Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 307 of 325
Found at i:93645871 original size:15 final size:14
Alignment explanation
Indices: 93645812--93645875 Score: 51
Period size: 15 Copynumber: 4.4 Consensus size: 14
93645802 ATTTTTTGCT
93645812 AAAATAATATA-AA
1 AAAATAATATAGAA
*
93645825 AAAATAAAATAGGAA
1 AAAATAATATA-GAA
**
93645840 AATAAT-ATATTTTAA
1 AA-AATAATA-TAGAA
93645855 AAAATAATATACGAA
1 AAAATAATATA-GAA
93645870 AAAATA
1 AAAATA
93645876 TGAATAAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
13 10 0.26
14 4 0.10
15 21 0.54
16 4 0.10
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.25
Consensus pattern (14 bp):
AAAATAATATAGAA
Found at i:93645930 original size:21 final size:22
Alignment explanation
Indices: 93645906--93645947 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
93645896 GGGTTATTTA
93645906 TTAAA-AAAATATTTAAAACAC
1 TTAAATAAAATATTTAAAACAC
*
93645927 TTAAATAATATATTTAAAACA
1 TTAAATAAAATATTTAAAACA
93645948 TTATGTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (22 bp):
TTAAATAAAATATTTAAAACAC
Found at i:93648093 original size:71 final size:72
Alignment explanation
Indices: 93648001--93648140 Score: 219
Period size: 71 Copynumber: 2.0 Consensus size: 72
93647991 AGTCCGAGCG
* *
93648001 ATCGCATTCACATTCGACTGATACTTCTTATCATCCGGATTTGGCAGGCAATGACTATTTC-CGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCAGATTTGGCAGGCAATGACAATTTCTCGG
93648065 GCTCGTC
66 GCTCGTC
* * * *
93648072 ATCGCATTCACTTTCGGCTGATACTTCTTATCATCCAGATTTTGCGGGCAATGACAATTTCTCGG
1 ATCGCATTCACATTCGACTGATACTTCTTATCATCCAGATTTGGCAGGCAATGACAATTTCTCGG
93648137 GCTC
66 GCTC
93648141 ATCGGGGGCG
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
71 55 0.89
72 7 0.11
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (72 bp):
ATCGCATTCACATTCGACTGATACTTCTTATCATCCAGATTTGGCAGGCAATGACAATTTCTCGG
GCTCGTC
Found at i:93648233 original size:33 final size:33
Alignment explanation
Indices: 93648187--93648260 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
93648177 GGGTCGTACA
*
93648187 CACCGCAGCATAGCACCT-CTCCCGGCCCATATC
1 CACCGCAGCATAGCA-CTGCCCCCGGCCCATATC
** *
93648220 CACCGCATTATAGCACTGCCCCCGGCCCGTATC
1 CACCGCAGCATAGCACTGCCCCCGGCCCATATC
*
93648253 CACTGCAG
1 CACCGCAG
93648261 TACTCCACTC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 2 0.06
33 32 0.94
ACGTcount: A:0.20, C:0.46, G:0.18, T:0.16
Consensus pattern (33 bp):
CACCGCAGCATAGCACTGCCCCCGGCCCATATC
Found at i:93652590 original size:21 final size:20
Alignment explanation
Indices: 93652565--93652604 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
93652555 CTTCTTTTTT
*
93652565 TCTTCTCCTTTTTCTTCCTTC
1 TCTTCTCCTTTCT-TTCCTTC
93652586 TCTTCTCCTTTCTTTCCTT
1 TCTTCTCCTTTCTTTCCTT
93652605 TTATTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (20 bp):
TCTTCTCCTTTCTTTCCTTC
Found at i:93652603 original size:9 final size:10
Alignment explanation
Indices: 93652563--93652605 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
93652553 ACCTTCTTTT
93652563 TTTCTTCTCC
1 TTTCTTCTCC
93652573 TTT-TTCTTCC
1 TTTCTTC-TCC
93652583 TTCTCTTCTCC
1 TT-TCTTCTCC
93652594 TTTCTT-TCC
1 TTTCTTCTCC
93652603 TTT
1 TTT
93652606 TATTTTCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
9 9 0.30
10 12 0.40
11 6 0.20
12 3 0.10
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTCTTCTCC
Found at i:93654385 original size:15 final size:14
Alignment explanation
Indices: 93654367--93654431 Score: 62
Period size: 15 Copynumber: 4.6 Consensus size: 14
93654357 ATATCAAATC
93654367 ATATTAAATTCTAAT
1 ATATTAAA-TCTAAT
* *
93654382 ATATTATATCAAAT
1 ATATTAAATCTAAT
*
93654396 AATATTAATATATAAT
1 -ATATTAA-ATCTAAT
93654412 ATATTAAA-CT-AT
1 ATATTAAATCTAAT
93654424 ATATTAAA
1 ATATTAAA
93654432 AATATATTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
12 10 0.24
13 1 0.02
14 6 0.14
15 20 0.48
16 5 0.12
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
ATATTAAATCTAAT
Found at i:93654389 original size:30 final size:30
Alignment explanation
Indices: 93654354--93654417 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
93654344 TAATATTTTA
* *
93654354 ATTATATCAAATCATATTAA-ATTCTAATAT
1 ATTATATCAAATAATATTAATA-TATAATAT
93654384 ATTATATCAAATAATATTAATATATAATAT
