Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 300 of 325
Found at i:91733106 original size:20 final size:20
Alignment explanation
Indices: 91733064--91733135 Score: 74
Period size: 20 Copynumber: 3.4 Consensus size: 20
91733054 TCTAATACTA
*
91733064 TTATTATTTATCTAATTTTTAT
1 TTATTATTTA-CT-ATTTCTAT
91733086 TTATCTATTTAC-ATTTCTAT
1 TTAT-TATTTACTATTTCTAT
*
91733106 TTATTATATTTCTATTTCTAT
1 TTATTAT-TTACTATTTCTAT
91733127 TTATATATT
1 TTAT-TATT
91733136 AATATTATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
19 3 0.07
20 14 0.32
21 13 0.30
22 8 0.18
23 6 0.14
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.65
Consensus pattern (20 bp):
TTATTATTTACTATTTCTAT
Found at i:91733380 original size:3 final size:3
Alignment explanation
Indices: 91733372--91733451 Score: 60
Period size: 3 Copynumber: 26.7 Consensus size: 3
91733362 TATTCTCGCC
* *
91733372 TTA TTA TTA TTA TTA TT- TTA TTTA TTA TT- TTA CTT- TCAA TTC TT-
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA -TTA T-TA TTA TTA
* *
91733416 GTA TTA TTCA TTA TTA TTG TTA TTA TTA TTA TTA TT
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TT
91733452 TCCACTTATA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
2 6 0.10
3 47 0.76
4 9 0.15
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:91733540 original size:7 final size:7
Alignment explanation
Indices: 91733528--91733558 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
91733518 GTCAATGTTA
91733528 TATATTT
1 TATATTT
91733535 TATATTT
1 TATATTT
91733542 TATATTT
1 TATATTT
91733549 TATATTT
1 TATATTT
91733556 TAT
1 TAT
91733559 TACGTATGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TATATTT
Found at i:91738645 original size:2 final size:2
Alignment explanation
Indices: 91738638--91738668 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91738628 GGACAGCAAA
91738638 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91738669 AAACAAAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:91739221 original size:15 final size:15
Alignment explanation
Indices: 91739203--91739260 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 15
91739193 AAAGTTTTCT
91739203 AAAAAAACAAAACAA
1 AAAAAAACAAAACAA
91739218 AAAAAAAC--AACAA
1 AAAAAAACAAAACAA
*
91739231 AAAAAGGAAGAAAACAA
1 AAAAA--AACAAAACAA
*
91739248 AAAGAAAAGAAAA
1 AAA-AAAACAAAA
91739261 AAGAGAGGCC
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
13 10 0.27
15 10 0.27
16 7 0.19
17 8 0.22
18 2 0.05
ACGTcount: A:0.83, C:0.09, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAACAA
Found at i:91741434 original size:44 final size:44
Alignment explanation
Indices: 91740920--91741899 Score: 358
Period size: 44 Copynumber: 22.0 Consensus size: 44
91740910 AATACATAAA
* * *
91740920 CCTTATCT-TCCTGAAGTTGCAATGGAGCAGATTGAAGCCACCAG
1 CCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
* * * * ***
91740964 CCTTATCTCTCTAAAGTTGCAGTGAAGCAGGTTCAAATTACCAAT
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAT
* * * * * * *
91741009 TCTTACCTC-CTTGAAGTTTCAGCGGAGTAGATCGAAGCTACAAAT
1 CCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGCCAC-AAT
* * * * ** *
91741054 -CTCT-TCTCCCTGAAATTACATTATAGAAGATTGAAGCCACAAT
1 CCT-TATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
* * ** ** *
91741097 CCTTATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAAATACACAAA
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCA-GAT-TGAAGCCACAAT
* ** * *
91741143 CCTTATCTCCCTGAAGTTGCAGTAAAGTAGATTCAAGCCACTAA-
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCAC-AAT
***
91741187 CCTTATCTCTCTGAAGTTGCAGTGGAGCA-AGTTGAAATTACCAAT
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-TTGAAGCCA-CAAT
* * * * * *
91741232 TCTCATCTC-CTTGAAGTTTCAGTGGAGTAGATCGAAGCTACAAAT
1 CCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGCCAC-AAT
* * * * *
91741277 CTCTT-T-TCCCTGAAATTGCATTAGAGCAGATTGGAGCCACAAT
1 C-CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
* * ** ** * *
91741320 CCTTATCTCTCTGAAGTTGCAGTAGAGTAGGATAAAAAATACATAAA
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCA-GAT--TGAAGCCACAAT
* *
91741367 CCTTATCT-TCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAG
1 CCTTATCTCT-CTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
* ***
91741411 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAAT
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAT
* * * ** * * *
91741456 TCTTACCTC-CTTGAAGTTCCAACGGAGTAGATCGAAGCTACAAAT
1 CCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGCCAC-AAT
* * ** * * **
91741501 CTCTTCTC-CT-TGAAATTATATTAGAGCAGATCAAAGCCACAAT
1 C-CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
** * ** **
91741544 ATTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAA-
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCA-GAT-TGAAGCCACAAT
* * * * *
91741589 ACTCTATCTC-CTTGAAGTTGCAATGGAGCAGATTGAAACCACCAG
1 CCT-TATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
* ** ***
91741634 CCTTATCTCTCTGAAGTTACAGTGGAGCAGGCTGAAATTACCAAT
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAT
* * * * ** * *
91741679 TCTTACCTC-CTTGAAGTTCCAGTGGAGTAGATCAAAACTACAAAT
1 CCTTATCTCTC-TGAAGTTGCAGTGGAGCAGATTGAAGCCAC-AAT
* * * * ** *
91741724 CTCTTCTC-CT-TGAAATTACATTGGAGCAGATCAAAGCTACAAT
1 C-CTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
* * ** ** *
91741767 CCTTATCTCTCTGAAGTTGTAGTAGAGCAGGATAAAATACACAAA
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCA-GATTGAAGCCACAAT
* * * * ***
91741812 CCTTATCTCCCTGAAGTCGCAGTGAAGCAGGTTGAAATTACCAAT
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCA-CAAT
* * * * * *
91741857 TCTTATCTCTTTGAAGTTTCAGCGGAGTAGATTGAAGCTACAA
1 CCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAA
91741900 ATCTTTTCCC
Statistics
Matches: 685, Mismatches: 203, Indels: 96
0.70 0.21 0.10
Matches are distributed among these distances:
42 12 0.02
43 21 0.03
44 317 0.46
45 228 0.33
46 77 0.11
47 30 0.04
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (44 bp):
CCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAT
Found at i:91741540 original size:447 final size:446
Alignment explanation
Indices: 91740697--91741847 Score: 1775
Period size: 447 Copynumber: 2.6 Consensus size: 446
91740687 TATGGCGAAT
* *
91740697 CTTATCTTCCTAAAGTTGCAGTAAAGTAGATTCAAGCCACCAACCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTAAAGTAGATTCAAGCCACCAACCTTATCTCTCTGAAGTTGCAG
* **
91740762 TGGAGCAGGTTGAAATTACCAATTGTCACCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACA
66 TGGAGCAGGTTGAAATTACCAATTCTCACCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCTACA
* *
91740827 AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAGAGCCACAATCCTTATCTCTTTGAAGTTA
131 AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAGAGCCACAATCCTTATCTCTCTGAAGTTG
* *
91740892 CAGTAGAGTTGGATAAAAAATACATAAACCTTATCTTCCTGAAGTTGCAATGGAGCAGATTGAAG
196 CAGTAGAGTAGGATAAAAAATACATAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG
91740957 CCACCAGCCTTATCTCTCTAAAGTTGCAGTGAAGCAGGTTCAAATTACCAATTCTTACCTCCTTG
261 CCACCAGCCTTATCTCTCTAAAGTTGCAGTGAAGCAGGTTCAAATTACCAATTCTTACCTCCTTG
* * * **
91741022 AAGTTTCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTATAGAAGATTG
326 AAGTTCCAACGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGAAGATCA
*
91741087 AAGCCACAATCCTTATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAAATACACAAA
391 AAGCCACAATACTTATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAAATACACAAA
*
91741143 CCTTATCTCCCTGAAGTTGCAGTAAAGTAGATTCAAGCCACTAACCTTATCTCTCTGAAGTTGCA
1 -CTTATCTCCCTGAAGTTGCAGTAAAGTAGATTCAAGCCACCAACCTTATCTCTCTGAAGTTGCA
* *
91741208 GTGGAGCAAGTTGAAATTACCAATTCTCATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCTAC
65 GTGGAGCAGGTTGAAATTACCAATTCTCACCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCTAC
* * * **
91741273 AAATCTCTTTTCCCTGAAATTGCATTAGAGCAGATTGGAGCCACAATCCTTATCTCTCTGAAGTT
130 AAATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAGAGCCACAATCCTTATCTCTCTGAAGTT
91741338 GCAGTAGAGTAGGATAAAAAATACATAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAA
195 GCAGTAGAGTAGGATAAAAAATACATAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAA
* * *
91741403 GCCACCAGCCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTACCTCCTT
260 GCCACCAGCCTTATCTCTCTAAAGTTGCAGTGAAGCAGGTTCAAATTACCAATTCTTACCTCCTT
* * *
91741468 GAAGTTCCAACGGAGTAGATCGAAGCTACAAATCTCTTCTCCTTGAAATTATATTAGAGCAGATC
325 GAAGTTCCAACGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGAAGATC
* *
91741533 AAAGCCACAATATTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAA
390 AAAGCCACAATACTTATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAAATACACAAA
* * ** * * * * *
91741590 CTCTATCTCCTTGAAGTTGCAATGGAGCAGATTGAAACCACCAGCCTTATCTCTCTGAAGTTACA
1 CT-TATCTCCCTGAAGTTGCAGTAAAGTAGATTCAAGCCACCAACCTTATCTCTCTGAAGTTGCA
* * * * *
91741655 GTGGAGCAGGCTGAAATTACCAATTCTTACCTCCTTGAAGTTCCAGTGGAGTAGATCAAAACTAC
65 GTGGAGCAGGTTGAAATTACCAATTCTCACCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCTAC
* * *
91741720 AAATCTCTTCTCCTTGAAATTACATTGGAGCAGATCAAAGCTACAATCCTTATCTCTCTGAAGTT
130 AAATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAGAGCCACAATCCTTATCTCTCTGAAGTT
* * * * * * *
91741785 GTAGTAGAGCAGGAT--AAAATACACAAACCTTATCTCCCTGAAGTCGCAGTGAAGCAGGTTGAA
195 GCAGTAGAGTAGGATAAAAAATACATAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAA
91741848 ATTACCAATT
Statistics
Matches: 640, Mismatches: 63, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
445 43 0.07
446 2 0.00
447 595 0.93
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (446 bp):
CTTATCTCCCTGAAGTTGCAGTAAAGTAGATTCAAGCCACCAACCTTATCTCTCTGAAGTTGCAG
TGGAGCAGGTTGAAATTACCAATTCTCACCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCTACA
AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAGAGCCACAATCCTTATCTCTCTGAAGTTG
CAGTAGAGTAGGATAAAAAATACATAAACCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG
CCACCAGCCTTATCTCTCTAAAGTTGCAGTGAAGCAGGTTCAAATTACCAATTCTTACCTCCTTG
AAGTTCCAACGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAATTACATTAGAGAAGATCA
AAGCCACAATACTTATCTCTCTAAAGTTGCAGTAGAGCAGGATAAAAATACACAAA
Found at i:91741550 original size:133 final size:134
Alignment explanation
Indices: 91741413--91741936 Score: 374
Period size: 133 Copynumber: 3.9 Consensus size: 134
91741403 GCCACCAGCC
* * *
91741413 TTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTCCAA
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGGTTAAAATTACCAATTCTTATCTCCTTGAAGTTACAA
* * * *
91741478 CGGAGTAGATCGAAGCTACAAATCTCTTCTC-CT-TGAAATTATATTAGAGCA-GATCAAAGCCA
66 CGGAGCAGATCGAAGCTAC-AATC-CTTATCTCTCTGAAATTACAGTAGAGCAGGATCAAAGCCA
