27 13 0.34
32 25 0.66
ACGTcount: A:0.25, C:0.04, G:0.19, T:0.52
Consensus pattern (27 bp):
TTGTTCGATATTGATTATGTTTTAAGC
Found at i:89101938 original size:32 final size:32
Alignment explanation
Indices: 89101899--89101959 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
89101889 TTCGATATTG
89101899 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTTAAGCTTGTTAGATATTGAATTT
* *
89101931 ATTATGTTTTAAGGTTGTTCGATATTGAA
1 ATTATGTTTTAAGCTTGTTAGATATTGAA
89101960 ATGATTGATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.03, G:0.18, T:0.51
Consensus pattern (32 bp):
ATTATGTTTTAAGCTTGTTAGATATTGAATTT
Found at i:89103184 original size:13 final size:13
Alignment explanation
Indices: 89103166--89103212 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
89103156 ATGTAAAAAT
89103166 AATTTAAAATATA
1 AATTTAAAATATA
* *
89103179 AATTTATTAATAAA
1 AATTTA-AAATATA
89103193 CAATTTAAAATATA
1 -AATTTAAAATATA
89103207 AATTTA
1 AATTTA
89103213 TTAACAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 12 0.43
14 10 0.36
15 6 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (13 bp):
AATTTAAAATATA
Found at i:89105967 original size:21 final size:21
Alignment explanation
Indices: 89105943--89105984 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
89105933 ATACATACTT
89105943 ATATTATCATTATAAAAGTAG
1 ATATTATCATTATAAAAGTAG
89105964 ATATTATCATTATAAAAGTAG
1 ATATTATCATTATAAAAGTAG
89105985 CGAATTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.38
Consensus pattern (21 bp):
ATATTATCATTATAAAAGTAG
Found at i:89108044 original size:7 final size:7
Alignment explanation
Indices: 89108032--89108067 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
89108022 ACCATCCCAA
89108032 TATTTTT
1 TATTTTT
89108039 TATTTTT
1 TATTTTT
89108046 TATTTTT
1 TATTTTT
89108053 TATTTTT
1 TATTTTT
89108060 TATTTTT
1 TATTTTT
89108067 T
1 T
89108068 TTTATGCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (7 bp):
TATTTTT
Found at i:89108162 original size:23 final size:23
Alignment explanation
Indices: 89108132--89108188 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
89108122 AACATAAACA
89108132 AAGAGAAAGTACTATTTTTGTGT
1 AAGAGAAAGTACTATTTTTGTGT
89108155 AAGAGAAAGTACTATTTTTGTGT
1 AAGAGAAAGTACTATTTTTGTGT
89108178 AAGCA-AAAGTA
1 AAG-AGAAAGTA
89108189 TACCTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 32 0.97
24 1 0.03
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (23 bp):
AAGAGAAAGTACTATTTTTGTGT
Found at i:89110478 original size:16 final size:15
Alignment explanation
Indices: 89110457--89110486 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
89110447 AGAAAGGACA
89110457 AACAAAGAAAACAAAT
1 AACAAAG-AAACAAAT
89110473 AACAAAGAAACAAA
1 AACAAAGAAACAAA
89110487 AAATAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.77, C:0.13, G:0.07, T:0.03
Consensus pattern (15 bp):
AACAAAGAAACAAAT
Found at i:89111453 original size:24 final size:25
Alignment explanation
Indices: 89111413--89111463 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
89111403 ATTCATTTAT
89111413 TTATTTTAAAATATTTTATTAT-ATG
1 TTATTTTAAAATATTTTA-TATGATG
89111438 TTATTTT-AAATATTTTATATGATG
1 TTATTTTAAAATATTTTATATGATG
89111462 TT
1 TT
89111464 TACATTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 3 0.12
24 15 0.60
25 7 0.28
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (25 bp):
TTATTTTAAAATATTTTATATGATG
Found at i:89111776 original size:26 final size:25
Alignment explanation
Indices: 89111722--89111792 Score: 76
Period size: 24 Copynumber: 2.9 Consensus size: 25
89111712 TATTTTTAAC
* *
89111722 TTTTATCTATTATT-TTTAAAATTG
1 TTTTATCTATTCTTATTTTAAATTG
*
89111746 ATTTATCTATTGCTTATTTTAAATTG
1 TTTTATCTATT-CTTATTTTAAATTG
89111772 TTTTA-C-ATATCTTATTTTAAA
1 TTTTATCTAT-TCTTATTTTAAA
89111793 CTCTATTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 23 0.57
25 4 0.10
26 13 0.32
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59
Consensus pattern (25 bp):
TTTTATCTATTCTTATTTTAAATTG
Found at i:89116303 original size:6 final size:6
Alignment explanation
Indices: 89116281--89116314 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
89116271 CCTTTCATTA
*
89116281 TTTATT TATTCTT TTTATT TTTATT TTTATT TTT
1 TTTATT T-TTATT TTTATT TTTATT TTTATT TTT
89116315 GGGTTGAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:89120013 original size:4 final size:4
Alignment explanation
Indices: 89119999--89120042 Score: 54
Period size: 4 Copynumber: 11.0 Consensus size: 4
89119989 TTTAAATTTA
* *
89119999 AATT AATTT AATT AATA AATT AATT AATT AATT AA-A AATT AATT