1 ATTATATCAAATAATATTAATATATAATAT
93654414 ATTA
1 ATTA
93654418 AACTATATAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 30 0.97
31 1 0.03
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (30 bp):
ATTATATCAAATAATATTAATATATAATAT
Found at i:93654581 original size:14 final size:14
Alignment explanation
Indices: 93654562--93654600 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
93654552 TTTTTTCATT
93654562 TAATTTAGATTAAA
1 TAATTTAGATTAAA
**
93654576 TAATTTTTTATTAAA
1 TAA-TTTAGATTAAA
93654591 TAATTTAGAT
1 TAATTTAGAT
93654601 GGAATTTCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (14 bp):
TAATTTAGATTAAA
Found at i:93658773 original size:22 final size:22
Alignment explanation
Indices: 93658748--93658810 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
93658738 AAAAAACCCT
93658748 AACAGCCCCATACCCCCACCAC
1 AACAGCCCCATACCCCCACCAC
*
93658770 AACAGCCCCATACCCCCACTAC
1 AACAGCCCCATACCCCCACCAC
* *
93658792 AACAGTCCCATACCGCCAC
1 AACAGCCCCATACCCCCAC
93658811 AGTCCTCGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 38 1.00
ACGTcount: A:0.32, C:0.54, G:0.06, T:0.08
Consensus pattern (22 bp):
AACAGCCCCATACCCCCACCAC
Found at i:93659247 original size:13 final size:13
Alignment explanation
Indices: 93659208--93659248 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
93659198 AAGTATATAT
*
93659208 ATAAAAATAACAAA
1 ATAAAAA-AACAGA
93659222 ATAAAAAAA-AGA
1 ATAAAAAAACAGA
93659234 ATAAAAAAACAGA
1 ATAAAAAAACAGA
93659247 AT
1 AT
93659249 TTTTTACCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 11 0.44
13 7 0.28
14 7 0.28
ACGTcount: A:0.78, C:0.05, G:0.05, T:0.12
Consensus pattern (13 bp):
ATAAAAAAACAGA
Found at i:93659388 original size:15 final size:15
Alignment explanation
Indices: 93659355--93659384 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
93659345 TCCTCTCCCC
93659355 TCTCCCTCTCTCCTT
1 TCTCCCTCTCTCCTT
93659370 TCTCCC-CTCTCCTT
1 TCTCCCTCTCTCCTT
93659384 T
1 T
93659385 TCTCTCTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (15 bp):
TCTCCCTCTCTCCTT
Found at i:93659394 original size:22 final size:22
Alignment explanation
Indices: 93659342--93659394 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
93659332 GGCCGGAGCC
*
93659342 CTCTCCTCTCCCCTCTCCCTCT
1 CTCTCTTCTCCCCTCTCCCTCT
* *
93659364 CTC-CTTTCTCCCCTCTCCTTTT
1 CTCTC-TTCTCCCCTCTCCCTCT
93659386 CTCTCTTCT
1 CTCTCTTCT
93659395 TTTTTTTCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (22 bp):
CTCTCTTCTCCCCTCTCCCTCT
Found at i:93660286 original size:5 final size:5
Alignment explanation
Indices: 93660268--93660328 Score: 60
Period size: 5 Copynumber: 13.0 Consensus size: 5
93660258 AATGCTATAT
*
93660268 TATTA TATT- T-TTA TATTA TATTA CA-TA TATTA TATTA TATTCA TATT-
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATT-A TATTA
*
93660315 TTTTA TA-TA TATTA
1 TATTA TATTA TATTA
93660329 CAATGTATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
3 2 0.04
4 12 0.26
5 27 0.59
6 5 0.11
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:93660302 original size:19 final size:19
Alignment explanation
Indices: 93660278--93660330 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
93660268 TATTATATTT
93660278 TTATATTATATTACATATA
1 TTATATTATATTACATATA
*
93660297 TTATATTATATT-CATATT
1 TTATATTATATTACATATA
*
93660315 TTTTATATATATTACA
1 TTATAT-TATATTACA
93660331 ATGTATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 10 0.33
19 18 0.60
20 2 0.07
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATTATATTACATATA
Found at i:93663036 original size:26 final size:26
Alignment explanation
Indices: 93662998--93663159 Score: 299
Period size: 26 Copynumber: 6.2 Consensus size: 26
93662988 TGATACAAAT
93662998 TGATAATAG-GTTAGGTAAATGTTTCA
1 TGATAAT-GTGTTAGGTAAATGTTTCA
93663024 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
93663050 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
*
93663076 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
93663102 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
93663128 TGATAATGTGTTAGGTAAATGTTTCA
1 TGATAATGTGTTAGGTAAATGTTTCA
93663154 TGATAA
1 TGATAA
93663160 GAATTTCATG
Statistics
Matches: 133, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
25 1 0.01
