Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 306 of 325
Found at i:93470607 original size:54 final size:54
Alignment explanation
Indices: 93470520--93470707 Score: 322
Period size: 54 Copynumber: 3.5 Consensus size: 54
93470510 CGGCAAACTA
93470520 ATTGCAAAGGTTAATATGGGAACTTTGATTGCAAAGTTTAATATGTCAACTTGG
1 ATTGCAAAGGTTAATATGGGAACTTTGATTGCAAAGTTTAATATGTCAACTTGG
* *
93470574 ATTGGAAAGGTTAATATGGGAGCTTTGATTGCAAAGTTTAATATGTCAACTTGG
1 ATTGCAAAGGTTAATATGGGAACTTTGATTGCAAAGTTTAATATGTCAACTTGG
* * * *
93470628 ATTGGAAAGGTTAATATGGGAGCTTTGATTGCAAAGTTTAATATCTCAACTTTG
1 ATTGCAAAGGTTAATATGGGAACTTTGATTGCAAAGTTTAATATGTCAACTTGG
93470682 ATTGCAAAGGTTAATATGGGAACTTT
1 ATTGCAAAGGTTAATATGGGAACTTT
93470708 TATTTATTTA
Statistics
Matches: 128, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 128 1.00
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.36
Consensus pattern (54 bp):
ATTGCAAAGGTTAATATGGGAACTTTGATTGCAAAGTTTAATATGTCAACTTGG
Found at i:93471222 original size:2 final size:2
Alignment explanation
Indices: 93471215--93471244 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
93471205 CAAGTGTATG
93471215 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93471245 AAGCTTATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:93480321 original size:30 final size:30
Alignment explanation
Indices: 93480285--93480347 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
93480275 ACTTATTTTA
93480285 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
* *
93480315 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
93480345 TTG
1 TTG
93480348 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:93480497 original size:12 final size:12
Alignment explanation
Indices: 93480474--93480507 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
93480464 TATATTTTTT
93480474 AAAATT-ATATA
1 AAAATTAATATA
93480485 AAAATTAATATA
1 AAAATTAATATA
93480497 AAAATTAATAT
1 AAAATTAATAT
93480508 GGGCGGGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:93482196 original size:27 final size:25
Alignment explanation
Indices: 93482152--93482238 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 25
93482142 ACTCTTTAAA
*
93482152 TATATAAACAATTCAAAATAAATAATG
1 TATA-AAAAAATT-AAAATAAATAATG
* * *
93482179 TGTAAAAAAAGTTTAAAATACATAATA
1 TATAAAAAAA--TTAAAATAAATAATG
* * *
93482206 TATGAAAATATTAAAGTAAATAATG
1 TATAAAAAAATTAAAATAAATAATG
93482231 TATAAAAA
1 TATAAAAA
93482239 TTTGAAATGA
Statistics
Matches: 47, Mismatches: 11, Indels: 6
0.73 0.17 0.09
Matches are distributed among these distances:
25 19 0.40
26 5 0.11
27 21 0.45
28 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (25 bp):
TATAAAAAAATTAAAATAAATAATG
Found at i:93482219 original size:25 final size:24
Alignment explanation
Indices: 93482150--93482278 Score: 91
Period size: 25 Copynumber: 5.2 Consensus size: 24
93482140 AAACTCTTTA
* *
93482150 AATATATAAACAATTCAAAATAAAT
1 AATATATAAA-AATTTAAAATACAT
* *
93482175 AATGTGTAAAAAAAGTTTAAAATACAT
1 AA--TATATAAAAA-TTTAAAATACAT
* * *
93482202 AATATATGAAAATATTAAAGTAAAT
1 AATATATAAAAAT-TTAAAATACAT
* *
93482227 AATGTATAAAAATTTGAAATGAACAT
1 AATATATAAAAATTTAAAAT--ACAT
*
93482253 --TATATAAAAATTTAAAATAGAT
1 AATATATAAAAATTTAAAATACAT
93482275 AATA
1 AATA
93482279 ACAAAAAATG
Statistics
Matches: 79, Mismatches: 17, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
22 3 0.04
24 24 0.30
25 29 0.37
26 5 0.06
27 18 0.23
ACGTcount: A:0.59, C:0.03, G:0.07, T:0.31
Consensus pattern (24 bp):
AATATATAAAAATTTAAAATACAT
Found at i:93482388 original size:34 final size:33
Alignment explanation
Indices: 93482362--93482425 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 33
93482352 TAATATTAGT
93482362 ATATAAATAG-AAATAAAAATATAATAAATAGA
1 ATATAAATAGAAAATAAAAATATAATAAATAGA
93482394 ATATAAATAGATAAATAAAAAT-TAGATAAATA
1 ATATAAATAGA-AAATAAAAATATA-ATAAATA
93482426 ATAATAGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 10 0.34
33 2 0.07
34 17 0.59
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (33 bp):
ATATAAATAGAAAATAAAAATATAATAAATAGA
Found at i:93482397 original size:40 final size:41
Alignment explanation
Indices: 93482335--93482430 Score: 97
Period size: 40 Copynumber: 2.3 Consensus size: 41
93482325 AATATATAAG
* * * * *
93482335 AAAAATAATAATGAAAATAATATTAGTATATAAATAGAAAT
1 AAAAATAATAATGAAAAGAATATAAATAGATAAATAAAAAT
93482376 AAAAAT-ATAAT-AAATAGAATATAAATAGATAAATAAAAATT
1 AAAAATAATAATGAAA-AGAATATAAATAGATAAATAAAAA-T
93482417 AGATAAATAATAAT
1 A-A-AAATAATAAT
93482431 AGTATTAGAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
39 3 0.07
40 24 0.53
41 8 0.18
42 1 0.02
43 4 0.09
44 5 0.11
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (41 bp):
AAAAATAATAATGAAAAGAATATAAATAGATAAATAAAAAT
Found at i:93485911 original size:26 final size:26
Alignment explanation
Indices: 93485882--93485985 Score: 181
Period size: 26 Copynumber: 4.0 Consensus size: 26
93485872 GATAATAGGT
93485882 TAGGTTAGGTAAATGTTTCATGATAA
1 TAGGTTAGGTAAATGTTTCATGATAA
*
93485908 TAGGTTAGGTAAATGTTCCATGATAA
1 TAGGTTAGGTAAATGTTTCATGATAA
*
93485934 TGGGTTAGGTAAATGTTTCATGATAA
1 TAGGTTAGGTAAATGTTTCATGATAA
*
93485960 TGGGTTAGGTAAATGTTTCATGATAA
1 TAGGTTAGGTAAATGTTTCATGATAA
93485986 GAATATCATG
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TAGGTTAGGTAAATGTTTCATGATAA
Found at i:93488007 original size:135 final size:137
Alignment explanation
Indices: 93487764--93488048 Score: 511
Period size: 135 Copynumber: 2.1 Consensus size: 137
93487754 GAGTAGTCTC
93487764 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
93487829 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTATC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
*
93487893 ACTGTTA
131 ACTATTA
*
93487900 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
93487964 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93488029 ACTATTA
131 ACTATTA
**
93488036 CCTGAATGGGCTT
1 CCCAAATGGGCTT
93488049 AGGCCCAATG
Statistics
Matches: 143, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
135 95 0.66
136 48 0.34
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTATTA
Found at i:93491766 original size:26 final size:26
Alignment explanation
Indices: 93491704--93491812 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
93491694 TGATACAAAT
93491704 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93491729 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93491755 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
93491781 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
93491807 TGATAA
1 TGATAA
93491813 GAATTCATGT
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 21 0.26
26 59 0.74
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:93493835 original size:134 final size:137
Alignment explanation
Indices: 93493594--93493877 Score: 520
Period size: 134 Copynumber: 2.1 Consensus size: 137
93493584 GAGTAGTCTC
93493594 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
93493659 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCT-TGGCCCAGTA-C
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93493722 ACTGTTA
131 ACTGTTA
*
93493729 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
93493793 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93493858 ACTGTTA
131 ACTGTTA
**
93493865 CCTGAATGGGCTT
1 CCCAAATGGGCTT
93493878 AGGCCCAATG
Statistics
Matches: 144, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
134 95 0.66
135 30 0.21
136 19 0.13
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:93500323 original size:16 final size:16
Alignment explanation
Indices: 93500302--93500333 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
93500292 ATCCACTACA
*
93500302 AAAAATAAAATTAAAT
1 AAAAATAAAATCAAAT
93500318 AAAAATAAAATCAAAT
1 AAAAATAAAATCAAAT
93500334 TTTCTTTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (16 bp):
AAAAATAAAATCAAAT
Found at i:93500914 original size:17 final size:17
Alignment explanation
Indices: 93500892--93500926 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
93500882 AAACGAAAAC
*
93500892 AAATTATTATAGTTTTA
1 AAATTAATATAGTTTTA
*
93500909 AAATTAATATATTTTTA
1 AAATTAATATAGTTTTA
93500926 A
1 A
93500927 TATATAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
AAATTAATATAGTTTTA
Found at i:93500970 original size:30 final size:30
Alignment explanation
Indices: 93500936--93500999 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
93500926 ATATATAGTT
* * *
93500936 TAATATATTATATATTAATATTATTTGATA
1 TAATATATTAGAAATTAATATGATTTGATA
*
93500966 TAATATATTAGAAATTGATATGATTTGATA
1 TAATATATTAGAAATTAATATGATTTGATA
93500996 TAAT
1 TAAT
93501000 TAAAATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (30 bp):
TAATATATTAGAAATTAATATGATTTGATA
Found at i:93500989 original size:25 final size:23
Alignment explanation
Indices: 93500940--93501005 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
93500930 ATAGTTTAAT
* * *
93500940 ATATTATATATTAATATTATTTG
1 ATATAATATATTAAAATTATATG
93500963 ATATAATATATTAGAAATTGATATG
1 ATATAATATATTA-AAATT-ATATG
* *
93500988 ATTTGATATAATTAAAAT
1 ATATAATAT-ATTAAAAT
93501006 ATTTATGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 12 0.34
24 4 0.11
25 15 0.43
26 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (23 bp):
ATATAATATATTAAAATTATATG
Found at i:93504533 original size:23 final size:22
Alignment explanation
Indices: 93504487--93504534 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
93504477 AATTTACTGT
93504487 TTATTTTCAAGTTATTTTGTTA
1 TTATTTTCAAGTTATTTTGTTA
*
93504509 TTATTTTCCA-TTATGTATTGTTA
1 TTATTTTCAAGTTAT-T-TTGTTA
93504532 TTA
1 TTA
93504535 ATTACAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 9 0.39
ACGTcount: A:0.23, C:0.06, G:0.08, T:0.62
Consensus pattern (22 bp):
TTATTTTCAAGTTATTTTGTTA
Found at i:93504636 original size:22 final size:23
Alignment explanation
Indices: 93504596--93504638 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93504586 ATCTTTTATA
* *
93504596 TATGTATATGTATTTTATATACT
1 TATGTATATATATTATATATACT
93504619 TATGTAT-TATATTATATATA
1 TATGTATATATATTATATATA
93504639 TTTTTATACG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.56
Consensus pattern (23 bp):
TATGTATATATATTATATATACT
Found at i:93504736 original size:22 final size:23
Alignment explanation
Indices: 93504711--93504753 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93504701 TGGTATTCTG
*
93504711 ATATTTTGATAC-CATATTATAT
1 ATATTTTCATACGCATATTATAT
*
93504733 ATATTTTCATACGTATATTAT
1 ATATTTTCATACGCATATTAT
93504754 GTACATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.51
Consensus pattern (23 bp):
ATATTTTCATACGCATATTATAT