1 AATT AA-TT AATT AATT AATT AATT AATT AATT AATT AATT AATT
89120043 CTAAAATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
3 2 0.06
4 28 0.82
5 4 0.12
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (4 bp):
AATT
Found at i:89120023 original size:12 final size:12
Alignment explanation
Indices: 89119997--89120081 Score: 52
Period size: 11 Copynumber: 7.3 Consensus size: 12
89119987 ATTTTAAATT
89119997 TAAATTAATTTAA
1 TAAATTAA-TTAA
* *
89120010 TTAATAAATTAA
1 TAAATTAATTAA
*
89120022 TTAATTAATTAA
1 TAAATTAATTAA
*
89120034 -AAATTAATT-C
1 TAAATTAATTAA
* *
89120044 TAAAATATTTAA
1 TAAATTAATTAA
*
89120056 -AATTTAA-TAA
1 TAAATTAATTAA
**
89120066 TAAAAAAATTAA
1 TAAATTAATTAA
89120078 TAAA
1 TAAA
89120082 ATTTTTTAAA
Statistics
Matches: 54, Mismatches: 14, Indels: 9
0.70 0.18 0.12
Matches are distributed among these distances:
10 3 0.06
11 23 0.43
12 22 0.41
13 6 0.11
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (12 bp):
TAAATTAATTAA
Found at i:89120090 original size:35 final size:38
Alignment explanation
Indices: 89120051--89120122 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 38
89120041 TTCTAAAATA
89120051 TTTAAA-ATTTAATA-ATAAAAA-AA-TTAATAAAATTT
1 TTTAAACA-TTAATATATAAAAAGAACTTAATAAAATTT
*
89120086 TTTAAACATTAATATTTAAAAAGAACTTTAATAAAAT
1 TTTAAACATTAATATATAAAAAGAAC-TTAATAAAAT
89120123 AATAATCTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
35 12 0.39
36 7 0.23
37 2 0.06
39 10 0.32
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (38 bp):
TTTAAACATTAATATATAAAAAGAACTTAATAAAATTT
Found at i:89121632 original size:16 final size:16
Alignment explanation
Indices: 89121608--89121638 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
89121598 TAAATTATGT
*
89121608 ATATTAAAATAAAAAC
1 ATATAAAAATAAAAAC
89121624 ATATAAAAATAAAAA
1 ATATAAAAATAAAAA
89121639 TAAAGTTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.23
Consensus pattern (16 bp):
ATATAAAAATAAAAAC
Found at i:89126173 original size:17 final size:19
Alignment explanation
Indices: 89126136--89126173 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
89126126 GAAATAAAAA
89126136 TATAAAAATCAAATGTTTT
1 TATAAAAATCAAATGTTTT
*
89126155 TATAAACAT-AAAT-TTTT
1 TATAAAAATCAAATGTTTT
89126172 TA
1 TA
89126174 ATTTTATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (19 bp):
TATAAAAATCAAATGTTTT
Found at i:89126367 original size:11 final size:11
Alignment explanation
Indices: 89126351--89126379 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
89126341 AAAAAATTGG
89126351 ATGATGACATT
1 ATGATGACATT
89126362 ATGATGACATT
1 ATGATGACATT
89126373 ATGATGA
1 ATGATGA
89126380 TTTGATCCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (11 bp):
ATGATGACATT
Found at i:89140577 original size:45 final size:46
Alignment explanation
Indices: 89140522--89140620 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 46
89140512 AAAACTACAA
* * * * * *
89140522 ATCTGATCTTCGCTGAG-TGGAGCGGGGCAGATCAAATTTCGGTAG
1 ATCTTATCTTCGCTGAGCAGGAACGGAGCAGATCAAATTTCAGCAG
* *
89140567 ATCTTATCTTCGCTGAGCAGGAACGGAGCGGATCAAATTTTAGCAG
1 ATCTTATCTTCGCTGAGCAGGAACGGAGCAGATCAAATTTCAGCAG
89140613 ATCTTATC
1 ATCTTATC
89140621 CCACTGGCAG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 16 0.36
46 29 0.64
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.28
Consensus pattern (46 bp):
ATCTTATCTTCGCTGAGCAGGAACGGAGCAGATCAAATTTCAGCAG
Found at i:89140884 original size:44 final size:44
Alignment explanation
Indices: 89140834--89140947 Score: 174
Period size: 44 Copynumber: 2.6 Consensus size: 44
89140824 ATGGCAAGCT
* * *
89140834 TTATCTCTCTGAGCAGTAGTGGAGCAAGCTGAAGATTACAGATC
1 TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAAGATTACAGATC
*
89140878 TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAATATTACAGATC
1 TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAAGATTACAGATC
* *
89140922 TTATCTCCCTAAGCAGCAGCGGAGCA
1 TTATCTCCCTGAGCAGCAGTGGAGCA
89140948 GATCAAAGAC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.25
Consensus pattern (44 bp):
TTATCTCCCTGAGCAGCAGTGGAGCAAGATGAAGATTACAGATC
Found at i:89141085 original size:44 final size:45
Alignment explanation
Indices: 89141037--89141193 Score: 122
Period size: 44 Copynumber: 3.6 Consensus size: 45
89141027 AGAAGTAGTG
*
89141037 GAGCAGATCGAAGATAACAAACCTTATCTCTCTGAAGTTGCAG-A
1 GAGCAGATCGAAGATAACAAACCTTATCTCTCTGAAGCTGCAGCA
* * * ** * * *
89141081 GAGCAGGTTGAAG-TTACAAGTCTTATCTCTCTGAAGCCGTAGCG
1 GAGCAGATCGAAGATAACAAACCTTATCTCTCTGAAGCTGCAGCA
* * * * * * * **
89141125 GAGCATATTGAAGATAACAGATCTTATCTCCCT-AAGCAGTAGTG
