Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 297 of 325
Found at i:90960220 original size:25 final size:26
Alignment explanation
Indices: 90960186--90960247 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 26
90960176 AATTTTACTT
90960186 CAGTAAAATTTTGACGACT-TATCCC
1 CAGTAAAATTTTGACGACTGTATCCC
* * *
90960211 CAGTAAAATTTTTACGATTGTATCCT
1 CAGTAAAATTTTGACGACTGTATCCC
*
90960237 CGGTAAAATTT
1 CAGTAAAATTT
90960248 CAAGAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
25 17 0.53
26 15 0.47
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (26 bp):
CAGTAAAATTTTGACGACTGTATCCC
Found at i:90962282 original size:26 final size:26
Alignment explanation
Indices: 90962246--90962355 Score: 179
Period size: 26 Copynumber: 4.2 Consensus size: 26
90962236 TGATACAAAT
90962246 TGATAATAGGTTAGGTAAATG-TTCAA
1 TGATAATAGGTTAGGTAAATGTTTC-A
90962272 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
90962298 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
90962324 TGATAAT-GAGTTAGGTAAATGTTTCA
1 TGATAATAG-GTTAGGTAAATGTTTCA
90962350 TGATAA
1 TGATAA
90962356 GAATTCCATG
Statistics
Matches: 81, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
25 1 0.01
26 77 0.95
27 3 0.04
ACGTcount: A:0.35, C:0.04, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:90964302 original size:137 final size:135
Alignment explanation
Indices: 90964124--90964408 Score: 534
Period size: 137 Copynumber: 2.1 Consensus size: 135
90964114 TTGAGTACTC
90964124 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
90964189 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAA--GGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
90964254 ACTGTTA
129 ACTGTTA
90964261 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
90964326 TGTTATCTGAATAAGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
66 TGTTATCTGAATAAGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
90964391 TGTTA
131 TGTTA
**
90964396 CCTGAATGGGCTT
1 CCCAAATGGGCTT
90964409 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
135 67 0.46
137 79 0.54
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:90968206 original size:26 final size:26
Alignment explanation
Indices: 90968144--90968251 Score: 184
Period size: 25 Copynumber: 4.2 Consensus size: 26
90968134 TGATACAAAT
90968144 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
90968169 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
90968195 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
90968221 TGATAAT-GGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
90968246 TGATAA
1 TGATAA
90968252 GAATTCATGT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 45 0.57
26 34 0.43
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:90968207 original size:51 final size:51
Alignment explanation
Indices: 90968144--90968251 Score: 182
Period size: 51 Copynumber: 2.1 Consensus size: 51
90968134 TGATACAAAT
90968144 TGATAATAGGTTAGGTAAATG-TTCATGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAAT-GGTTAGGTAAATGTTCCA
* *
90968195 TGATAATGGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTCCA
90968246 TGATAA
1 TGATAA
90968252 GAATTCATGT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
51 43 0.80
52 11 0.20
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (51 bp):
TGATAATAGGTTAGGTAAATGTTTCATGATAATGGTTAGGTAAATGTTCCA
Found at i:90973501 original size:36 final size:36
Alignment explanation
Indices: 90973457--90973530 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
90973447 TCTGAAAAGG
90973457 GCTCTGGCCCAGTACCACTATTACCCAAATGGGCTT
1 GCTCTGGCCCAGTACCACTATTACCCAAATGGGCTT
*
90973493 GCTCTGGCCCAGTACCACTGTTACCCAAATGGGCTT
1 GCTCTGGCCCAGTACCACTATTACCCAAATGGGCTT
90973529 GC
1 GC
90973531 ATATGTTTAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.20, C:0.34, G:0.22, T:0.24
Consensus pattern (36 bp):
GCTCTGGCCCAGTACCACTATTACCCAAATGGGCTT
Found at i:90980046 original size:44 final size:45
Alignment explanation
Indices: 90979958--90980046 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
90979948 AGAACAGAAA
*
90979958 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
90980004 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
90980047 ATAAGTCCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:90987378 original size:44 final size:45
Alignment explanation
Indices: 90987290--90987378 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 45
90987280 AGAACAGAAA
*
90987290 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAT
*
90987336 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGA
90987379 ATAAGTCCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 20 0.49
46 21 0.51
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAT
Found at i:90999825 original size:20 final size:20
Alignment explanation
Indices: 90999788--90999825 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
90999778 TGGGATAACT
*
90999788 GACTCATCATTTCCCTCTGG
1 GACTCATCATTTCACTCTGG
90999808 GACTCCATCATTT-ACTCT
1 GACT-CATCATTTCACTCT
90999826 TTTATCTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
GACTCATCATTTCACTCTGG
Found at i:91003663 original size:131 final size:131
Alignment explanation
Indices: 91003391--91003863 Score: 359
Period size: 131 Copynumber: 3.6 Consensus size: 131
91003381 GTGAAATTCC
* * * * *
91003391 GAAGGGATCTTCGATTATTTTGAATAAATGAGAAAGCGCAACCCAGCACGATAGGGC-TCGATTC
1 GAAGGGATATTCGATTATTTTGAACAAAAGAGAAATCGCAACCCAGCACGATTGGGCAT-GATTC
* * * *
91003455 TCAAATTGCCAAACATCGAACATCGCCTTCGTTTTGAAAGATTTTTAATAAACATGAATGAAAAC
65 CCGAATTGCCAAACACCGAACATCACCTTCGTTTTGAAAGATTTTTAATAAACATGAATGAAAAC
91003520 CT
130 CT
* * * * * *
91003522 AAAGGAATATTTGATTGTTTTGAACAAAAGAGAGATCACAACCCAGCACGATTGGGCATGATTCC
1 GAAGGGATATTCGATTATTTTGAACAAAAGAGAAATCGCAACCCAGCACGATTGGGCATGATTCC
* ** * * * *
91003587 CGAATTGTCAAACACCGAGTATTACCTTCGTTTT-AAATGATTTTTAGA-AGACATGAATGGAAT
66 CGAATTGCCAAACACCGAACATCACCTTCGTTTTGAAA-GATTTTTA-ATAAACATGAATGAAAA
**
91003650 TTT
129 CCT
* * * *
91003653 GAAGGGATATTCGATCATTTT-AAGCAAACGAGAAATTGCAACCCAGCACG-TTAGGGCACGATT
1 GAAGGGATATTCGATTATTTTGAA-CAAAAGAGAAATCGCAACCCAGCACGATT-GGGCATGATT
*** * * ** * * * *
91003716 CCTGCGAATTGCCAAATGTCAAACCTTGCCTTCGTTTT-AAAGAGTTCTTAA-AAGGCGTGAGTG
64 CC--CGAATTGCCAAACACCGAACATCACCTTCGTTTTGAAAGA-TTTTTAATAA-ACATGAATG
***
91003779 AAATTTT
125 AAAACCT
* * * * * *
91003786 GAAGGGATATTCGATTATTTTGAGCAAACGTGAAATTGCAACCCAACACG-TTAGGGCACGATTC
1 GAAGGGATATTCGATTATTTTGAACAAAAGAGAAATCGCAACCCAGCACGATT-GGGCATGATTC
91003850 CGCGAATTGCCAAA
65 C-CGAATTGCCAAA
91003864 TATCGGATCT
Statistics
Matches: 279, Mismatches: 53, Indels: 19
0.79 0.15 0.05
Matches are distributed among these distances:
130 7 0.03
131 148 0.53
132 19 0.07
133 104 0.37
134 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (131 bp):
GAAGGGATATTCGATTATTTTGAACAAAAGAGAAATCGCAACCCAGCACGATTGGGCATGATTCC
CGAATTGCCAAACACCGAACATCACCTTCGTTTTGAAAGATTTTTAATAAACATGAATGAAAACC
T
Found at i:91003787 original size:133 final size:132
Alignment explanation
Indices: 91003611--91003864 Score: 393
Period size: 133 Copynumber: 1.9 Consensus size: 132
91003601 CCGAGTATTA
* * *
91003611 CCTTCGTTTTAAATGATTTTTAGAAGACATGAATGGAATTTTGAAGGGATATTCGATCATTTTAA
1 CCTTCGTTTTAAATGATTCTTAAAAGACATGAATGAAATTTTGAAGGGATATTCGATCATTTTAA
*
91003676 GCAAACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCTGCGAATTGCCAAATGTCAAACC
66 GCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCC-GCGAATTGCCAAATGTCAAACC
91003741 TTG
130 TTG
* * * * *
91003744 CCTTCGTTTTAAA-GAGTTCTTAAAAGGCGTGAGTGAAATTTTGAAGGGATATTCGATTATTTTG
1 CCTTCGTTTTAAATGA-TTCTTAAAAGACATGAATGAAATTTTGAAGGGATATTCGATCATTTTA
*
91003808 AGCAAACGTGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAAT
65 AGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAAT
91003865 ATCGGATCTC
Statistics
Matches: 110, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
132 16 0.15
133 94 0.85
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (132 bp):
CCTTCGTTTTAAATGATTCTTAAAAGACATGAATGAAATTTTGAAGGGATATTCGATCATTTTAA
GCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATGTCAAACCT
TG
Found at i:91008714 original size:39 final size:39
Alignment explanation
Indices: 91008619--91008726 Score: 110
Period size: 40 Copynumber: 2.7 Consensus size: 39
91008609 CCTTTGGTGG
*
91008619 CTTTAGTGGCGCTTTTTTAAAAACGCCACTATATGTACAC
1 CTTTAGTGGCGC-TTTTTAAAAACGCCGCTATATGTACAC
* * ** *
91008659 CTTTAGCGACGCTTTTTAGAAAACGCCGCTA-ATGCTTGAT
1 CTTTAGTGGCGCTTTTTA-AAAACGCCGCTATATG-TACAC
* *
91008699 CTTTAGTGGCGTTTTTTTAAAACGCCGC
1 CTTTAGTGGCGCTTTTTAAAAACGCCGC
91008727 AAAATAATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
39 19 0.34
40 37 0.66
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (39 bp):
CTTTAGTGGCGCTTTTTAAAAACGCCGCTATATGTACAC
Found at i:91008871 original size:156 final size:155
Alignment explanation
Indices: 91008597--91008877 Score: 391
Period size: 157 Copynumber: 1.8 Consensus size: 155
91008587 AGCGCTGCAG
* * * * * *
91008597 TTTTGTATTGAGCCTTTGGTGGCTTTAGTGGCGCTTTTTTAAAAACGCCACTATATGTACACCTT
1 TTTTGTACTGAGACTTTAGTGGCTTTAGCGGCGCTTTTTTAAAAACACCACTATAAGTACACCTT
* * * *
91008662 TAGCGACGCTTTTTAGAAAACGCCGCTAATGCTTGATCTTTAGTGGCGTTTTTTTAAAACGCCGC
66 TAGCGACGCTTTTTAAAAAACGCCGCTAATGCTCGATCTTTAGCGACGTTTTTTTAAAACGCCGC
91008727 AAAATAATTTTGTAAAACACCATCA
131 AAAATAATTTTGTAAAACACCATCA
* **
91008752 TTTTGTACTGAGATTTTAGTGGCTTTAGCGGCGCTTTTTTAAGAAACACTGCTATAAGTACACCT
1 TTTTGTACTGAGACTTTAGTGGCTTTAGCGGCGCTTTTTTAA-AAACACCACTATAAGTACACCT
** * *
91008817 TTAGCGGTGCTTTTTAAAAAAACGTCGCTAATGCTCGATCTTTAGCGACGTTTTTTAAAAA
65 TTAGCGACGCTTTTT-AAAAAACGCCGCTAATGCTCGATCTTTAGCGACGTTTTTTTAAAA
91008878 ATGCCACAAA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
155 37 0.35
156 31 0.29
157 39 0.36
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.37
Consensus pattern (155 bp):
TTTTGTACTGAGACTTTAGTGGCTTTAGCGGCGCTTTTTTAAAAACACCACTATAAGTACACCTT
TAGCGACGCTTTTTAAAAAACGCCGCTAATGCTCGATCTTTAGCGACGTTTTTTTAAAACGCCGC
AAAATAATTTTGTAAAACACCATCA
Found at i:91009078 original size:15 final size:15
Alignment explanation
Indices: 91009058--91009105 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
91009048 ACTATTGTAA
91009058 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
91009073 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
91009087 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
91009102 GGTT
1 GGTT
91009106 AAGGGTTAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:91009090 original size:29 final size:28
Alignment explanation
Indices: 91009058--91009120 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
91009048 ACTATTGTAA
* *
91009058 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTATGGGTTAAGGG-TTAG