Found at i:93505079 original size:24 final size:24
Alignment explanation
Indices: 93505012--93505080 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 24
93505002 AATTAATAGT
*
93505012 TATTCTTTTAATATTACTATTATC
1 TATTCTTTTAATATTATTATTATC
* *
93505036 T-TTTTTTTGAGATATATATTA-TATG
1 TATTCTTTT-A-ATAT-TATTATTATC
93505061 TATTCTTTTAATATGTATTA
1 TATTCTTTTAATAT-TATTA
93505081 CATATATGTG
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
23 6 0.17
24 11 0.31
25 9 0.25
26 10 0.28
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (24 bp):
TATTCTTTTAATATTATTATTATC
Found at i:93506063 original size:26 final size:26
Alignment explanation
Indices: 93506034--93506141 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
93506024 TGATACAAAT
93506034 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
93506060 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93506086 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93506112 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
93506138 TGAT
1 TGAT
93506142 TAGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:93507020 original size:24 final size:26
Alignment explanation
Indices: 93506982--93507088 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
93506972 TGATACAAAT
*
93506982 TGATAATAGGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93507007 TGATAAT-GGTTAGGTAAATG-TTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93507031 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93507057 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
93507083 TGATAA
1 TGATAA
93507089 GAATTTCATG
Statistics
Matches: 80, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
24 24 0.30
25 20 0.25
26 36 0.45
ACGTcount: A:0.34, C:0.04, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:93508595 original size:26 final size:26
Alignment explanation
Indices: 93508566--93508618 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
93508556 TTTACAGTTT
93508566 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
93508592 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
93508618 T
1 T
93508619 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:93509109 original size:136 final size:137
Alignment explanation
Indices: 93508864--93509137 Score: 532
Period size: 136 Copynumber: 2.0 Consensus size: 137
93508854 GAGTAGTCTC
93508864 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
93508929 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93508994 ACTGTTA
131 ACTGTTA
*
93509001 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
93509065 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93509130 ACTGTTA
131 ACTGTTA
93509137 C
1 C
93509138 TGAATGGGCT
Statistics
Matches: 136, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
136 116 0.85
137 20 0.15
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:93513425 original size:22 final size:22
Alignment explanation
Indices: 93513391--93513441 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
93513381 ATGAAGCAAC
93513391 CCCATA-CCCCACTACAACAG-
1 CCCATACCCCCACTACAACAGT
93513411 CCTCATACCCCCACTACAACAGT
1 CC-CATACCCCCACTACAACAGT
93513434 CCCATACC
1 CCCATACC
93513442 GTCACATGCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 2 0.07
21 4 0.14
22 20 0.71
23 2 0.07
ACGTcount: A:0.31, C:0.51, G:0.04, T:0.14
Consensus pattern (22 bp):
CCCATACCCCCACTACAACAGT
Found at i:93516857 original size:26 final size:26
Alignment explanation
Indices: 93516819--93516886 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
93516809 TTCAGAAATC
* * * *
93516819 ATTTTATGTCTTGAAA-TTAATCTAT
1 ATTTTTTGTCTTGAAAGATAATCAAA
93516844 ATGTTTTTGTCTTGAAAGATAATCAAA
1 AT-TTTTTGTCTTGAAAGATAATCAAA
*
93516871 ATTTTATGTCTTGAAA
1 ATTTTTTGTCTTGAAA
93516887 CACTACATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.06
26 26 0.72
27 8 0.22
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (26 bp):
ATTTTTTGTCTTGAAAGATAATCAAA
Found at i:93517873 original size:57 final size:57
Alignment explanation
Indices: 93517775--93517918 Score: 247
Period size: 56 Copynumber: 2.6 Consensus size: 57
93517765 AAAAGAACAG
*
93517775 AAAAAGAAGGGTTTCTTTTCTCC-TGTCATACTGGGTGCATAATATGCCGAGGACGA
1 AAAAAGAAGGGTTTCTTTTTTCCTTGTCATACTGGGTGCATAATATGCCGAGGACGA
*
93517831 AAAAAGAAGGGTTTCTTTTTTCCTTGTCATACTGGGTGCATAATATGCCGAGGATGA
1 AAAAAGAAGGGTTTCTTTTTTCCTTGTCATACTGGGTGCATAATATGCCGAGGACGA
*
93517888 AAAAA-AAGGGTTTCTTTTTTCCTTCTCATAC
1 AAAAAGAAGGGTTTCTTTTTTCCTTGTCATAC
93517919 CAAAATATGA
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
56 47 0.56
57 37 0.44
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (57 bp):
AAAAAGAAGGGTTTCTTTTTTCCTTGTCATACTGGGTGCATAATATGCCGAGGACGA
Found at i:93522924 original size:22 final size:23
Alignment explanation
Indices: 93522892--93522948 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
93522882 AATATAGTCC
93522892 TTTT-TTAATTAATCAACCAT-T
1 TTTTATTAATTAATCAACCATAT
**
93522913 TTTTATTAATTAATCAACTTTAT
1 TTTTATTAATTAATCAACCATAT
93522936 TTTTATT-ATTAAT
1 TTTTATTAATTAAT
93522949 TCTATTATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
21 4 0.12
22 20 0.62
23 8 0.25
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTATTAATTAATCAACCATAT
Found at i:93522980 original size:25 final size:23
Alignment explanation
Indices: 93522938--93522990 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
93522928 AACTTTATTT
*
93522938 TTATTATTAATTCTATTATTGCTA
1 TTATTATTAATTCCATTATT-CTA
93522962 CTTATTATT-ATTGCCATTATTCTA
1 -TTATTATTAATT-CCATTATTCTA
93522986 TTATT
1 TTATT
93522991 TCTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 6 0.23
25 15 0.58
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (23 bp):
TTATTATTAATTCCATTATTCTA
Found at i:93536380 original size:75 final size:73
Alignment explanation
Indices: 93536257--93536477 Score: 318
Period size: 75 Copynumber: 3.0 Consensus size: 73
93536247 TCTGTTTTCT
* * *
93536257 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTATTTTCAATTATTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGGCACGCTGAGGTATTTTCAATTACTG
93536322 TTTGTCAAAA
66 TTTGTC--AA
*
93536332 AAATCAACTCATATTACGAGAGGTGAGTTGAGCCTAGGGGCACGCTGAGGTATTTTCAATTACTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGGCACGCTGAGGTATTTTCAATTACTG
93536397 TTTGTCAA
66 TTTGTCAA
* * * * *
93536405 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCA-GGACATGCTGAGGTATTTTCGATTTCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGGGCACGCTGAGGTATTTTCAATTACT
*
93536469 GTTTTTCAA
65 GTTTGTCAA
93536478 TTTATGTTTT
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
73 66 0.49
74 1 0.01
75 67 0.50
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGGCACGCTGAGGTATTTTCAATTACTG
TTTGTCAA
Found at i:93536452 original size:73 final size:73
Alignment explanation
Indices: 93536257--93536477 Score: 318
Period size: 73 Copynumber: 3.0 Consensus size: 73
93536247 TCTGTTTTCT
* * *
93536257 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGGTACGCTGAGGTATTTTCAATTATTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTACTG
93536322 TTTGTCAAAA
66 TTTGTC--AA
*
93536332 AAATCAACTCATATTACGAGAGGTGAGTTGAGCCT-AGGGGCACGCTGAGGTATTTTCAATTACT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GGGCACGCTGAGGTATTTTCAATTACT
93536396 GTTTGTCAA
65 GTTTGTCAA
* * * * *
93536405 AAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTTTCGATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTACTG
*
93536470 TTTTTCAA
66 TTTGTCAA
93536478 TTTATGTTTT
Statistics
Matches: 133, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
73 66 0.50
74 1 0.01
75 66 0.50
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTACTG
TTTGTCAA
Found at i:93536505 original size:234 final size:231
Alignment explanation
Indices: 93536077--93536625 Score: 634
Period size: 234 Copynumber: 2.4 Consensus size: 231
93536067 TATGTGGATG
* *
93536077 TTTC-ATTTCTGTTTTCAAAAAAATCAACTCATAATTGCGAGAGGTGAGTTGAGCCTCGGGGCAC
1 TTTCAATTTATGTTTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTAGGGGCAC
* *
93536141 ACCGAGGTATTTTCAAATTCTACTTTCAAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCC
65 GCCGAGGTATTTTC-AATTCTACTTTC-AAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCC
* * * * *
93536206 TTAGCTCACGTGTTGAGTCACTTTCAATTTCTATTTTTATGTCTGTTTTCTAAATCAACTCATAT
128 TCAGC-CACATGCTGAGTCACTTTCAATTTCTATTTTTATGTATGTTTTCAAAATCAACTCATAT
* * *
93536271 TGCGAGAGGTGAGTTGAGCCTCGGG-GTA-CGCTGAGGTAT
192 TGCGAGAGGTGAATTGAGCCTCGGGCATATAGC-GAGGTAT
*
93536310 TTTCAA-TTATTGTTTGTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTAGGGGCA
1 TTTCAATTTA-TGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGGCA
* ** *
93536374 CGCTGAGGTATTTTCAATTACTGTTTGTC-AAAAATCAACTCATACTGCGAGAGGTGAGTTGAGC
64 CGCCGAGGTATTTTCAATT-CTACTT-TCAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGC
* * * * * *
93536438 CTCAG-GACATGCTGAGGT-ATTTTCGATTTCTGTTTTTCAATTTATGTTTTCAAAAATCAATTC
127 CTCAGCCACATGCTGA-GTCACTTTCAATTTCTATTTTT--ATGTATGTTTTC-AAAATCAACTC
*
93536501 ATATTGCTAGAGGTGAATTGAGCCTCGGGTCATATAGCGAGGTAT
188 ATATTGCGAGAGGTGAATTGAGCCTCGGG-CATATAGCGAGGTAT
* *
93536546 TTTCAATTTATG-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA-GGTCAT
1 TTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGGGC--
93536607 ACGCCGAGGTATTTTCAAT
63 ACGCCGAGGTATTTTCAAT
93536626 AGATGTTTTT
Statistics
Matches: 272, Mismatches: 28, Indels: 31
0.82 0.08 0.09
Matches are distributed among these distances:
231 23 0.08
232 40 0.15
233 58 0.21
234 107 0.39
235 22 0.08
236 17 0.06
237 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (231 bp):
TTTCAATTTATGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGGCACG
CCGAGGTATTTTCAATTCTACTTTCAAAAAATCAACTCATACTGCGAAAGGTGAGTTGAGCCTCA
GCCACATGCTGAGTCACTTTCAATTTCTATTTTTATGTATGTTTTCAAAATCAACTCATATTGCG
AGAGGTGAATTGAGCCTCGGGCATATAGCGAGGTAT
Found at i:93536523 original size:159 final size:159
Alignment explanation
Indices: 93536330--93536831 Score: 469
Period size: 159 Copynumber: 3.0 Consensus size: 159
93536320 TGTTTGTCAA
* *
93536330 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTAGGGGCACGCTGAGGTATTTTCAA-TTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGACACGCTGAGGTATTTTCAAGTTA
*
93536394 CTGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATT
66 CTGTTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATT
93536459 TTCGATTTCTGTTTTTCAATTTATG-TTTTC
130 TTCGATTT-TGTTTTTCAATTTATGCTTTTC
* * * * * * *
93536489 AAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCATATAGC-GAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGG--ACA-CGCTGAGGTATTTTCAAG
* * *