1 GAGCAGATCGAAGATAACAAACCTTATCTCTCTGAAGCTGCAGCA
*
89141169 GAGCAGATCGAAGATACCAAACCTT
1 GAGCAGATCGAAGATAACAAACCTT
89141194 GTTTCTTTGA
Statistics
Matches: 89, Mismatches: 22, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
43 23 0.26
44 51 0.57
45 15 0.17
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (45 bp):
GAGCAGATCGAAGATAACAAACCTTATCTCTCTGAAGCTGCAGCA
Found at i:89146482 original size:14 final size:14
Alignment explanation
Indices: 89146427--89146478 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
89146417 GCACAATTTG
*
89146427 TAATAAAAC-ATATA
1 TAATAATACAATA-A
* *
89146441 TAATAATACGACAA
1 TAATAATACAATAA
89146455 TAATAATACAATAA
1 TAATAATACAATAA
89146469 TAATAA-ACAA
1 TAATAATACAA
89146479 ATAAATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 4 0.12
14 27 0.82
15 2 0.06
ACGTcount: A:0.63, C:0.10, G:0.02, T:0.25
Consensus pattern (14 bp):
TAATAATACAATAA
Found at i:89146574 original size:3 final size:3
Alignment explanation
Indices: 89146566--89146612 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
89146556 GATAATAGAA
89146566 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
89146613 ATGAATAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:89146725 original size:3 final size:3
Alignment explanation
Indices: 89146717--89147115 Score: 187
Period size: 3 Copynumber: 132.0 Consensus size: 3
89146707 TAAAATATAT
*
89146717 ATA ATA ATA ATA ATA ATA AT- ATA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * *
89146764 ATAA ATA ATA GTA ATA ATA ATT ACA AAA ATG ATA ATA A-A ATA A-G
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
89146808 ATG ATA ATA AGA ATA ATA ATA ATA A-A GCA-A AGA ATA ATTA A-A ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA A-TA ATA ATA
** * * * * *
89146853 ATA CCGGA ATA ATGA A-A ATA ATA CCTTA ATA ACA ATG AT- ATG GTA
1 ATA --ATA ATA AT-A ATA ATA ATA --ATA ATA ATA ATA ATA ATA ATA
* * * * * *
89146898 ATA ATA ATA GTA ATA GAGA ACA ACA ATA CATTA ATA ATA ATA TATG TTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA -A-TA ATA ATA ATA -ATA ATA
*
89146947 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA TGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
* ** * * *
89146993 AAA AGGG A-A ATA ATA AT- ATA GTA A-A ATA ATA ATA AT- ATG TTA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
89147035 ATA AGA GTA ATA ATA GTA GTA ATA ATA GTTA ATG ATA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA
* *
89147081 CATA ATA ATA GTA A-A A-A ATA ATA GTA ATA ATA ATA
1 -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
89147116 TATTAAATTG
Statistics
Matches: 301, Mismatches: 66, Indels: 58
0.71 0.16 0.14
Matches are distributed among these distances:
2 24 0.08
3 248 0.82
4 24 0.08
5 5 0.02
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:89147818 original size:16 final size:15
Alignment explanation
Indices: 89147797--89147830 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
89147787 AATGGGTTCG
89147797 AAAAAGAAAGAAAAAT
1 AAAAAGAAA-AAAAAT
*
89147813 AAAAAGAAAATAAAT
1 AAAAAGAAAAAAAAT
89147828 AAA
1 AAA
89147831 CCTTTATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (15 bp):
AAAAAGAAAAAAAAT
Found at i:89160635 original size:127 final size:126
Alignment explanation
Indices: 89160496--89160814 Score: 401
Period size: 127 Copynumber: 2.5 Consensus size: 126
89160486 AACGAAAAAC
* *
89160496 CGAAACCCAGCACGGCAGGGCACGATTCTTCAATCTTCCAAACATTGAACATTGCCTTG-CTTAG
1 CGAAACCCAGCACGGTAGGGCACGATTCCTCAAT-TTCCAAACATTGAACATTGCCTTGTCTTAG
* *
89160560 AAATTTATAAAACATGAGTGAAATAT-TAAAGGAACATTC-AATTATTTGGAACAAACCGGAAAT
65 -AATTTAGAAAACACGAGTGAAAT-TCTAAAGGAACATTCGAA-TATTTGGAACAAACCGGAAAT
* * * * *
89160623 CGAAAACCAGCACGATAGGGCACGATTCCCCGAATTTCTAAACATTGAACATTGCCTTGTTTTAG
1 CGAAACCCAGCACGGTAGGGCACGATTCCTC-AATTTCCAAACATTGAACATTGCCTTGTCTTAG
* * * *
89160688 AATTTGGAAAACACGAGTGAAATTCTAAAGGAATATTCGAATATTTTGAACAAACGGGAAAT
65 AATTTAGAAAACACGAGTGAAATTCTAAAGGAACATTCGAATATTTGGAACAAACCGGAAAT
* * **
89160750 CGAAACCCAGCACGGTAGGGCACGACTTCCTGAATTTCCAAGCATCAAACATTGCCTTCGTCTTA
1 CGAAACCCAGCACGGTAGGGCACGA-TTCCTCAATTTCCAAACATTGAACATTGCCTT-GTCTTA
89160815 AGGAATTTTC
Statistics
Matches: 164, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
126 1 0.01
127 145 0.88
128 18 0.11
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (126 bp):
CGAAACCCAGCACGGTAGGGCACGATTCCTCAATTTCCAAACATTGAACATTGCCTTGTCTTAGA
ATTTAGAAAACACGAGTGAAATTCTAAAGGAACATTCGAATATTTGGAACAAACCGGAAAT
Found at i:89161546 original size:18 final size:18
Alignment explanation