*
91009087 GGTTTATGGTTTATGGGTTAAGGGTTAG
1 GGTTTATGGATTATGGGTTAAGGGTTAG
91009115 GGTTTA
1 GGTTTA
91009121 AGTTTTAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (28 bp):
GGTTTATGGATTATGGGTTAAGGGTTAG
Found at i:91009092 original size:14 final size:15
Alignment explanation
Indices: 91009058--91009120 Score: 69
Period size: 15 Copynumber: 4.4 Consensus size: 15
91009048 ACTATTGTAA
*
91009058 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
91009073 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
* *
91009087 GGTTTATGGTTTATG
1 GGTTTAGGGATTATG
*
91009102 GGTTAAGGG-TTA-G
1 GGTTTAGGGATTATG
91009115 GGTTTA
1 GGTTTA
91009121 AGTTTTAAGG
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
13 6 0.15
14 15 0.37
15 20 0.49
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:91009112 original size:15 final size:15
Alignment explanation
Indices: 91009068--91009174 Score: 53
Period size: 15 Copynumber: 7.3 Consensus size: 15
91009058 GGTTTATGGA
* *
91009068 TTATGGGTTTAGGGA
1 TTATGGGTTAAGGGT
* *
91009083 TTAT-GGTTTATGGT
1 TTATGGGTTAAGGGT
91009097 TTATGGGTTAAGGG-
1 TTATGGGTTAAGGGT
*
91009111 TTA-GGGTTTAA-GTT
1 TTATGGG-TTAAGGGT
* *
91009125 TTAAGGGGTT-GGGGT
1 TT-ATGGGTTAAGGGT
* ** *
91009140 TTAAGTTTTAAGGGA
1 TTATGGGTTAAGGGT
*
91009155 TTAAGGGTTAAGGGT
1 TTATGGGTTAAGGGT
91009170 TTATG
1 TTATG
91009175 TTTTATAGTT
Statistics
Matches: 69, Mismatches: 16, Indels: 14
0.70 0.16 0.14
Matches are distributed among these distances:
13 4 0.06
14 25 0.36
15 37 0.54
16 3 0.04
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.42
Consensus pattern (15 bp):
TTATGGGTTAAGGGT
Found at i:91009133 original size:22 final size:22
Alignment explanation
Indices: 91009104--91009163 Score: 86
Period size: 22 Copynumber: 2.7 Consensus size: 22
91009094 GGTTTATGGG
91009104 TTAA-GGGTTAGGGTTTAAGTT
1 TTAAGGGGTTAGGGTTTAAGTT
*
91009125 TTAAGGGGTTGGGGTTTAAGTT
1 TTAAGGGGTTAGGGTTTAAGTT
*
91009147 TTAAGGGATTAAGGGTT
1 TTAAGGGGTT-AGGGTT
91009164 AAGGGTTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 4 0.12
22 25 0.74
23 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (22 bp):
TTAAGGGGTTAGGGTTTAAGTT
Found at i:91009187 original size:29 final size:28
Alignment explanation
Indices: 91009072--91009199 Score: 80
Period size: 29 Copynumber: 4.4 Consensus size: 28
91009062 TATGGATTAT
* * * *
91009072 GGGTTTAGGGATTATGGTTTATGGTTTAT
1 GGGTTAAGGGTTTATGGTTTA-AGTTTAA
*
91009101 GGGTTAAGGG-TTAGGGTTTAAGTTTTAA
1 GGGTTAAGGGTTTATGGTTTAAG-TTTAA
* * * *
91009129 GGGGTT-GGGGTTTAAGTTTTAAGGGATTAA
1 -GGGTTAAGGGTTTATGGTTTAA--GTTTAA
*
91009159 GGGTTAAGGGTTTATGTTTTATAGTTTAA
1 GGGTTAAGGGTTTATGGTTTA-AGTTTAA
* *
91009188 GGTTTAGGGGTT
1 GGGTTAAGGGTT
91009200 AGAGGTTAGA
Statistics
Matches: 79, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
27 1 0.01
28 16 0.20
29 43 0.54
30 17 0.22
31 2 0.03
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (28 bp):
GGGTTAAGGGTTTATGGTTTAAGTTTAA
Found at i:91009229 original size:7 final size:7
Alignment explanation
Indices: 91009058--91009230 Score: 73
Period size: 7 Copynumber: 24.0 Consensus size: 7
91009048 ACTATTGTAA
*
91009058 GGTTTAT
1 GGTTTAG
*
91009065 GGATTATG
1 GGTTTA-G
91009073 GGTTTAG
1 GGTTTAG
* *
91009080 GGATTAT
1 GGTTTAG
*
91009087 GGTTTAT
1 GGTTTAG
91009094 GGTTTATG
1 GGTTTA-G
*
91009102 GGTTAAG
1 GGTTTAG
91009109 GG-TTAG
1 GGTTTAG
*
91009115 GGTTTAA
1 GGTTTAG
*
91009122 GTTTTAAG
1 GGTTT-AG
* *
91009130 GGGTTGG
1 GGTTTAG
*
91009137 GGTTTAA
1 GGTTTAG
*
91009144 GTTTTAAG
1 GGTTT-AG
*
91009152 GGATTAAG
1 GG-TTTAG
*
91009160 GGTTAAG
1 GGTTTAG
*
91009167 GGTTTAT
1 GGTTTAG
* *
91009174 GTTTTAT
1 GGTTTAG
* *
91009181 AGTTTAA
1 GGTTTAG
91009188 GGTTTAG
1 GGTTTAG
*
91009195 GGGTTAG
1 GGTTTAG
91009202 AGG-TTAG
1 -GGTTTAG
91009209 AGG-TTAG
1 -GGTTTAG
91009216 GGATTTAG
1 GG-TTTAG
91009224 GGTTTAG
1 GGTTTAG
91009231 ATTAATTAGT
Statistics
Matches: 126, Mismatches: 31, Indels: 18
0.72 0.18 0.10
Matches are distributed among these distances:
6 7 0.06
7 89 0.71
8 28 0.22
9 2 0.02
ACGTcount: A:0.22, C:0.00, G:0.36, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:91016150 original size:43 final size:43
Alignment explanation
Indices: 91016044--91016196 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 43
91016034 TAAATTTTTA
* * ** * *
91016044 AAAGGTAATGATTTTTAGTGGCATTTTTGGGAAAAGCGCCGCT
1 AAAGGTCATGACTTTTAACGGCGTTTGTGGGAAAAGCGCCGCT
**
91016087 -AA-GTCATGTTTTTTAACGGCGTTTGTGGGAAAAGCGCCGCT
1 AAAGGTCATGACTTTTAACGGCGTTTGTGGGAAAAGCGCCGCT
* * * * *
91016128 AAAGGTCATGACCTTTAACGGCGTTTTTGGTAAAAACGCTGCT
1 AAAGGTCATGACTTTTAACGGCGTTTGTGGGAAAAGCGCCGCT
* * *
91016171 AAAGATCATGACTTTTAGCAGCGTTT
1 AAAGGTCATGACTTTTAACGGCGTTT
91016197 TTTTCATAAA
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
41 33 0.36
42 4 0.04
43 54 0.59
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
AAAGGTCATGACTTTTAACGGCGTTTGTGGGAAAAGCGCCGCT
Found at i:91019672 original size:19 final size:19
Alignment explanation
Indices: 91019650--91019688 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
91019640 ATCTATTTTA
91019650 GCTCTAATACATTAAAGGG
1 GCTCTAATACATTAAAGGG
91019669 GCTCTAATACATTAAAGGG
1 GCTCTAATACATTAAAGGG
91019688 G
1 G
91019689 GAGAGACAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (19 bp):
GCTCTAATACATTAAAGGG
Found at i:91021811 original size:9 final size:9
Alignment explanation
Indices: 91021797--91021864 Score: 75
Period size: 9 Copynumber: 7.6 Consensus size: 9
91021787 ATAAGTATAA
91021797 AATTAACCG
1 AATTAACCG
91021806 AATTAACCG
1 AATTAACCG
*
91021815 AATTAATCG
1 AATTAACCG
*
91021824 AATTACCCG
1 AATTAACCG
**
91021833 AATT-ACTTA
1 AATTAAC-CG
*
91021842 AATTAATCG
1 AATTAACCG
91021851 AATTAACCG
1 AATTAACCG
91021860 AATTA
1 AATTA
91021865 TTTGTATAAA
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
8 1 0.02
9 45 0.96
10 1 0.02
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTAACCG
Found at i:91021895 original size:6 final size:6
Alignment explanation
Indices: 91021884--91021930 Score: 58
Period size: 6 Copynumber: 7.5 Consensus size: 6
91021874 AATTATATGT
* *
91021884 TTTTTA TTTTTA GTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
91021931 ATTAAATTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
6 26 0.74
7 8 0.23
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:91021902 original size:12 final size:12
Alignment explanation
Indices: 91021885--91021930 Score: 65
Period size: 12 Copynumber: 3.7 Consensus size: 12
91021875 ATTATATGTT
91021885 TTTTATTTTTAG
1 TTTTATTTTTAG
91021897 TTTTATTTTTAG
1 TTTTATTTTTAG
*
91021909 TTTTAGATTTTTAT
1 TTTT--ATTTTTAG
91021923 TTTTATTT
1 TTTTATTT
91021931 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
12 20 0.65
14 11 0.35
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (12 bp):
TTTTATTTTTAG
Found at i:91048295 original size:21 final size:21
Alignment explanation
Indices: 91048269--91048314 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
91048259 TCGATCCTGT
* *
91048269 TCCTCATAAATAAAGTTTAAA
1 TCCTCATAAACAAAATTTAAA
91048290 TCCTCATAAACAAAATTTAAA
1 TCCTCATAAACAAAATTTAAA
91048311 TCCT
1 TCCT
91048315 TATAGATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.33
Consensus pattern (21 bp):
TCCTCATAAACAAAATTTAAA
Found at i:91049186 original size:93 final size:90
Alignment explanation
Indices: 91049011--91049198 Score: 241
Period size: 92 Copynumber: 2.1 Consensus size: 90
91049001 TAGATTAAAG
* * * * * * **
91049011 TGAAAATATCTACAAAAGAAACAACTATTAAAAATCAAAATAGATAAGAAGCAAATAATGAGGGG
1 TGAAAATATCAACAAAAAAAAAAACTATCAAAAATCAAAATAAATAAGAAGAAAATAAACAGGGG
*
91049076 AAGAAAGCAAGAGGCCATTATCATA
66 AAGAAAGCAAGAAGCCATTATCATA
* **
91049101 TGAAAATATCAACAAAAAAAAAAAAACTATCAAACATCAGTATAAATAAGAAGAAAATAAACATG
1 TGAAAATATCAAC--AAAAAAAAAAACTATCAAAAATCAAAATAAATAAGAAGAAAATAAACA-G
91049166 GGGAAGAAAGCAAGAAGCCATTATCATA
63 GGGAAGAAAGCAAGAAGCCATTATCATA
91049194 TGAAA
1 TGAAA
91049199 CTCAATTTCA
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
90 12 0.14
92 38 0.46
93 33 0.40
ACGTcount: A:0.57, C:0.11, G:0.15, T:0.17
Consensus pattern (90 bp):
TGAAAATATCAACAAAAAAAAAAACTATCAAAAATCAAAATAAATAAGAAGAAAATAAACAGGGG
AAGAAAGCAAGAAGCCATTATCATA
Found at i:91057233 original size:37 final size:38
Alignment explanation
Indices: 91057131--91057241 Score: 118
Period size: 37 Copynumber: 2.9 Consensus size: 38
91057121 TAGCCAGCTT
* **
91057131 TAAAAATGACAGTCGCGATATTAAATCAAGTTAACTCT
1 TAAAAATGACAGTCGCGATATTAAATCAAGTGAACTAG
* * * *
91057169 TAGAAAATTGA-AGGTTGCAATCTTAAATAAAGTGAAC-AG
1 TA-AAAA-TGACA-GTCGCGATATTAAATCAAGTGAACTAG
91057208 TAAAAATGACAGTCGCGATATTAAATCAAGTGAA
1 TAAAAATGACAGTCGCGATATTAAATCAAGTGAA
91057242 TTGTTAAAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
37 22 0.38
38 7 0.12
39 7 0.12
40 22 0.38
ACGTcount: A:0.45, C:0.12, G:0.17, T:0.26
Consensus pattern (38 bp):
TAAAAATGACAGTCGCGATATTAAATCAAGTGAACTAG
Found at i:91060723 original size:22 final size:22
Alignment explanation
Indices: 91060695--91060741 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
91060685 TTGGAGTTCG
* *
91060695 CAGAGAATGTTAGTATTAGGGA
1 CAGAGAATGTCAGTATTAGAGA
91060717 CAGAGAATGTCAGTATTAGAGA
1 CAGAGAATGTCAGTATTAGAGA
91060739 CAG
1 CAG
91060742 CAAACCTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.38, C:0.09, G:0.30, T:0.23
Consensus pattern (22 bp):
CAGAGAATGTCAGTATTAGAGA
Found at i:91066101 original size:68 final size:68
Alignment explanation
Indices: 91066024--91066154 Score: 163
Period size: 68 Copynumber: 1.9 Consensus size: 68
91066014 CAGGTCAACA
* *
91066024 AGTTGTTAGGAATTACGATCTTAAATCAACTAACTTAAATAATCAGAAGTTGTAATCTTAAATTA
1 AGTTGTTAGGAATTACGATCTTAAATCAACGAACTCAAATAATCAGAAGTTGTAATCTTAAATTA
91066089 GCG
66 GCG
* * * ** ** * *
91066092 AGTTGTTAGGAGTTGCGTTCTTAAATCGGCGAACTCAAATAATTGGAGGTTGTGATCTTAAAT
1 AGTTGTTAGGAATTACGATCTTAAATCAACGAACTCAAATAATCAGAAGTTGTAATCTTAAAT
91066155 CAACGAGCCT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
68 52 1.00
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (68 bp):
AGTTGTTAGGAATTACGATCTTAAATCAACGAACTCAAATAATCAGAAGTTGTAATCTTAAATTA
GCG
Found at i:91066430 original size:107 final size:104
Alignment explanation
Indices: 91066313--91066593 Score: 303
Period size: 104 Copynumber: 2.7 Consensus size: 104
91066303 TATTTCGGAA
* * * * * * *
91066313 TTGCGAGCTTAACTCAACTAACTTAAATAGTTTGGAGGTTGTGAGTTTTAACTCAACTAACCTTT
1 TTGCGAGCTTAACTCAACTAACTCAAATAATCTAGAGGCTATGAG-CTTAACTCAACTAACCTTT
* * * * *
91066378 AAACATTAGCTGGGAATGTAGGTCCACGAGCTCTTTCAAAG
65 AAACATGAGCTGAGAATGCAAGT-CACGAACTCTTTCAAAG
*
91066419 TTTGCGAGCTTAACTCAACTAACTCGAATAATCTAGAGGCTATGAGCTTAACTCAACTAACCTTT
1 -TTGCGAGCTTAACTCAACTAACTCAAATAATCTAGAGGCTATGAGCTTAACTCAACTAACCTTT