93536553 TTA-TG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCATACGCCGAGG
63 TTACTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAT--GCTGAGG
* * * *
93536616 TATTTTCAATAGATGTTTTTTTTTTAATTTCTGCTTCTC
126 TATTTTC----GAT-TTTGTTTTTCAATTTATGCTTTTC
* * *
93536655 AAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACACGCTGAGGTATTTTC
1 ----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--GACACGCTGAGGTATTTTC
* * *
93536720 AAGTT-CTGCTTTTAAAAAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTC-GGTTCG
60 AAGTTACTG-TTTT-----CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---A
* *
93536783 CACGCTGAGGTATTTTCAATTTTCGTTTTTTCAATTTATGCTTTTC
116 CATGCTGAGGTATTTTCGATTTT-G-TTTTTCAATTTATGCTTTTC
93536829 AAA
1 AAA
93536832 TTCTGCTTTT
Statistics
Matches: 275, Mismatches: 36, Indels: 53
0.76 0.10 0.15
Matches are distributed among these distances:
159 80 0.29
160 2 0.01
161 29 0.11
162 5 0.02
165 16 0.06
166 6 0.02
169 2 0.01
170 57 0.21
172 6 0.02
173 2 0.01
174 17 0.06
176 2 0.01
177 49 0.18
179 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (159 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGGACACGCTGAGGTATTTTCAAGTTA
CTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACATGCTGAGGTATTT
TCGATTTTGTTTTTCAATTTATGCTTTTC
Found at i:93536563 original size:86 final size:86
Alignment explanation
Indices: 93536384--93536560 Score: 216
Period size: 86 Copynumber: 2.0 Consensus size: 86
93536374 CGCTGAGGTA
*
93536384 TTTTCAATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACATG
1 TTTTCAATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAATTGAGCCTCAGGACATG
* *
93536449 CTGAGGTATTTTCGATTTCTG
66 CTGAGGTATTTTCAATTTATG
* * * *
93536470 TTTTTCAATTTA-TGTTT-TCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCA
1 -TTTTCAA-TTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAATTGAGCCTCAGG--A
*
93536533 TATAGC-GAGGTATTTTCAATTTATG
62 CAT-GCTGAGGTATTTTCAATTTATG
93536558 TTT
1 TTT
93536561 CAAAAATCAA
Statistics
Matches: 78, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
86 38 0.49
87 15 0.19
88 23 0.29
89 2 0.03
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.39
Consensus pattern (86 bp):
TTTTCAATTACTGTTTGTCAAAAATCAACTCATACTGCGAGAGGTGAATTGAGCCTCAGGACATG
CTGAGGTATTTTCAATTTATG
Found at i:93536598 original size:73 final size:74
Alignment explanation
Indices: 93536471--93536634 Score: 233
Period size: 73 Copynumber: 2.2 Consensus size: 74
93536461 CGATTTCTGT
* * * *
93536471 TTTTCAATTTATGTTTTCAAAAATCAATTCATATTGCTAGAGGTGAATTGAGCCTCGGGTCATAT
1 TTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTAAGCCTCAGGTCATA-
93536536 AG-CGAGGTA
65 AGCCGAGGTA
* *
93536545 TTTTCAATTTATG-TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCATAC
1 TTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTAAGCCTCAGGTCATAA
93536609 GCCGAGGTA
66 GCCGAGGTA
**
93536618 TTTTCAATAGATGTTTT
1 TTTTCAATTTATGTTTT
93536635 TTTTTTAATT
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
72 1 0.01
73 63 0.79
74 16 0.20
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (74 bp):
TTTTCAATTTATGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAATTAAGCCTCAGGTCATAA
GCCGAGGTA
Found at i:93536827 original size:14 final size:14
Alignment explanation
Indices: 93536810--93536845 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
93536800 AATTTTCGTT
*
93536810 TTTTCAATTTATGC
1 TTTTCAAATTATGC
*
93536824 TTTTCAAATTCTGC
1 TTTTCAAATTATGC
93536838 TTTTCAAA
1 TTTTCAAA
93536846 AAATCAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.53
Consensus pattern (14 bp):
TTTTCAAATTATGC
Found at i:93536991 original size:89 final size:89
Alignment explanation
Indices: 93536821--93536991 Score: 229
Period size: 89 Copynumber: 1.9 Consensus size: 89
93536811 TTTCAATTTA
** * * *
93536821 TGCTTTTCAAATTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 TGCTTTTCAAATTAAGC-TTTCAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCT
*
93536886 CACATGTCGAGGTATTTTCAAAATC
65 CACATGTCGAGCTATTTTCAAAATC
*
93536911 TGCTTTTCAAATTAAG-TTTCAAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGCT
1 TGCTTTTCAAATTAAGCTTTC-AAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCT
*
93536975 CACGTG-CTGAGCTATTT
65 CACATGTC-GAGCTATTT
93536992 CTGTTTTAAT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
88 5 0.07
89 52 0.73
90 14 0.20
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (89 bp):
TGCTTTTCAAATTAAGCTTTCAAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGCTC
ACATGTCGAGCTATTTTCAAAATC
Found at i:93537207 original size:52 final size:52
Alignment explanation
Indices: 93537137--93537279 Score: 175
Period size: 52 Copynumber: 2.8 Consensus size: 52
93537127 GAAGCTAATT
* *
93537137 GAAGTTT-AATAGAGAAGATCGAGACTACAAATCTCTTCTCCTTAAACC-CTC
1 GAAGTTTCAGTAGAGAAGATCGAGACTACAAATCTCTTCTCCCTAAACCTC-C
* *
93537188 GAAGTTTCAGTAGAGAAGATCGAAACTACAAATCTCTTCTCCCTAAATCTCC
1 GAAGTTTCAGTAGAGAAGATCGAGACTACAAATCTCTTCTCCCTAAACCTCC
* * * *
93537240 GAAGTTTCAGT-GTAGTAGGTCGAGGCTACAAATCCCTTCT
1 GAAGTTTCAGTAG-AGAAGATCGAGACTACAAATCTCTTCT
93537280 ACCTGAATTC
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
51 8 0.10
52 71 0.89
53 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (52 bp):
GAAGTTTCAGTAGAGAAGATCGAGACTACAAATCTCTTCTCCCTAAACCTCC
Found at i:93538665 original size:28 final size:28
Alignment explanation
Indices: 93538624--93538682 Score: 109
Period size: 28 Copynumber: 2.1 Consensus size: 28
93538614 TGAAATGAAT
*
93538624 AAAAGAAACTAACTTAAATACTAGAGGC
1 AAAAGAAACCAACTTAAATACTAGAGGC
93538652 AAAAGAAACCAACTTAAATACTAGAGGC
1 AAAAGAAACCAACTTAAATACTAGAGGC
93538680 AAA
1 AAA
93538683 CGGTGCCGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.56, C:0.15, G:0.14, T:0.15
Consensus pattern (28 bp):
AAAAGAAACCAACTTAAATACTAGAGGC
Found at i:93538936 original size:24 final size:23
Alignment explanation
Indices: 93538905--93538963 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
93538895 AATATAATCC
93538905 TTTT-TTAATTAATCAACCATTT-T
1 TTTTATTAATTAATCAA-C-TTTAT
93538928 TTTTATTAATTAATCAACTTTAT
1 TTTTATTAATTAATCAACTTTAT
93538951 TTTTATT-ATTAAT
1 TTTTATTAATTAAT
93538964 TCTATTATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
22 9 0.26
23 13 0.38
24 12 0.35
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.59
Consensus pattern (23 bp):
TTTTATTAATTAATCAACTTTAT
Found at i:93538959 original size:26 final size:24
Alignment explanation
Indices: 93538909--93538964 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 24
93538899 TAATCCTTTT
*
93538909 TTAATTAATCAACCATTTTTTTTA
1 TTAATTAATCAACCATTTTTATTA
*
93538933 TTAATTAATCAACTTTATTTTTATTA
1 TTAATTAATCAAC--CATTTTTATTA
93538959 TTAATT
1 TTAATT
93538965 CTATTATTGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 13 0.46
26 15 0.54
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (24 bp):
TTAATTAATCAACCATTTTTATTA
Found at i:93538995 original size:25 final size:23
Alignment explanation
Indices: 93538953--93539005 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 23
93538943 AACTTTATTT
*
93538953 TTATTATTAATTCTATTATTGCTA
1 TTATTATTAATTCCATTATT-CTA
93538977 CTTATTATT-ATTGCCATTATTCTA
1 -TTATTATTAATT-CCATTATTCTA
93539001 TTATT
1 TTATT
93539006 TCTTATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 5 0.19
24 6 0.23
25 15 0.58
ACGTcount: A:0.26, C:0.11, G:0.04, T:0.58
Consensus pattern (23 bp):
TTATTATTAATTCCATTATTCTA
Found at i:93541429 original size:61 final size:63
Alignment explanation
Indices: 93541316--93541435 Score: 154
Period size: 61 Copynumber: 1.9 Consensus size: 63
93541306 TGATTAACAT
* ** *
93541316 CATTAATGGTTAGCAAATTACTTGTTTCTCGTCAATAGTGGTCAAATGATGTTCAAATGATATA
1 CATTAATGGTTAACAAA-TACTTGTTTCTCGTCAATAGTAATCAAATAATGTTCAAATGATATA
* * *
93541380 CATTAATGGTTAAC-AA-ACTTGTTTCTTGTCAATATTAATTAAATAATGTTCAAATG
1 CATTAATGGTTAACAAATACTTGTTTCTCGTCAATAGTAATCAAATAATGTTCAAATG
93541436 GGTGTATGAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
61 34 0.69
63 2 0.04
64 13 0.27
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.39
Consensus pattern (63 bp):
CATTAATGGTTAACAAATACTTGTTTCTCGTCAATAGTAATCAAATAATGTTCAAATGATATA
Found at i:93543254 original size:3 final size:3
Alignment explanation
Indices: 93543236--93543495 Score: 105
Period size: 3 Copynumber: 89.3 Consensus size: 3
93543226 AACAAAATGA
* * * * **
93543236 AAT AA- AAT AA- AAT AAT AAT AGT AAT GAT ACT ACT ACC AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
93543282 AAT AGTT AA- AA- AAT AAT AAT ACT AGT AAT AGT AAT TAC AAC AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
93543326 AAT AAT AGT AAT AA- AAT AA- GAT GAT AAT AAT AAT ATT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** ** **
93543372 AA- AAGT AA- AAT AA- AAT AA- AAT AGT AAT AAT AGG AGC GTT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
93543414 AAT AGT AAT AAT -AT AAAT AAT AAT -GT AGT AGT AGT AAAT AAT AGA-
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT -AAT AAT A-AT
**
93543459 AGG AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
93543496 GAGAACAACA
Statistics
Matches: 198, Mismatches: 42, Indels: 34
0.72 0.15 0.12
Matches are distributed among these distances:
2 22 0.11
3 167 0.84
4 9 0.05
ACGTcount: A:0.59, C:0.03, G:0.08, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:93545468 original size:43 final size:43
Alignment explanation
Indices: 93545406--93545735 Score: 233
Period size: 43 Copynumber: 7.6 Consensus size: 43
93545396 ATAGCTTCGA
* * * *
93545406 TCTGTTTCCCTATTGCTTAGGGTGATAAGATCTGTAAATTCAG
1 TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
* * ** ** **
93545449 CCTGTTACCCTACTGCTTA-GGGTTTAAGGCCCATCGCATTC-G
1 TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG
* * * *
93545491 ATTTGTTTCCCTATTGTTTAGGGGGTTAAGATCTGTAAATTCAG
1 -TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
* ** ***
93545535 TCTGTTACCCTACTGCTTAGGGGTTTAAGGCCTGTCGCCTTC-G
1 TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTCAG
* * * * *
93545578 ATCTATTTCCCTACTGCTTAGGAGGTTAAAATCTGTAAATTTAG
1 -TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
* *
93545622 CCTGTTACCCTACTGCTTAGGGGGTTTAAGGCCCATC-GT--CTTC-G
1 TCTGTTACCCTACTGCTTAGGGGG-TTAA-G---ATCTGTAAATTCAG
*
93545666 ATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
1 -TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
* *
93545710 CCTGCTACCCTACTGCTTAGGGGGTT
1 TCTGTTACCCTACTGCTTAGGGGGTT
93545736 TAAGGGAAGT
Statistics
Matches: 212, Mismatches: 58, Indels: 34
0.70 0.19 0.11
Matches are distributed among these distances:
40 3 0.01
41 2 0.01
42 9 0.04
43 116 0.55
44 53 0.25
45 24 0.11
47 2 0.01
48 3 0.01