Indices: 89161501--89161536 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
89161491 AAGCCTCCCA
89161501 AAAAAAAAACCTAACCCC
1 AAAAAAAAACCTAACCCC
89161519 AAAAAAAAACCTAACCCC
1 AAAAAAAAACCTAACCCC
89161537 CCCAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.33, G:0.00, T:0.06
Consensus pattern (18 bp):
AAAAAAAAACCTAACCCC
Found at i:89162391 original size:19 final size:19
Alignment explanation
Indices: 89162307--89162395 Score: 56
Period size: 19 Copynumber: 4.3 Consensus size: 19
89162297 TAATATTTTC
*
89162307 TTTTATTGTAGATATTATTA
1 TTTTA-TGTACATATTATTA
89162327 TTATTAT-TACATACTT-TTA
1 TT-TTATGTACATA-TTATTA
* *
89162346 TTATATGCATATATATATATATGTA
1 TT-T-T--ATGTACATAT-TAT-TA
89162371 TTTTATGTACATATTATTA
1 TTTTATGTACATATTATTA
89162390 TTTTAT
1 TTTTAT
89162396 ATTATTATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 19
0.71 0.05 0.24
Matches are distributed among these distances:
19 20 0.36
20 9 0.16
21 11 0.20
22 3 0.05
23 7 0.12
24 2 0.04
25 4 0.07
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:89164107 original size:12 final size:12
Alignment explanation
Indices: 89164087--89164122 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
89164077 ATTCATTTGA
*
89164087 CATTTATGCATT
1 CATTCATGCATT
89164099 CATTCATGCATT
1 CATTCATGCATT
*
89164111 CATTCATTCATT
1 CATTCATGCATT
89164123 GCATATCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:89173016 original size:180 final size:180
Alignment explanation
Indices: 89172714--89173072 Score: 603
Period size: 180 Copynumber: 2.0 Consensus size: 180
89172704 CTTAGAGTTT
*
89172714 GGTAATAGAGTGGCTTGTACATAGATTTAGAACCATATGAATTTTTATTGTAAAGTAGCTAAGTG
1 GGTAATAGAATGGCTTGTACATAGATTTAGAACCATATGAATTTTTATTGTAAAGTAGCTAAGTG
* *
89172779 GTTCCAAAACTATGTCATGCATGTTTAATATCATTTTGTACCTTGAGAAAATCTTTCTTAGATGG
66 GTTCCAAAACTATATCATGCATATTTAATATCATTTTGTACCTTGAGAAAATCTTTCTTAGATGG
*
89172844 ATATACTCATGCATTATATG-AGTTTTTTGAATGGTAATCTAACATATTTA
131 ATATACTCATGCATTATATGAAG-TTTTTGAATGATAATCTAACATATTTA
* * *
89172894 GGTAATAGAATGGCTTGTACATAGATTTAGAATCATATGGATTTTTGTTGTAAAGTAGCTAAGTG
1 GGTAATAGAATGGCTTGTACATAGATTTAGAACCATATGAATTTTTATTGTAAAGTAGCTAAGTG
* **
89172959 GTTCCGAAACTATATCATGCATATTTAATATCATTTTGTACCTTGAGATGATCTTTCTTAGATGG
66 GTTCCAAAACTATATCATGCATATTTAATATCATTTTGTACCTTGAGAAAATCTTTCTTAGATGG
*
89173024 ATATACTCGTGCATTATATGAAGTTTTTGAATGATAATCTAACATATTT
131 ATATACTCATGCATTATATGAAGTTTTTGAATGATAATCTAACATATTT
89173073 TGAGTCCTAA
Statistics
Matches: 167, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
180 165 0.99
181 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.40
Consensus pattern (180 bp):
GGTAATAGAATGGCTTGTACATAGATTTAGAACCATATGAATTTTTATTGTAAAGTAGCTAAGTG
GTTCCAAAACTATATCATGCATATTTAATATCATTTTGTACCTTGAGAAAATCTTTCTTAGATGG
ATATACTCATGCATTATATGAAGTTTTTGAATGATAATCTAACATATTTA
Found at i:89179203 original size:2 final size:2
Alignment explanation
Indices: 89179196--89179230 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
89179186 TAAATTTTAT
89179196 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
89179231 GAAAGATATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:89181411 original size:15 final size:15
Alignment explanation
Indices: 89181391--89181421 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
89181381 TTAGAATTTG
89181391 ATTGATGGGTGACCT
1 ATTGATGGGTGACCT
89181406 ATTGATGGGTGACCT
1 ATTGATGGGTGACCT
89181421 A
1 A
89181422 GCTTTGGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (15 bp):
ATTGATGGGTGACCT
Found at i:89181893 original size:11 final size:11
Alignment explanation
Indices: 89181877--89181901 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
89181867 GGTATTAAAA
89181877 TAGGTAAAATG
1 TAGGTAAAATG
89181888 TAGGTAAAATG
1 TAGGTAAAATG
89181899 TAG
1 TAG
89181902 ATTGTACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (11 bp):
TAGGTAAAATG
Found at i:89184382 original size:12 final size:12
Alignment explanation
Indices: 89184365--89184395 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
89184355 CCGTATTAAT
*
89184365 TTTTTTATATTA
1 TTTTTTATATAA
89184377 TTTTTTATATAA
1 TTTTTTATATAA
89184389 TTTTTTA
1 TTTTTTA
89184396 AAAAATATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTTATATAA
Found at i:89186044 original size:2 final size:2
Alignment explanation
Indices: 89186037--89186062 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
89186027 ACATATTTTC
89186037 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
89186063 TCACTCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:89186840 original size:21 final size:19