* * *
91066484 AAACATGAGCTGAGAATGCAAGTCTCGAACTGTTTCGAAG
65 AAACATGAGCTGAGAATGCAAGTCACGAACTCTTTCAAAG
* * * ** * * *
91066524 TTGCGAGCTTAACT-AAGCTAACTCGAATAATCTGGAGACTGCGAGCTTAACTTAGCTAACCCTT
1 TTGCGAGCTTAACTCAA-CTAACTCAAATAATCTAGAGGCTATGAGCTTAACTCAACTAACCTTT
91066588 AAACAT
65 AAACAT
91066594 CAACTGGGAA
Statistics
Matches: 150, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
103 2 0.01
104 60 0.40
105 13 0.09
106 37 0.25
107 38 0.25
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (104 bp):
TTGCGAGCTTAACTCAACTAACTCAAATAATCTAGAGGCTATGAGCTTAACTCAACTAACCTTTA
AACATGAGCTGAGAATGCAAGTCACGAACTCTTTCAAAG
Found at i:91066885 original size:105 final size:105
Alignment explanation
Indices: 91066687--91066903 Score: 263
Period size: 105 Copynumber: 2.1 Consensus size: 105
91066677 CCTTAGTAGA
* * * * * * *
91066687 ATCAACTGGGAACATAAGTTTGCGAGTTGTTTCAAAGTTGCCAGCTTAACTCAGCTAACTCGAAT
1 ATCAGCTGGAAACATAAGTTTGCAAGTTGTTTCAAAGTTACAAGCTTAACTAAACTAACTCGAAT
* * *
91066752 AATTTGAAGGCTACGAGCTTAACTCAACTAACCTTTAAAT
66 AATTTGAAGGCTACGAACTTAACGCAACTAACCTTTAAAC
* *** *
91066792 ATCAGCTGGAAACGTAAGTTTGCAAGTTGTTTTGGAGTTACAAGCTTAACTAAATTAACTCGAAT
1 ATCAGCTGGAAACATAAGTTTGCAAGTTGTTTCAAAGTTACAAGCTTAACTAAACTAACTCGAAT
* * **
91066857 AATTTGGAGGTTGTGAACTTAACGCAACTAACCTTTAAAC
66 AATTTGAAGGCTACGAACTTAACGCAACTAACCTTTAAAC
91066897 ATCAGCT
1 ATCAGCT
91066904 AAGAACATAA
Statistics
Matches: 93, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
105 93 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (105 bp):
ATCAGCTGGAAACATAAGTTTGCAAGTTGTTTCAAAGTTACAAGCTTAACTAAACTAACTCGAAT
AATTTGAAGGCTACGAACTTAACGCAACTAACCTTTAAAC
Found at i:91066945 original size:105 final size:103
Alignment explanation
Indices: 91066696--91066964 Score: 261
Period size: 105 Copynumber: 2.6 Consensus size: 103
91066686 AATCAACTGG
* * *
91066696 GAACATAAGTTTGCGAGTTGTTTC-AAAGTTGCCAGCTTAACTCAGCTAACTCGAATAATTTGAA
1 GAACATAAGTTTGCGAGTTGTTTCGAAA-TTG-CAACTTAACTAAACTAACTCGAATAATTTGAA
* * * *
91066760 GGCTACGAGCTTAACTCAACTAACCTTTAAATATCAGCTG
64 GGCTACGAACTTAACGCAACTAACCTTTAAACATCAGCTA
* * * * * * * *
91066800 GAAACGTAAGTTTGCAAGTTGTTTTGGAGTTACAAGCTTAACTAAATTAACTCGAATAATTTGGA
1 G-AACATAAGTTTGCGAGTTGTTTCGAAATTGCAA-CTTAACTAAACTAACTCGAATAATTTGAA
* **
91066865 GGTTGTGAACTTAACGCAACTAACCTTTAAACATCAGCTAA
64 GGCTACGAACTTAACGCAACTAACCTTTAAACATCAGCT-A
* * * ** *
91066906 GAACATAAGTCTGTGAGCTGTTTCGAAATTGCGAACTTAACTTTACTAACTAGAATAAT
1 GAACATAAGTTTGCGAGTTGTTTCGAAATTGC-AACTTAACTAAACTAACTCGAATAAT
91066965 CTAGAGATCG
Statistics
Matches: 129, Mismatches: 31, Indels: 9
0.76 0.18 0.05
Matches are distributed among these distances:
104 3 0.02
105 122 0.95
106 4 0.03
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (103 bp):
GAACATAAGTTTGCGAGTTGTTTCGAAATTGCAACTTAACTAAACTAACTCGAATAATTTGAAGG
CTACGAACTTAACGCAACTAACCTTTAAACATCAGCTA
Found at i:91076400 original size:28 final size:28
Alignment explanation
Indices: 91076339--91076400 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
91076329 TCAGTGTACG
*
91076339 AAATATTGAGAAGGACACTTAATGTGCG
1 AAATATTGAGAAGGACACTTAATGTGCA
* * *
91076367 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAAGGACACTTAATGTGCA
91076395 AAATAT
1 AAATAT
91076401 CGAATGATTC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.10, G:0.23, T:0.27
Consensus pattern (28 bp):
AAATATTGAGAAGGACACTTAATGTGCA
Found at i:91080707 original size:33 final size:33
Alignment explanation
Indices: 91080670--91080737 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
91080660 GGTAGCATGG
91080670 TTCAAATATTAATATTTGTAAATTATTTATTTA
1 TTCAAATATTAATATTTGTAAATTATTTATTTA
91080703 TTCAAATATTAATATTTGTAAATTATTTATTTA
1 TTCAAATATTAATATTTGTAAATTATTTATTTA
91080736 TT
1 TT
91080738 TTTTAAATAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (33 bp):
TTCAAATATTAATATTTGTAAATTATTTATTTA
Found at i:91080725 original size:16 final size:16
Alignment explanation
Indices: 91080673--91080725 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
91080663 AGCATGGTTC
91080673 AAATATTAATATTTGT
1 AAATATTAATATTTGT
*
91080689 AAATTATT--TATTTATT
1 AAA-TATTAATATTT-GT
91080705 CAAATATTAATATTTGT
1 -AAATATTAATATTTGT
91080722 AAAT
1 AAAT
91080726 TATTTATTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 5 0.17
16 12 0.40
17 8 0.27
18 5 0.17
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (16 bp):
AAATATTAATATTTGT
Found at i:91082545 original size:13 final size:13
Alignment explanation
Indices: 91082527--91082556 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
91082517 TGATCGACTA
91082527 TTATAATAAATTT
1 TTATAATAAATTT
91082540 TTATAATAAATTT
1 TTATAATAAATTT
91082553 TTAT
1 TTAT
91082557 TCTCATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATAATAAATTT
Found at i:91085507 original size:24 final size:24
Alignment explanation
Indices: 91085475--91085521 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
91085465 GGTTTCAGGA
91085475 TTTGGCTAAATTCAATATTGCTCT
1 TTTGGCTAAATTCAATATTGCTCT
91085499 TTTGGCTAAATTCAATATTGCTC
1 TTTGGCTAAATTCAATATTGCTC
91085522 GTCTAATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.45
Consensus pattern (24 bp):
TTTGGCTAAATTCAATATTGCTCT
Found at i:91087720 original size:11 final size:11
Alignment explanation
Indices: 91087704--91087729 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91087694 GATCTGTAAA
91087704 AAAATAAAAAT
1 AAAATAAAAAT
91087715 AAAATAAAAAT
1 AAAATAAAAAT
91087726 AAAA
1 AAAA
91087730 AACAAACAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:91092728 original size:23 final size:23
Alignment explanation
Indices: 91092702--91092794 Score: 71
Period size: 23 Copynumber: 3.8 Consensus size: 23
91092692 GATGGATTAT
91092702 ATTATTTTGGTGTGTTTGGGAGG
1 ATTATTTTGGTGTGTTTGGGAGG
*
91092725 ATTATATGATACTGGTGTGTTTTGGAGG
1 ATTAT-T--T--TGGTGTGTTTGGGAGG
** **
91092753 ATTATACTGGTGTGTTTTGGTTGG
1 ATTATTTTGGTGTG-TTTGGGAGG
*
91092777 A-CATTTTGGTGTGTTTGG
1 ATTATTTTGGTGTGTTTGG
91092795 ATGGAATCCG
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
22 5 0.09
23 21 0.38
24 8 0.15
26 1 0.02
28 20 0.36
ACGTcount: A:0.15, C:0.03, G:0.34, T:0.47
Consensus pattern (23 bp):
ATTATTTTGGTGTGTTTGGGAGG
Found at i:91092728 original size:28 final size:28
Alignment explanation
Indices: 91092675--91092758 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
91092665 CACTTTGTGC
91092675 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
* *
91092704 TATTTTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
91092732 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
91092759 CTGGTGTGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
28 32 0.65
29 17 0.35
ACGTcount: A:0.19, C:0.02, G:0.31, T:0.48
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:91093023 original size:20 final size:21
Alignment explanation
Indices: 91092963--91093025 Score: 65
Period size: 23 Copynumber: 3.0 Consensus size: 21
91092953 ACTATACTGA
* *
91092963 TCAGGTACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCG--TT
* *
91092986 TTAGGCACCTTGTGTGTCGTT
1 TCAGGCACCTTATGTGTCGTT
91093007 TCAGGCA-CTTATGTGTCGT
1 TCAGGCACCTTATGTGTCGT
91093026 ATACTGATCA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 11 0.32
21 8 0.24
23 15 0.44
ACGTcount: A:0.14, C:0.17, G:0.25, T:0.43
Consensus pattern (21 bp):
TCAGGCACCTTATGTGTCGTT
Found at i:91094266 original size:46 final size:48
Alignment explanation
Indices: 91094108--91094276 Score: 161
Period size: 46 Copynumber: 3.5 Consensus size: 48
91094098 TGGTTGGACC
91094108 ATGGCATCA-A-TGTGATATGTGA-TCTGTGTAAGACCATAGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTC-GTGTAAGACCATAGCTGGGCT
* * * * *
91094154 ATGGCATCAGAGATATGTGATTACGTGCTTCCGTATAAGACCATATCTGGGAT
1 ATGGCATCAGAG---TGTGA-TATGTGATT-CGTGTAAGACCATAGCTGGGCT
*
91094207 ATGGCATC--AGTGTGATATGTGATTCGTGTAAGACCATGGCTGGGCT
1 ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
* *
91094253 ATGGC-TACGGTGTGTGATATGTGA
1 ATGGCAT-CAGAGTGTGATATGTGA
91094277 CTATGTACAA
Statistics
Matches: 100, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
45 1 0.01
46 33 0.33
47 8 0.08
48 18 0.18
51 7 0.07
52 5 0.05
53 27 0.27
54 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.31
Consensus pattern (48 bp):
ATGGCATCAGAGTGTGATATGTGATTCGTGTAAGACCATAGCTGGGCT
Found at i:91102067 original size:37 final size:37
Alignment explanation
Indices: 91102014--91102134 Score: 208
Period size: 37 Copynumber: 3.3 Consensus size: 37
91102004 TATAAAAGAA
*
91102014 GTCTTACCCGGACATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
91102051 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
91102088 GTCTTACCTGGTCATAATCTCCACACGTAGTCATC-G
1 GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
*
91102124 GTCTCACCCGG
1 GTCTTACCCGG
91102135 AACATATTCC
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
36 10 0.12
37 70 0.88
ACGTcount: A:0.21, C:0.33, G:0.19, T:0.26
Consensus pattern (37 bp):
GTCTTACCCGGTCATAATCTCCACACGTAGTCATCGG
Found at i:91102289 original size:49 final size:49
Alignment explanation
Indices: 91102235--91102550 Score: 546
Period size: 49 Copynumber: 6.5 Consensus size: 49
91102225 TTTTGCATTA
*
91102235 GCCATTAGGCCTTATCACATGTACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* ** *
91102284 GCCATTAGGCCTTATCACATATATACCCACTTTCACATTCATCATATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
* *
91102333 GCCATTAGGCCTTATCACATAAACATACACTTCCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
91102382 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
91102431 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
91102480 GCCATTAGGCCTTATCACATAT--ATACCACTTTCACATTCATCACATCG
1 GCCATTAGGCCTTATCACATATACATA-CACTTTCACATTCATCACATCG
91102528 GCCATTAGGCCTTATCACATATA
1 GCCATTAGGCCTTATCACATATA
91102551 TATGTATATC
Statistics
Matches: 252, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 3 0.01
48 44 0.17
49 205 0.81
ACGTcount: A:0.30, C:0.31, G:0.09, T:0.30
Consensus pattern (49 bp):
GCCATTAGGCCTTATCACATATACATACACTTTCACATTCATCACATCG
Found at i:91118505 original size:14 final size:13
Alignment explanation
Indices: 91118477--91118525 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 13
91118467 ATCATCAAGG
*
91118477 TTTTATTATTATTA
1 TTTT-TTATTTTTA
91118491 TTATTTTATTTTTA
1 TT-TTTTATTTTTA
91118505 TTTTTTTTATTTTTA
1 --TTTTTTATTTTTA
91118520 TTTTTT
1 TTTTTT
91118526 TGCATTGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 6 0.19
14 10 0.32
15 13 0.42
16 2 0.06
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:91118522 original size:6 final size:6
Alignment explanation
Indices: 91118477--91118524 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
91118467 ATCATCAAGG
* *