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.36
Consensus pattern (43 bp):
TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAG
Found at i:93545687 original size:88 final size:86
Alignment explanation
Indices: 93545399--93545740 Score: 506
Period size: 88 Copynumber: 3.9 Consensus size: 86
93545389 TGGATTCATA
* * *
93545399 GCTTCGATCTGTTTCCCTATTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTG
1 GCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTG
93545464 CTTA-GGGTTTAAGGCCCATC
66 CTTAGGGGTTTAAGGCCCATC
* * * *
93545484 GCATTCGATTTGTTTCCCTATTGTTTAGGGGGTTAAGATCTGTAAATTCAGTCTGTTACCCTACT
1 GC-TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACT
**
93545549 GCTTAGGGGTTTAAGGCCTGTC
65 GCTTAGGGGTTTAAGGCCCATC
* * * *
93545571 GCCTTCGATCTATTTCCCTACTGCTTAGGAGGTTAAAATCTGTAAATTTAGCCTGTTACCCTACT
1 G-CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACT
93545636 GCTTAGGGGGTTTAAGGCCCATC
65 GCTTA-GGGGTTTAAGGCCCATC
*
93545659 GTCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGCTACCCTACT
1 G-CTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACT
93545724 GCTTAGGGGGTTTAAGG
65 GCTTA-GGGGTTTAAGG
93545741 GAAGTTTTTT
Statistics
Matches: 230, Mismatches: 23, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
85 2 0.01
86 62 0.27
87 74 0.32
88 92 0.40
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (86 bp):
GCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTG
CTTAGGGGTTTAAGGCCCATC
Found at i:93545721 original size:175 final size:174
Alignment explanation
Indices: 93545400--93545740 Score: 535
Period size: 175 Copynumber: 2.0 Consensus size: 174
93545390 GGATTCATAG
* * *
93545400 CTTCGATCTGTTTCCCTATTGCTTAGGGTGATAAGATCTGTAAATTCAGCCTGTTACCCTACTGC
1 CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAAATCTGTAAATTCAGCCTGTTACCCTACTGC
* * *
93545465 TTAGGGTTTAAGGCCCATCGCATTCGATTTGTTTCCCTATTGTTTAGGGGGTTAAGATCTGTAAA
66 TTAGGGTTTAAGGCCCATCGCATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
* *
93545530 TTCAGTCTGTTACCCTACTGCTTA-GGGGTTTAAGGCCTGTCGC
131 TTCAGCCTGCTACCCTACTGCTTAGGGGGTTTAAGGCCTGTCGC
* *
93545573 CTTCGATCTATTTCCCTACTGCTTAGGAG-GTTAAAATCTGTAAATTTAGCCTGTTACCCTACTG
1 CTTCGATCTATTTCCCTACTGCTTAGG-GTGATAAAATCTGTAAATTCAGCCTGTTACCCTACTG
93545637 CTTAGGGGGTTTAAGGCCCATCGTC-TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG
65 CTTA--GGGTTTAAGGCCCATCG-CATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTG
93545701 TAAATTCAGCCTGCTACCCTACTGCTTAGGGGGTTTAAGG
127 TAAATTCAGCCTGCTACCCTACTGCTTAGGGGGTTTAAGG
93545741 GAAGTTTTTT
Statistics
Matches: 153, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
173 61 0.40
174 1 0.01
175 79 0.52
176 12 0.08
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36
Consensus pattern (174 bp):
CTTCGATCTATTTCCCTACTGCTTAGGGTGATAAAATCTGTAAATTCAGCCTGTTACCCTACTGC
TTAGGGTTTAAGGCCCATCGCATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAA
TTCAGCCTGCTACCCTACTGCTTAGGGGGTTTAAGGCCTGTCGC
Found at i:93549276 original size:12 final size:13
Alignment explanation
Indices: 93549259--93549288 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
93549249 TAAAAGATTA
93549259 AATTAATTT-TTT
1 AATTAATTTATTT
93549271 AATTAATTTATTT
1 AATTAATTTATTT
93549284 AATTA
1 AATTA
93549289 TTCTCTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.53
13 8 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
AATTAATTTATTT
Found at i:93550060 original size:14 final size:14
Alignment explanation
Indices: 93550041--93550076 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
93550031 GAGATTATGT
*
93550041 AATTAAATAAATAA
1 AATTAAATAAAAAA
93550055 AATTAAATAAAAAA
1 AATTAAATAAAAAA
*
93550069 AAGTAAAT
1 AATTAAAT
93550077 GCAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (14 bp):
AATTAAATAAAAAA
Found at i:93550521 original size:25 final size:24
Alignment explanation
Indices: 93550491--93550538 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
93550481 AAAAAATTTC
*
93550491 TATATTTTATTGACAATTGTTACTT
1 TATATTCTATT-ACAATTGTTACTT
*
93550516 TATATTCTATTTCAATTGTTACT
1 TATATTCTATTACAATTGTTACT
93550539 GTACGTCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.56
Consensus pattern (24 bp):
TATATTCTATTACAATTGTTACTT
Found at i:93550899 original size:17 final size:18
Alignment explanation
Indices: 93550879--93550912 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
93550869 AAAAAAAAAA
93550879 GAGTA-AACAAAATTAAG
1 GAGTACAACAAAATTAAG
*
93550896 GAGTACAACACAATTAA
1 GAGTACAACAAAATTAA
93550913 AACCAAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.12, G:0.15, T:0.18
Consensus pattern (18 bp):
GAGTACAACAAAATTAAG
Found at i:93554243 original size:17 final size:17
Alignment explanation
Indices: 93554223--93554268 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
93554213 AATAAATAAA
93554223 AAATATTAAAAATTATT
1 AAATATTAAAAATTATT
* *
93554240 AAATGTTAAAAATTTTT
1 AAATATTAAAAATTATT
*
93554257 AAAAATTAAAAA
1 AAATATTAAAAA
93554269 ATAATATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (17 bp):
AAATATTAAAAATTATT
Found at i:93554270 original size:27 final size:27
Alignment explanation
Indices: 93554219--93554270 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
93554209 ATTTAATAAA
**
93554219 TAAAAAATATTAAAAATTATTAAATGT
1 TAAAAAATATTAAAAATTAAAAAATGT
* *
93554246 TAAAAATTTTTAAAAATTAAAAAAT
1 TAAAAAATATTAAAAATTAAAAAAT
93554271 AATATATAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (27 bp):
TAAAAAATATTAAAAATTAAAAAATGT
Found at i:93557568 original size:34 final size:35
Alignment explanation
Indices: 93557525--93557605 Score: 137
Period size: 35 Copynumber: 2.3 Consensus size: 35
93557515 CTTCTTTTTT
*
93557525 CTTGGGTTGGGGATG-AAGAGGAGAGTTTAGCTTG
1 CTTGGGTTGGGGATGAAAGAGGAGAGTTCAGCTTG
*
93557559 CTTGGGTTGGGAATGAAAGAGGAGAGTTCAGCTTG
1 CTTGGGTTGGGGATGAAAGAGGAGAGTTCAGCTTG
93557594 CTTGGGTTGGGG
1 CTTGGGTTGGGG
93557606 GAATGAAGTA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
34 14 0.33
35 29 0.67
ACGTcount: A:0.20, C:0.07, G:0.44, T:0.28
Consensus pattern (35 bp):
CTTGGGTTGGGGATGAAAGAGGAGAGTTCAGCTTG
Found at i:93557860 original size:13 final size:12
Alignment explanation
Indices: 93557844--93557882 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
93557834 AACATCATAA
93557844 TTAAAATCTAAAT
1 TTAAAA-CTAAAT
*
93557857 TTAAAACTTAAAA
1 TTAAAAC-TAAAT
93557870 TTAAAACTAAAT
1 TTAAAACTAAAT
93557882 T
1 T
93557883 ATTTTAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TTAAAACTAAAT
Found at i:93557873 original size:6 final size:6
Alignment explanation
Indices: 93557817--93557917 Score: 50
Period size: 6 Copynumber: 17.2 Consensus size: 6
93557807 AATATTTACT
* * * *
93557817 AAATTA AAATATA AAA-TA ACATCA TAATTA AAATCTA AATTTA AAACTTA
1 AAATTA AAAT-TA AAATTA AAATTA AAATTA AAAT-TA AAATTA AAA-TTA
* ** * * *
93557867 AAATTA AAACT- AAATT- ATTTTA AAATAA AAAAT- AAA-TA GAATTA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA
93557911 AAATTA A
1 AAATTA A
93557918 TATAAAACAT
Statistics
Matches: 69, Mismatches: 19, Indels: 14
0.68 0.19 0.14
Matches are distributed among these distances:
4 1 0.01
5 16 0.23
6 36 0.52
7 16 0.23
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:93559535 original size:23 final size:23
Alignment explanation
Indices: 93559509--93559564 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
93559499 ACACGGCCAA
* *
93559509 ACGCACGATCGTGTGGATCCATC
1 ACGCACGACCATGTGGATCCATC
93559532 ACGCACGACCATGTGGATCCATC
1 ACGCACGACCATGTGGATCCATC
*
93559555 ACACACGACC
1 ACGCACGACC
93559565 TGGATAAACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.27, C:0.36, G:0.21, T:0.16
Consensus pattern (23 bp):
ACGCACGACCATGTGGATCCATC
Found at i:93562775 original size:19 final size:20
Alignment explanation
Indices: 93562746--93562783 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
93562736 AAGTATACAT
*
93562746 TTCATATACAATTTAATCAA
1 TTCATATACAATTCAATCAA
93562766 TTCA-ATACAATTCAATCA
1 TTCATATACAATTCAATCA
93562784 CAACCAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.45, C:0.18, G:0.00, T:0.37
Consensus pattern (20 bp):
TTCATATACAATTCAATCAA
Found at i:93567495 original size:46 final size:46
Alignment explanation
Indices: 93567445--93567709 Score: 198
Period size: 47 Copynumber: 5.7 Consensus size: 46
93567435 TATGTGTGCT
* * *
93567445 AGTGTAAGACATGTCTGGGACATGCATCAGCAACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCAATATGAGAGCC
* * * * * * *
93567491 AGTGTAAGACCATGTCTGGGACATGGTATCGGTATTAAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAATATGAGAGCC
* *
93567539 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGT-TGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATC-AATATG-AGAGCC
* * * * *
93567585 AGTGTAAGACATGTCTGGGACATGCATCGAC-TACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-CAATATGAGAGCC
* * * * *
93567631 AGTGTAAGACCATGTCCGGGACGTGACATCGACTTGAGATA--AGAGCC
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCATCA-ATATGAGAGCC
*
93567678 AGTGTAAGACCATGTCTGAGACATAGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
93567710 TACCTTACCC
Statistics
Matches: 172, Mismatches: 35, Indels: 23
0.75 0.15 0.10
Matches are distributed among these distances:
45 2 0.01
46 64 0.37
47 73 0.42
48 30 0.17
49 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCAATATGAGAGCC
Found at i:93567701 original size:140 final size:141
Alignment explanation
Indices: 93567445--93567709 Score: 333
Period size: 140 Copynumber: 1.9 Consensus size: 141
93567435 TATGTGTGCT
* *
93567445 AGTGTAAGACATGTCTGGGACATGCATCAGCAACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCAACATGATGAGAGCCAGTGTAAGACCATGTCCGG
** * * * *
93567510 GACATGGTATCGGTATTAAGACGAGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGACATCGGTATTAAGACAAGAGCCAGTGTAAGACATGTCTGAGACATAGCATCGGCCTCG
93567574 AGTTGTAAGCC
131 AGTTGTAAGCC
* * *
93567585 AGTGTAAGACATGTCTGGGACATGCATC-GACTACGA-GATGATAGTCAGTGTAAGACCATGTCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CAAC-ATGATGAGAGCCAGTGTAAGACCATGTCC
* * *
93567648 GGGACGTGACATC-G-ACTTGAGATAAGAGCCAGTGTAAGACCATGTCTGAGACATAGCATCGG
64 GGGACATGACATCGGTA-TTAAGACAAGAGCCAGTGTAAGA-CATGTCTGAGACATAGCATCGG
93567710 TACCTTACCC
Statistics
Matches: 106, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 77 0.73
141 8 0.08
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCAACATGATGAGAGCCAGTGTAAGACCATGTCCGG
GACATGACATCGGTATTAAGACAAGAGCCAGTGTAAGACATGTCTGAGACATAGCATCGGCCTCG
AGTTGTAAGCC
Found at i:93568790 original size:21 final size:21
Alignment explanation
Indices: 93568764--93568811 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
93568754 GGGGACATGG
*