Alignment explanation
Indices: 89186807--89186848 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
89186797 GACTAAACTG
89186807 GTCAAAATGTAAAATTCTGA
1 GTCAAAATGT-AAATTCTGA
*
89186827 GTCAAAACTGTAAATTTTGA
1 GTCAAAA-TGTAAATTCTGA
89186847 GT
1 GT
89186849 TACAAGGGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (19 bp):
GTCAAAATGTAAATTCTGA
Found at i:89189681 original size:26 final size:26
Alignment explanation
Indices: 89189645--89189754 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
89189635 CATGAAATTC
89189645 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
89189671 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
89189697 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
89189723 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
89189749 TTATCA
1 TTATCA
89189755 ATTTGTATCA
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.36, C:0.25, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:89191377 original size:29 final size:31
Alignment explanation
Indices: 89191333--89191390 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
89191323 TTATATTAAA
89191333 TAAAAAATTAAAATAA-TTATCAAACACATT
1 TAAAAAATTAAAATAATTTATCAAACACATT
* *
89191363 TAAAATATT-AAATAATTTATTAAACACA
1 TAAAAAATTAAAATAATTTATCAAACACA
89191391 CCCTAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.33
Consensus pattern (31 bp):
TAAAAAATTAAAATAATTTATCAAACACATT
Found at i:89192482 original size:18 final size:19
Alignment explanation
Indices: 89192448--89192486 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
89192438 AATTTTACTT
*
89192448 TACATAATAAATTATATAA
1 TACATAATAAATAATATAA
89192467 TACATAA-AAATAATATAA
1 TACATAATAAATAATATAA
89192485 TA
1 TA
89192487 TAATCTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
TACATAATAAATAATATAA
Found at i:89197214 original size:20 final size:20
Alignment explanation
Indices: 89197189--89197227 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
89197179 ACCAAACAAA
*
89197189 AAAGAAAAAGGGTAAAAATT
1 AAAGAAAAAGGCTAAAAATT
89197209 AAAGAAAAAGGCTAAAAAT
1 AAAGAAAAAGGCTAAAAAT
89197228 GAATTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.67, C:0.03, G:0.18, T:0.13
Consensus pattern (20 bp):
AAAGAAAAAGGCTAAAAATT
Found at i:89199687 original size:1 final size:1
Alignment explanation
Indices: 89199681--89199707 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
89199671 GACCACCCTC
89199681 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
89199708 AAATTCCTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:89203051 original size:42 final size:42
Alignment explanation
Indices: 89202912--89203594 Score: 422
Period size: 42 Copynumber: 16.3 Consensus size: 42
89202902 CAGATAAACC
* * * *
89202912 GAAGGAAAGATACTGGCACAAATAGTGCATCATCGGGCA-AGCT
1 GAAGTAAATATACTGGCACATA-AGTGCATCATCGGACATA-CT
* * * * * *
89202955 AAAGCAATTATA-TGGCACACAAGGTGCATCATCGGATGA-ACC
1 GAAGTAAATATACTGGCACATAA-GTGCATCATCGGA-CATACT
* * * * * * *
89202997 AAAGCAATTATATTGGTACATAAGTGCATCATCAGATATACT
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * * *
89203039 GAAGTAAATATATTGGCACGTAAGTGTATCATTGGACATA-T
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
*
89203080 CGAAGTAAATATACTGACACATAAGTGCATCATCGGACATA-T
1 -GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * *
89203122 AAAAGTAAATATAATGGCACGTAAGTGCATCATCGGACATACT
1 -GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * * *
89203165 GAAGTAAATATACTGGCACGTAAATGTATCATTGGACATACCT
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATA-CT
* * * *
89203208 -AAGTAAATATACTAGCA-AGTAAGTGCATAATCAGACATACC
1 GAAGTAAATATACTGGCACA-TAAGTGCATCATCGGACATACT
* ** * * *
89203249 GAAGTAAATATACTGACATGTAAGTACATCATCGGATATACC
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * * *
89203291 GAAGTAAATATACTGGCACGTAAGTACATCATTGGACATACC
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * ** * *
89203333 AAAGTAAATATACTAGCACGCAAGTGCATCATCGAATATA-T
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * * * * *
89203374 CGAAGAAAATATACTAGTA-AGTAAGTGCA-CAATCAGATATACC
1 -GAAGTAAATATACTGGCACA-TAAGTGCATC-ATCGGACATACT
* * ** *
89203417 AAAGTAAATATACT-ACATGTAAGTGCATCATCGGATATACT
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
** * ** *
89203458 GAAGTAAATATACTGGCATGTAAGTGCGTCATTAGACATACC
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * * * * * * * *
89203500 G-A--AAATATACTAGTATATAAATGCATTATCGAATATTCC
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
* * * * ** *
89203539 GAAGTAAATATACTAGAAAATAAGTGCATAATTAGACATACC