91741540 CAATAT
129 CAATAT
* * * * *
91741546 TTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAA-ACTCTATCTCCTTGAAGTTGC
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGGTTAAAATTAC-CAATTCT-TATCTCCTTGAAGTTAC
* * * * * * * * * * **
91741610 AATGGAGCAGATTGAAACCACCAGCCTTATCTCTCTGAAGTTACAGTGGAGCAGGCTGAAA-TTA
64 AACGGAGCAGATCGAAGCTACAATCCTTATCTCTCTGAAATTACAGTAGAGCAGGATCAAAGCCA
91741674 CCAAT-T
129 -CAATAT
* * * * * * * *
91741680 CTTACCTC-CTTGAAGTTCCAGTGGAGTAGATCAAAACTA-CAAATCTCT-TCTCCTTGAAATTA
1 -TTATCTCTC-TGAAGTTGCAGTGGAGCAGGTTAAAATTACCAATTCT-TATCTCCTTGAAGTTA
** * * ** * **
91741742 CATTGGAGCAGATCAAAGCTACAATCCTTATCTCTCTGAAGTTGTAGTAGAGCAGGATAAAATAC
63 CAACGGAGCAGATCGAAGCTACAATCCTTATCTCTCTGAAATTACAGTAGAGCAGGATCAAAGCC
*
91741807 ACAA-ACC
128 ACAATA-T
* * * * * * *
91741814 TTATCTCCCTGAAGTCGCAGTGAAGCAGGTTGAAATTACCAATTCTTATCTCTTTGAAGTTTCAG
1 TTATCTCTCTGAAGTTGCAGTGGAGCAGGTTAAAATTACCAATTCTTATCTCCTTGAAGTTACAA
* * * * *
91741879 CGGAGTAGATTGAAGCTACAAAT-CTT-T-TCCCTAAAATTACATTAGAGC-GGATCAAAGC
66 CGGAGCAGATCGAAGCTAC-AATCCTTATCTCTCTGAAATTACAGTAGAGCAGGATCAAAGC
91741937 ACCAATTCCT
Statistics
Matches: 299, Mismatches: 76, Indels: 34
0.73 0.19 0.08
Matches are distributed among these distances:
131 7 0.02
132 20 0.07
133 138 0.46
134 94 0.31
135 40 0.13
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (134 bp):
TTATCTCTCTGAAGTTGCAGTGGAGCAGGTTAAAATTACCAATTCTTATCTCCTTGAAGTTACAA
CGGAGCAGATCGAAGCTACAATCCTTATCTCTCTGAAATTACAGTAGAGCAGGATCAAAGCCACA
ATAT
Found at i:91741874 original size:223 final size:223
Alignment explanation
Indices: 91740697--91741847 Score: 1667
Period size: 223 Copynumber: 5.2 Consensus size: 223
91740687 TATGGCGAAT
* * ** * * *
91740697 CTTATCTTCCTAAAGTTGCAGTAAAGTAGATTCAAGCCACCAACCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCAG
* * *
91740762 TGGAGCAGGTTGAAATTACCAATTGTCACCTCCTTGAAGTTTCAGCAGAGTAGATCGAAGCTACA
66 TGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
* * *
91740827 AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAGAGCCACAATCCTTATCTCTTTGAAGTTA
131 AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAAAGCCACAATCCTTATCTCTCTGAAGTTG
** *
91740892 CAGTAGAGTTGGATAAAAAATACATAAAC
196 CAGTAGAGCAGGAT-AAAAATACACAAAC
* * *
91740921 CTTATCTTCCTGAAGTTGCAATGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTAAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCAG
* *
91740986 TGAAGCAGGTTCAAATTACCAATTCTTACCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
66 TGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
* * * ** *
91741051 AATCTCTTCTCCCTGAAATTACATTATAGAAGATTGAAGCCACAATCCTTATCTCTCTAAAGTTG
131 AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAAAGCCACAATCCTTATCTCTCTGAAGTTG
91741116 CAGTAGAGCAGGATAAAAATACACAAAC
196 CAGTAGAGCAGGATAAAAATACACAAAC
** * * * *
91741144 CTTATCTCCCTGAAGTTGCAGTAAAGTAGATTCAAGCCACTAACCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCAG
* * * *
91741209 TGGAGCAAGTTGAAATTACCAATTCTCATCTCCTTGAAGTTTCAGTGGAGTAGATCGAAGCTACA
66 TGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
* * * ***
91741274 AATCTCTTTTCCCTGAAATTGCATTAGAGCAGATTGGAGCCACAATCCTTATCTCTCTGAAGTTG
131 AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAAAGCCACAATCCTTATCTCTCTGAAGTTG
* *
91741339 CAGTAGAGTAGGATAAAAAATACATAAAC
196 CAGTAGAGCAGGAT-AAAAATACACAAAC
*
91741368 CTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCAG
* *
91741433 TGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTCCAACGGAGTAGATCGAAGCTACA
66 TGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
* **
91741498 AATCTCTTCTCCTTGAAATTATATTAGAGCAGATCAAAGCCACAATATTTATCTCTCTGAAGTTG
131 AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAAAGCCACAATCCTTATCTCTCTGAAGTTG
91741563 CAGTAGAGCAGGATAAAAATACACAAA-
196 CAGTAGAGCAGGATAAAAATACACAAAC
* * * *
91741590 CTCTATCTCCTTGAAGTTGCAATGGAGCAGATTGAAACCACCAGCCTTATCTCTCTGAAGTTACA
1 CT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCA
* * * * *
91741655 GTGGAGCAGGCTGAAATTACCAATTCTTACCTCCTTGAAGTTCCAGTGGAGTAGATCAAAACTAC
65 GTGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTAC
* *
91741720 AAATCTCTTCTCCTTGAAATTACATTGGAGCAGATCAAAGCTACAATCCTTATCTCTCTGAAGTT
130 AAATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAAAGCCACAATCCTTATCTCTCTGAAGTT
*
91741785 GTAGTAGAGCAGGAT-AAAATACACAAAC
195 GCAGTAGAGCAGGATAAAAATACACAAAC
* * *
91741813 CTTATCTCCCTGAAGTCGCAGTGAAGCAGGTTGAA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAA
91741848 ATTACCAATT
Statistics
Matches: 831, Mismatches: 93, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
222 42 0.05
223 405 0.49
224 384 0.46
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (223 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCTCTGAAGTTGCAG
TGGAGCAGGTTGAAATTACCAATTCTTACCTCCTTGAAGTTTCAGCGGAGTAGATCGAAGCTACA
AATCTCTTCTCCTTGAAATTACATTAGAGCAGATCAAAGCCACAATCCTTATCTCTCTGAAGTTG
CAGTAGAGCAGGATAAAAATACACAAAC
Found at i:91742617 original size:2 final size:2
Alignment explanation
Indices: 91742612--91742650 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
91742602 TAAAAACTGT
91742612 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91742651 CAGTAGCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91743343 original size:21 final size:21
Alignment explanation
Indices: 91743319--91743383 Score: 55
Period size: 21 Copynumber: 3.1 Consensus size: 21
91743309 GCTATTATTA
91743319 TTATTATGTTTCTATTTATAT
1 TTATTATGTTTCTATTTATAT
* *
91743340 TTATTTTGTATTCTA-ATACTA-
1 TTATTATGT-TTCTATTTA-TAT
*
91743361 TTATTAT-TTATCTATTTACAT
1 TTATTATGTT-TCTATTTATAT
91743382 TT
1 TT
91743384 CTATTTATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
19 1 0.03
20 6 0.18
21 20 0.59
22 7 0.21
ACGTcount: A:0.26, C:0.08, G:0.03, T:0.63
Consensus pattern (21 bp):
TTATTATGTTTCTATTTATAT
Found at i:91743423 original size:20 final size:20
Alignment explanation
Indices: 91743365--91743423 Score: 73
Period size: 21 Copynumber: 2.9 Consensus size: 20
91743355 ATACTATTAT
* *
91743365 TATTTATCTATTTACATTTC
1 TATTTATATATTTATATTTC
*
91743385 TATTTATTATATTTCTATTTC
1 TATTTA-TATATTTATATTTC
*
91743406 TATTTATATATTAATATT
1 TATTTATATATTTATATT
91743424 ATTTTCATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTTATATATTTATATTTC
Found at i:91743694 original size:3 final size:3
Alignment explanation
Indices: 91743686--91743727 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
91743676 TATTCTCGCC
91743686 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
91743728 ATTATTATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
CTT
Found at i:91743732 original size:3 final size:3
Alignment explanation
Indices: 91743726--91743881 Score: 185
Period size: 3 Copynumber: 51.7 Consensus size: 3
91743716 CTTCTTCTTC
91743726 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
91743774 TTA TATA TTA TTA CT- TTA CTT- TCAA TTA TT- GTA TTA TTCA TTA TTA
1 TTA T-TA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TT-A TTA TTA
*
91743820 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TT- TTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
* *
91743868 TCA TTA TCA TTA TT
1 TTA TTA TTA TTA TT
91743882 GTTCATGCAT
Statistics
Matches: 132, Mismatches: 12, Indels: 18
0.81 0.07 0.11
Matches are distributed among these distances:
2 5 0.04
3 117 0.89
4 10 0.08
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:91744865 original size:31 final size:31
Alignment explanation
Indices: 91744830--91744892 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
91744820 GGTTTCGACA
91744830 TATGAGAATATATAGAAAAGGCAACTATGGT
1 TATGAGAATATATAGAAAAGGCAACTATGGT
91744861 TATGAGAATATATAGAAAAGGCAACTATGGT
1 TATGAGAATATATAGAAAAGGCAACTATGGT
91744892 T
1 T
91744893 TAAGTTATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.27
Consensus pattern (31 bp):
TATGAGAATATATAGAAAAGGCAACTATGGT
Found at i:91749846 original size:30 final size:30
Alignment explanation
Indices: 91749812--91749872 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
91749802 TCCTTAACTC
91749812 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
91749842 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
91749872 A
1 A
91749873 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:91754875 original size:2 final size:2
Alignment explanation
Indices: 91754868--91754904 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
91754858 ACTCTTAGAC
91754868 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
91754905 GTCTTAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:91757941 original size:49 final size:49
Alignment explanation
Indices: 91757869--91758057 Score: 254
Period size: 49 Copynumber: 3.8 Consensus size: 49
91757859 TGAGGTCACG
* *
91757869 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTGGTCGCA
* * * * * *
91757918 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAG-ATAGT-TGGTCGCA
* *
91757969 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-TTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA-TAGTTGGTCGCA
91758018 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
91758058 CTTCAGCTAC
Statistics
Matches: 120, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
48 2 0.02
49 74 0.62
50 5 0.04
51 39 0.32
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGTTGGTCGCA
Found at i:91758037 original size:100 final size:100
Alignment explanation
Indices: 91757864--91758051 Score: 342
Period size: 100 Copynumber: 1.9 Consensus size: 100
91757854 TATTGTGAGG
* *
91757864 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAGTTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGTACT
91757929 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
66 AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
91757964 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTA-TTGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTTGGTCGCATGTGTAGTAC
91758028 TAAGTGCAGGCTACTATGCGTACC
65 TAAGTGCAGGCTACTATGCGTACC
91758052 AGATAGCTTC
Statistics
Matches: 85, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
100 83 0.98
101 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTGGTCGCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCCGAAAACTGTGA
Found at i:91766043 original size:55 final size:55
Alignment explanation
Indices: 91765983--91766104 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 55
91765973 GTGCAAGCCC
* * * * *
91765983 CACGCCCGTGTTAATTTAACAGGTTCGACCACGGGTGTTAGACATGGGCGTGTCT
1 CACGCCCGTGTTAATTTAACAGGTTCAACCACGGGTCTTACACACGGGCGTGTCG
* * * ** * *
91766038 CACGCCCATGCTAGTTTCTCAGTTTCAACCACGGGTCTTCCACACGGGCGTGTCG
1 CACGCCCGTGTTAATTTAACAGGTTCAACCACGGGTCTTACACACGGGCGTGTCG