93568764 GCGTGTTATCCTTCTACACGA
1 GCGTGTTATCCTTCCACACGA
*
93568785 GCGTGTTATCCTTCCACACGG
1 GCGTGTTATCCTTCCACACGA
93568806 GCGTGT
1 GCGTGT
93568812 GCCCTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.15, C:0.29, G:0.25, T:0.31
Consensus pattern (21 bp):
GCGTGTTATCCTTCCACACGA
Found at i:93571668 original size:14 final size:14
Alignment explanation
Indices: 93571649--93571692 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 14
93571639 TCGCATGTAC
93571649 AATAAAATGAAAA-A
1 AATAAAAT-AAAATA
93571663 AATAAAATAAAATA
1 AATAAAATAAAATA
93571677 AATACAAATATAAATA
1 AATA-AAATA-AAATA
93571693 CAAATAACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.15
14 13 0.48
15 5 0.19
16 5 0.19
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (14 bp):
AATAAAATAAAATA
Found at i:93571671 original size:5 final size:5
Alignment explanation
Indices: 93571649--93571699 Score: 52
Period size: 5 Copynumber: 10.0 Consensus size: 5
93571639 TCGCATGTAC
*
93571649 AATAA AATGA AA-AA AATAA AATAA AAT-A AATACA AATATA AATACA
1 AATAA AATAA AATAA AATAA AATAA AATAA AATA-A AATA-A AATA-A
93571695 AATAA
1 AATAA
93571700 CAAGCACCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
4 7 0.18
5 17 0.44
6 15 0.38
ACGTcount: A:0.75, C:0.04, G:0.02, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:93571689 original size:12 final size:12
Alignment explanation
Indices: 93571674--93571698 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93571664 ATAAAATAAA
93571674 ATAAATACAAAT
1 ATAAATACAAAT
93571686 ATAAATACAAAT
1 ATAAATACAAAT
93571698 A
1 A
93571699 ACAAGCACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAATACAAAT
Found at i:93576545 original size:26 final size:26
Alignment explanation
Indices: 93576507--93576590 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
93576497 CATGAAATTC
* *
93576507 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
93576533 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
93576559 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
93576585 TTATCA
1 TTATCA
93576591 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:93578769 original size:14 final size:14
Alignment explanation
Indices: 93578750--93578782 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
93578740 TTACTATTAC
93578750 TATTTATCTAATTT-
1 TATTTATC-AATTTA
93578764 TATTTATCAATTTA
1 TATTTATCAATTTA
93578778 TATTT
1 TATTT
93578783 TTACCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (14 bp):
TATTTATCAATTTA
Found at i:93578838 original size:3 final size:3
Alignment explanation
Indices: 93578825--93578903 Score: 97
Period size: 3 Copynumber: 26.0 Consensus size: 3
93578815 CTATTTATGT
* *
93578825 TTA TCA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
93578872 TTTG TTT TTA CTTA TTA TTA TTA TTA TTA TTA
1 -TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
93578904 ATTTTGTTTT
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
2 2 0.03
3 60 0.91
4 4 0.06
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:93578888 original size:34 final size:34
Alignment explanation
Indices: 93578849--93578913 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
93578839 ATTATTATTA
*
93578849 TTATTATTATTATTATT-TTACTATTTGTTTTTAC
1 TTATTATTATTATTATTATTAAT-TTTGTTTTTAC
93578883 TTATTATTATTATTATTATTAATTTTGTTTT
1 TTATTATTATTATTATTATTAATTTTGTTTT
93578914 ATTACTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
34 25 0.86
35 4 0.14
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (34 bp):
TTATTATTATTATTATTATTAATTTTGTTTTTAC
Found at i:93581576 original size:23 final size:23
Alignment explanation
Indices: 93581546--93581591 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
93581536 AGATTTTTTT
93581546 TAAATATTATCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
*
93581569 TAAATATTATCACTGAATAATTC
1 TAAATATTATCACTAAATAATTC
93581592 ATATTTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.46, C:0.13, G:0.02, T:0.39
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:93583973 original size:40 final size:40
Alignment explanation
Indices: 93583918--93583999 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
93583908 TGGTTTTATG
93583918 ATTGGTTTTAGATCTATGGACAAAGACAATTATTGTGCTT
1 ATTGGTTTTAGATCTATGGACAAAGACAATTATTGTGCTT
93583958 ATTGGTTTTAGATCTATGGACAAAGACAATTATTGTGCTT
1 ATTGGTTTTAGATCTATGGACAAAGACAATTATTGTGCTT
93583998 AT
1 AT
93584000 CTATGTTGGT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (40 bp):
ATTGGTTTTAGATCTATGGACAAAGACAATTATTGTGCTT
Found at i:93584701 original size:15 final size:16
Alignment explanation
Indices: 93584671--93584705 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
93584661 GCCACCTACT
93584671 CCACCAACTGTCTGCCA
1 CCACCAAC-GTCTGCCA
93584688 CCACCAAC-TCTGCCA
1 CCACCAACGTCTGCCA
93584703 CCA
1 CCA
93584706 TTGACTCCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
17 8 0.44
ACGTcount: A:0.26, C:0.51, G:0.09, T:0.14
Consensus pattern (16 bp):
CCACCAACGTCTGCCA
Found at i:93585286 original size:5 final size:5
Alignment explanation
Indices: 93585278--93585306 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
93585268 GGACTGAACT
93585278 GACCC GACCC GACCC GACCC GACCC GACC
1 GACCC GACCC GACCC GACCC GACCC GACC
93585307 TGCCTAGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.59, G:0.21, T:0.00
Consensus pattern (5 bp):
GACCC
Found at i:93585635 original size:3 final size:3
Alignment explanation
Indices: 93585619--93585680 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
93585609 TTTCAAATTA
93585619 ATT ATT -TT -TT ATT ATT A-T ATTT ATT ATT A-T ATCT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT AT-T ATT ATT ATT
* *
93585662 TTT ATT ATT ATT ACT ATT A
1 ATT ATT ATT ATT ATT ATT A
93585681 CTCTTATTAA
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
2 8 0.16
3 37 0.74
4 5 0.10
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:93585643 original size:12 final size:12
Alignment explanation
Indices: 93585626--93585672 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
93585616 TTAATTATTT
93585626 TTTATTATTATA
1 TTTATTATTATA
93585638 TTTATTATTATA
1 TTTATTATTATA
* *
93585650 TCTATTATTATT
1 TTTATTATTATA
93585662 TTTATTATTAT
1 TTTATTATTAT
93585673 TACTATTACT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATTATTATA
Found at i:93585659 original size:24 final size:24
Alignment explanation
Indices: 93585628--93585680 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
93585618 AATTATTTTT
93585628 TATTATTATATTTATTATTA-TATC
1 TATTATTATATTTATTATTATTA-C
*
93585652 TATTATTATTTTTATTATTATTAC
1 TATTATTATATTTATTATTATTAC
93585676 TATTA
1 TATTA
93585681 CTCTTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (24 bp):
TATTATTATATTTATTATTATTAC
Found at i:93585673 original size:12 final size:12
Alignment explanation
Indices: 93585619--93585673 Score: 74
Period size: 12 Copynumber: 4.5 Consensus size: 12
93585609 TTTCAAATTA
93585619 ATTATTTTTTATT
1 ATTA-TTTTTATT
*
93585632 ATTATATTTATT
1 ATTATTTTTATT
* *
93585644 ATTATATCTATT
1 ATTATTTTTATT
93585656 ATTATTTTTATT
1 ATTATTTTTATT
93585668 ATTATT
1 ATTATT
93585674 ACTATTACTC
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
12 34 0.89
13 4 0.11
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (12 bp):
ATTATTTTTATT
Found at i:93586037 original size:15 final size:16
Alignment explanation
Indices: 93586007--93586039 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
93585997 AAATAGTTAT
93586007 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
93586024 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
93586039 A
1 A
93586040 AAAAATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:93586286 original size:3 final size:3
Alignment explanation
Indices: 93586272--93586330 Score: 57
Period size: 3 Copynumber: 19.7 Consensus size: 3
93586262 TTATTTAAAA
* * * *
93586272 TAT TAG TAT TAT TAT TAT TTT TCAT GAT TAT TAT TAT TAA TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
*
93586317 TAT TAT TCT TAT TA
1 TAT TAT TAT TAT TA
93586331 ATACATTACT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
2 2 0.04
3 42 0.93
4 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:93586478 original size:3 final size:3
Alignment explanation
Indices: 93586470--93586514 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
93586460 TTTTTACTTA
93586470 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
93586515 TATTATTATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:93586519 original size:3 final size:3
Alignment explanation
Indices: 93586513--93586566 Score: 58
Period size: 3 Copynumber: 18.0 Consensus size: 3
93586503 CATCATCATC
* *
93586513 ATT ATT ATT ATT ATT ATT ATT AATGT ATT CTT ATT TTT ATT -TT A-T
1 ATT ATT ATT ATT ATT ATT ATT -AT-T ATT ATT ATT ATT ATT ATT ATT
93586558 ATT ATT ATT
1 ATT ATT ATT
93586567 GTTTCATCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
2 4 0.09
3 34 0.79
4 4 0.09
5 1 0.02
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:93589792 original size:40 final size:40
Alignment explanation
Indices: 93589727--93589863 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 40
93589717 TCGAGAATAT
* *
93589727 AAAGTGGATAGGATTCGTTCATGATTCACTATAATACCTC
1 AAAGTGGATAGGATTTGTTCATGATTCACTATAATAACTC
* * * *
93589767 AAAGTGGATAGGATTTGTTCCTGATTCACTATAGTAATTT
1 AAAGTGGATAGGATTTGTTCATGATTCACTATAATAACTC
* * * * ** *
93589807 AAAATGAATAGGATTTATTCATGATTCACTTTGGTAACTT
1 AAAGTGGATAGGATTTGTTCATGATTCACTATAATAACTC
* *
93589847 AAGGCGGATAGGATTTG
1 AAAGTGGATAGGATTTG
93589864 ACCTGAAAAG
Statistics
Matches: 79, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 79 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.36
Consensus pattern (40 bp):
AAAGTGGATAGGATTTGTTCATGATTCACTATAATAACTC
Found at i:93589920 original size:78 final size:78
Alignment explanation
Indices: 93589827--93590058 Score: 358
Period size: 79 Copynumber: 3.0 Consensus size: 78
93589817 GGATTTATTC
*
93589827 ATGATTCACTT-TGGTAACTTAAGGCGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCGCTA
1 ATGATTCA-TTATGGTAACTTAAGGTGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCGCTA
93589891 CAGTTACATGATAT
65 CAGTTACATGATAT
* *
93589905 ATGATTCATTATGGTAACCTAAGATGGATAGGATTTGACCTGAAAAGGGTAATCCTGATTCGCTA
1 ATGATTCATTATGGTAACTTAAGGTGGATAGGATTTGACCTGAAAA-GGTAATCCTGATTCGCTA
* *
93589970 CTGTTACACGATAT
65 CAGTTACATGATAT
* * * *
93589984 ATGATTCTTTATGATAACTTAAGGTGGGTAGGATTTGACCTGAAAAGGTAATCCTGATTCACTAC
1 ATGATTCATTATGGTAACTTAAGGTGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCGCTAC
93590049 AGTTACATGA
66 AGTTACATGA
93590059 GATGTGACTC
Statistics