1 GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
*
89203581 AAAGTAAATATACT
1 GAAGTAAATATACT
89203595 AGCAAATCCT
Statistics
Matches: 513, Mismatches: 107, Indels: 41
0.78 0.16 0.06
Matches are distributed among these distances:
39 27 0.05
40 1 0.00
41 38 0.07
42 426 0.83
43 21 0.04
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.25
Consensus pattern (42 bp):
GAAGTAAATATACTGGCACATAAGTGCATCATCGGACATACT
Found at i:89203102 original size:84 final size:84
Alignment explanation
Indices: 89203017--89203594 Score: 548
Period size: 84 Copynumber: 6.9 Consensus size: 84
89203007 TATTGGTACA
* * * ** *
89203017 TAAGTGCATCATCAGATATACTGAAGTAAATATATTGGCACGTAAGTGTATCATTGGACATATCG
1 TAAGTGCATCATCGGATATACTGAAGTAAATATACTGGCACGTAAGTGCATCATCAGACATACCG
*
89203082 AAGTAAATATACTGACACA
66 AAGTAAATATACTGACACG
* * * * *
89203101 TAAGTGCATCATCGGACATA-TAAAAGTAAATATAATGGCACGTAAGTGCATCATCGGACATACT
1 TAAGTGCATCATCGGATATACT-GAAGTAAATATACTGGCACGTAAGTGCATCATCAGACATACC
*
89203165 GAAGTAAATATACTGGCACG
65 GAAGTAAATATACTGACACG
* * * * * * *
89203185 TAAATGTATCATTGGACATACCT-AAGTAAATATACTAGCAAGTAAGTGCATAATCAGACATACC
1 TAAGTGCATCATCGGATATA-CTGAAGTAAATATACTGGCACGTAAGTGCATCATCAGACATACC
*
89203249 GAAGTAAATATACTGACATG
65 GAAGTAAATATACTGACACG
* * * ** *
89203269 TAAGTACATCATCGGATATACCGAAGTAAATATACTGGCACGTAAGTACATCATTGGACATACCA
1 TAAGTGCATCATCGGATATACTGAAGTAAATATACTGGCACGTAAGTGCATCATCAGACATACCG
89203334 AAGTAAATATACT-AGCACG
66 AAGTAAATATACTGA-CACG
* * * * * * *
89203353 CAAGTGCATCATCGAATATA-TCGAAGAAAATATACTAGTAAGTAAGTGCA-CAATCAGATATAC
1 TAAGTGCATCATCGGATATACT-GAAGTAAATATACTGGCACGTAAGTGCATC-ATCAGACATAC
* *
89203416 CAAAGTAAATATACT-ACATG
64 CGAAGTAAATATACTGACACG
* * *
89203436 TAAGTGCATCATCGGATATACTGAAGTAAATATACTGGCATGTAAGTGCGTCATTAGACATACCG
1 TAAGTGCATCATCGGATATACTGAAGTAAATATACTGGCACGTAAGTGCATCATCAGACATACCG
*
89203501 -A--AAATATACTAGTATA--
66 AAGTAAATATACT-G-ACACG
* * * * * * * ** * * *
89203517 TAAATGCATTATCGAATATTCCGAAGTAAATATACTAGAAAATAAGTGCATAATTAGACATACCA
1 TAAGTGCATCATCGGATATACTGAAGTAAATATACTGGCACGTAAGTGCATCATCAGACATACCG
89203582 AAGTAAATATACT
66 AAGTAAATATACT
89203595 AGCAAATCCT
Statistics
Matches: 408, Mismatches: 71, Indels: 30
0.80 0.14 0.06
Matches are distributed among these distances:
80 9 0.02
81 53 0.13
82 2 0.00
83 60 0.15
84 283 0.69
86 1 0.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (84 bp):
TAAGTGCATCATCGGATATACTGAAGTAAATATACTGGCACGTAAGTGCATCATCAGACATACCG
AAGTAAATATACTGACACG
Found at i:89203153 original size:126 final size:126
Alignment explanation
Indices: 89203017--89203598 Score: 561
Period size: 126 Copynumber: 4.7 Consensus size: 126
89203007 TATTGGTACA
* * * *
89203017 TAAGTGCATCATCAGATATACTGAAGTAAATATATTGGCACGTAAGTGTATCATTGGACATATCG
1 TAAGTGCATCATCAGATATACCGAAGTAAATATACTGGCACGTAAGTGCATCATTGGACATACCG
** * *
89203082 AAGTAAATATACT-GACACATAAGTGCATCATCGGACATATAAAAGTAAATATAATGGCACG
66 AAGTAAATATACTAG-CACATAAGTGCATCATCGGACATATCGAAGTAAATATACTGGCAAG
* * * * * *
89203143 TAAGTGCATCATCGGACATACTGAAGTAAATATACTGGCACGTAAATGTATCATTGGACATACCT
1 TAAGTGCATCATCAGATATACCGAAGTAAATATACTGGCACGTAAGTGCATCATTGGACATACCG
* * * * *
89203208 AAGTAAATATACTAGCA-AGTAAGTGCATAATCAGACATACCGAAGTAAATATACTGACATG
66 AAGTAAATATACTAGCACA-TAAGTGCATCATCGGACATATCGAAGTAAATATACTGGCAAG
* * * *
89203269 TAAGTACATCATCGGATATACCGAAGTAAATATACTGGCACGTAAGTACATCATTGGACATACCA
1 TAAGTGCATCATCAGATATACCGAAGTAAATATACTGGCACGTAAGTGCATCATTGGACATACCG
** * * * * *
89203334 AAGTAAATATACTAGCACGCAAGTGCATCATCGAATATATCGAAGAAAATATACTAGTAAG
66 AAGTAAATATACTAGCACATAAGTGCATCATCGGACATATCGAAGTAAATATACTGGCAAG
* * * * * *
89203395 TAAGTGCA-CAATCAGATATACCAAAGTAAATATACT-ACATGTAAGTGCATCATCGGATATACT
1 TAAGTGCATC-ATCAGATATACCGAAGTAAATATACTGGCACGTAAGTGCATCATTGGACATACC
* ** * ** * * *
89203458 GAAGTAAATATACTGGCATGTAAGTGCGTCATTAGACATACCG-A--AAATATACTAGTATA-
65 GAAGTAAATATACTAGCACATAAGTGCATCATCGGACATATCGAAGTAAATATACTGGCA-AG
* * * * * ** * *
89203517 TAAATGCATTATC-GAATATTCCGAAGTAAATATACTAGAAAATAAGTGCATAATTAGACATACC
1 TAAGTGCATCATCAG-ATATACCGAAGTAAATATACTGGCACGTAAGTGCATCATTGGACATACC
*
89203581 AAAGTAAATATACTAGCA
65 GAAGTAAATATACTAGCA
89203599 AATCCTATTT
Statistics
Matches: 381, Mismatches: 67, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
121 1 0.00
122 42 0.11
123 35 0.09
124 1 0.00
125 56 0.15
126 245 0.64
127 1 0.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (126 bp):
TAAGTGCATCATCAGATATACCGAAGTAAATATACTGGCACGTAAGTGCATCATTGGACATACCG
AAGTAAATATACTAGCACATAAGTGCATCATCGGACATATCGAAGTAAATATACTGGCAAG
Found at i:89203595 original size:42 final size:42