91766093 CACGCCCGTGTT
1 CACGCCCGTGTT
91766105 GTTTTGGAAG
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.17, C:0.30, G:0.26, T:0.26
Consensus pattern (55 bp):
CACGCCCGTGTTAATTTAACAGGTTCAACCACGGGTCTTACACACGGGCGTGTCG
Found at i:91766673 original size:247 final size:247
Alignment explanation
Indices: 91766237--91766735 Score: 953
Period size: 247 Copynumber: 2.0 Consensus size: 247
91766227 TCTGTGAAAA
91766237 CACCTGTATTCAAGATTTCTATTAGTAAGTTAGGAGTTAAATACCAAAATTTAAAGAAATTAATA
1 CACCTGTATTCAAGATTTCTATTAGTAAGTTAGGAGTTAAATACCAAAATTTAAAGAAATTAATA
*
91766302 TTGTTAGTGCTCGGGTTGCCTCTCAAGAAGCGCTTATTTATAGTCTAAGCTCGACTTACCTCTTC
66 TTGTTAGTGCTCGGGTTGCCTCCCAAGAAGCGCTTATTTATAGTCTAAGCTCGACTTACCTCTTC
91766367 AGTGAATGGTCATGGTGGTTTAAGGAGTTTATACTCCTCATTCCTGCTATTAATCTCATCAAAAT
131 AGTGAATGGTCATGGTGGTTTAAGGAGTTTATACTCCTCATTCCTGCTATTAATCTCATCAAAAT
91766432 AAGGTTTTAAGCGGGTGTTGTTTACCGTAAAAGTGCCGAACTTGGGATGACT
196 AAGGTTTTAAGCGGGTGTTGTTTACCGTAAAAGTGCCGAACTTGGGATGACT
91766484 CACCTGTATTCAAGATTTCTATTAGTAAGTTAGGAGTTAAATACCAAAATTTAAAGAAATTAATA
1 CACCTGTATTCAAGATTTCTATTAGTAAGTTAGGAGTTAAATACCAAAATTTAAAGAAATTAATA
* *
91766549 TTGTTAGTGCTCGGGTTGCCTCCCAAGAAGCGCTTATTTATAGTCTAAGCTTGACTTACCTCTTT
66 TTGTTAGTGCTCGGGTTGCCTCCCAAGAAGCGCTTATTTATAGTCTAAGCTCGACTTACCTCTTC
91766614 AGTGAATGGTCATGGTGGTTTAAGGAGTTTATACTCCTCATTCCTGCTATTAATCTCATCAAAAT
131 AGTGAATGGTCATGGTGGTTTAAGGAGTTTATACTCCTCATTCCTGCTATTAATCTCATCAAAAT
* *
91766679 AAGGTTTTAAGTGGGTGTTGTTTACCTTAAAAGTGCCGAACTTGGGATGACT
196 AAGGTTTTAAGCGGGTGTTGTTTACCGTAAAAGTGCCGAACTTGGGATGACT
91766731 CACCT
1 CACCT
91766736 CCACCGTACC
Statistics
Matches: 247, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
247 247 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (247 bp):
CACCTGTATTCAAGATTTCTATTAGTAAGTTAGGAGTTAAATACCAAAATTTAAAGAAATTAATA
TTGTTAGTGCTCGGGTTGCCTCCCAAGAAGCGCTTATTTATAGTCTAAGCTCGACTTACCTCTTC
AGTGAATGGTCATGGTGGTTTAAGGAGTTTATACTCCTCATTCCTGCTATTAATCTCATCAAAAT
AAGGTTTTAAGCGGGTGTTGTTTACCGTAAAAGTGCCGAACTTGGGATGACT
Found at i:91782235 original size:15 final size:16
Alignment explanation
Indices: 91782215--91782248 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
91782205 ATGTTGGACC
*
91782215 ATTAACTGGA-GATTT
1 ATTAACTGCACGATTT
91782230 ATTAACTGCACGATTT
1 ATTAACTGCACGATTT
91782246 ATT
1 ATT
91782249 GATTGTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (16 bp):
ATTAACTGCACGATTT
Found at i:91798975 original size:32 final size:32
Alignment explanation
Indices: 91798934--91798997 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
91798924 ATCACTTTTG
91798934 AGGGTTTTGAAGCATTCTAAAGCCTATATAAA
1 AGGGTTTTGAAGCATTCTAAAGCCTATATAAA
91798966 AGGGTTTTGAAGCATTCTAAAGCCTATATAAA
1 AGGGTTTTGAAGCATTCTAAAGCCTATATAAA
91798998 CACCCAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (32 bp):
AGGGTTTTGAAGCATTCTAAAGCCTATATAAA
Found at i:91800765 original size:24 final size:24
Alignment explanation
Indices: 91800733--91800778 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
91800723 ATTGAGAAGG
91800733 TGCCCTCACCATGAGTTACCTCTT
1 TGCCCTCACCATGAGTTACCTCTT
* *
91800757 TGCCCTCACCATGGGTTCCCTC
1 TGCCCTCACCATGAGTTACCTC
91800779 GACGAGATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.41, G:0.15, T:0.30
Consensus pattern (24 bp):
TGCCCTCACCATGAGTTACCTCTT
Found at i:91818205 original size:9 final size:9
Alignment explanation
Indices: 91818193--91818236 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
91818183 TTGAAATTTT
91818193 ATAAAAATG
1 ATAAAAATG
*
91818202 ATAAAAATTTT
1 ATAAAAA--TG
91818213 ATAAAAATG
1 ATAAAAATG
91818222 ATAAAAAT-
1 ATAAAAATG
91818230 ATAAAAA
1 ATAAAAA
91818237 ATAATTATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
8 7 0.23
9 16 0.52
11 8 0.26
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (9 bp):
ATAAAAATG
Found at i:91818209 original size:20 final size:20
Alignment explanation
Indices: 91818186--91818229 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
91818176 AAAATTATTG
91818186 AAATTTTATAAAAATGATAA
1 AAATTTTATAAAAATGATAA
91818206 AAATTTTATAAAAATGATAA
1 AAATTTTATAAAAATGATAA
91818226 AAAT
1 AAAT
91818230 ATAAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
AAATTTTATAAAAATGATAA
Found at i:91818251 original size:9 final size:9
Alignment explanation
Indices: 91818191--91818252 Score: 52
Period size: 9 Copynumber: 6.3 Consensus size: 9
91818181 TATTGAAATT
91818191 TTATAAAAA
1 TTATAAAAA
*
91818200 TGATAAAAA
1 TTATAAAAA
91818209 TTTTATAAAAA
1 --TTATAAAAA
*
91818220 TGATAAAAA
1 TTATAAAAA
*
91818229 TATAAAAAATAA
1 T-T-ATAAA-AA
91818241 TTATAAAAA
1 TTATAAAAA
91818250 TTA
1 TTA
91818253 AAATCTAGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
9 22 0.52
10 4 0.10
11 13 0.31
12 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:91824619 original size:28 final size:28
Alignment explanation
Indices: 91824579--91824657 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
91824569 GCAATCAAAT
* * *
91824579 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
91824607 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
91824635 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
91824658 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:91826883 original size:26 final size:26
Alignment explanation
Indices: 91826803--91826891 Score: 88
Period size: 26 Copynumber: 3.3 Consensus size: 26
91826793 TGAGGCACTG
91826803 TGTGTGTGATTTCCGTAACCGAGCAC
1 TGTGTGTGATTTCCGTAACCGAGCAC
** * ****
91826829 TGTGTGTGCGAGATCAGTTGTTGAGGCAC
1 TGTGTGT--GATTTCCGTAACCGA-GCAC
91826858 TGTGTGTGATTTCCGTAACCGAGCAC
1 TGTGTGTGATTTCCGTAACCGAGCAC
91826884 TGTGTGTG
1 TGTGTGTG
91826892 CGAGATCGGT
Statistics
Matches: 46, Mismatches: 14, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
26 19 0.41
27 8 0.17
28 8 0.17
29 11 0.24
ACGTcount: A:0.17, C:0.18, G:0.33, T:0.33
Consensus pattern (26 bp):
TGTGTGTGATTTCCGTAACCGAGCAC
Found at i:91826980 original size:57 final size:57
Alignment explanation
Indices: 91826569--91826980 Score: 616
Period size: 57 Copynumber: 7.3 Consensus size: 57
91826559 AAGTGAACAT
*
91826569 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCAC--TGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
91826624 AGGCACTGTGTGTGCGAGTTCTGTAACCGAGCACTGTGTGTGTGAGATCGATTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
91826681 AGGCACTGTGTGTGCGAGTTCCGTAATCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
91826738 AGGCACTGTGTGTGCGAGTTCTGTAACTGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
91826795 AGGCACTGTGTGTGTGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
91826852 AGGCAC--TGTGTGTGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
91826907 AGGTACTGTGTGTGTGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* **
91826964 GGGCACTAAGTGTGTGA
1 AGGCACTGTGTGTGTGA
91826981 AATGAGATCA
Statistics
Matches: 325, Mismatches: 28, Indels: 6
0.91 0.08 0.02
Matches are distributed among these distances:
55 85 0.26
57 240 0.74
ACGTcount: A:0.18, C:0.17, G:0.35, T:0.31
Consensus pattern (57 bp):
AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:91831941 original size:28 final size:28
Alignment explanation
Indices: 91831901--91831979 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
91831891 GCAATCAAAT
* * *
91831901 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
91831929 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
91831957 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
91831980 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:91833963 original size:57 final size:57
Alignment explanation
Indices: 91833894--91834363 Score: 845
Period size: 57 Copynumber: 8.2 Consensus size: 57
91833884 AAGTGAACAT
* *
91833894 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
91833951 AGGCACTGTGTGTGCGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
91834008 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGT-CGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
91834064 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
91834121 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
91834178 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATC-GTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
91834234 AGGCACTGTGTGTGCGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
91834291 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
91834348 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
91834364 AAATGAGATC
Statistics
Matches: 400, Mismatches: 9, Indels: 6
0.96 0.02 0.01
Matches are distributed among these distances:
56 111 0.28
57 282 0.70
59 7 0.02
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:91834090 original size:113 final size:114
Alignment explanation
Indices: 91833894--91834363 Score: 845
Period size: 113 Copynumber: 4.1 Consensus size: 114
91833884 AAGTGAACAT
* *
91833894 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
*
91833959 TGTGTGCGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
66 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
91834008 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGT-CGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
91834072 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
66 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
91834121 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
91834186 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATC-GTTGTTG
66 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
91834234 AGGCACTGTGTGTGCGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
* *
91834299 TGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTG
66 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
91834348 GGGCACTAAGTGTGTG
1 AGGCACT--GTGTGTG
91834364 AAATGAGATC
Statistics
Matches: 345, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
113 221 0.64
114 117 0.34
116 7 0.02
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (114 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:91834176 original size:170 final size:170
Alignment explanation
Indices: 91833894--91834363 Score: 843
Period size: 170 Copynumber: 2.8 Consensus size: 170
91833884 AAGTGAACAT
* *
91833894 AGGCACTGTGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
*
91833959 TGTGTGCGAGTTCTGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCG
66 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCG
91834024 AGTTCCGTAACCGAGCACTGTGTGT-CGAGATCGGTTGTTG
131 AGTTCCGTAACCGAGCACTGTGTGTGCGAGATC-GTTGTTG
91834064 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
91834129 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCG
66 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCG
91834194 AGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGTTGTTG
131 AGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGTTGTTG
*
91834234 AGGCACTGTGTGTGCGATTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
* * *
91834299 TGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCAAGATCGGTTGTTGGGGCACTAAGTGTGTG
66 TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACT--GTGTGTG
91834364 AAATGAGATC
Statistics
Matches: 290, Mismatches: 7, Indels: 4
0.96 0.02 0.01
Matches are distributed among these distances:
170 276 0.95
171 7 0.02
172 7 0.02
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (170 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTG
TGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTGAGGCACTGTGTGTGCG
AGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGTTGTTG
Found at i:91839321 original size:28 final size:28
Alignment explanation
Indices: 91839281--91839359 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
91839271 GCAATCAAAT
* * *
91839281 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
91839309 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
91839337 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
91839360 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:91841264 original size:30 final size:30
Alignment explanation
Indices: 91841223--91841279 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91841213 CACGGGCTGC
*
91841223 CACATGGGCGTGTGGC-CAGCCCGTGTGTCT
1 CACACGGGCGTGT-GCTCAGCCCGTGTGTCT
*
91841253 CACACGGGCGTGTGCTCGGCCCGTGTG
1 CACACGGGCGTGTGCTCAGCCCGTGTG
91841280 GATCTTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 2 0.08
30 22 0.92
ACGTcount: A:0.09, C:0.32, G:0.39, T:0.21
Consensus pattern (30 bp):
CACACGGGCGTGTGCTCAGCCCGTGTGTCT
Found at i:91843096 original size:6 final size:6
Alignment explanation
Indices: 91843087--91843166 Score: 90
Period size: 6 Copynumber: 13.3 Consensus size: 6
91843077 AGATAAAAGG
* *
91843087 AAAAAT AAAACT CAAAAT AAAAAT -AAAAT AAAAGAT AAAAAT AAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA-AT AAAAAT AAAAAT
* * * *
91843135 AAACAT AAACAT AAACAT AAACAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA
91843167 TCAGACTCAA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
5 5 0.08
6 55 0.83
7 6 0.09
ACGTcount: A:0.75, C:0.07, G:0.01, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:91845732 original size:166 final size:166
Alignment explanation
Indices: 91845442--91845757 Score: 393
Period size: 166 Copynumber: 1.9 Consensus size: 166
91845432 GTCCAGGCTG
* * * *
91845442 TTGTTCGCTTCTCCCACACCTATGTGGTCTCCCACACGCCTGTGTGTCCGAACACACAATCGTGT
1 TTGTTCGCTTCTCCCACACCTATGTGGTATCCCACACGCCCGTGTGTCCAAACACACAACCGTGT
* * ** * *
91845507 GCTCCGCCCGTGGAGCTCTCTGACTTGTTTAAAATTTGAAAATTTAACTTTAGTTTTCACATGGC
66 GCTCCGCCCGTGGAGCTCTCTGACTTATTTAAAATTTAAAAATTTAACTCCAATTTTCACACGGC
* *
91845572 CTTGGACACGCCCATGTGTCTAGGCCATGTGCTACA
131 CTAGGACACACCCATGTGTCTAGGCCATGTGCTACA
* * * **
91845608 TTGTTCGCTTCTCTCACA-ATCGTGTGGTATCCCACACGCCCGTGTGTCCAAACACACGGCCGTG
1 TTGTTCGCTTCTCCCACACCT-ATGTGGTATCCCACACGCCCGTGTGTCCAAACACACAACCGTG
* * * *
91845672 TGC-CTTGCCCGTGGAGTTTTCTGACTTATTTAAAATTTAAAAATTTAGCTCCAATTTTCACACG
65 TGCTC-CGCCCGTGGAGCTCTCTGACTTATTTAAAATTTAAAAATTTAACTCCAATTTTCACACG
* *
91845736 GCCTAGGTCACACCCGTGTGTC
129 GCCTAGGACACACCCATGTGTC
91845758 CAGACCGTGT
Statistics
Matches: 125, Mismatches: 23, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
165 2 0.02
166 123 0.98
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (166 bp):
TTGTTCGCTTCTCCCACACCTATGTGGTATCCCACACGCCCGTGTGTCCAAACACACAACCGTGT
GCTCCGCCCGTGGAGCTCTCTGACTTATTTAAAATTTAAAAATTTAACTCCAATTTTCACACGGC
CTAGGACACACCCATGTGTCTAGGCCATGTGCTACA
Found at i:91874034 original size:16 final size:17
Alignment explanation
Indices: 91874013--91874049 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
91874003 CTATTCGTTG
91874013 TTTTCTTTTACT-TTTA
1 TTTTCTTTTACTCTTTA
*
91874029 TTTTCTTTTATTCTTTA
1 TTTTCTTTTACTCTTTA
91874046 TTTT
1 TTTT
91874050 TATCTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTCTTTTACTCTTTA
Found at i:91874045 original size:23 final size:24
Alignment explanation
Indices: 91874019--91874065 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
91874009 GTTGTTTTCT
91874019 TTTACTTTTAT-T-TTCTTTTATTC
1 TTTACTTTTATCTCTT-TTTTATTC
*
91874042 TTTATTTTTATCTCTTTTTTATTC
1 TTTACTTTTATCTCTTTTTTATTC
91874066 ATCCTTTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 10 0.48
24 9 0.43
25 2 0.10
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTACTTTTATCTCTTTTTTATTC
Found at i:91874079 original size:15 final size:15
Alignment explanation
Indices: 91874036--91874079 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
91874026 TTATTTTCTT
91874036 TTAT-TCTTTATTT-
1 TTATCTCTTTATTTA
91874049 TTATCTCTTT-TTTA
1 TTATCTCTTTATTTA
91874063 TTCATC-CTTTATTTA
1 TT-ATCTCTTTATTTA
91874078 TT
1 TT
91874080 TACATTTCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 7 0.26
14 11 0.41
15 9 0.33
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.70
Consensus pattern (15 bp):
TTATCTCTTTATTTA
Found at i:91883188 original size:20 final size:20
Alignment explanation
Indices: 91883163--91883204 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
91883153 GGATTAACCC
91883163 ACTCATGCCATGAAAAGCCT
1 ACTCATGCCATGAAAAGCCT
91883183 ACTCATGCCATGAAAAGCCT
1 ACTCATGCCATGAAAAGCCT
91883203 AC
1 AC
91883205 CTCCACGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.31, G:0.14, T:0.19
Consensus pattern (20 bp):
ACTCATGCCATGAAAAGCCT
Found at i:91889893 original size:25 final size:25
Alignment explanation
Indices: 91889859--91889908 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
91889849 ACAAAGGAAG
91889859 AGATATCATTCCTCAATTTGGCTAT
1 AGATATCATTCCTCAATTTGGCTAT
91889884 AGATATCATTCCTCAATTTGGCTAT
1 AGATATCATTCCTCAATTTGGCTAT
91889909 CTTAACGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (25 bp):
AGATATCATTCCTCAATTTGGCTAT
Found at i:91890546 original size:21 final size:20
Alignment explanation
Indices: 91890520--91890559 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
91890510 ATATAAAAAA
91890520 AATAAAAATAAAATAAAATGC
1 AATAAAAATAAAA-AAAATGC
91890541 AATAAAAATAAAAAAAATG
1 AATAAAAATAAAAAAAATG
91890560 GCTAAAGTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (20 bp):
AATAAAAATAAAAAAAATGC
Found at i:91897668 original size:9 final size:9
Alignment explanation
Indices: 91897654--91897678 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
91897644 ATTTTTACTC
91897654 GATTATCTT
1 GATTATCTT
91897663 GATTATCTT
1 GATTATCTT
91897672 GATTATC
1 GATTATC
91897679 ATTATGCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (9 bp):
GATTATCTT
Found at i:91901188 original size:12 final size:11
Alignment explanation
Indices: 91901128--91901186 Score: 55
Period size: 12 Copynumber: 5.1 Consensus size: 11
91901118 ATAAGTCTTC
91901128 AAATATAAATAA
1 AAATA-AAATAA
**
91901140 AAGGAAAATAA
1 AAATAAAATAA
*
91901151 AATTAAAATTAA
1 AAATAAAA-TAA
91901163 AAATAATAATAA
1 AAATAA-AATAA
*
91901175 TAATAAAATAA
1 AAATAAAATAA
91901186 A
1 A
91901187 TAGACTCAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
11 17 0.45
12 19 0.50
13 2 0.05
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:91902256 original size:57 final size:57
Alignment explanation
Indices: 91902165--91902335 Score: 315
Period size: 57 Copynumber: 3.0 Consensus size: 57
91902155 ACTGTTAAAA
91902165 TAATCAAGAATTAGAGTATTCTAAAAAAAATGAAAAATGAATCCTAAGACTAAGGAT
1 TAATCAAGAATTAGAGTATTCTAAAAAAAATGAAAAATGAATCCTAAGACTAAGGAT
* * *
91902222 TAATCAAGAATTAGAGTAATCTAAAAAAATTGAAAAATGAATCCTAACACTAAGGAT
1 TAATCAAGAATTAGAGTATTCTAAAAAAAATGAAAAATGAATCCTAAGACTAAGGAT
91902279 TAATCAAGAATTAGAGTATTCTAAAAAAAATGAAAAATGAATCCTAAGACTAAGGAT
1 TAATCAAGAATTAGAGTATTCTAAAAAAAATGAAAAATGAATCCTAAGACTAAGGAT
91902336 CAAAAACGCA
Statistics
Matches: 108, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 108 1.00
ACGTcount: A:0.53, C:0.09, G:0.13, T:0.25
Consensus pattern (57 bp):
TAATCAAGAATTAGAGTATTCTAAAAAAAATGAAAAATGAATCCTAAGACTAAGGAT
Found at i:91907965 original size:25 final size:24
Alignment explanation
Indices: 91907931--91907977 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
91907921 TTGCTTCTTG
* *
91907931 TATTTGATTTCATATAATCATTTGA
1 TATTTAATTTCAGA-AATCATTTGA
91907956 TATTTAATTTCAGAAATCATTT
1 TATTTAATTTCAGAAATCATTT
91907978 ACATTCTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (24 bp):
TATTTAATTTCAGAAATCATTTGA
Found at i:91910101 original size:20 final size:19
Alignment explanation
Indices: 91910072--91910110 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
91910062 TTAATTGCTT
*
91910072 AAGTTGCTAACTTAGAATGA
1 AAGTTGCTAA-TTACAATGA
*
91910092 AAGTTTCTAATTACAATGA
1 AAGTTGCTAATTACAATGA
91910111 TGATTAGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.41, C:0.10, G:0.15, T:0.33
Consensus pattern (19 bp):
AAGTTGCTAATTACAATGA
Found at i:91916843 original size:24 final size:26
Alignment explanation
Indices: 91916811--91916867 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 26
91916801 TGTTTATAAC
91916811 TGCATTGCATT-CATC-T-CATACATT
1 TGCATTGCATTGCATCATGCAT-CATT
91916835 TGCATTGCATTGCATCATTGCATCATT
1 TGCATTGCATTGCATCA-TGCATCATT
91916862 TGCATT
1 TGCATT
91916868 AGATTTTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 11 0.38
25 4 0.14
27 11 0.38
28 3 0.10
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (26 bp):
TGCATTGCATTGCATCATGCATCATT
Found at i:91925962 original size:10 final size:9
Alignment explanation
Indices: 91925945--91926008 Score: 51
Period size: 9 Copynumber: 6.9 Consensus size: 9
91925935 ACCTTCTTTT
91925945 TTTTATTTA
1 TTTTATTTA
91925954 TTCTTATTT-
1 TT-TTATTTA
*
91925963 TTAT-TTTA
1 TTTTATTTA
91925971 TTTTATTTA
1 TTTTATTTA
91925980 TTTTAGTTTTA
1 TTTTA--TTTA
* *
91925991 TTTTCTTTTC
1 TTTT-ATTTA
91926001 TTTTATTT
1 TTTTATTT
91926009 TGATTTCAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
7 3 0.07
8 4 0.09
9 16 0.36
10 13 0.30
11 8 0.18
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.78
Consensus pattern (9 bp):
TTTTATTTA
Found at i:91925963 original size:16 final size:17
Alignment explanation
Indices: 91925938--91925994 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 17
91925928 TCATTGAACC
*
91925938 TTCTTTTTTTTA-TTTA
1 TTCTTATTTTTATTTTA
91925954 TTCTTATTTTTATTTTA
1 TTCTTATTTTTATTTTA
91925971 TT-TTA--TTTATTTTA
1 TTCTTATTTTTATTTTA
91925985 GTT-TTATTTT
1 -TTCTTATTTT
91925995 CTTTTCTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 9 0.25
15 5 0.14
16 14 0.39