Matches: 139, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
77 2 0.01
78 66 0.47
79 71 0.51
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (78 bp):
ATGATTCATTATGGTAACTTAAGGTGGATAGGATTTGACCTGAAAAGGTAATCCTGATTCGCTAC
AGTTACATGATAT
Found at i:93594129 original size:21 final size:21
Alignment explanation
Indices: 93594103--93594144 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
93594093 TTTGTTTTAA
93594103 TAAAACGGCATTTTAGTCTAC
1 TAAAACGGCATTTTAGTCTAC
93594124 TAAAACGGCATTTTAGTCTAC
1 TAAAACGGCATTTTAGTCTAC
93594145 GAAATTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
TAAAACGGCATTTTAGTCTAC
Found at i:93596181 original size:3 final size:3
Alignment explanation
Indices: 93596137--93596164 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
93596127 ATATTGTTCC
93596137 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
93596165 TACATATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:93599409 original size:63 final size:63
Alignment explanation
Indices: 93599336--93599465 Score: 206
Period size: 63 Copynumber: 2.1 Consensus size: 63
93599326 GGGTTCACAT
* * * * *
93599336 GGGCGTGTGTCTAGGCCGTGTAACTCACTGTTTGTGGTACAAAGACCACACGGCCAGGGATAC
1 GGGCGTGTGTCTAGACCATGTAACTCACTATTTGTGGTACAAAAACCACACGGCCAGGGACAC
*
93599399 GGGCGTGTGTCTAGACCATGTAACTCACTATTTGTGGTACAAAAACCATACGGCCAGGGACAC
1 GGGCGTGTGTCTAGACCATGTAACTCACTATTTGTGGTACAAAAACCACACGGCCAGGGACAC
93599462 GGGC
1 GGGC
93599466 ATGTACCCAG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.25, C:0.24, G:0.30, T:0.22
Consensus pattern (63 bp):
GGGCGTGTGTCTAGACCATGTAACTCACTATTTGTGGTACAAAAACCACACGGCCAGGGACAC
Found at i:93602535 original size:34 final size:34
Alignment explanation
Indices: 93602427--93602532 Score: 149
Period size: 34 Copynumber: 3.1 Consensus size: 34
93602417 TAATTATTCA
* *
93602427 CAAATCTATGGGAGACTTGGAGTGACAACACTCT
1 CAAATTTATGGGAGACTTGGAGTGGCAACACTCT
* * *
93602461 CAAATTTACGGAAGACTTGGAGTGGGAACACTCT
1 CAAATTTATGGGAGACTTGGAGTGGCAACACTCT
*
93602495 CAAATTTATGGGATGACTTGGAGTGGCAAAACTCT
1 CAAATTTATGGGA-GACTTGGAGTGGCAACACTCT
93602530 CAA
1 CAA
93602533 TTTCATTACA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
34 40 0.65
35 22 0.35
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25
Consensus pattern (34 bp):
CAAATTTATGGGAGACTTGGAGTGGCAACACTCT
Found at i:93606052 original size:45 final size:45
Alignment explanation
Indices: 93605983--93606151 Score: 284
Period size: 45 Copynumber: 3.8 Consensus size: 45
93605973 CCAAAGATGA
* * * *
93605983 CAATGTCAATATCAGCAAAAAAGTAATAATCCCTAATGGCAATGG
1 CAATATCAATATCAGCAGAAAAGTAAGAATCCCTAATGGCAATGC
*
93606028 CAATATCAATATCAGCAGAAAAGTAAGAATCCCTAATGACAATGC
1 CAATATCAATATCAGCAGAAAAGTAAGAATCCCTAATGGCAATGC
93606073 CAATATCAATATCAGCAGAAAAGTAAGAATCCCTAATGGCAATGC
1 CAATATCAATATCAGCAGAAAAGTAAGAATCCCTAATGGCAATGC
*
93606118 CAATATCAATATCAGCAGAAAAGTAATAATCCCT
1 CAATATCAATATCAGCAGAAAAGTAAGAATCCCT
93606152 GGACTATTAC
Statistics
Matches: 117, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 117 1.00
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.21
Consensus pattern (45 bp):
CAATATCAATATCAGCAGAAAAGTAAGAATCCCTAATGGCAATGC
Found at i:93607654 original size:25 final size:24
Alignment explanation
Indices: 93607604--93607656 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
93607594 TAGGATAAAG
*
93607604 ATAAAAATAAAAACAATATTTATA
1 ATAAAAATAAAAACAATATGTATA
*
93607628 ATAAAATATAAATAATAATATGT-TA
1 ATAAAA-ATAAA-AACAATATGTATA
93607653 ATAA
1 ATAA
93607657 TATAATAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 11 0.44
26 8 0.32
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (24 bp):
ATAAAAATAAAAACAATATGTATA
Found at i:93608706 original size:25 final size:25
Alignment explanation
Indices: 93608678--93608734 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
93608668 AAAATGTACG
93608678 TAATATAGTGT-TTAAAATACATACA
1 TAATATAGT-TATTAAAATACATACA
*
93608703 TAATATAGTTATTAAAATATATACA
1 TAATATAGTTATTAAAATACATACA
93608728 TAATATA
1 TAATATA
93608735 ACAAAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 1 0.03
25 29 0.97
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (25 bp):
TAATATAGTTATTAAAATACATACA
Found at i:93608786 original size:18 final size:18
Alignment explanation
Indices: 93608765--93608814 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
93608755 GATATTTTTT
93608765 AAAAATATACAT-AATATA
1 AAAAATATA-ATAAATATA
93608783 AAAAATATAATAAATATA
1 AAAAATATAATAAATATA
*
93608801 TACATAATATAATA
1 -A-AAAATATAATA
93608815 TTAATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 2 0.07
18 15 0.54
19 1 0.04
20 10 0.36
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (18 bp):
AAAAATATAATAAATATA
Found at i:93609709 original size:2 final size:2
Alignment explanation
Indices: 93609704--93609734 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
93609694 TATATATATA
93609704 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
93609735 TCTTTCTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:93611717 original size:13 final size:14
Alignment explanation
Indices: 93611673--93611721 Score: 59
Period size: 13 Copynumber: 3.6 Consensus size: 14
93611663 TGTGTTATTG
93611673 TTTTCGTTT-TTTTCA
1 TTTTC-TTTATTTT-A
93611688 TTTT-TTTATTTTA
1 TTTTCTTTATTTTA
93611701 TTTTCTTTATTTT-
1 TTTTCTTTATTTTA
93611714 TTTTCTTT
1 TTTTCTTT
93611722 CTTTCGAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 16 0.50
14 12 0.38
15 4 0.12
ACGTcount: A:0.08, C:0.08, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTCTTTATTTTA
Found at i:93612462 original size:31 final size:31
Alignment explanation
Indices: 93612395--93612463 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
93612385 TTAACCTTAA
*
93612395 TATTATTCATATTATATTTTATTACTGCTAT
1 TATTATTCATATTATATTTTATTACTGATAT
* *
93612426 CATTATT-ATATTTTA-TTTATTAGCATGATAT
1 TATTATTCATATTATATTTTATTA-C-TGATAT
93612457 TATTATT
1 TATTATT
93612464 GTTATTACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.22
30 8 0.25
31 17 0.53
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.58
Consensus pattern (31 bp):
TATTATTCATATTATATTTTATTACTGATAT
Found at i:93612832 original size:21 final size:20
Alignment explanation
Indices: 93612795--93612833 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
93612785 TACCACCATT
**
93612795 TATAATATATGTGTATATCG
1 TATAATATATGCATATATCG
93612815 TATATATATATGCATATAT
1 TATA-ATATATGCATATAT
93612834 ATCTGTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (20 bp):
TATAATATATGCATATATCG
Found at i:93625820 original size:87 final size:85
Alignment explanation
Indices: 93625712--93626082 Score: 399
Period size: 87 Copynumber: 4.3 Consensus size: 85
93625702 TTCATAGGGT
* ****
93625712 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
93625777 AGCAGATCGAAGACGAAGAAC
66 AGCAGA-CGAAGACGAAGAAC
*
93625798 CTTAAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAAATCTTATCTCCCTAAGCAGTAGTG
1 CTT-AAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
*
93625863 GAGCAGACGAAGACGAGGAAC
65 GAGCAGACGAAGACGAAGAAC
* *
93625884 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAATAGTGA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
* * ** *
93625949 AACAGGCTGAAGATTTACAG-AT
66 AGCAGAC-GAAGA-CGA-AGAAC
* * * * * *
93625971 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTTACAGGTCTTAAC-CCCTAAGCAGTAG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-A-TTGCAGATCTTATCTCCCTAAGCAGTAG
* * * **
93626035 -GGAAGCAGATCAAAGAAGATGGGC
63 TGG-AGCAGA-CGAAGACGAAGAAC
93626059 CTT-AACCCCTAAGCAGTAGGGTAA
1 CTTAAACCCCTAAGCAGTAGGGTAA
93626083 TAGCCTGAAA
Statistics
Matches: 241, Mismatches: 34, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
85 64 0.27
86 24 0.10
87 113 0.47
88 7 0.03
89 21 0.09
90 12 0.05
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (85 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGACGAAGACGAAGAAC
Found at i:93625860 original size:42 final size:42
Alignment explanation
Indices: 93625806--93626036 Score: 150
Period size: 45 Copynumber: 5.4 Consensus size: 42
93625796 ACCTTAAAAC
* *
93625806 CCCTAAGCAGTAGGGTAACAGGTTGAATTGCAAATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTGCAAATCTTAACT
* * *
93625848 CCCTAAGCAGTAGTGG-AGCAGAC-GAA--GACGAGGAACCTTAAAC-
1 CCCTAAGCAGTAG-GGTAACAGGCTGAATTG-C-A--AATCTT-AACT
* * *
93625891 CCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGCTGAATTGCAAATCTTAACT
* * * * * *
93625933 CCCTAAGCAATAGTGAAACAGGCTGAAGATTTACAGATCTTAACC
1 CCCTAAGCAGTAGGGTAACAGGCTG-A-A-TTGCAAATCTTAACT
* * **
93625978 CCCTAAGTAGTAGGGTAACAGGCTGAAGATTTACAGGTCTTAAC-
1 CCCTAAGCAGTAGGGTAACAGGCTG-A-A-TTGCAAATCTTAACT
93626022 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
93626037 AAGCAGATCA
Statistics
Matches: 151, Mismatches: 24, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
39 1 0.01
40 1 0.01
41 6 0.04
42 44 0.29
43 25 0.17
44 21 0.14
45 52 0.34
46 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.23
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAGGCTGAATTGCAAATCTTAACT
Found at i:93625998 original size:45 final size:45
Alignment explanation
Indices: 93625884--93626036 Score: 188
Period size: 45 Copynumber: 3.5 Consensus size: 45
93625874 GACGAGGAAC
* * *
93625884 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-A-TTGCAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* * * * *
93625926 CTTATCTCCCTAAGCAATAGTGAAACAGGCTGAAGATTTACAGAT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
* *
93625971 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTTACAGGT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
93626016 CTTAA-CCCCTAAGCAGTAGGG
1 CTTAACCCCCTAAGCAGTAGGG
93626037 AAGCAGATCA
Statistics
Matches: 92, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
42 25 0.27
43 1 0.01
44 16 0.17
45 50 0.54
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (45 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAGAT
Found at i:93625998 original size:172 final size:175
Alignment explanation
Indices: 93625712--93626082 Score: 420
Period size: 172 Copynumber: 2.1 Consensus size: 175
93625702 TTCATAGGGT
* * *
93625712 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAATAGTGA
* * *
93625777 AGCAGATCGAAGACGAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGTTG-A-A-TTGCAA
66 AACAGATCGAAGACGAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAA
* * *
93625839 ATCTTATCTCCCTAAGCAGTAGTGG-AGCAGA-CGAAGACGA-GGAAC
131 ATCTTAAC-CCCTAAGCAGTAG-GGAAGCAGATCAAAGAAGATGG-AC
****
93625884 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCTCCCTAAGCAATAGTGA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAATAGTGA
* ** * * *
93625949 AACAG-GCTGAAGATTTACAG-ATCTT-AACCCCCTAAGTAGTAGGGTAACAGGCTGAAGATTTA
66 AACAGATC-GAAGA-CGA-AGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTA
** *
93626011 CAGGTCTTAACCCCTAAGCAGTAGGGAAGCAGATCAAAGAAGATGGGC
128 CAAATCTTAACCCCTAAGCAGTAGGGAAGCAGATCAAAGAAGATGGAC
93626059 CTT-AACCCCTAAGCAGTAGGGTAA
1 CTTAAACCCCTAAGCAGTAGGGTAA
93626083 TAGCCTGAAA
Statistics
Matches: 168, Mismatches: 22, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
171 1 0.01
172 93 0.55
173 8 0.05
174 43 0.26
175 21 0.12
176 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (175 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAATAGTGA
AACAGATCGAAGACGAAGAACCTTAAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAA
ATCTTAACCCCTAAGCAGTAGGGAAGCAGATCAAAGAAGATGGAC
Found at i:93626339 original size:86 final size:86
Alignment explanation
Indices: 93626191--93626387 Score: 243
Period size: 86 Copynumber: 2.3 Consensus size: 86
93626181 AGACGAGGAA
* *** * **
93626191 CCTTAAACCCCTAAGCAGTAGGGTAACAGGTTGAATTGCAGATCTTATCCCCCTAAGCAGTAGGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAAGCCAAATTACAGATCTTAAACCCCTAAGCAGTAGGG
* *
93626256 AAATAGATCGAAGATAATAAG
66 AAATAGATCGAAGACAACAAG
* * *
93626277 -CTTTAACCCCTAAGCAGTAGGGTAACAAGCCAAATTTACAGATCTTAAATCCCTAAGTAGTAGG
1 CCTTAAACCCCTAAGCAGTAGGGTAACAAGCCAAA-TTACAGATCTTAAACCCCTAAGCAGTAGG
* **
93626341 GAAATGGATCGAAGACAACGGG
65 GAAATAGATCGAAGACAACAAG
93626363 CCTTAAACCCCTAAGCAGTAGGGTA
1 CCTTAAACCCCTAAGCAGTAGGGTA
93626388 TCAGGCTGGA
Statistics
Matches: 93, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
85 29 0.31
86 41 0.44
87 23 0.25
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (86 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAAGCCAAATTACAGATCTTAAACCCCTAAGCAGTAGGG
AAATAGATCGAAGACAACAAG
Found at i:93627233 original size:13 final size:14
Alignment explanation
Indices: 93627189--93627237 Score: 59
Period size: 13 Copynumber: 3.6 Consensus size: 14
93627179 TGTGTTATTG
93627189 TTTTCGTTT-TTTTCA
1 TTTTC-TTTATTTT-A
93627204 TTTT-TTTATTTTA
1 TTTTCTTTATTTTA
93627217 TTTTCTTTATTTT-
1 TTTTCTTTATTTTA
93627230 TTTTCTTT
1 TTTTCTTT
93627238 CTTTCGAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
13 16 0.50
14 12 0.38
15 4 0.12
ACGTcount: A:0.08, C:0.08, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTCTTTATTTTA
Found at i:93627980 original size:31 final size:31
Alignment explanation
Indices: 93627913--93627981 Score: 79
Period size: 31 Copynumber: 2.2 Consensus size: 31
93627903 TTAACCTTAA
*
93627913 TATTATTCATATTATATTTTATTACTGCTAT
1 TATTATTCATATTATATTTTATTACTGATAT
* *
93627944 CATTATT-ATATTTTA-TTTATTAGCATGATAT
1 TATTATTCATATTATATTTTATTA-C-TGATAT
93627975 TATTATT
1 TATTATT
93627982 GTTATTACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.22
30 8 0.25
31 17 0.53
ACGTcount: A:0.30, C:0.07, G:0.04, T:0.58
Consensus pattern (31 bp):
TATTATTCATATTATATTTTATTACTGATAT
Found at i:93628350 original size:21 final size:20
Alignment explanation
Indices: 93628313--93628351 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
93628303 TACCACCATT
**
93628313 TATAATATATGTGTATATCG
1 TATAATATATGCATATATCG
93628333 TATATATATATGCATATAT
1 TATA-ATATATGCATATAT
93628352 ATCTGTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (20 bp):
TATAATATATGCATATATCG
Found at i:93631260 original size:12 final size:12
Alignment explanation
Indices: 93631243--93631267 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93631233 TTGTCTGGTC
93631243 AAATGATGTTGA
1 AAATGATGTTGA
93631255 AAATGATGTTGA
1 AAATGATGTTGA
93631267 A
1 A
93631268 TTGGGTGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (12 bp):
AAATGATGTTGA
Found at i:93633476 original size:18 final size:19
Alignment explanation
Indices: 93633437--93633477 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
93633427 ATTGCTTTGA
*
93633437 TATTATATAATTTTTATTT
1 TATTATATAATTTTTATAT
93633456 TATTAT-TAATTTTGT-TAT
1 TATTATATAATTTT-TATAT
93633474 TATT
1 TATT
93633478 TTAGAGATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (19 bp):
TATTATATAATTTTTATAT
Found at i:93635018 original size:91 final size:92
Alignment explanation
Indices: 93634908--93635075 Score: 241
Period size: 92 Copynumber: 1.8 Consensus size: 92
93634898 TTAAACTTAA
* * * * * *
93634908 AAAAAAAAGTAATTAAGCTTCTG-TTTTCTTTTTGCA-TTCAATTGGCTATTTGAACTTTTAAAA
1 AAAAAAAAGCAATTAAGCTTCTGATTTTCTTTTTGCACTT-AAGTGGATACTTGAACTATCAAAA
93634971 TGTATCAAAAAGAGCCTCAAATTTTTTC
65 TGTATCAAAAAGAGCCTCAAATTTTTTC
* *
93634999 AAAAAAAAGCAATTAAGCTTCTGATTTTTTTTTTTCACTTAAGTGGATACTTGAACTATCAAAAT
1 AAAAAAAAGCAATTAAGCTTCTGATTTTCTTTTTGCACTTAAGTGGATACTTGAACTATCAAAAT
93635064 GTATCAAAAAGA
66 GTATCAAAAAGA
93635076 CCCTTTGATC
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
91 22 0.33
92 43 0.64
93 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.38
Consensus pattern (92 bp):
AAAAAAAAGCAATTAAGCTTCTGATTTTCTTTTTGCACTTAAGTGGATACTTGAACTATCAAAAT
GTATCAAAAAGAGCCTCAAATTTTTTC
Found at i:93637057 original size:14 final size:14
Alignment explanation
Indices: 93637038--93637075 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
93637028 TTCGTTCTAC
*
93637038 TGCTCTTTTTTTTT
1 TGCTCTTTTTGTTT
93637052 TGCTCTTTTTGTTT
1 TGCTCTTTTTGTTT
93637066 TG-T-TTTTTGT
1 TGCTCTTTTTGT
93637076 GTAATTTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 7 0.30
13 1 0.04
14 15 0.65
ACGTcount: A:0.00, C:0.11, G:0.13, T:0.76
Consensus pattern (14 bp):
TGCTCTTTTTGTTT
Found at i:93641755 original size:7 final size:6
Alignment explanation
Indices: 93641717--93641758 Score: 57
Period size: 6 Copynumber: 6.7 Consensus size: 6
93641707 TTTTATAATT
*
93641717 AATTTA AATTTA AATTTA AATTTA ATTCTTA AATTTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AAT-TTA AA-TTTA AATT
93641759 ATTTAGTGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.69
7 9 0.28
8 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (6 bp):
AATTTA
Found at i:93643257 original size:19 final size:21
Alignment explanation
Indices: 93643221--93643260 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
93643211 TTTTATAATA
*
93643221 TTATTAGTGAGTTTAAATATT
1 TTATTAGTGAGTTGAAATATT
93643242 TTATTA-TGA-TTGAAATATT
1 TTATTAGTGAGTTGAAATATT
93643261 AATGTCAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (21 bp):
TTATTAGTGAGTTGAAATATT
Found at i:93644484 original size:3 final size:3
Alignment explanation
Indices: 93644476--93644537 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
93644466 ATTTTCAGCA
* *
93644476 AAG AAG AAG AAG AAA AAG AAG AAG AAG AAG -GG AAG AAG -AG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
93644522 AAG AAAG AAA AAG AAG
1 AAG -AAG AAG AAG AAG
93644538 GAGAGGAGGA
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
2 3 0.06
3 44 0.88
4 3 0.06
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:93644512 original size:8 final size:8
Alignment explanation
Indices: 93644476--93644522 Score: 53
Period size: 8 Copynumber: 5.9 Consensus size: 8
93644466 ATTTTCAGCA
93644476 AAGAAGAAG
1 AAGAAG-AG
93644485 AAGAA-A-
1 AAGAAGAG
93644491 AAGAAGAAG
1 AAGAAG-AG
*
93644500 AAGAAGGG
1 AAGAAGAG
93644508 AAGAAGAG
1 AAGAAGAG
93644516 AAGAAGA
1 AAGAAGA
93644523 AGAAAGAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
6 5 0.15
7 1 0.03
8 16 0.48
9 11 0.33
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (8 bp):
AAGAAGAG
Found at i:93644530 original size:32 final size:32
Alignment explanation
Indices: 93644476--93644538 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
93644466 ATTTTCAGCA
*
93644476 AAGAAGAAGAAGAAAAAGAAGAAGAAGAAGGG
1 AAGAAGAAGAAGAAAAAGAAGAAAAAGAAGGG
*
93644508 AAGAAG-AGAAGAAGAAGAAAGAAAAAGAAGG
1 AAGAAGAAGAAGAAAAAG-AAGAAAAAGAAGG
93644539 AGAGGAGGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 10 0.36
32 18 0.64
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (32 bp):
AAGAAGAAGAAGAAAAAGAAGAAAAAGAAGGG
Found at i:93644623 original size:14 final size:14
Alignment explanation
Indices: 93644574--93644636 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
93644564 TGAGAGAAGA
93644574 AAAAAGAA--AAAG
1 AAAAAGAAGGAAAG
93644586 AAAAAGAGAAGGAGAAG
1 -AAAA-AGAAGGA-AAG
* * *
93644603 AAGAAGAGGGAAGG
1 AAAAAGAAGGAAAG
93644617 AAAAAGAAGGAAAG
1 AAAAAGAAGGAAAG
93644631 AAAAAG
1 AAAAAG
93644637 GTAATTTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 6 0.15
16 4 0.10
17 3 0.08
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (14 bp):
AAAAAGAAGGAAAG
Found at i:93644623 original size:17 final size:17
Alignment explanation
Indices: 93644579--93644636 Score: 50
Period size: 19 Copynumber: 3.4 Consensus size: 17
93644569 GAAGAAAAAA
*
93644579 GAAAAAGAAAAAGAGAAG
1 GAAAAAG-AAGAGAGAAG
*
93644597 GAGAAGAAGAAGAGGGAAG
1 GA-AA-AAGAAGAGAGAAG
93644616 GAAAAAGAAG-GA-AA-
1 GAAAAAGAAGAGAGAAG
93644630 GAAAAAG
1 GAAAAAG
93644637 GTAATTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
14 7 0.20
15 2 0.06
16 1 0.03
17 6 0.17
18 4 0.11
19 12 0.34
20 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GAAAAAGAAGAGAGAAG
Found at i:93645115 original size:30 final size:31
Alignment explanation
Indices: 93645075--93645133 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
93645065 TTTTTTTAAA
*
93645075 ATAATATAAAAAAATAAAATATGAAAATAGT
1 ATAATATAAAAAAATAAAATACGAAAATAGT
*
93645106 ATAAT-TAAAAAAATAAAATCCGAAAATA
1 ATAATATAAAAAAATAAAATACGAAAATA
93645134 AAAAAATACG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (31 bp):
ATAATATAAAAAAATAAAATACGAAAATAGT
Found at i:93645238 original size:136 final size:133
Alignment explanation
Indices: 93645085--93646125 Score: 344
Period size: 147 Copynumber: 7.2 Consensus size: 133
93645075 ATAATATAAA
** * * *
93645085 AAAATAAAATATGAAAATAGTATAATTAAAAAAATAAAATCCGAAAATAAAAAAATACGAACAAG
1 AAAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACG-----AAAAAAATACGAACAAA
* **
93645150 GTGCCAAAGTCA-GGTTACTTATTAAATTAATATAAAAAA-ACTTAAATAATACATTTGAAAGAT
61 GTGCCAAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAAGAT
93645213 TTTATGCT
126 TTTATGCT
* * * * *
93645221 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACGAAAAAAATACGAACAAAGTGCC
*
93645286 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTG-AAGCATTATG
66 AAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAAG-A-T-T-
**
93645350 TACTAAAATAATAT
127 T--T---AT--GCT
* ** * *
93645364 AAAGAAATAAAATACGAAAATAATAT-ATTTTAAAAATAATATACGAAATAAAAAAATTACGAAG
1 --A-AAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACG----AAAAAAA-TACGAAC
** * * * * *
93645428 AAAGTATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAATATAAAGAAACAGTTAATTAATACA