Alignment explanation
Indices: 89203017--89203598 Score: 485
Period size: 42 Copynumber: 14.0 Consensus size: 42
89203007 TATTGGTACA
** * * * *
89203017 TAAGTGCATCATCAGATATACTGAAGTAAATATATTGGCACG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* * *
89203059 TAAGTGTATCATTGGACATATCGAAGTAAATATACT-GACACA
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAG-CACG
* *** * *
89203101 TAAGTGCATCATCGGACATATAAAAGTAAATATAATGGCACG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* * *
89203143 TAAGTGCATCATCGGACATACTGAAGTAAATATACTGGCACG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* * * *
89203185 TAAATGTATCATTGGACATACCTAAGTAAATATACTAGCAAG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* ** *
89203227 TAAGTGCATAATCAGACATACCGAAGTAAATATACT-GACATG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAG-CACG
* * * *
89203269 TAAGTACATCATCGGATATACCGAAGTAAATATACTGGCACG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* *
89203311 TAAGTACATCATTGGACATACCAAAGTAAATATACTAGCACG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* * * * * * * *
89203353 CAAGTGCATCATCGAATATATCGAAGAAAATATACTAGTAAG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
** * * *
89203395 TAAGTGCA-CAATCAGATATACCAAAGTAAATATACTA-CATG
1 TAAGTGCATC-ATTGGACATACCGAAGTAAATATACTAGCACG
* * * * *
89203436 TAAGTGCATCATCGGATATACTGAAGTAAATATACTGGCATG
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* * * **
89203478 TAAGTGCGTCATTAGACATACCG-A--AAATATACTAGTATA
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* * * * * * * **
89203517 TAAATGCATTATCGAATATTCCGAAGTAAATATACTAGAAAA
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
* * *
89203559 TAAGTGCATAATTAGACATACCAAAGTAAATATACTAGCA
1 TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCA
89203599 AATCCTATTT
Statistics
Matches: 440, Mismatches: 90, Indels: 20
0.80 0.16 0.04
Matches are distributed among these distances:
39 27 0.06
40 1 0.00
41 37 0.08
42 373 0.85
43 2 0.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (42 bp):
TAAGTGCATCATTGGACATACCGAAGTAAATATACTAGCACG
Found at i:89204858 original size:25 final size:24
Alignment explanation
Indices: 89204830--89204883 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
89204820 TCAAAATACG
*
89204830 TACATAGAATAGTATAAAAAATATA
1 TACATAGAA-AATATAAAAAATATA
* *
89204855 TACAT-GAAAATATTAAAAATATT
1 TACATAGAAAATATAAAAAATATA
89204878 TACATA
1 TACATA
89204884 ATATATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
23 17 0.68
24 3 0.12
25 5 0.20
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (24 bp):
TACATAGAAAATATAAAAAATATA
Found at i:89204895 original size:28 final size:28
Alignment explanation
Indices: 89204864--89204931 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 28
89204854 ATACATGAAA
* *
89204864 ATATTAAAAATATTTAC-ATA-ATATAT
1 ATATTAAAAATATATACGATATATACAT
*
89204890 ATATATATAAAATATATACGATATATACCT
1 ATAT-TA-AAAATATATACGATATATACAT
*
89204920 ATATTAGAAATA
1 ATATTAAAAATA
89204932 ATAATAGTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
26 4 0.12
27 2 0.06
28 15 0.44
29 5 0.15
30 8 0.24
ACGTcount: A:0.53, C:0.06, G:0.03, T:0.38
Consensus pattern (28 bp):
ATATTAAAAATATATACGATATATACAT
Found at i:89204982 original size:2 final size:2
Alignment explanation
Indices: 89204975--89205004 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
89204965 CATAAGTATG
89204975 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
89205005 AAATAATGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:89205104 original size:22 final size:23
Alignment explanation
Indices: 89205043--89205115 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
89205033 AGTATTAGAA
* *
89205043 ATATACGTACAATAGTATAAAAGAT
1 ATATACGT--AATAATATTAAAGAT
*
89205068 ATATAAC-TAACAATATTAAAG-T
1 ATAT-ACGTAATAATATTAAAGAT
*
89205090 ATATACGTAATAATATATAAAAAT
1 ATATACGTAATAATAT-TAAAGAT
89205114 AT
1 AT
89205116 GATATTGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
21 2 0.05
22 13 0.33
23 14 0.36
24 3 0.08
25 5 0.13
26 2 0.05
ACGTcount: A:0.55, C:0.07, G:0.07, T:0.32
Consensus pattern (23 bp):
ATATACGTAATAATATTAAAGAT
Found at i:89205160 original size:2 final size:2
Alignment explanation
Indices: 89205155--89205183 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
89205145 TGAAAAAAGA
89205155 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
89205184 GTATTAGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:89206041 original size:10 final size:10
Alignment explanation
Indices: 89206014--89206044 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