17 8 0.22
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.79
Consensus pattern (17 bp):
TTCTTATTTTTATTTTA
Found at i:91925967 original size:12 final size:11
Alignment explanation
Indices: 91925944--91926024 Score: 55
Period size: 11 Copynumber: 7.7 Consensus size: 11
91925934 AACCTTCTTT
91925944 TTTTTA-TTTA
1 TTTTTATTTTA
*
91925954 TTCTTATTTT-
1 TTTTTATTTTA
91925964 TATTTTATTTTA
1 T-TTTTATTTTA
91925976 --TTTATTTTA
1 TTTTTATTTTA
*
91925985 GTTTTATTTT-
1 TTTTTATTTTA
* *
91925995 CTTTTCTTTTA
1 TTTTTATTTTA
* *
91926006 TTTTGATTTCA
1 TTTTTATTTTA
*
91926017 ATTTTATT
1 TTTTTATT
91926025 CTTTTATTTT
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
9 9 0.16
10 14 0.25
11 32 0.58
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.75
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:91925971 original size:5 final size:5
Alignment explanation
Indices: 91925941--91926024 Score: 75
Period size: 5 Copynumber: 16.4 Consensus size: 5
91925931 TTGAACCTTC
91925941 TTTT- TTTTA -TTTA TTCTTA TTTTTA TTTTA TTTTA -TTTA TTTTA GTTTTA
1 TTTTA TTTTA TTTTA TT-TTA -TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
* * *
91925991 TTTTC TTTTC TTTTA TTTTGA TTTCAA TTTTA TT
1 TTTTA TTTTA TTTTA TTTT-A TTT-TA TTTTA TT
91926025 CTTTTATTTT
Statistics
Matches: 68, Mismatches: 4, Indels: 15
0.78 0.05 0.17
Matches are distributed among these distances:
4 12 0.18
5 35 0.51
6 19 0.28
7 2 0.03
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:91925989 original size:25 final size:25
Alignment explanation
Indices: 91925941--91926034 Score: 86
Period size: 25 Copynumber: 3.7 Consensus size: 25
91925931 TTGAACCTTC
*
91925941 TTTT-TTTTATTTATTCTTATTTTTA
1 TTTTATTTTATTTATT-TTAGTTTTA
91925966 TTTTATTTTATTTATTTTAGTTTTA
1 TTTTATTTTATTTATTTTAGTTTTA
* * *
91925991 TTTTCTTTTCTTTTATTTT-GATTTCAA
1 TTTTATTTT-ATTTATTTTAG-TTT-TA
*
91926018 TTTTATTCT-TTTATTTT
1 TTTTATTTTATTTATTTT
91926035 GAAAAACATA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
25 29 0.49
26 22 0.37
27 8 0.14
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (25 bp):
TTTTATTTTATTTATTTTAGTTTTA
Found at i:91936121 original size:9 final size:8
Alignment explanation
Indices: 91936038--91936123 Score: 61
Period size: 8 Copynumber: 10.6 Consensus size: 8
91936028 AAATAACATA
*
91936038 AATAGAAT
1 AATAAAAT
91936046 AATAAAAT
1 AATAAAAT
**
91936054 AAATTAAAGG
1 -AA-TAAAAT
91936064 AATAAAAT
1 AATAAAAT
91936072 AATAAAAT
1 AATAAAAT
*
91936080 AATAAAAG
1 AATAAAAT
*
91936088 AA-AGAAAG
1 AATA-AAAT
*
91936096 AA-AGAAT
1 AATAAAAT
91936103 -ATAAAAT
1 AATAAAAT
91936110 AATAATAAT
1 AATAA-AAT
91936119 AATAA
1 AATAA
91936124 GGTAAAAGGG
Statistics
Matches: 63, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
6 1 0.02
7 7 0.11
8 39 0.62
9 12 0.19
10 4 0.06
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (8 bp):
AATAAAAT
Found at i:91942993 original size:46 final size:46
Alignment explanation
Indices: 91942933--91943114 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
91942923 TTTGACATGA
* * * * * *
91942933 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
91942979 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
91943025 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91943071 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
91943115 AAAGCACACT
Statistics
Matches: 128, Mismatches: 7, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
45 4 0.03
46 124 0.97
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:91943525 original size:26 final size:26
Alignment explanation
Indices: 91943495--91943604 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
91943485 TGATACAAAT
91943495 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91943521 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91943547 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
91943573 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
91943599 TGATAA
1 TGATAA
91943605 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:91946577 original size:46 final size:46
Alignment explanation
Indices: 91946527--91946702 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
91946517 TATTTGGGCA
91946527 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
91946573 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
91946620 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
91946666 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91946703 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:91946682 original size:93 final size:93
Alignment explanation
Indices: 91946523--91946694 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91946513 TGGATATTTG
* *
91946523 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
91946588 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
91946616 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
91946681 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
91946695 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:91949643 original size:15 final size:15
Alignment explanation
Indices: 91949600--91949663 Score: 80
Period size: 14 Copynumber: 4.4 Consensus size: 15
91949590 GTATCTTGGG
91949600 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
91949615 -TTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
91949629 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
91949644 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
91949658 TTTCTT
1 TTTCTT
91949664 GTTATCTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
14 24 0.56
15 17 0.40
16 2 0.05
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:91952100 original size:46 final size:46
Alignment explanation
Indices: 91952047--91952222 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
91952037 TATTTGGGCA
91952047 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
91952093 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
91952140 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* *
91952186 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
91952223 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 67 0.60
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:91952202 original size:93 final size:93
Alignment explanation
Indices: 91952043--91952214 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
91952033 GGGATATTTG
* *
91952043 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
91952108 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
91952136 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
91952201 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
91952215 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:91953825 original size:33 final size:33
Alignment explanation
Indices: 91953788--91953894 Score: 108
Period size: 33 Copynumber: 3.2 Consensus size: 33
91953778 GTTTATTGTA
91953788 ATCTGAAAAGGGCTCTGGCCCAGGACCACTGTT
1 ATCTGAAAAGGGCTCTGGCCCAGGACCACTGTT
** *** * *
91953821 ATCTGAATAAGGGGCTAAGGCCCA-GTTTATTGTA
1 ATCTGAA-AA-GGGCTCTGGCCCAGGACCACTGTT
*
91953855 ATCTGAAAAGGGCTCTGGCCCAGTACCACTGTT
1 ATCTGAAAAGGGCTCTGGCCCAGGACCACTGTT
*
91953888 ACCTGAA
1 ATCTGAA
91953895 TGGGCTTAGG
Statistics
Matches: 55, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
32 11 0.20
33 19 0.35
34 14 0.25
35 11 0.20
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (33 bp):
ATCTGAAAAGGGCTCTGGCCCAGGACCACTGTT
Found at i:91953856 original size:67 final size:67
Alignment explanation
Indices: 91953748--91953895 Score: 278
Period size: 67 Copynumber: 2.2 Consensus size: 67
91953738 TATGGGCCAT
91953748 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGGA
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGGA
91953813 CC
66 CC
*
91953815 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTA
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGGA
91953880 CC
66 CC
*
91953882 ACTGTTACCTGAAT
1 ACTGTTATCTGAAT
91953896 GGGCTTAGGC
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 79 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (67 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGGA
CC
Found at i:91953878 original size:32 final size:34
Alignment explanation
Indices: 91953754--91953866 Score: 133
Period size: 34 Copynumber: 3.4 Consensus size: 34
91953744 CCATACTGTT
91953754 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
1 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
** *** * *
91953788 ATCTGAA-AA-GGGCTCTGGCCCAGGACCACTGTT
1 ATCTGAATAAGGGGCTAAGGCCCA-GTTTATTGTA
91953821 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
1 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
91953855 ATCTGAA-AAGGG
1 ATCTGAATAAGGG
91953867 CTCTGGCCCA
Statistics
Matches: 62, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
32 11 0.18
33 19 0.31
34 21 0.34
35 11 0.18
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (34 bp):
ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTA
Found at i:91953900 original size:32 final size:32
Alignment explanation
Indices: 91953788--91953908 Score: 84
Period size: 32 Copynumber: 3.7 Consensus size: 32
91953778 GTTTATTGTA
* *
91953788 ATCTGAAAAGGGCTCTGGCCCAGGACCACTGTT
1 ATCTG-AATGGGCTCTGGCCCAGTACCACTGTT
** ** * *
91953821 ATCTGAATAAGGGGCTAAGGCCCAGT-TTATTGTA
1 ATCTGAAT---GGGCTCTGGCCCAGTACCACTGTT
*
91953855 ATCTGAAAAGGGCTCTGGCCCAGTACCACTGTT
1 ATCTG-AATGGGCTCTGGCCCAGTACCACTGTT
*
91953888 ACCTGAATGGGCT-TAGGCCCA
1 ATCTGAATGGGCTCT-GGCCCA
91953909 ATAGGCTTGA
Statistics
Matches: 65, Mismatches: 17, Indels: 13
0.68 0.18 0.14
Matches are distributed among these distances:
31 1 0.02
32 28 0.43
33 13 0.20
34 9 0.14
35 14 0.22
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (32 bp):
ATCTGAATGGGCTCTGGCCCAGTACCACTGTT
Found at i:91957055 original size:29 final size:30
Alignment explanation
Indices: 91957003--91957070 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
91956993 CACCCTTAAA
* * * *
91957003 ATATTTTCACTATTAGTGCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
91957033 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
91957062 AGTATTTAC
1 A-TATTTAC
91957071 TCTTGGGCGA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:91958056 original size:14 final size:15
Alignment explanation
Indices: 91958037--91958092 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
91958027 AATCTTCAAT
91958037 GATATG-CAATCTTA
1 GATATGACAATCTTA
91958051 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
91958068 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
91958086 GATATGA
1 GATATGA
91958093 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:91958063 original size:17 final size:17