91118477 TTTTAT TATTAT TATTA- TTTTAT TTTTA- -TTT-T TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
91118521 TTTT
1 TTTT
91118525 TTGCATTGTT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
4 3 0.08
5 7 0.19
6 26 0.72
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:91118526 original size:14 final size:14
Alignment explanation
Indices: 91118477--91118526 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
91118467 ATCATCAAGG
* *
91118477 TTTTATTATTATTA
1 TTTTTTTATTTTTA
*
91118491 TTATTTTATTTTTA
1 TTTTTTTATTTTTA
91118505 TTTTTTTTATTTTTA
1 -TTTTTTTATTTTTA
91118520 TTTTTTT
1 TTTTTTT
91118527 GCATTGTTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
14 18 0.58
15 13 0.42
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTTTATTTTTA
Found at i:91132680 original size:44 final size:43
Alignment explanation
Indices: 91132632--91132731 Score: 105
Period size: 44 Copynumber: 2.3 Consensus size: 43
91132622 AGATTAAACT
*
91132632 GAAGT-AATAGTAACAGTACAACAC-ACAAGGTGTCTCATCGACTC
1 GAAGTCAA-AGTAACAGTACAACACTAC-A-GTGCCTCATCGACTC
* *
91132676 GAAGTCGAAGTAACAGTACGACACTTACAGTGCCTCATCGACTC
1 GAAGTCAAAGTAACAGTACAACAC-TACAGTGCCTCATCGACTC
* *
91132720 AAAGTCGAAGTA
1 GAAGTCAAAGTA
91132732 TCCCTGAACA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
44 45 0.92
45 2 0.04
46 2 0.04
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (43 bp):
GAAGTCAAAGTAACAGTACAACACTACAGTGCCTCATCGACTC
Found at i:91133800 original size:13 final size:13
Alignment explanation
Indices: 91133772--91133812 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
91133762 AATATTAGGA
91133772 ATAATAA-TT-AT
1 ATAATAATTTAAT
91133783 AATAATAATTTAAT
1 -ATAATAATTTAAT
91133797 ATAATAATTTAA-
1 ATAATAATTTAAT
91133809 ATAA
1 ATAA
91133813 ATATCTATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 11 0.41
13 14 0.52
14 2 0.07
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
ATAATAATTTAAT
Found at i:91133921 original size:156 final size:157
Alignment explanation
Indices: 91133631--91133922 Score: 345
Period size: 157 Copynumber: 1.9 Consensus size: 157
91133621 TTTATTAATT
* * *
91133631 TAATATAATAATAATAGTTAAAATAAATATCTATTTAATATCAAATACATGTATTACAATTGTAT
1 TAATATAATAATAATAATTAAAATAAATATCTATTTAATATCAAATACAAGTATTACAAATGTAT
* *** * *
91133696 ACATACATATTATTACACATGTATTTTATCATCACCCTACATTTGTCATAATTTAATTTATTTGA
66 ACATACATATTAATACACATGTATCAAATCATCACCATACATTTGTCATAATTTAATTTATTTCA
91133761 TAATATTAGGAATAATAATTATAATAA
131 TAATATTAGGAATAATAATTATAATAA
* * * * *
91133788 TAATTTAAT-ATAATAATTTAAATAAATATCTATTTAATAATTAATTATAAGTATTACAAATGTA
1 TAATATAATAATAATAATTAAAATAAATATCTATTTAAT-ATCAAATACAAGTATTACAAATGTA
** *** * * * *
91133852 TGTATTTTTATTAATACACTTGTATCAAATCATCACCATGCA-TTGTCTTTATTTAATTTATTTC
65 TACATACATATTAATACACATGTATCAAATCATCACCATACATTTGTCATAATTTAATTTATTTC
*
91133916 TTAATAT
130 ATAATAT
91133923 AATATTTATA
Statistics
Matches: 110, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
156 52 0.47
157 58 0.53
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (157 bp):
TAATATAATAATAATAATTAAAATAAATATCTATTTAATATCAAATACAAGTATTACAAATGTAT
ACATACATATTAATACACATGTATCAAATCATCACCATACATTTGTCATAATTTAATTTATTTCA
TAATATTAGGAATAATAATTATAATAA
Found at i:91135043 original size:43 final size:43
Alignment explanation
Indices: 91134953--91135066 Score: 108
Period size: 43 Copynumber: 2.7 Consensus size: 43
91134943 TGATTACATG
* * * *
91134953 TAAGACCATGTTTGGGACATTGGAATTGTATTGAGATTATGTG
1 TAAGACCATGTCTGGGACATTGGCATCGTATTGAGATTATGTA
91134996 TAAGACCATGTCTGGGACATTGGCATCGTTAATT-A-ATT-TCGTA
1 TAAGACCATGTCTGGGACATTGGCATCG-T-ATTGAGATTAT-GTA
* * * *
91135039 TAAGACCCTTTCTGGGATAGTGGCATCG
1 TAAGACCATGTCTGGGACATTGGCATCG
91135067 ATATATAATA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.02
43 54 0.90
44 2 0.03
45 3 0.05
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATCGTATTGAGATTATGTA
Found at i:91136525 original size:93 final size:93
Alignment explanation
Indices: 91136411--91136581 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
91136401 GCCCATAAGT
* *
91136411 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91136476 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
91136504 GAACTCGGACTCAACTGAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
91136569 CGAGTTCGGATGC
66 CGAGTTCGGATGC
91136582 TCAGCCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:91136578 original size:46 final size:46
Alignment explanation
Indices: 91136403--91136578 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
91136393 TGTAACCCGC
* * *
91136403 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
91136449 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
91136499 -C-TCA-CGAACTCGGACTCAACTGAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
91136542 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
91136579 TGCTCAGCCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:91140833 original size:24 final size:25
Alignment explanation
Indices: 91140801--91140847 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
91140791 TAATTAGATA
91140801 AATATTATTTTATTAATATTTTAAT
1 AATATTATTTTATTAATATTTTAAT
*
91140826 AATA-TATTTTATTATTATTTTA
1 AATATTATTTTATTAATATTTTA
91140848 TTATATAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
AATATTATTTTATTAATATTTTAAT
Found at i:91140851 original size:11 final size:11
Alignment explanation
Indices: 91140803--91140851 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
91140793 ATTAGATAAA
91140803 TATTATTTTAT
1 TATTATTTTAT
*
91140814 TAATATTTTAAT
1 TATTATTTT-AT
*
91140826 AATATATTTTAT
1 TAT-TATTTTAT
91140838 TATTATTTTAT
1 TATTATTTTAT
91140849 TAT
1 TAT
91140852 ATAAAGAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 19 0.59
12 7 0.22
13 6 0.19
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:91143024 original size:46 final size:46
Alignment explanation
Indices: 91142972--91143245 Score: 379
Period size: 46 Copynumber: 6.0 Consensus size: 46
91142962 AGTGTGCTCT
**
91142972 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* *
91143018 CTGATATGAAATGTATAAGACCATGGTCGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
**
91143064 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
*
91143110 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
91143156 GTGACATGAAAAGAATAAGATCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
91143202 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCA
91143246 TCATGTCAAA
Statistics
Matches: 210, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 209 1.00
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:91144197 original size:29 final size:29
Alignment explanation
Indices: 91144155--91144211 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
91144145 TGCCATAGTG
* *
91144155 TCTTCCAATTATGGTCTTATTCATTTCTA
1 TCTTCCAACTATGGTATTATTCATTTCTA
*
91144184 TCTTTCAACTATGGTATTATTCATTTCT
1 TCTTCCAACTATGGTATTATTCATTTCT
91144212 TGTCATGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.21, C:0.19, G:0.07, T:0.53
Consensus pattern (29 bp):
TCTTCCAACTATGGTATTATTCATTTCTA
Found at i:91144250 original size:46 final size:46
Alignment explanation
Indices: 91144182--91144478 Score: 411
Period size: 46 Copynumber: 6.5 Consensus size: 46
91144172 TATTCATTTC
* *
91144182 TATCTTTCAACTATGGTATTATTCA-TTTCTTGTCATGTTGCTATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTC-TGTCATGTTGCTATGG
* *
91144228 TATCTTTCAACCGTGGTCTTATTCATTTTCTGTCATGTTTCTATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCTATGG
* *
91144274 TATCTTTCAACCGTGGTCTTATTCATTTTCTGTCATGTTG-TCATAG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCT-ATGG
91144320 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCTATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCTATGG
* * *
91144366 TATCTTTCAACCATGGTCTTATTAATTTTCTATCATGTTGCCATGG
1 TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCTATGG
* * *
91144412 TATCTTTCAACCATGGTCTTATTCA-TTTCTCGTCATATTGCCATAG
1 TATCTTTCAACCATGGTCTTATTCATTTTCT-GTCATGTTGCTATGG
* * *
91144458 CATCTTTCAACTATGATCTTA
1 TATCTTTCAACCATGGTCTTA
91144479 CATATCTAAA
Statistics
Matches: 229, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
45 6 0.03
46 218 0.95
47 5 0.02
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (46 bp):
TATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCTATGG
Found at i:91144356 original size:22 final size:22
Alignment explanation
Indices: 91144287--91144356 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
91144277 CTTTCAACCG
91144287 TGGTCTTATTCATTTTCTGTCA
1 TGGTCTTATTCATTTTCTGTCA
* * ***
91144309 TGTTGTCATAGT-ATCTTTCAACCA
1 TG--GTCTTATTCAT-TTTCTGTCA
91144333 TGGTCTTATTCATTTTCTGTCA
1 TGGTCTTATTCATTTTCTGTCA
91144355 TG
1 TG
91144357 TTGCTATGGT
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
22 16 0.47
23 4 0.12
24 14 0.41
ACGTcount: A:0.17, C:0.19, G:0.14, T:0.50
Consensus pattern (22 bp):
TGGTCTTATTCATTTTCTGTCA
Found at i:91144430 original size:138 final size:138
Alignment explanation
Indices: 91144182--91144478 Score: 454
Period size: 138 Copynumber: 2.2 Consensus size: 138
91144172 TATTCATTTC
* *
91144182 TATCTTTCAACTATGGTATTATTCATTTCTTGTCATGTTGCTATGGTATCTTTCAACCGTGGTCT
1 TATCTTTCAACTATGGTCTTATTCATTTCTTGTCATGTTGCTATGGTATCTTTCAACCATGGTCT
* * * * * *
91144247 TATTCATTTTCTGTCATGTTTCTATGGTATCTTTCAACCGTGGTCTTATTCATTT-TCTGTCATG
66 TATTAATTTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTC-GTCATA
*
91144311 TTGTCATAG
130 TTGCCATAG
*
91144320 TATCTTTCAACCATGGTCTTATTCATTT-TCTGTCATGTTGCTATGGTATCTTTCAACCATGGTC
1 TATCTTTCAACTATGGTCTTATTCATTTCT-TGTCATGTTGCTATGGTATCTTTCAACCATGGTC
91144384 TTATTAATTTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTCGTCATA
65 TTATTAATTTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTCGTCATA
91144449 TTGCCATAG
130 TTGCCATAG
* *
91144458 CATCTTTCAACTATGATCTTA
1 TATCTTTCAACTATGGTCTTA
91144479 CATATCTAAA
Statistics
Matches: 144, Mismatches: 13, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
137 1 0.01
138 141 0.98
139 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.13, T:0.47
Consensus pattern (138 bp):
TATCTTTCAACTATGGTCTTATTCATTTCTTGTCATGTTGCTATGGTATCTTTCAACCATGGTCT
TATTAATTTTCTATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCTCGTCATAT
TGCCATAG
Found at i:91144572 original size:45 final size:45
Alignment explanation
Indices: 91144450--91144573 Score: 151
Period size: 45 Copynumber: 2.8 Consensus size: 45
91144440 CTCGTCATAT
* * * * * **
91144450 TGCCATAGCATCTTTCAACTATGATCTTACAT-ATCTAAATCGTGA
1 TGCCATAACGTCTTTCAGCTATGGTCTTAC-TCGTCTAAATCGCAA
*
91144495 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAATCGCAA
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTAAATCGCAA
*
91144540 TGCCATATCGTCTTTCAGCTATGGTCTTACTCGT