58 AAAGTGCCAAAATCAGGGTTACTTA-TTAAAAA-----AATATAAA-AAATACTTAAATAATACA
** *
93645493 TTTG-AATTTTTTTTGCT
116 TTTGAAAGATTTTATGCT
* * *
93645510 AAAATAATATA-AAAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATA
1 AAAATAAAATACCAAAAT--AAT------ATAAT-TA----AAAAAATAAAATACGAAAAAAATA
* * * * * *
93645574 CGAATAAAGTGCTAAAATCAGGGATATTTATTGAAAAAATATAAAAAATACTGAAATAATACATT
53 CGAACAAAGTGCCAAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATT
* **
93645639 TGAAACATTATGTACTAAAATAATAT
118 TGAAAGA-T-T-T--T---AT--GCT
* * * * *
93645665 GAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATAC-AAAAAAATACAAGAAAAAA
1 --A-AAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACGAAAAAAATAC--GAACAAA
* * ** *
93645729 GTGTCAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATATACATAATACA
61 GTGCCAAAATCAGGGTTACTTATTAAA--AAAATATAAAAA-A--TAC-T--TA-A-ATAATACA
* *
93645794 TTTGAAACATTTTTTGCT
116 TTTGAAAGATTTTATGCT
* ** *
93645812 AAAATAATATAAAAAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG-AAAAAATA
1 AAAATAAAATACCAAAAT--AAT------ATAAT-TA----AAAAAATAAAATACGAAAAAAATA
* * * * ** * *
93645876 TGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATTTAAAACACTTAAATAATATATT
53 CGAACAAAGTGCCAAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATT
* * *
93645941 TAAAACATTATGTACTAAAATAAGGGTTTT
118 TGAAAGA-T-T-T--T---AT----G--CT
* * * *
93645971 AAAATTAAATAATACGAAAGTAATAT-ATTTAAAAAA-AAGATACGAAAAAAATACGAA-AAAGT
1 AAAA-T-AA-AATACCAAAATAATATAATTAAAAAAATAAAATACGAAAAAAATACGAACAAAGT
* * * ** * * *
93646033 GTCAAAATCAGTGTTATTTATTAAATTAATATAAAAAATACTTACATAATACATTTAAAACATTT
63 GCCAAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAAGATTT
93646098 T-TGCT
128 TATGCT
* *
93646103 AAAATAATATA-AAAAATAATATA
1 AAAATAAAATACCAAAATAATATA
93646126 CGAAAATATT
Statistics
Matches: 693, Mismatches: 110, Indels: 211
0.68 0.11 0.21
Matches are distributed among these distances:
128 9 0.01
129 3 0.00
130 2 0.00
131 26 0.04
132 32 0.05
133 19 0.03
134 2 0.00
135 1 0.00
136 37 0.05
138 2 0.00
141 2 0.00
142 6 0.01
143 10 0.01
144 37 0.05
145 55 0.08
146 42 0.06
147 98 0.14
148 20 0.03
149 18 0.03
150 41 0.06
151 40 0.06
152 18 0.03
153 14 0.02
154 4 0.01
155 35 0.05
156 24 0.03
157 64 0.09
158 9 0.01
159 10 0.01
160 4 0.01
161 2 0.00
162 7 0.01
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (133 bp):
AAAATAAAATACCAAAATAATATAATTAAAAAAATAAAATACGAAAAAAATACGAACAAAGTGCC
AAAATCAGGGTTACTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAAGATTTTAT
GCT
Found at i:93645388 original size:29 final size:29
Alignment explanation
Indices: 93645356--93645411 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
93645346 TATGTACTAA
93645356 AATA-ATATAAAGAAATAAAATACGAAAAT
1 AATATATATAAA-AAATAAAATACGAAAAT
* * *
93645385 AATATATTTTAAAAATAATATACGAAA
1 AATATATATAAAAAATAAAATACGAAA
93645412 TAAAAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 18 0.78
30 5 0.22
ACGTcount: A:0.64, C:0.04, G:0.05, T:0.27
Consensus pattern (29 bp):
AATATATATAAAAAATAAAATACGAAAAT
Found at i:93645424 original size:16 final size:18
Alignment explanation
Indices: 93645394--93645426 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
93645384 TAATATATTT
93645394 TAAAAATAATATACGAAA
1 TAAAAATAATATACGAAA
93645412 TAAAAA-AAT-TACGAA
1 TAAAAATAATATACGAA
93645427 GAAAGTATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (18 bp):
TAAAAATAATATACGAAA
Found at i:93645527 original size:12 final size:13
Alignment explanation
Indices: 93645510--93645545 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
93645500 TTTTTTTGCT
93645510 AAAATAATATAA-
1 AAAATAATATAAG
*
93645522 AAAATAAAATAAG
1 AAAATAATATAAG
93645535 AAAATAATATA
1 AAAATAATATA
93645546 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 11 0.52
13 10 0.48
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (13 bp):
AAAATAATATAAG
Found at i:93645541 original size:301 final size:290
Alignment explanation
Indices: 93645071--93646133 Score: 1197
Period size: 301 Copynumber: 3.6 Consensus size: 290
93645061 GAGTTTTTTT
* * * * *
93645071 TAAAATAATATAAAAAAATAAAATATGAAAATAGTATA-ATTAAAAAAATAAAATCCGAAAATAA
1 TAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAAAT---ATACG--AA-AA
* * * * *
93645135 AAAAATACGAACAAGGTGCCAAAGTCA-GGTTACTTATTAAATTAATATAAAAAA-ACTTA-AAT
60 AAAAATACGAA-AAAGTGTCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTACATT
* *
93645197 AATACATTTGAAAGATTTTATGC----------T--AAAATAAAATACCAAAATAATATATTTTA
124 AATACATTTGAAA-ATTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTA
93645250 AAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATAT
188 AAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATAT
*
93645315 AAAAAATACTTAAATAATACATTTGAAGCATTATGTAC
253 AAAAAATACTTAAATAATACATTTGAAACATTATGTAC
93645353 TAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAATAATATACGAAATAAAAA
1 TAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAA-AATATACG-AA-AAAAA
* * *
93645418 AATTACGAAGAAAGTATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAATATAAAGAAACAGTT
63 AA-TACGAA-AAAGTGTCAAAATCAGGGTTATTTA-T--TAAA---TTAATATAAA-AAACACTT
** *
93645483 A-ATTAATACATTTGAATTTTTTTTGCTAAAATAATATAAAAAATAAAATAAGAAAATAATATAT
119 ACATTAATACATTTGAAAATTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATAT
* *
93645547 TTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGATATTTATTGAAAAA
184 TTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAA
*
93645612 ATATAAAAAATACTGAAATAATACATTTGAAACATTATGTAC
249 ATATAAAAAATACTTAAATAATACATTTGAAACATTATGTAC
*
93645654 TAAAATAATATGAAGAAATAAAATACGAAAATAATATATTTT-AAAAAATA-A-GATACAAAAAA
1 TAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAAATATACGA-A-AAAAAA
*
93645716 ATACAAGAAAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAA
64 ATAC--G-AAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAAACACTTAC----
*
93645781 TATACATAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAAAATAAAATAGGAAAATAAT
121 -AT---TAATACATTTGAAA-ATTTTTTGCTAAAATAATAT-AAAAAATAAAATACGAAAATAAT
*
93645846 ATATTTTAAAAAATAATATACG-AAAAAATATGAATAAAGTGCTAAAATCAGGGTTATTTATTAA
180 ATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAA
** * * *
93645910 AAAAATATTTAAAACACTTAAATAATATATTTAAAACATTATGTAC
245 AAAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGTAC
* * * * * *
93645956 TAAAATAAGGGTTTTAA-AATTAAATAATACGAAAGTAATATATTTAAAAAAAAGATACG--AAA
1 TAAAATAA---TATAAAGAAAT-AA-AATACGAAAATAATATATTTTAAAAAAATATACGAAAAA
* *
93646018 AAAATACGAAAAAGTGTCAAAATCAGTGTTATTTATTAAATTAATATAAAAAATACTTACA-TAA
61 AAAATACGAAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTACATTAA
* *
93646082 TACATTT-AAAACATTTTTGCTAAAATAATATAAAAAATAATATACGAAAATA
126 TACATTTGAAAA-TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATA
93646134 TTTTACTTAT
Statistics
Matches: 679, Mismatches: 53, Indels: 90
0.83 0.06 0.11
Matches are distributed among these distances:
280 11 0.02
281 21 0.03
282 43 0.06
283 8 0.01
284 3 0.00
285 3 0.00
288 10 0.01
289 10 0.01
290 38 0.06
291 21 0.03
292 24 0.04
293 3 0.00
295 3 0.00
296 5 0.01
297 10 0.01
298 28 0.04
299 7 0.01
300 4 0.01
301 192 0.28
302 143 0.21
303 45 0.07
304 3 0.00
305 16 0.02
306 19 0.03
307 7 0.01
308 1 0.00
309 1 0.00
ACGTcount: A:0.56, C:0.07, G:0.08, T:0.29
Consensus pattern (290 bp):
TAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAAATATACGAAAAAAAAAT
ACGAAAAAGTGTCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTACATTAATACAT
TTGAAAATTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAA
TATACGAAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAAATATAAAAAATA
CTTAAATAATACATTTGAAACATTATGTAC
Found at i:93645764 original size:147 final size:145
Alignment explanation
Indices: 93645221--93646133 Score: 1004
Period size: 157 Copynumber: 6.1 Consensus size: 145
93645211 ATTTTATGCT
*
93645221 AAAATAAAATACCAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* *
93645286 AAAATCAGGGTTATTTATTAAAAAAATATAAAAAATACTTAAATAATACATTTGAAGCATTATGT
66 AAAATCAGGGTTATTTATTAAATAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
93645351 ACTAAAATAATATAA
131 ACTAAAATAATATAA
*
93645366 AGAAATAAAATACGAAAATAATATATTTT-AAAAATAATATACGAAATAAAAAAATTACGAAGAA
1 A-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG----AAAAAAA-TACGAATAA
* * * * * *
93645430 AGT-ATCAAAATCAGGGTTATTTAGTAAAAAACCCTTAATATAAAGAAACAGTTAATTAATACAT
60 AGTGCT-AAAATCAGGGTTATTTA-T--TAAA---TAAATATAAA-AAATACTTAAATAATACAT
** * * *
93645494 TTG-AATTTTTTTTGCTAAAATAATATAA
117 TTGAAACATTATGTACTAAAATAATATAA
*
93645522 AAAATAAAATAAGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* *
93645587 AAAATCAGGGATATTTATTGAAA-AAATATAAAAAATACTGAAATAATACATTTGAAACATTATG
66 AAAATCAGGGTTATTTATT-AAATAAATATAAAAAATACTTAAATAATACATTTGAAACATTATG
93645651 TACTAAAATAATATGAA
130 TACTAAAATAATAT-AA
* * *
93645668 GAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATAC-AAAAAAATACAAGAAAAAAGTG
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATAC--GAATAAAGTG
* *
93645732 -TCAAAATCAGGGTTATTTATTAAATTAGTATAAAAAAACACTTACATAATATACATAATACATT
64 CT-AAAATCAGGGTTATTTATTAAA-TA-AATATAAAAA-A--TAC-T--TA-A-ATAATACATT
* * *
93645796 TGAAACATTTTTTGCTAAAATAATATAAA
118 TGAAACATTATGTACTAAAATAATAT-AA
* *
93645825 AAAATAAAATAGGAAAATAATATATTTTAAAAAATAATATACG-AAAAAATATGAATAAAGTGCT
1 AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
* ** * * *
93645889 AAAATCAGGGTTATTTATTAAAAAAATATTTAAAACACTTAAATAATATATTTAAAACATTATGT
66 AAAATCAGGGTTATTTATTAAATAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
* *
93645954 ACTAAAATAAGGGTTTTA
131 ACTAAAATAA---TATAA
* * *
93645972 AAATTAAATAATACGAAAGTAATATA-TTTAAAAAA-AAGATACGAAAAAAATACGAA-AAAGTG
1 AAAAT-AA-AATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTG
* * * *
93646034 -TCAAAATCAGTGTTATTTATTAAATTAATATAAAAAATACTTACATAATACATTTAAAACATT-
64 CT-AAAATCAGGGTTATTTATTAAATAAATATAAAAAATACTTAAATAATACATTTGAAACATTA
* *
93646097 TTTGCTAAAATAATATAA
128 TGTACTAAAATAATATAA
*
93646115 AAAATAATATACGAAAATA
1 AAAATAAAATACGAAAATA
93646134 TTTTACTTAT
Statistics
Matches: 646, Mismatches: 80, Indels: 88
0.79 0.10 0.11
Matches are distributed among these distances:
141 10 0.02
142 2 0.00
143 7 0.01
144 18 0.03
145 79 0.12
146 84 0.13
147 100 0.15
148 25 0.04
149 35 0.05
150 32 0.05
151 28 0.04
152 12 0.02
153 10 0.02
154 1 0.00
155 58 0.09
156 44 0.07
157 101 0.16
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.30
Consensus pattern (145 bp):
AAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGAAAAAAATACGAATAAAGTGCT
AAAATCAGGGTTATTTATTAAATAAATATAAAAAATACTTAAATAATACATTTGAAACATTATGT
ACTAAAATAATATAA
Done.