Alignment explanation
Indices: 91958043--91958106 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
91958033 CAATGATATG
91958043 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
91958060 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
91958078 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
91958097 CAATCTTAGA
1 CAATCTTAGA
91958107 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.36
18 15 0.36
19 11 0.26
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:91958081 original size:35 final size:37
Alignment explanation
Indices: 91958035--91958113 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
91958025 ATAATCTTCA
91958035 ATGATATGCAATCTTAGATATG-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
91958071 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGA-
1 ATGATATGCAATCTTAGATATGA-ATACAATCTTAGAT
91958107 A-GATATG
1 ATGATATG
91958114 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 19 0.47
36 8 0.20
37 13 0.32
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
Found at i:91958426 original size:12 final size:11
Alignment explanation
Indices: 91958411--91958444 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
91958401 TATTTTTAAT
91958411 TTATTATATATA
1 TTATT-TATATA
91958423 TTATTTATTATA
1 TTATTTA-TATA
91958435 TTATTTATAT
1 TTATTTATAT
91958445 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:91958436 original size:21 final size:21
Alignment explanation
Indices: 91958412--91958520 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
91958402 ATTTTTAATT
91958412 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
91958433 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
91958451 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
91958470 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
91958493 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
91958514 TATTATA
1 TATTATA
91958521 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:91958442 original size:16 final size:16
Alignment explanation
Indices: 91958409--91958439 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91958399 CTTATTTTTA
91958409 ATTTATTATATATATT
1 ATTTATTATATATATT
91958425 ATTTATTATAT-TATT
1 ATTTATTATATATATT
91958440 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:91958587 original size:22 final size:25
Alignment explanation
Indices: 91958545--91958610 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
91958535 CTTACATTTT
* * * *
91958545 TATATTATATATTATAAATATTTCA
1 TATATTATCTATTTTATATATATCA
*
91958570 TTTATTAT-TATTTTATATACTATCA
1 TATATTATCTATTTTATATA-TATCA
91958595 TATATTATCTATTTTA
1 TATATTATCTATTTTA
91958611 AAATTCACTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
24 9 0.26
25 18 0.53
26 7 0.21
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (25 bp):
TATATTATCTATTTTATATATATCA
Found at i:91964418 original size:7 final size:7
Alignment explanation
Indices: 91964402--91964458 Score: 59
Period size: 7 Copynumber: 8.6 Consensus size: 7
91964392 CTTCTATTTC
91964402 AAAA-AA
1 AAAAGAA
91964408 AAAAGAA
1 AAAAGAA
91964415 AAAAG--
1 AAAAGAA
91964420 AAAAGAA
1 AAAAGAA
91964427 AAAGAGAA
1 AAA-AGAA
*
91964435 AAAA-TA
1 AAAAGAA
*
91964441 AATAGAA
1 AAAAGAA
91964448 AAAAGAA
1 AAAAGAA
91964455 AAAA
1 AAAA
91964459 ATGGAGAGGC
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
5 5 0.12
6 8 0.19
7 22 0.52
8 7 0.17
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:91964434 original size:20 final size:19
Alignment explanation
Indices: 91964402--91964458 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 19
91964392 CTTCTATTTC
91964402 AAAA-AAAAAAGAAAAAAG
1 AAAAGAAAAAAGAAAAAAG
*
91964420 AAAAGAAAAAGAGAAAAAAT
1 AAAAGAAAAA-AGAAAAAAG
91964440 AAATAGAAAAAAGAAAAAA
1 AAA-AGAAAAAAGAAAAAA
91964459 ATGGAGAGGC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
18 4 0.11
19 5 0.14
20 19 0.54
21 7 0.20
ACGTcount: A:0.84, C:0.00, G:0.12, T:0.04
Consensus pattern (19 bp):
AAAAGAAAAAAGAAAAAAG
Found at i:91965503 original size:44 final size:44
Alignment explanation
Indices: 91965331--91965510 Score: 168
Period size: 44 Copynumber: 4.1 Consensus size: 44
91965321 CAAAGACACA
* * *
91965331 AGATTTGGCATCCCTATGTTTATAGGGAATAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * **
91965375 AGATCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
* **
91965420 AGCA--TGGCATTCCTGTGTTTATAGGGAACA-AGTTAAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
*
91965463 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
91965507 AGAT
1 AGAT
91965511 CTAACCTCCA
Statistics
Matches: 107, Mismatches: 23, Indels: 12
0.75 0.16 0.08
Matches are distributed among these distances:
42 2 0.02
43 12 0.11
44 79 0.74
45 13 0.12
46 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:91965710 original size:119 final size:119
Alignment explanation
Indices: 91965502--91966095 Score: 1026
Period size: 119 Copynumber: 5.0 Consensus size: 119
91965492 CAGATCGAAG
* *
91965502 ATAGTAGATCTAACCTCCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
91965567 TTACAAGGAACAAATCGAGGACATAGTAGATTTAACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
91965621 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
91965686 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACATTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
91965740 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
91965805 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
91965859 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
91965924 TTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
91965978 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
91966043 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
91966096 CAGACTCAAG
Statistics
Matches: 455, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 455 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:91966124 original size:83 final size:83
Alignment explanation
Indices: 91966019--91966452 Score: 789
Period size: 83 Copynumber: 5.2 Consensus size: 83
91966009 GAAGCAGATC
91966019 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
91966084 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
91966102 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
91966167 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
91966185 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
91966250 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
91966268 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAT-GAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
91966332 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
91966350 CAAGATGGTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
91966415 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* *
91966433 CAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
91966453 ACAAATCGAA
Statistics
Matches: 341, Mismatches: 9, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
82 78 0.23
83 263 0.77
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:91966421 original size:165 final size:166
Alignment explanation
Indices: 91966019--91966452 Score: 789
Period size: 165 Copynumber: 2.6 Consensus size: 166
91966009 GAAGCAGATC
91966019 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
91966084 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA
66 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA
*
91966149 TTGCAGATATGACTCTCAAATGTTCTCAAACAGACT
131 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACT
91966185 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
91966250 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAAT-GAGGACC
66 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA
91966314 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACT
131 TTGCAGACATGACTCTCAAATGTTCTCAAACAGACT
* * * *
91966350 CAAGATGGTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
* *
91966415 AATGTTCTCAAACAGACTCAAGATGATTTGACATCCTT
66 AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTT
91966453 ACAAATCGAA
Statistics
Matches: 260, Mismatches: 8, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
165 138 0.53
166 122 0.47
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (166 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACTCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACA
TTGCAGACATGACTCTCAAATGTTCTCAAACAGACT
Found at i:91966884 original size:35 final size:35
Alignment explanation
Indices: 91966838--91966944 Score: 169
Period size: 35 Copynumber: 3.0 Consensus size: 35
91966828 ATAATCTTCA
91966838 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
91966874 ATGATTGCAATATTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
*
91966909 ATGATTGCAATCTTAGATATAATATACAATCTTAGA
1 ATGATTGCAATCTTAGATAT--GATACAATCTTAGA
91966945 AGATATGATT
Statistics
Matches: 66, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
35 48 0.73
36 5 0.08
37 13 0.20
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:91966889 original size:18 final size:18
Alignment explanation
Indices: 91966838--91966944 Score: 137
Period size: 17 Copynumber: 5.9 Consensus size: 18
91966828 ATAATCTTCA
91966838 ATGATATGCAATCTTAGAT
1 ATGAT-TGCAATCTTAGAT
*
91966857 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
*
91966874 ATGATTGCAATATTAGAT
1 ATGATTGCAATCTTAGAT
*
91966892 ATGA-TACAATCTTAGAT
1 ATGATTGCAATCTTAGAT
91966909 ATGATTGCAATCTTAGAT
1 ATGATTGCAATCTTAGAT
* *
91966927 ATAATATACAATCTTAGA
1 ATGAT-TGCAATCTTAGA
91966945 AGATATGATT
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
17 31 0.40
18 31 0.40
19 15 0.19
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.36
Consensus pattern (18 bp):
ATGATTGCAATCTTAGAT
Found at i:91967265 original size:12 final size:11
Alignment explanation
Indices: 91967250--91967283 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
91967240 TATTTTTAAT
91967250 TTATTATATATA
1 TTATT-TATATA
91967262 TTATTTATTATA
1 TTATTTA-TATA
91967274 TTATTTATAT
1 TTATTTATAT
91967284 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:91967275 original size:21 final size:21
Alignment explanation
Indices: 91967251--91967359 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
91967241 ATTTTTAATT
91967251 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
91967272 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
91967290 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
91967309 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
91967332 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
91967353 TATTATA
1 TATTATA
91967360 CATTATTTTA
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:91967281 original size:16 final size:16