1 TGCCATAACGTCTTTCAGCTATGGTCTTACTCGT
91144574 TTCTGGTATG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.01
45 68 0.99
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.36
Consensus pattern (45 bp):
TGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTAAATCGCAA
Found at i:91144588 original size:45 final size:42
Alignment explanation
Indices: 91144492--91144591 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 42
91144482 ATCTAAATCG
91144492 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAA
1 TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAA
* *
91144534 TCGCAATGCCATATCGTCTTTCAGCTATGGTCTTACTCGTTTCTGGTA
1 T-G--ATGCCATAACGTCTTTCAGCTATGGTCTTACTCG--TCT-GAA
91144582 TGATGCCATA
1 TGATGCCATA
91144592 GTCCAACTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
42 1 0.02
43 1 0.02
45 41 0.82
47 4 0.08
48 3 0.06
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (42 bp):
TGATGCCATAACGTCTTTCAGCTATGGTCTTACTCGTCTGAA
Found at i:91144643 original size:22 final size:22
Alignment explanation
Indices: 91144600--91144645 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
91144590 TAGTCCAACT
*
91144600 ATGGTCTTACACATGTATTGCC
1 ATGGTCTTACACATGTAGTGCC
91144622 ATGGTCTTACAC-TCGTAGTGCC
1 ATGGTCTTACACAT-GTAGTGCC
91144644 AT
1 AT
91144646 ATCCCAGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.35
Consensus pattern (22 bp):
ATGGTCTTACACATGTAGTGCC
Found at i:91145907 original size:24 final size:24
Alignment explanation
Indices: 91145880--91145957 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
91145870 TCCTTATTCC
91145880 CTTTCTCTATAATATTTCTCATTA
1 CTTTCTCTATAATATTTCTCATTA
* * * *
91145904 CTTTCTCT-T-ACA-TCCTTATTCC
1 CTTTCTCTATAATATTTCTCATT-A
91145926 CTTTCTCTATAATATTTCTCATTA
1 CTTTCTCTATAATATTTCTCATTA
91145950 CTTTCTCT
1 CTTTCTCT
91145958 TACTTCCCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
21 6 0.14
22 10 0.24
23 2 0.05
24 18 0.43
25 6 0.14
ACGTcount: A:0.19, C:0.27, G:0.00, T:0.54
Consensus pattern (24 bp):
CTTTCTCTATAATATTTCTCATTA
Found at i:91145921 original size:46 final size:46
Alignment explanation
Indices: 91145867--91145960 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
91145857 TAAGTTTATA
91145867 ACATCCTTATTCCCTTTCTCTATAATATTTCTCATTACTTTCTCTT
1 ACATCCTTATTCCCTTTCTCTATAATATTTCTCATTACTTTCTCTT
91145913 ACATCCTTATTCCCTTTCTCTATAATATTTCTCATTACTTTCTCTT
1 ACATCCTTATTCCCTTTCTCTATAATATTTCTCATTACTTTCTCTT
91145959 AC
1 AC
91145961 TTCCCTTCAC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.20, C:0.29, G:0.00, T:0.51
Consensus pattern (46 bp):
ACATCCTTATTCCCTTTCTCTATAATATTTCTCATTACTTTCTCTT
Found at i:91145932 original size:22 final size:24
Alignment explanation
Indices: 91145863--91145937 Score: 84
Period size: 24 Copynumber: 3.2 Consensus size: 24
91145853 TTACTAAGTT
91145863 TATAACATCCTTATTCCCTTTCTC
1 TATAACATCCTTATTCCCTTTCTC
* * * *
91145887 TATAATATTTCTCATT-ACTTTCTC
1 TATAACA-TCCTTATTCCCTTTCTC
91145911 T-T-ACATCCTTATTCCCTTTCTC
1 TATAACATCCTTATTCCCTTTCTC
91145933 TATAA
1 TATAA
91145938 TATTTCTCAT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
21 6 0.15
22 10 0.26
23 2 0.05
24 15 0.38
25 6 0.15
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (24 bp):
TATAACATCCTTATTCCCTTTCTC
Found at i:91155622 original size:17 final size:17
Alignment explanation
Indices: 91155602--91155638 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
91155592 TTTCTTTTCC
*
91155602 TTTTCCTTTTGTTTTTA
1 TTTTCCTTTTATTTTTA
*
91155619 TTTTTCTTTTATTTTTA
1 TTTTCCTTTTATTTTTA
91155636 TTT
1 TTT
91155639 CTATTTCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.81
Consensus pattern (17 bp):
TTTTCCTTTTATTTTTA
Found at i:91164416 original size:27 final size:27
Alignment explanation
Indices: 91164340--91164429 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
91164330 TTTAGTTTAC
* *
91164340 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
91164367 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
91164394 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
91164421 TAAAATTAC
1 TAAAATTAC
91164430 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:91164439 original size:54 final size:54
Alignment explanation
Indices: 91164340--91164446 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
91164330 TTTAGTTTAC
* * *
91164340 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
91164394 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
91164447 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:91164465 original size:27 final size:26
Alignment explanation
Indices: 91164435--91164697 Score: 314
Period size: 27 Copynumber: 9.8 Consensus size: 26
91164425 ATTACCAAAG
* *
91164435 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
*
91164462 TACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
91164488 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
91164515 TACCCTCGATTTAC-AAATTACTGTTT
1 TACCCTCGATTTACAAAATTAC-GTTT
91164541 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
*
91164568 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTAC-GTTT
91164595 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTA-CGTTT
* * * *
91164622 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTAC-GTTT
* * * * *
91164649 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTAC-GTTT
91164676 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
91164698 AGAAATACCC
Statistics
Matches: 211, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
25 1 0.00
26 50 0.24
27 158 0.75
28 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (26 bp):
TACCCTCGATTTACAAAATTACGTTT
Found at i:91164612 original size:54 final size:54
Alignment explanation
Indices: 91164435--91164697 Score: 368
Period size: 54 Copynumber: 4.9 Consensus size: 54
91164425 ATTACCAAAG
* * * * *
91164435 TACCCCCGATTTACAGAATTATCGTTTTACCC-CGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
91164488 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
91164541 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
91164595 TACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
91164649 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
91164698 AGAAATACCC
Statistics
Matches: 190, Mismatches: 18, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
53 81 0.43
54 109 0.57
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:91164706 original size:27 final size:27
Alignment explanation
Indices: 91164676--91164761 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
91164666 ATTACTATTT
*
91164676 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
91164703 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
91164730 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
91164757 TACCC
1 TACCC
91164762 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:91164748 original size:54 final size:52
Alignment explanation
Indices: 91164690--91164815 Score: 146
Period size: 54 Copynumber: 2.4 Consensus size: 52
91164680 CTCGATTTAC
* **
91164690 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTGGGT
** *
91164744 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTGGGT
*
91164797 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
91164816 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
52 2 0.03
53 19 0.31
54 38 0.61
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.28
Consensus pattern (52 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTGGGT
Found at i:91164768 original size:27 final size:26
Alignment explanation
Indices: 91164690--91164833 Score: 128
Period size: 27 Copynumber: 5.4 Consensus size: 26
91164680 CTCGATTTAC
**
91164690 AAAATTA-CAGAAATACCCTCAATTTGT
1 AAAATTACCA-AAATACCC-CTGTTTGT
91164717 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCT-GTTTGT
* *
91164744 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCCT-GTTTGT
* **
91164771 AAAATTACTAAAATACCCCTGTGGGT
1 AAAATTACCAAAATACCCCTGTTTGT
** * **
91164797 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACCAAAATACCCCTGT-TTGT
91164824 AAAATTACCA
1 AAAATTACCA
91164834 TTTTGCCCCT
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
26 24 0.24
27 74 0.74
28 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.28
Consensus pattern (26 bp):
AAAATTACCAAAATACCCCTGTTTGT
Found at i:91164828 original size:53 final size:54
Alignment explanation
Indices: 91164715--91164833 Score: 134
Period size: 53 Copynumber: 2.2 Consensus size: 54
91164705 CCCTCAATTT
** **
91164715 GTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGGGTAAAATTACCAAAATACCCATGGTGG
* * ** *
91164769 GAAAAATTACTAAAATACCCCT-GTGGGTAAAATTACTGAAATACCC-TTGTGGG
1 GTAAAATTACCAAAATACCCCTAGTGGGTAAAATTACCAAAATACCCATGGT-GG
91164822 GTAAAATTACCA
1 GTAAAATTACCA
91164834 TTTTGCCCCT
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
52 3 0.06
53 30 0.57
54 20 0.38
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.28
Consensus pattern (54 bp):
GTAAAATTACCAAAATACCCCTAGTGGGTAAAATTACCAAAATACCCATGGTGG
Found at i:91168605 original size:27 final size:27
Alignment explanation
Indices: 91168529--91168618 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
91168519 TTTAGTTTAC
* *
91168529 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
91168556 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
91168583 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
91168610 TAAAATTAC
1 TAAAATTAC
91168619 CAAAGTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:91168628 original size:54 final size:54
Alignment explanation
Indices: 91168529--91168635 Score: 128
Period size: 54 Copynumber: 2.0 Consensus size: 54
91168519 TTTAGTTTAC
* * *
91168529 TAAAATTACCGAAATACCCTTAGTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
* * *
91168583 TAAAATTACTGAAATA-CCTTCGACTTGTAAAATTAC-CAAAGTACCCCCGATTT
1 TAAAATTACCGAAATACCCTTAG-CTTGTAAAAATACTCAAA-TACCCCCGATTT
91168636 ACAGAATTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 8 0.18
54 37 0.82
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (54 bp):
TAAAATTACCGAAATACCCTTAGCTTGTAAAAATACTCAAATACCCCCGATTTG
Found at i:91168643 original size:27 final size:27
Alignment explanation
Indices: 91168624--91168942 Score: 305
Period size: 27 Copynumber: 11.8 Consensus size: 27
91168614 ATTACCAAAG
*
91168624 TACCCCCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
*
91168651 TACCCCCGATTTACATAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
91168678 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
91168705 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
91168732 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
91168759 TGCCCTCGATTTACAGAATTACTGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * *
91168786 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
91168813 TACCCTTGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * * *
91168840 TACCCTCGATTTACAAAATTATCATTT
1 TACCCCCGATTTACAGAATTACCGTTT
** * **
91168867 TACCGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* * ** **
91168894 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCGTTT
* *
91168921 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACAGAATTAC
91168943 AGAAATACCC
Statistics
Matches: 252, Mismatches: 40, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 252 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (27 bp):
TACCCCCGATTTACAGAATTACCGTTT
Found at i:91168661 original size:81 final size:81
Alignment explanation
Indices: 91168570--91168860 Score: 208
Period size: 81 Copynumber: 3.6 Consensus size: 81
91168560 AATACTGAAA
* * * **
91168570 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCAAAGTACCCCCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
91168635 TACAGAATTA-TCGTTT
66 TACAGAATTACT-GTTT
* * * *** * **** *
91168651 TACCCCCGATTTACATAATTACCGTTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
91168716 TACAGAATTACTGTTT
66 TACAGAATTACTGTTT
*** * * * ***** *
91168732 TACCCTCGATTTATAAAATTACCGTTTTGCCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
* * *
91168797 TATAAAATTACCGTTT
66 TACAGAATTACTGTTT
* * * ** *
91168813 TACCCTTGATTTATAGAATTA-CTATTTTACCCTCGATTTACAAAATTA
1 TACCCTCGATTTATAAAATTACCGA-AATACCCTCGACTTACAAAATTA
91168861 TCATTTTACC
Statistics
Matches: 176, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.01
81 174 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACCGAAATACCCTCGACTTACAAAATTACCAAAGTACCCCCGATT
TACAGAATTACTGTTT
Found at i:91168671 original size:54 final size:54
Alignment explanation
Indices: 91168624--91168942 Score: 422
Period size: 54 Copynumber: 5.9 Consensus size: 54
91168614 ATTACCAAAG
* * * * * *
91168624 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
91168678 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* *
91168732 TACCCTCGATTTATAAAATTACCGTTTTGCCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * *
91168786 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * *
91168840 TACCCTCGATTTACAAAATTATCATTTTACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
* * * * ** *
91168894 TTCTCTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
91168943 AGAAATACCC
Statistics
Matches: 239, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 239 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:91168868 original size:81 final size:80
Alignment explanation
Indices: 91168624--91168942 Score: 386
Period size: 81 Copynumber: 4.0 Consensus size: 80
91168614 ATTACCAAAG
* * * * *
91168624 TACCCCCGATTTACAGAATTATCGTTTTACCCCCGATTTACATAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
91168689 TACAAAATTACCGTTT
66 TACAAAATTA-CGTTT
* * * * *
91168705 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTGCCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
91168770 TACAGAATTACTGTTT
66 TACAAAATTAC-GTTT
* * * * *
91168786 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
*
91168851 TACAAAATTATCATTT
66 TACAAAATTA-CGTTT
* * ** * * * *
91168867 TACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
91168932 TACAAAATTAC
66 TACAAAATTAC
91168943 AGAAATACCC
Statistics
Matches: 211, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
80 2 0.01
81 208 0.99
82 1 0.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (80 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTTTACCCTCGATT
TACAAAATTACGTTT
Found at i:91168951 original size:27 final size:27
Alignment explanation
Indices: 91168921--91169006 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
91168911 ATTACTATTT
*
91168921 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
91168948 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
91168975 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
91169002 TACCC
1 TACCC
91169007 ATGGTTTGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.02
27 50 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:91168993 original size:54 final size:53
Alignment explanation
Indices: 91168935--91169061 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 53
91168925 CTCGATTTAC
* **
91168935 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
91168989 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
91169043 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
91169062 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
53 4 0.06
54 55 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:91169013 original size:27 final size:27
Alignment explanation
Indices: 91168935--91169033 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
91168925 CTCGATTTAC
*
91168935 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
*
91168962 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
91168989 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
91169016 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
91169034 CTGTAGGGTA
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
27 62 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:91169046 original size:27 final size:27
Alignment explanation
Indices: 91168960--91169079 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
91168950 CCCTCAATTT
**
91168960 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
91168987 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
91169014 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
91169041 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
91169068 GTAAAATTACCA
1 GTAAAATTACCA
91169080 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:91173850 original size:28 final size:28
Alignment explanation
Indices: 91173804--91173872 Score: 122
Period size: 28 Copynumber: 2.5 Consensus size: 28
91173794 TTTAAAACCC
*
91173804 TAGGGGT-ATATCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
91173831 TAGGGGTAATTTCGGTAATTTTGCTCTT
1 TAGGGGTAATTTCGGTAATTTTGCTCTT
91173859 TAGGGGTAATTTCG
1 TAGGGGTAATTTCG
91173873 TGATCTACGC
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 7 0.17
28 33 0.82
ACGTcount: A:0.19, C:0.10, G:0.28, T:0.43
Consensus pattern (28 bp):
TAGGGGTAATTTCGGTAATTTTGCTCTT
Found at i:91178567 original size:19 final size:18
Alignment explanation
Indices: 91178543--91178589 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
91178533 TTTAACCGAG
91178543 TAATAAATTATAAAAAAA
1 TAATAAATTATAAAAAAA
**
91178561 TTAATAATATT-TAAACTAA
1 -TAATAA-ATTATAAAAAAA
91178580 TAATAAATTA
1 TAATAAATTA
91178590 AAATTTTACA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
17 3 0.12
18 6 0.25
19 12 0.50
20 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
TAATAAATTATAAAAAAA
Found at i:91182897 original size:2 final size:2
Alignment explanation
Indices: 91182892--91182935 Score: 79
Period size: 2 Copynumber: 22.0 Consensus size: 2
91182882 TATGTTCTAT
*
91182892 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91182934 TA
1 TA
91182936 AGTGTTTCCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:91183324 original size:2 final size:2
Alignment explanation
Indices: 91183317--91183351 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
91183307 CAAATCTATT
91183317 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91183352 GTTTTGTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91184246 original size:127 final size:125
Alignment explanation
Indices: 91184012--91184329 Score: 413
Period size: 127 Copynumber: 2.5 Consensus size: 125
91184002 GAAAATCCCT
* *
91184012 TAAAACGAAGGCAATGTTCGATGTTTGGAAATTCGGGAAATCGTGCTCTACTGTGCTGGGTTTCG
1 TAAAAC-AAGGCAATGTTCGATGTTTGG-AATTCGGGGAATCGTGCCCTAC-GTGCTGGGTTTCG
* * * * * *
91184077 ATTTCCCGTTTGTTCAAAATAATCGAACCCTCCTTTAGAATTTCATTCGTGTTTTTCTAAATTC
63 ATTTCCCGTTTATTCAAAATAATCGAAACATCCTTTAGAATTTCATTCGTATTCTT-TAAAGTC
* * *
91184141 TAAAACAAGGCAATGTTTGATGCTTGGAATTCGGGGAACCGTGCCCTATCGTGCTGGGTTTCGAT
1 TAAAACAAGGCAATGTTCGATGTTTGGAATTCGGGGAATCGTGCCCTA-CGTGCTGGGTTTCGAT
* *
91184206 TTCTCGTTTATTCAAAATAATC-AAATATACCTTTAGAATTTCATTCGTATTCTTTAAAGTC
65 TTCCCGTTTATTCAAAATAATCGAAACAT-CCTTTAGAATTTCATTCGTATTCTTTAAAGTC
* * *
91184267 TAAAACAAGGTAATGTTCAATGTTTGGAAGTTCGAGGAATCGTGCCCTACCGTGCTGGGTTTC
1 TAAAACAAGGCAATGTTCGATGTTTGGAA-TTCGGGGAATCGTGCCCTA-CGTGCTGGGTTTC
91184330 AGTTTTCCGT
Statistics
Matches: 166, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
126 34 0.20
127 106 0.64
128 20 0.12
129 6 0.04
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (125 bp):
TAAAACAAGGCAATGTTCGATGTTTGGAATTCGGGGAATCGTGCCCTACGTGCTGGGTTTCGATT
TCCCGTTTATTCAAAATAATCGAAACATCCTTTAGAATTTCATTCGTATTCTTTAAAGTC
Found at i:91185017 original size:2 final size:2
Alignment explanation
Indices: 91185010--91185054 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
91185000 AAAACAAAAG
*
91185010 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
91185052 AT A
1 AT A
91185055 AAGACCAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91185117 original size:25 final size:27
Alignment explanation
Indices: 91185061--91185116 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
91185051 TATAAAGACC
* *
91185061 AAAATAAGTAATGTATATAATAACTTA
1 AAAATAAATAATATATATAATAACTTA
*
91185088 AAAATAAATAATATATATAA-AATTTA
1 AAAATAAATAATATATATAATAACTTA
91185114 AAA
1 AAA
91185117 TGGGCAATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 8 0.31
27 18 0.69
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (27 bp):
AAAATAAATAATATATATAATAACTTA
Found at i:91187887 original size:16 final size:15
Alignment explanation
Indices: 91187861--91187895 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
91187851 TGATGTGAAT
91187861 AATATAAAATATTAA
1 AATATAAAATATTAA
*
91187876 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
91187892 AATA
1 AATA
91187896 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:91188071 original size:20 final size:20
Alignment explanation
Indices: 91188014--91188073 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
91188004 AATACTACAT
91188014 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
91188033 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
91188056 AAATATGTACATAATATA
1 AAATATGTACATAATATA
91188074 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:91188112 original size:22 final size:23
Alignment explanation
Indices: 91188051--91188147 Score: 88
Period size: 25 Copynumber: 4.0 Consensus size: 23
91188041 ACGTGATAAT
*
91188051 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
91188074 GTGTAAAAAATACATACATAATATA
1 AT-T-AAAAATATATACATAATATA
*
91188099 ATT-AAAATATATACATAAGATAA