89206004 GGTATATCTT
*
89206014 TTTTTTTATA
1 TTTTTTTGTA
89206024 TTTTTTTGTA
1 TTTTTTTGTA
89206034 TTTTTTTGTA
1 TTTTTTTGTA
89206044 T
1 T
89206045 GTATTTTATC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.13, C:0.00, G:0.06, T:0.81
Consensus pattern (10 bp):
TTTTTTTGTA
Found at i:89207440 original size:76 final size:75
Alignment explanation
Indices: 89207337--89207535 Score: 242
Period size: 76 Copynumber: 2.6 Consensus size: 75
89207327 ACTGCTTGAA
* * * *
89207337 CATGTCCCGAGGTTCAACTTACCTCTCGCAATATGAGTTGATTTTTTTGCA-AACAGAAGTTGAA
1 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAACAGAAATT-AA
89207401 AAT-ACCTCAG
65 AATCACCTCAG
*
89207411 CATG-CGAGCCGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAGAACAGAA
1 CATGTC---CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTTGAAGAACAGAA
*
89207475 ATTAAAATCATCTCAG
60 ATTAAAATCACCTCAG
**
89207491 CATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
89207536 GACAAACAGA
Statistics
Matches: 107, Mismatches: 9, Indels: 17
0.80 0.07 0.13
Matches are distributed among these distances:
73 1 0.01
74 4 0.04
75 4 0.04
76 32 0.30
78 32 0.30
79 14 0.13
80 19 0.18
81 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (75 bp):
CATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAGAACAGAAATTAAA
ATCACCTCAG
Found at i:89207522 original size:78 final size:77
Alignment explanation
Indices: 89207343--89207535 Score: 234
Period size: 78 Copynumber: 2.5 Consensus size: 77
89207333 TGAACATGTC
* * * *
89207343 CCGAGGTTCAACTTACCTCTCGCAATATGAGTTGA---TTTTTTTGCAAACAGAAGTTGAAAATA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
89207405 CCTCAGCATGCGAG
66 CCTCAGCATGC--G
*
89207419 CCGATGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAGAACAGAAATT-AAAAT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAA-AACAGAAATTGAAAAT
*
89207483 CATCTCAGCATGTC-
65 -ACCTCAGCATG-CG
**
89207497 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
89207536 GACAAACAGA
Statistics
Matches: 102, Mismatches: 9, Indels: 10
0.84 0.07 0.08
Matches are distributed among these distances:
76 32 0.31
78 36 0.35
79 14 0.14
80 19 0.19
81 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (77 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAACAGAAATTGAAAATA
CCTCAGCATGCG
Found at i:89207649 original size:14 final size:14
Alignment explanation
Indices: 89207626--89207655 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
89207616 TTGATTTTTG
*
89207626 AAACATAAATTGAA
1 AAACAGAAATTGAA
89207640 AAACAGAAATTGAA
1 AAACAGAAATTGAA
89207654 AA
1 AA
89207656 TACCTCAGCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (14 bp):
AAACAGAAATTGAA
Found at i:89207774 original size:174 final size:174
Alignment explanation
Indices: 89207387--89207899 Score: 665
Period size: 174 Copynumber: 3.0 Consensus size: 174
89207377 ATTTTTTTGC
* * * * *
89207387 AAACAGAAGTTGAAAATACCTCAGCATGCGAGCC-GATGCTCAACTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTTAACTCACCTCTCGCAATATGAGT
** * * * *
89207451 TGATTTTT------T-TTTTGAAGAACAGAAATT-AAAATCATCTCAGCATGT-CTTGAGGCTCA
65 TGATTTTTGAAACATAAATTGAAAAACAGAAATTGAAAAT-ACCTCAGCGTGTGCCTGAGGCTCA
89207507 ACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAACAGAAATTGAA
129 ACTCACCTCTCGCAATATGAGTTGATTTTTGA-AAACAGAAATTGAA
* * *
89207553 AAACAGAAACTAAAAATACCTCAGCGTGTGACCTGAGG-TTCAACTCACCTCTTGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTT-AACTCACCTCTCGCAATATGAGT
89207617 TGATTTTTGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGGCCTGAGGCTCA
65 TGATTTTTGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGT-GCCTGAGGCTCA
* * *
89207682 ACTCACCTCTCACAATATGAGTTGATTTTTG-AAACATAAGTTGAA
129 ACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
*
89207727 AAATAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
* * *
89207792 GATTTTTGAAACATAAATTAAAAAATAGAAATTTGAAAAATACCTCAGCGTGTGACCTGAAGCTC
66 GATTTTTGAAACATAAATTGAAAAACAGAAA-TTG-AAAATACCTCAGCGTGTG-CCTGAGGCTC
*
89207857 AACTCACCTCTCGCAATATGAGTTGATTTTTAAAAACAGAAAT
128 AACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAAT
89207900 AAAAATATCA
Statistics
Matches: 301, Mismatches: 28, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
165 3 0.01
166 59 0.20
172 1 0.00
173 25 0.08
174 104 0.35
175 40 0.13
176 61 0.20
177 8 0.03
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (174 bp):
AAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAACATAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTGCCTGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAA
Done.