Alignment explanation
Indices: 91967248--91967278 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91967238 CTTATTTTTA
91967248 ATTTATTATATATATT
1 ATTTATTATATATATT
91967264 ATTTATTATAT-TATT
1 ATTTATTATATATATT
91967279 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:91967451 original size:26 final size:25
Alignment explanation
Indices: 91967384--91967453 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
91967374 CTTACATTTT
* *
91967384 TATATTATATATTATAAATAATTTCA
1 TATATTAT-TATTTTAAATAATATCA
* * *
91967410 TTTATTATTATTTTTATATACTATCA
1 TATATTATTA-TTTTAAATAATATCA
91967436 TATATTATCTATTTTAAA
1 TATATTAT-TATTTTAAA
91967454 ATTCACTATT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
25 2 0.06
26 31 0.89
27 2 0.06
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (25 bp):
TATATTATTATTTTAAATAATATCA
Found at i:91970656 original size:46 final size:46
Alignment explanation
Indices: 91970594--91970859 Score: 359
Period size: 46 Copynumber: 5.9 Consensus size: 46
91970584 TTTGACATGA
* * ** * * *
91970594 TGCCATAGTGTCTTTCAACTGTGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
91970640 TGGCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
91970686 TGTCATGGTA----T---CCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
91970725 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
91970771 TGCCATGGTATCTTTCAACCATGGTCTTACGCATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91970817 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
91970860 AAGAGCACAC
Statistics
Matches: 199, Mismatches: 13, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
39 37 0.19
42 1 0.01
43 1 0.01
45 4 0.02
46 156 0.78
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:91970758 original size:85 final size:87
Alignment explanation
Indices: 91970615--91970859 Score: 343
Period size: 85 Copynumber: 2.8 Consensus size: 87
91970605 CTTTCAACTG
* * * *
91970615 TGGTCTTACTCATTTTC-TGTCATGTTGGCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
* *
91970679 ATCAGGTTGTCATGGTA-T-CCA
65 ATCAGGCTGCCATGGTATTACCA
91970700 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
91970765 TCAGGCTGCCATGGTATCTTTCAACCA
66 TCAGGCTGCCATGGTA---TT--ACCA
* *
91970792 TGGTCTTACGCATTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
1 TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
91970857 TCA
66 TCA
91970860 AAGAGCACAC
Statistics
Matches: 144, Mismatches: 8, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
84 4 0.03
85 70 0.49
89 1 0.01
92 69 0.48
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (87 bp):
TGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
TCAGGCTGCCATGGTATTACCA
Found at i:91973321 original size:29 final size:30
Alignment explanation
Indices: 91973271--91973338 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
91973261 CACCCTTAAA
* * *
91973271 ATATTTTCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
91973301 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
91973330 AGTATTTAC
1 A-TATTTAC
91973339 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:91982234 original size:5 final size:5
Alignment explanation
Indices: 91982224--91982255 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
91982214 TTATGTGTTA
91982224 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
91982256 TCACAAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:91982235 original size:9 final size:9
Alignment explanation
Indices: 91982221--91982254 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
91982211 AATTTATGTG
91982221 TTATTTATT
1 TTATTTATT
91982230 TTATTTATT
1 TTATTTATT
91982239 TTATTTTATT
1 TTA-TTTATT
91982249 TTATTT
1 TTATTT
91982255 TTCACAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTATTTATT
Found at i:91982947 original size:33 final size:33
Alignment explanation
Indices: 91982905--91982976 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
91982895 GTCTCATTGT
91982905 TCGTGGGAGACAAGATCAGAATGCTAATGATGA
1 TCGTGGGAGACAAGATCAGAATGCTAATGATGA
91982938 TCGTGGGAGACAAGATCAGAATGCTAATGATGA
1 TCGTGGGAGACAAGATCAGAATGCTAATGATGA
91982971 TCGTGG
1 TCGTGG
91982977 TAGGACACAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.33, C:0.12, G:0.32, T:0.22
Consensus pattern (33 bp):
TCGTGGGAGACAAGATCAGAATGCTAATGATGA
Found at i:91988458 original size:35 final size:35
Alignment explanation
Indices: 91988419--91988491 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
91988409 GGTATGTGAT
91988419 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
91988454 ATATATATTATTTATGTGAGATTGATCTGACGAGA
1 ATATATATTATTTATGTGAGATTGATCTGACGAGA
91988489 ATA
1 ATA
91988492 AAGAATGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.36, C:0.05, G:0.19, T:0.40
Consensus pattern (35 bp):
ATATATATTATTTATGTGAGATTGATCTGACGAGA
Found at i:91990338 original size:5 final size:5
Alignment explanation
Indices: 91990328--91990364 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
91990318 TTGTGTGTTC
91990328 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
91990365 TCACAGTATC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:91999364 original size:31 final size:31
Alignment explanation
Indices: 91999326--91999385 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
91999316 TATGATTTGC
91999326 CTTATTATTTTAATATGATTTGGATGGAAGG
1 CTTATTATTTTAATATGATTTGGATGGAAGG
*
91999357 CTTATTATTTTAATATGATTTGGTTGGAA
1 CTTATTATTTTAATATGATTTGGATGGAA
91999386 ATTGATACTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.48
Consensus pattern (31 bp):
CTTATTATTTTAATATGATTTGGATGGAAGG
Found at i:92000969 original size:6 final size:6
Alignment explanation
Indices: 92000958--92000986 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
92000948 AAATGAATGA
92000958 GATTGT GATTGT GATTGT GATTGT GATTG
1 GATTGT GATTGT GATTGT GATTGT GATTG
92000987 AGAGTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.34, T:0.48
Consensus pattern (6 bp):
GATTGT
Found at i:92000998 original size:18 final size:18
Alignment explanation
Indices: 92000958--92001010 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
92000948 AAATGAATGA
*
92000958 GATTGTGATTGTGATTGT
1 GATTGTGATTGAGATTGT
92000976 GATTGTGATTGAGAGTTGT
1 GATTGTGATTGAGA-TTGT
*
92000995 -ATTG-AATTGA-ATTGT
1 GATTGTGATTGAGATTGT
92001010 G
1 G
92001011 TGACAGTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
15 4 0.13
16 1 0.03
17 5 0.16
18 17 0.55
19 4 0.13
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.45
Consensus pattern (18 bp):
GATTGTGATTGAGATTGT
Found at i:92001816 original size:51 final size:51
Alignment explanation
Indices: 92001753--92001853 Score: 202
Period size: 51 Copynumber: 2.0 Consensus size: 51
92001743 AATGACTTGA
92001753 ATTGATTTTACCATTGATATTATATACCTTGTGCCAATTTAATAATGCATT
1 ATTGATTTTACCATTGATATTATATACCTTGTGCCAATTTAATAATGCATT
92001804 ATTGATTTTACCATTGATATTATATACCTTGTGCCAATTTAATAATGCAT
1 ATTGATTTTACCATTGATATTATATACCTTGTGCCAATTTAATAATGCAT
92001854 CTCATTTTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.45
Consensus pattern (51 bp):
ATTGATTTTACCATTGATATTATATACCTTGTGCCAATTTAATAATGCATT
Found at i:92007959 original size:2 final size:2
Alignment explanation
Indices: 92007952--92007992 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
92007942 TTCAGCCTAT
92007952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
92007993 TAGCTGATGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:92008329 original size:66 final size:67
Alignment explanation
Indices: 92008200--92008329 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
92008190 GGGATGTATC
*
92008200 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACCAAGTGA
92008265 AGGACA
62 AGGACA
* *
92008271 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACCAAGTG
92008330 TTCACCATGT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
66 24 0.44
67 9 0.16
68 1 0.02
71 21 0.38
ACGTcount: A:0.34, C:0.16, G:0.30, T:0.20
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACCAAGTGAAGGA
CA
Found at i:92010727 original size:18 final size:18
Alignment explanation
Indices: 92010704--92010739 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
92010694 CTAGGTTTTA
92010704 GCATACATAATTTAATCT
1 GCATACATAATTTAATCT
92010722 GCATACATAATTTAATCT
1 GCATACATAATTTAATCT
92010740 AACTAATTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (18 bp):
GCATACATAATTTAATCT
Found at i:92011814 original size:18 final size:18
Alignment explanation
Indices: 92011793--92011839 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
92011783 GTATCTATTT
92011793 TTTATAAA-TTTTTTATAA
1 TTTATAAATTTTTTTA-AA
**
92011811 TTTATCTATTTTTTTAAA
1 TTTATAAATTTTTTTAAA
*
92011829 TGTATAAATTT
1 TTTATAAATTT
92011840 CAAATTTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TTTATAAATTTTTTTAAA
Found at i:92011918 original size:66 final size:65
Alignment explanation
Indices: 92011851--92011972 Score: 151
Period size: 65 Copynumber: 1.9 Consensus size: 65
92011841 AAATTTTTTA
*
92011851 AAATTTTATATAAT-TTGTTTCTAGAATTTCA-ATATTTTTATA-ACTTTTTATCATTTTTATAT
1 AAATTTTATAAAATATT-TTTCTAGAATTTCATATATTTTTA-ACACTTTTTAT-ATTTTTATAT
92011913 CTT
63 CTT
* * * *
92011916 AAATTTTTTAAAATATTTTTTTAGAATTTTATATATTTTTAACATTTTTTATATTTT
1 AAATTTTATAAAATATTTTTCTAGAATTTCATATATTTTTAACACTTTTTATATTTT
92011973 ATAAAATTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
65 30 0.61
66 19 0.39
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (65 bp):
AAATTTTATAAAATATTTTTCTAGAATTTCATATATTTTTAACACTTTTTATATTTTTATATCTT
Found at i:92011954 original size:18 final size:18
Alignment explanation
Indices: 92011928--92011972 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
92011918 ATTTTTTAAA
*
92011928 ATATTTTTTTAGA-ATTTT
1 ATATATTTTTA-ACATTTT
92011946 ATATATTTTTAACATTTT
1 ATATATTTTTAACATTTT
*
92011964 TTATATTTT
1 ATATATTTT
92011973 ATAAAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
ATATATTTTTAACATTTT
Found at i:92022202 original size:20 final size:20
Alignment explanation
Indices: 92022179--92022220 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
92022169 TTACAGACTG
92022179 AAATTAAGGAATTTTTTGGA
1 AAATTAAGGAATTTTTTGGA
92022199 AAATTAAGGAATTTTTTGGA
1 AAATTAAGGAATTTTTTGGA
92022219 AA
1 AA
92022221 GCTAAGGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.00, G:0.19, T:0.38
Consensus pattern (20 bp):
AAATTAAGGAATTTTTTGGA
Found at i:92022226 original size:20 final size:20
Alignment explanation
Indices: 92022183--92022229 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
92022173 AGACTGAAAT
*
92022183 TAAGGAATTTTTTGGAAAAT
1 TAAGGAATTTTTTGGAAAAC
*