1 ATTAAAAATATATACATAATAT-A
*
91188122 CATGTAAAAATATATATATATATATA
1 -AT-TAAAAATATATACATA-ATATA
91188148 TAAATAATAT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
22 16 0.27
23 2 0.03
24 4 0.07
25 20 0.34
26 14 0.24
27 3 0.05
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:91188138 original size:2 final size:2
Alignment explanation
Indices: 91188131--91188197 Score: 52
Period size: 2 Copynumber: 34.5 Consensus size: 2
91188121 ACATGTAAAA
* *
91188131 AT AT AT AT AT AT AT AT AT AA AT A- AT AT AGT AT A- AA AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* *
91188172 AC AT A- AA AT AGT AT A- AT AT AT AT AT A
1 AT AT AT AT AT A-T AT AT AT AT AT AT AT A
91188198 CGTAATATAG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
1 4 0.08
2 45 0.85
3 4 0.08
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (2 bp):
AT
Found at i:91188169 original size:23 final size:23
Alignment explanation
Indices: 91188126--91188195 Score: 90
Period size: 23 Copynumber: 3.1 Consensus size: 23
91188116 AGATAACATG
91188126 TAAA-AATATA-TATATATATATA
1 TAAATAATATAGTATA-ATATATA
*
91188148 TAAATAATATAGTATAAAATATA
1 TAAATAATATAGTATAATATATA
* *
91188171 TACATAAAATAGTATAATATATA
1 TAAATAATATAGTATAATATATA
91188194 TA
1 TA
91188196 TACGTAATAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
22 4 0.10
23 34 0.81
24 4 0.10
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (23 bp):
TAAATAATATAGTATAATATATA
Found at i:91188171 original size:14 final size:13
Alignment explanation
Indices: 91188093--91188191 Score: 61
Period size: 13 Copynumber: 7.9 Consensus size: 13
91188083 ATACATACAT
91188093 AATATA-AT-TAA
1 AATATATATATAA
*
91188104 AATATATACATAA
1 AATATATATATAA
* * *
91188117 GATA-ACATGTAA
1 AATATATATATAA
91188129 AA-ATATATAT--
1 AATATATATATAA
91188139 -ATATATATAT-A
1 AATATATATATAA
91188150 AATAATATAGTATAA
1 AAT-ATATA-TATAA
*
91188165 AATATATACATAA
1 AATATATATATAA
91188178 AATAGTATAATATA
1 AATA-TAT-ATATA
91188192 TATATACGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 18
0.71 0.11 0.19
Matches are distributed among these distances:
9 1 0.01
10 8 0.12
11 7 0.10
12 13 0.19
13 19 0.28
14 11 0.16
15 8 0.12
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.34
Consensus pattern (13 bp):
AATATATATATAA
Found at i:91188204 original size:23 final size:23
Alignment explanation
Indices: 91188130--91188204 Score: 66
Period size: 23 Copynumber: 3.2 Consensus size: 23
91188120 AACATGTAAA
*
91188130 AATA-TATATATATATATATAAAT
1 AATAGTATA-ATATATATATACAT
91188153 AATATAGTATAA-A-ATATATACAT
1 -A-ATAGTATAATATATATATACAT
*
91188176 AAAATAGTATAATATATATATACGT
1 --AATAGTATAATATATATATACAT
91188201 AATA
1 AATA
91188205 TAGAATTTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 11
0.77 0.04 0.19
Matches are distributed among these distances:
23 22 0.50
24 5 0.11
25 13 0.30
26 4 0.09
ACGTcount: A:0.56, C:0.03, G:0.04, T:0.37
Consensus pattern (23 bp):
AATAGTATAATATATATATACAT
Found at i:91188250 original size:24 final size:23
Alignment explanation
Indices: 91188223--91188274 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
91188213 AGAATATACC
*
91188223 TAATATATTA-AAAGAATATATATA
1 TAATATAATATAAAGAA-ATATA-A
*
91188247 TAATATAATATTAAGAAATATAA
1 TAATATAATATAAAGAAATATAA
91188270 TAATA
1 TAATA
91188275 ACAAAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (23 bp):
TAATATAATATAAAGAAATATAA
Found at i:91188791 original size:30 final size:30
Alignment explanation
Indices: 91188753--91188848 Score: 174
Period size: 30 Copynumber: 3.2 Consensus size: 30
91188743 GTACAAGTGA
*
91188753 TGGTGGAGCAAGTGTGGCTAGTGGAGTAGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
*
91188783 TAGTGGAGCAAGTGTGGCTAGTGGAGTTGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
91188813 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
1 TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
91188843 TGGTGG
1 TGGTGG
91188849 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
TGGTGGAGCAAGTGTGGCTAGTGGAGTTGG
Found at i:91189654 original size:88 final size:85
Alignment explanation
Indices: 91189502--91189800 Score: 298
Period size: 88 Copynumber: 3.4 Consensus size: 85
91189492 GTGATCCTGA
* * * * **
91189502 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATT-AAAAACAGAAATTGA
1 GCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTTAAAAC-A-AAATTGTAAAACAGATTTTGA
* * *
91189566 AAATAGCTCAGCACGTGAGCCAAG
63 AAATACCTCAGCA-GTGACCCGAG
* *
91189590 GCTCAACTCACTTCTAGCAATATGAGTTGATTTTTAAAACAAAATTTGTAAACACAGATTTTGAA
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTAAAACAAAA-TTGTAAA-ACAGATTTTGAA
* *
91189655 AATACCTCGGTATGTGACCCGAG
64 AATACCTCAGCA-GTGACCCGAG
* * * * *
91189678 GCTCAACTCATTTATCGTAATATGAGTTGATTCTTGAAAAGCATAAATTG-AAAAAACATTAATT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATT-TTTAAAA-CA-AAATTGTAAAACAGATT--TT
*
91189742 GAAAATACCTCAGCA-TGCCCCGAG
61 GAAAATACCTCAGCAGTGACCCGAG
91189766 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
1 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTT
91189801 TGATGAACAG
Statistics
Matches: 176, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
85 2 0.01
86 3 0.02
87 14 0.08
88 125 0.71
89 9 0.05
90 20 0.11
91 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (85 bp):
GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTAAAACAAAATTGTAAAACAGATTTTGAAAA
TACCTCAGCAGTGACCCGAG
Found at i:91189770 original size:176 final size:175
Alignment explanation
Indices: 91189484--91189800 Score: 417
Period size: 176 Copynumber: 1.8 Consensus size: 175
91189474 TGATTCTTTA
* * *
91189484 CTCGGCATGTGATCCTGAGCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAGACA
1 CTCGGCATGTGATCCCGAGCTCAACTCATTTATCGCAATATGAATTGACTCTTGAAAACTAGACA
* *
91189549 TTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTAGCAATATG
66 TTAAAAACAGAAATTGAAAATACCTCAGCAC-TGACCCAAGGCTCAACTCACTTCTAGCAATATG
91189614 AGTTGATTTTTAAAACAAAATTTGTAAACACAGATTTTGAAAATAC
130 AGTTGATTTTTAAAACAAAATTTGTAAACACAGATTTTGAAAATAC
* * * *
91189660 CTCGGTATGTGA-CCCGAGGCTCAACTCATTTATCGTAATATGAGTTGATTCTTGAAAAGCATA-
1 CTCGGCATGTGATCCCGA-GCTCAACTCATTTATCGCAATATGAATTGACTCTTGAAAA-C-TAG
** * * * *
91189723 A-ATTGAAAAAACATTAATTGAAAATACCTCAGCA-TGCCCCGAGGCTCAACTCATTTCTCGCAA
63 ACATT--AAAAACAGAAATTGAAAATACCTCAGCACTGACCCAAGGCTCAACTCACTTCTAGCAA
91189786 TATGAGTTGATTTTT
126 TATGAGTTGATTTTT
91189801 TGATGAACAG
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
175 4 0.03
176 88 0.73
177 2 0.02
178 27 0.22
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (175 bp):
CTCGGCATGTGATCCCGAGCTCAACTCATTTATCGCAATATGAATTGACTCTTGAAAACTAGACA
TTAAAAACAGAAATTGAAAATACCTCAGCACTGACCCAAGGCTCAACTCACTTCTAGCAATATGA
GTTGATTTTTAAAACAAAATTTGTAAACACAGATTTTGAAAATAC
Found at i:91189942 original size:77 final size:74
Alignment explanation
Indices: 91189729--91190278 Score: 486
Period size: 71 Copynumber: 7.2 Consensus size: 74
91189719 CATAAATTGA
** * * * **
91189729 AAAAACATTAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
91189794 GATTTTTTG
66 GATTTTTTG
** * * ** * *
91189803 ATGAACAGAAATT-AAAACTACCTCAACGTATCTTGAGGCTCAACTTACCTCTCGCAACATGAGT
1 AAAAACAGAAATTGAAAAC-ACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
91189867 TGATTTTTTTG
65 TGA-TTTTTTG
* *
91189878 AAAAACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTTAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAACACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAG
91189943 TTGATTTTTTTG
64 TTGA-TTTTTTG
* * * *
91189955 ACAAACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTG-AAAACACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGA
91190020 GTTGATTTTTTG
63 GTTGATTTTTTG
*
91190032 AAAAACAGAAATTGAAAACACCTCAGCATGT---GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
91190094 GA-TTTTTG
66 GATTTTTTG
* ** * ** *
91190102 AAAAACATAAATTGAGCAGAAATTGAAAATACCTCAATGGGTCTTGAGGCTCAACTCACCTCTCA
1 ------A-AAA---A-CAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
91190167 CAATATGAGTTGATTTTTTG
55 CAATATGAGTTGATTTTTTG
** * * ** * ** *
91190187 ---ATGATAAATTGAAAATACCTCAATGTGACTTGAGGTTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
91190249 GATTTTTTAA
66 GATTTTTT-G
91190259 ATTAAAACAGAAATTGAAAA
1 A--AAAACAGAAATTGAAAA
91190279 TAGAAATGGA
Statistics
Matches: 396, Mismatches: 53, Indels: 51
0.79 0.11 0.10
Matches are distributed among these distances:
70 6 0.02
71 94 0.24
73 4 0.01
74 47 0.12
75 28 0.07
76 21 0.05
77 86 0.22
78 50 0.13
80 1 0.00
81 21 0.05
84 32 0.08
85 6 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (74 bp):
AAAAACAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTG
Found at i:91190003 original size:78 final size:76
Alignment explanation
Indices: 91189761--91190116 Score: 428
Period size: 77 Copynumber: 4.8 Consensus size: 76
91189751 TCAGCATGCC
** **
91189761 CCGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTGATGAACAGAAATT--AAAACTAC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAAC-AC
* *
91189824 CTCAAC--GTAT
65 CTCAGCGTGTAG
* * * *
91189834 CTTGAGGCTCAACTTACCTCTCGCAACATGAGTTGATTTTTTTGAAAAACAGAAGTTG-AAAACA
1 C-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAAACA
*
91189898 CCTCAGCGTGTGAC
64 CCTCAGCGTGT-AG
* * *
91189912 CCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAAATAC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTGAAAAACAC
91189977 CTCAGCGTGTAAG
65 CTCAGCGTGT-AG
*
91189990 CCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG-AAAACACC
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAACACC
*
91190054 TCAGCATGT--
66 TCAGCGTGTAG
*
91190063 --GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACATAAATTGA
1 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGA
91190117 GCAGAAATTG
Statistics
Matches: 249, Mismatches: 26, Indels: 18
0.85 0.09 0.06
Matches are distributed among these distances:
70 19 0.08
71 32 0.13
73 1 0.00
74 29 0.12
75 24 0.10
76 20 0.08
77 72 0.29
78 52 0.21
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (76 bp):
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAAACACC
TCAGCGTGTAG
Found at i:91190152 original size:155 final size:151
Alignment explanation
Indices: 91189807--91190364 Score: 503
Period size: 155 Copynumber: 3.6 Consensus size: 151
91189797 TTTTTGATGA
* * *
91189807 ACAGAAATT-AAAACTACCTCAACGTATCTTGAGGCTCAACTTACCTCTCGCAACATGAGTTGAT
1 ACAGAAATTGAAAA-TACCTCAGCG--TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
91189871 TTTTTTGAAAAACAGAAGTTGAAAACACCTCAGCGTGTGACCCGAGGCTTAACTCACCTCTCGCA
63 TTTTTTGAAAAACAGAAATTGAAAACACCTCAGCATGT-----GAGGCTCAACTCACCTCTCGCA
***
91189936 ATATGAGTTGATTTTT-TTGAC--AA---
123 ATATGAGTTGATTTTTAAAAACAAAATTG
* *
91189959 ACAGAAATTGAAAAATACCTCAGCGTGTAAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 ACAGAAATTG-AAAATACCTCAGCGTCT-TG---AGGCTCAACTCACCTCTCGCAATATGAGTTG
91190024 A-TTTTTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATA
61 ATTTTTTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATA
91190088 TGAGTTGATTTTTGAAAAACATAAATTG
126 TGAGTTGATTTTT-AAAAACA-AAATTG
* *
91190116 AGCAGAAATTGAAAATACCTCAATGGGTCTTGAGGCTCAACTCACCTCTCACAATATGAGTTGA-
1 A-CAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** * * * *
91190180 TTTTTTG---ATGATAAATTGAAAATACCTCAATGTGACT-TGAGGTTCAACTCACCTCTCGCAA
63 TTTTTTGAAAAACAGAAATTGAAAACACCTC-A-G-CA-TGTGAGGCTCAACTCACCTCTCGCAA
91190241 TATGAGTTGATTTTTTAAATTAAAACAGAAATTG
124 TATGAGTTGA-TTTTT--A--AAAACA-AAATTG
* * * * *
91190275 AAAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 ---ACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
91190340 TTTTTTGAAACACATAAATTAAAAA
63 TTTTTTGAAAAACAGAAATTGAAAA
91190365 AAAGAAATTA
Statistics
Matches: 340, Mismatches: 34, Indels: 53
0.80 0.08 0.12
Matches are distributed among these distances:
149 37 0.11
151 4 0.01
152 27 0.08
153 10 0.03
154 43 0.13
155 102 0.30
156 6 0.02
157 12 0.04
158 11 0.03
159 52 0.15
160 8 0.02
161 16 0.05
162 1 0.00
163 11 0.03
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (151 bp):
ACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTGAAAAACAGAAATTGAAAACACCTCAGCATGTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTAAAAACAAAATTG
Found at i:91190510 original size:75 final size:74
Alignment explanation
Indices: 91190407--91190764 Score: 449
Period size: 75 Copynumber: 4.8 Consensus size: 74
91190397 CGACGTGTGG
*
91190407 CCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAA-CAGAAATTGAAAATAC
91190472 CTCAGCGTGT
65 CTCAGCGTGT
*
91190482 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAGCCAGAAATTGAAAATAC
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAA-ACAGAAATTGAAAATAC
91190547 CTCAGCGTGT
65 CTCAGCGTGT
* * *
91190557 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATATAATTTGAAAAT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGA-AAACAGA-AA-TTGAAAAT
*
91190622 ATCTCAGCGTGT
63 ACCTCAGCGTGT
* * * * *
91190634 CCTGAGGCTGAACTCACCTCTCGCAATAAGAGTTGA-T-TTTTGACAAACAAAAATTGAAATTA-
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGA-AAACAGAAATTGAAAATAC
91190696 CTCAGC--GT
65 CTCAGCGTGT
** * * * * *
91190704 CTTGAGGCTCAACTCACTTCTCGCAATATGAATTGATTTTTTTTG-AAACATAAATTAAAAA
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTCTTTTGAAAACAGAAATTGAAAA
91190765 AACGAAAATT
Statistics
Matches: 254, Mismatches: 22, Indels: 18
0.86 0.07 0.06
Matches are distributed among these distances:
70 33 0.13
71 13 0.05
72 7 0.03
73 13 0.05
74 2 0.01
75 129 0.51
76 5 0.02
77 52 0.20
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (74 bp):
CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAACAGAAATTGAAAATACC
TCAGCGTGT
Found at i:91190661 original size:152 final size:146
Alignment explanation
Indices: 91190407--91190830 Score: 478
Period size: 150 Copynumber: 2.8 Consensus size: 146
91190397 CGACGTGTGG
* * * *
91190407 CCCGAGACTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGA-AAAGCAGAAATTGAAAATA
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAA-AAAAAATTGAAAATA
* * *
91190471 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGA-AAGCCAGA
65 CCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGACAA-ACAAA
91190535 AATTGAAAATACCTCAGCGTGT
128 AATTGAAAATA-CTCAGC--GT
*
91190557 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAATATAATTTGAAAAT
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAA-A-AAATTGAAAAT
* * *
91190622 ATCTCAGCGTGTCCTGAGGCTGAACTCACCTCTCGCAATAAGAGTTGA-TTTTTGACAAACAAAA
64 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAAAA
*
91190686 ATTGAAATTACTCAGCGT
129 ATTGAAAATACTCAGCGT
** * *
91190704 CTTGAGGCTCAACTCACTTCTCGCAATATGAATTGATTTTTTTTGAAACATAAATTAAAAAAACG
1 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTG--------A-T--AAAAA--
91190769 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA-ATGAGTTGATTT
52 AAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
91190831 GAAAAGCAGA
Statistics
Matches: 235, Mismatches: 21, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
147 34 0.14
148 8 0.03
149 6 0.03
150 63 0.27
151 6 0.03
152 54 0.23
156 1 0.00
157 1 0.00
158 8 0.03
159 53 0.23
160 1 0.00
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (146 bp):
CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATAAAAAAAAATTGAAAATAC
CTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAAAAAT
TGAAAATACTCAGCGT
Found at i:91190968 original size:14 final size:13
Alignment explanation
Indices: 91190933--91190976 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
91190923 TTGATTTTTG
91190933 AAAACAGAAATTA
1 AAAACAGAAATTA
**
91190946 AAAGTAGAAATTGA
1 AAAACAGAAATT-A
91190960 AAAACAGAAATTA
1 AAAACAGAAATTA
91190973 AAAA
1 AAAA
91190977 TACCTCGGCG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.68, C:0.05, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAACAGAAATTA
Found at i:91190980 original size:99 final size:101
Alignment explanation
Indices: 91190762--91191048 Score: 397
Period size: 99 Copynumber: 2.9 Consensus size: 101
91190752 CATAAATTAA
*
91190762 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA-ATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
91190825 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* *
91190860 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTTAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
91190925 GATTTTTGAAAA-CAGAAATT-AAAAGTAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* * * * *
91190959 AAAAACAGAAATTAAAAATACCTCGGCGTACCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
91191024 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAGCAGAAATTGAAA
91191049 TTACCTCAGT
Statistics
Matches: 167, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
98 52 0.31
99 90 0.54
100 14 0.08
101 11 0.07
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
Found at i:91198152 original size:16 final size:15
Alignment explanation
Indices: 91198126--91198160 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
91198116 TGATGTGAAT
91198126 AATATAAAATATTAA
1 AATATAAAATATTAA
*
91198141 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
91198157 AATA
1 AATA
91198161 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:91198339 original size:20 final size:20
Alignment explanation
Indices: 91198282--91198341 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
91198272 AATACTACAT
91198282 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
91198301 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
91198324 AAATATGTACATAATATA
1 AAATATGTACATAATATA
91198342 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:91198371 original size:48 final size:49
Alignment explanation
Indices: 91198297--91198402 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 49
91198287 TGTACATATA
* * * * * *
91198297 TAAAAAATAAATACGTGATAATATTAAAAATATGTACATAATAT-A-GTG
1 TAAAAAATAAATACATAATAAAATT-AAAATATATACATAAGATAACATG
*
91198345 TAAAAAATACATACATAATAAAATTAAAATATATACATAAGATAACATG
1 TAAAAAATAAATACATAATAAAATTAAAATATATACATAAGATAACATG
91198394 TAAAAAATA
1 TAAAAAATA
91198403 TATATATATA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
47 16 0.33
48 22 0.45
49 11 0.22
ACGTcount: A:0.59, C:0.06, G:0.07, T:0.28
Consensus pattern (49 bp):
TAAAAAATAAATACATAATAAAATTAAAATATATACATAAGATAACATG
Found at i:91198429 original size:15 final size:14
Alignment explanation
Indices: 91198398--91198441 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
91198388 AACATGTAAA
91198398 AAATATATATATAT
1 AAATATATATATAT
91198412 AAATA-ATATAGTATT
1 AAATATATATA-TA-T
*
91198427 AAAGATATATATAT
1 AAATATATATATAT
91198441 A
1 A
91198442 CGTAATATAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 5 0.19
14 9 0.35
15 7 0.27
16 5 0.19
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (14 bp):
AAATATATATATAT
Found at i:91198434 original size:29 final size:28
Alignment explanation
Indices: 91198367--91198451 Score: 82
Period size: 29 Copynumber: 3.0 Consensus size: 28
91198357 ACATAATAAA
* *
91198367 ATTAAAATATATACATAAGATAACAT-GT
1 ATTAAAATATATATATAA-ATAATATAGT
**
91198395 AAAAAATATATATATATAAATAATATAGT
1 ATTAAA-ATATATATATAAATAATATAGT
**
91198424 ATTAAAGATATATATATACGTAATATAG
1 ATTAAA-ATATATATATAAATAATATAG
91198452 AATTTAGAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
28 10 0.22
29 36 0.78
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (28 bp):
ATTAAAATATATATATAAATAATATAGT
Found at i:91198514 original size:21 final size:21
Alignment explanation
Indices: 91198457--91198513 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
91198447 TATAGAATTT
91198457 AGAATATACCTAAT-ATATTAAA
1 AGAATATA--TAATAATATTAAA
91198479 AGAATATATATATAATATT--A
1 AGAATATATA-ATAATATTAAA
91198499 AGAA-ATATAATAATA
1 AGAATATATAATAATA
91198514 ACAAAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
18 6 0.18
19 5 0.15
20 7 0.21
21 2 0.06
22 13 0.39
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.33
Consensus pattern (21 bp):
AGAATATATAATAATATTAAA
Found at i:91199034 original size:30 final size:30
Alignment explanation
Indices: 91198994--91199091 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
91198984 AGGTACAAGT
91198994 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
91199024 GGTAGTGGAGCAAGTGTGGCTAGTGGAGTTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAG-TA
*
91199055 -GTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
91199084 GGTGGTGG
1 GGTGGTGG
91199092 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
29 1 0.02
30 60 0.95
31 2 0.03
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:91199081 original size:18 final size:18
Alignment explanation
Indices: 91198998--91199051 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
91198988 ACAAGTGGTG
91198998 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
91199016 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
91199028 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
91199046 GTGGAG
1 GTGGAG
91199052 TTAGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:91199586 original size:14 final size:15
Alignment explanation
Indices: 91199551--91199588 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
91199541 TACAATATTC
*
91199551 AAATAATAACAATTA
1 AAATAGTAACAATTA
91199566 AAATAGTAACAA-TA
1 AAATAGTAACAATTA
*
91199580 TAATAGTAA
1 AAATAGTAA
91199589 AATGACAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.26
Consensus pattern (15 bp):
AAATAGTAACAATTA
Done.