92022203 TAAGGAATTTTTTGGAAAGC
1 TAAGGAATTTTTTGGAAAAC
92022223 TAAGGAA
1 TAAGGAA
92022230 CCTACAGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.40, C:0.02, G:0.23, T:0.34
Consensus pattern (20 bp):
TAAGGAATTTTTTGGAAAAC
Found at i:92026111 original size:563 final size:564
Alignment explanation
Indices: 92024571--92026266 Score: 3367
Period size: 564 Copynumber: 3.0 Consensus size: 564
92024561 TCAAGTATGC
92024571 ATAGACTAAGAACACAATGCTTGCTTTGCCTTTTACATCCTTCATTTTCTAAATTCTCTTGAAGT
1 ATAGACTAAGAACACAATGCTTGCTTTGCCTTTTACATCCTTCATTTTCTAAATTCTCTTGAAGT
92024636 AAAAGCTAGACATAGTGGAGAAGGATGAAGTTCATGAAGTTGAGTAGAAGGAGTTGAAAGTTCCT
66 AAAAGCTAGACATAGTGGAGAAGGATGAAGTTCATGAAGTTGAGTAGAAGGAGTTGAAAGTTCCT
92024701 CAAAACGAAAAAAAGGGAAAGCATGCTACAAATGGCACTAAAGTGGATGCTTCGATACTAATAAA
131 CAAAACGAAAAAAAGGGAAAGCATGCTACAAATGGCACTAAAGTGGATGCTTCGATACTAATAAA
92024766 GATGATGAGCTACACTAGTTTTTCCTCTAGTTGAAACTAGTTCAACATTTTCTAGAGTTCTATGT
196 GATGATGAGCTACACTAGTTTTTCCTCTAGTTGAAACTAGTTCAACATTTTCTAGAGTTCTATGT
92024831 GTTGCATAGGTTAGATTTATAGAGCATTTGGATGAAGAAGTTATATGTCTTGAAAAGAATATCTA
261 GTTGCATAGGTTAGATTTATAGAGCATTTGGATGAAGAAGTTATATGTCTTGAAAAGAATATCTA
92024896 GTATCATGAGCAACAATTAAAGCTTCTCCAATGTATATGACACGTAAGGCTGAAGTTAGAAAATT
326 GTATCATGAGCAACAATTAAAGCTTCTCCAATGTATATGACACGTAAGGCTGAAGTTAGAAAATT
92024961 TTTTTAGAGGGGAAATTTAATTGTAACTTTTACAGTAGTAAAAATATAATTTCACTATTTTAATA
391 TTTTTAGAGGGGAAATTTAATTGTAACTTTTACAGTAGTAAAAATATAATTTCACTATTTTAATA
92025026 GCCTCTATATTTATAATTTTTAAAATATTATTTTTTTTAATTTTTAGGTGGGCCAAAGTGCAATT
456 GCCTCTATATTTATAATTTTTAAAATATTATTTTTTTTAATTTTTAGGTGGGCCAAAGTGCAATT
92025091 TGATTTTTACTAATTTAAAATTTTAAAAATTTCAAAGGGTTTAA
521 TGATTTTTACTAATTTAAAATTTTAAAAATTTCAAAGGGTTTAA
92025135 ATAGACTAAGAACACAATGCTTGCTTTGCCTTTTACATCCTTCATTTTCTAAATTCTCTTGAAGT
1 ATAGACTAAGAACACAATGCTTGCTTTGCCTTTTACATCCTTCATTTTCTAAATTCTCTTGAAGT
92025200 AAAAGCTAGACATAGTGGAGAAGGATGAAGTTCATGAAGTTGAGTAGAAGGAGTTGAAAGTTCCT
66 AAAAGCTAGACATAGTGGAGAAGGATGAAGTTCATGAAGTTGAGTAGAAGGAGTTGAAAGTTCCT
92025265 CAAAACGAAAAAAAGGGAAAGCATGCTACAAATGGCACTAAAGTGGATGCTTCGATACTAATAAA
131 CAAAACGAAAAAAAGGGAAAGCATGCTACAAATGGCACTAAAGTGGATGCTTCGATACTAATAAA
92025330 GATGATGAGCTACACTAGTTTTTCCTCTAGTTGAAACTAGTTCAACATTTTCTAGAGTTCTATGT
196 GATGATGAGCTACACTAGTTTTTCCTCTAGTTGAAACTAGTTCAACATTTTCTAGAGTTCTATGT
92025395 GTTGCATAGGTTAGATTTATAGAGCATTTGGATGAAGAAGTTATATGTCTTGAAAAGAATATCTA
261 GTTGCATAGGTTAGATTTATAGAGCATTTGGATGAAGAAGTTATATGTCTTGAAAAGAATATCTA
92025460 GTATCATGAGCAACAATTAAAGCTTCTCCAATGTATATGACACGTAAGGCTGAAGTTAGAAAATT
326 GTATCATGAGCAACAATTAAAGCTTCTCCAATGTATATGACACGTAAGGCTGAAGTTAGAAAATT
92025525 TTTTTAGAGGGGAAATTTAATTGTAACTTTTACAGTAGTAAAAATATAATTTCACTATTTTAATA
391 TTTTTAGAGGGGAAATTTAATTGTAACTTTTACAGTAGTAAAAATATAATTTCACTATTTTAATA
92025590 GCCTCTATATTTATAATTTTTAAAATATTA-TTTTTTTAATTTTTAGGTGGGCCAAAGTGCAATT
456 GCCTCTATATTTATAATTTTTAAAATATTATTTTTTTTAATTTTTAGGTGGGCCAAAGTGCAATT
92025654 TGATTTTTACTAATTTAAAATTTTAAAAATTTCAAAGGGTTTAA
521 TGATTTTTACTAATTTAAAATTTTAAAAATTTCAAAGGGTTTAA
92025698 ATAGACTAAGAACACAATGCTTGCTTTGCCTTTTACATCCTTCATTTTCTAAATTCTCTTGAAGT
1 ATAGACTAAGAACACAATGCTTGCTTTGCCTTTTACATCCTTCATTTTCTAAATTCTCTTGAAGT
92025763 AAAAGCTAGACATAGTGGAGAAGGATGAAGTTCATGAAGTTGAGTAGAAGGAGTTGAAAGTTCCT
66 AAAAGCTAGACATAGTGGAGAAGGATGAAGTTCATGAAGTTGAGTAGAAGGAGTTGAAAGTTCCT
92025828 CAAAACGAAAAAAAGGGAAAGCATGCTACAAATGGCACTAAAGTGGATGCTTCGATACTAATAAA
131 CAAAACGAAAAAAAGGGAAAGCATGCTACAAATGGCACTAAAGTGGATGCTTCGATACTAATAAA
92025893 GATGATGAGCTACACTAGTTTTTCCTCTAGTTGAAACTAGTTCAACATTTTCTAGAGTTCTATGT
196 GATGATGAGCTACACTAGTTTTTCCTCTAGTTGAAACTAGTTCAACATTTTCTAGAGTTCTATGT
92025958 GTTGCATAGGTTAGATTTATAGAGCATTTGGATGAAGAAGTTATATGTCTTGAAAAGAATATCTA
261 GTTGCATAGGTTAGATTTATAGAGCATTTGGATGAAGAAGTTATATGTCTTGAAAAGAATATCTA
92026023 GTATCATGAGCAACAATTAAAGCTTCTCCAATGTATATGACACGTAAGGCTGAAGTTAGAAAATT
326 GTATCATGAGCAACAATTAAAGCTTCTCCAATGTATATGACACGTAAGGCTGAAGTTAGAAAATT
92026088 TTTTTAGAGGGGAAATTTAATTGTAACTTTTACAGTAGTAAAAATATAATTTCACTATTTTAATA
391 TTTTTAGAGGGGAAATTTAATTGTAACTTTTACAGTAGTAAAAATATAATTTCACTATTTTAATA
* *
92026153 GTCTCTATATTTATAATTTTTAAAATATTATTTTTTTTAATTTTTAGGTGGGCCAAAGTGTAATT
456 GCCTCTATATTTATAATTTTTAAAATATTATTTTTTTTAATTTTTAGGTGGGCCAAAGTGCAATT
92026218 TGATTTTTACTAATTTAAAATTTTAAAAATTTCAAAGGGTTTAA
521 TGATTTTTACTAATTTAAAATTTTAAAAATTTCAAAGGGTTTAA
92026262 ATAGA
1 ATAGA
92026267 AATTTTTTAT
Statistics
Matches: 1129, Mismatches: 2, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
563 562 0.50
564 567 0.50
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (564 bp):
ATAGACTAAGAACACAATGCTTGCTTTGCCTTTTACATCCTTCATTTTCTAAATTCTCTTGAAGT
AAAAGCTAGACATAGTGGAGAAGGATGAAGTTCATGAAGTTGAGTAGAAGGAGTTGAAAGTTCCT
CAAAACGAAAAAAAGGGAAAGCATGCTACAAATGGCACTAAAGTGGATGCTTCGATACTAATAAA
GATGATGAGCTACACTAGTTTTTCCTCTAGTTGAAACTAGTTCAACATTTTCTAGAGTTCTATGT
GTTGCATAGGTTAGATTTATAGAGCATTTGGATGAAGAAGTTATATGTCTTGAAAAGAATATCTA
GTATCATGAGCAACAATTAAAGCTTCTCCAATGTATATGACACGTAAGGCTGAAGTTAGAAAATT
TTTTTAGAGGGGAAATTTAATTGTAACTTTTACAGTAGTAAAAATATAATTTCACTATTTTAATA
GCCTCTATATTTATAATTTTTAAAATATTATTTTTTTTAATTTTTAGGTGGGCCAAAGTGCAATT
TGATTTTTACTAATTTAAAATTTTAAAAATTTCAAAGGGTTTAA
Found at i:92035899 original size:2 final size:2
Alignment explanation
Indices: 92035892--92035934 Score: 77
Period size: 2 Copynumber: 21.0 Consensus size: 2
92035882 GTTTGACTAA
92035892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
92035935 TCATAAAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 38 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92038112 original size:7 final size:7
Alignment explanation
Indices: 92038100--92038126 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
92038090 CATGGCCTTT
92038100 TTTTTTC
1 TTTTTTC
92038107 TTTTTTC
1 TTTTTTC
92038114 TTTTTTC
1 TTTTTTC
92038121 TTTTTT
1 TTTTTT
92038127 GTTTAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTTTC
Found at i:92045874 original size:24 final size:24
Alignment explanation
Indices: 92045846--92045893 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
92045836 AATATGAAAG
92045846 AAAGAAAATTTGAAAACATCACTA
1 AAAGAAAATTTGAAAACATCACTA
*
92045870 AAAGAAAATTTGAAAACATGACTA
1 AAAGAAAATTTGAAAACATCACTA
92045894 TACAAACAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.58, C:0.10, G:0.10, T:0.21
Consensus pattern (24 bp):
AAAGAAAATTTGAAAACATCACTA
Found at i:92045962 original size:26 final size:25
Alignment explanation
Indices: 92045904--92045962 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
92045894 TACAAACAAT
* *
92045904 ATAAAAATTTTAAAACAAGTAATAG
1 ATAAAAAGTTTAAAACAAGTAAAAG
* *
92045929 ATATAAAAGTTTAAAATAGGTAAAAAG
1 ATA-AAAAGTTTAAAACAAGT-AAAAG
92045956 ATAAAAA
1 ATAAAAA
92045963 TAAATAATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.11
26 18 0.64
27 7 0.25
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.25
Consensus pattern (25 bp):
ATAAAAAGTTTAAAACAAGTAAAAG
Found at i:92046040 original size:3 final size:3
Alignment explanation
Indices: 92046032--92046060 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
92046022 AAAATAATTC
92046032 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
92046061 TGTTGTAGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:92046364 original size:30 final size:30
Alignment explanation
Indices: 92046318--92046376 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
92046308 CCAACTCCCA
92046318 ACTCCACTAGCAACACTTGCTCCACCACCT
1 ACTCCACTAGCAACACTTGCTCCACCACCT
* *
92046348 ACTCCATTAGCCACACTTGCTCCACCACC
1 ACTCCACTAGCAACACTTGCTCCACCACC
92046377 ACTTGTACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.25, C:0.47, G:0.07, T:0.20
Consensus pattern (30 bp):
ACTCCACTAGCAACACTTGCTCCACCACCT
Found at i:92046938 original size:25 final size:26
Alignment explanation
Indices: 92046910--92046980 Score: 92
Period size: 25 Copynumber: 2.8 Consensus size: 26
92046900 ATTCTAAATT
*
92046910 CTATATTACGTATATATATATT-ATA
1 CTATATTATGTATATATATATTAATA
* *
92046935 CTATTTTATGTATATATCT-TTAATA
1 CTATATTATGTATATATATATTAATA
*
92046960 CTATATTATTTATATATATAT
1 CTATATTATGTATATATATAT
92046981 ATTTTTTTTC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 2 0.05
25 35 0.92
26 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.54
Consensus pattern (26 bp):
CTATATTATGTATATATATATTAATA
Found at i:92046983 original size:14 final size:14
Alignment explanation
Indices: 92046920--92046984 Score: 55
Period size: 14 Copynumber: 4.6 Consensus size: 14
92046910 CTATATTACG
*
92046920 TATATATATAT-TA
1 TATATATTTATATA
*
92046933 TACTAT-TTTATGTA
1 TA-TATATTTATATA
*
92046947 TATATCTTTA-ATA
1 TATATATTTATATA
92046960 CTATATTATTTATATA
1 -TATA-TATTTATATA
92046976 TATATATTT
1 TATATATTT
92046985 TTTTTCTACA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
13 11 0.26
14 20 0.47
15 9 0.21
16 3 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (14 bp):
TATATATTTATATA
Found at i:92047027 original size:22 final size:23
Alignment explanation
Indices: 92046997--92047063 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 23
92046987 TTTCTACATG
*
92046997 TTATCTTATGTATATATTTTA-A
1 TTATATTATGTATATATTTTACA
*
92047019 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
92047044 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
92047064 TTTTTCATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 11 0.30
23 6 0.16
24 8 0.22
25 12 0.32
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:92047146 original size:25 final size:24
Alignment explanation
Indices: 92047118--92047173 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
92047108 GTTATATTTT
*
92047118 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
92047143 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
92047166 CACTATTA
1 CACTATTA
92047174 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:92060183 original size:16 final size:16
Alignment explanation
Indices: 92060160--92060196 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
92060150 AGGGCATCTT
*
92060160 AAAA-AAAAGAGAAAG
1 AAAAGAAAAGAAAAAG
92060175 AAAAGAAAAGAAAAAG
1 AAAAGAAAAGAAAAAG
92060191 AAAAGA
1 AAAAGA
92060197 GAGAGGGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 4 0.20
16 16 0.80
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAGAAAAAG
Found at i:92060194 original size:11 final size:11
Alignment explanation
Indices: 92060163--92060196 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
92060153 GCATCTTAAA
92060163 AAAAAGAGAAAG
1 AAAAAGA-AAAG
92060175 -AAAAGAAAAG
1 AAAAAGAAAAG
92060185 AAAAAGAAAAG
1 AAAAAGAAAAG
92060196 A
1 A
92060197 GAGAGGGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.19
11 17 0.81
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Done.