26 132 0.99
ACGTcount: A:0.32, C:0.04, G:0.23, T:0.41
Consensus pattern (26 bp):
TGATAATGTGTTAGGTAAATGTTTCA
Found at i:93665211 original size:137 final size:136
Alignment explanation
Indices: 93664941--93665226 Score: 491
Period size: 137 Copynumber: 2.1 Consensus size: 136
93664931 GAGTAGTCTC
* * *
93664941 CCCAGATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGTCATACG
1 CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACG
*
93665006 GTTATCTGAATAAGGGGCTTAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
93665071 CTGTTA
131 CTGTTA
93665077 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATG-TTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
93665142 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTATC
65 GGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
93665207 ACTGTTA
130 ACTGTTA
**
93665214 CCTGAATGGGCTT
1 CCCAAATGGGCTT
93665227 AGGCCCAATA
Statistics
Matches: 141, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
136 19 0.13
137 122 0.87
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (136 bp):
CCCAAATGGGCTTGCATATGTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACG
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
CTGTTA
Found at i:93666481 original size:5 final size:6
Alignment explanation
Indices: 93666464--93666489 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
93666454 TTAAACCCTC
93666464 TATTTT TATTTT TATTTT TATTTT TA
1 TATTTT TATTTT TATTTT TATTTT TA
93666490 GCATTTCTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (6 bp):
TATTTT
Found at i:93668996 original size:18 final size:18
Alignment explanation
Indices: 93668955--93668995 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
93668945 CTAGATGTTT
*
93668955 TAAAAATATTAATTACCA
1 TAAAAATATCAATTACCA
*
93668973 TAAAAATATCAA-TACGA
1 TAAAAATATCAATTACCA
93668990 TAAAAA
1 TAAAAA
93668996 AAATTCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.61, C:0.10, G:0.02, T:0.27
Consensus pattern (18 bp):
TAAAAATATCAATTACCA
Found at i:93669270 original size:12 final size:12
Alignment explanation
Indices: 93669253--93669283 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
93669243 TCAGTTCCAT
93669253 CTACGAATAAAA
1 CTACGAATAAAA
93669265 CTACGAATAAAA
1 CTACGAATAAAA
93669277 CTACGAA
1 CTACGAA
93669284 GTATGCAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.55, C:0.19, G:0.10, T:0.16
Consensus pattern (12 bp):
CTACGAATAAAA
Found at i:93669701 original size:21 final size:21
Alignment explanation
Indices: 93669669--93669710 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
93669659 TAATATAAAA
93669669 TTTATAATATAT-ATAACTTTT
1 TTTATAATATATAAT-ACTTTT
93669690 TTTA-AATAATATAATACTTTT
1 TTTATAAT-ATATAATACTTTT
93669711 ACAATACGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.16
21 14 0.74
22 2 0.11
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTATAATATATAATACTTTT
Found at i:93672973 original size:131 final size:131
Alignment explanation
Indices: 93672739--93672996 Score: 444
Period size: 131 Copynumber: 2.0 Consensus size: 131
93672729 TTATTCATTC
* *
93672739 AAAAATTCTTTAAAACGAAGGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGGCCTATCGTG
1 AAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
* * *
93672804 CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTCTT
66 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTT
93672869 T
131 T
* * *
93672870 AAAAATTCTTTAAAACGAAAGTAATGTTTGATGTTTGGCAATTCGGGGAATCGTGCCCTATTGTG
1 AAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
93672935 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
66 CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGT
93672997 TCTCTAAATT
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
131 119 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (131 bp):
AAAAATTCTTTAAAACGAAAGCAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATCGTG
CTGGGTTGCAATTTCCCGTTTGTTCAAAATAATCGAATATCCCTTTAGAATTTCACTCATGTCTT
T
Found at i:93673954 original size:6 final size:6
Alignment explanation
Indices: 93673936--93673964 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
93673926 CAATATATAT
93673936 AGGGTA A-GGTA AGGGTA AGGGTA AGGGTA
1 AGGGTA AGGGTA AGGGTA AGGGTA AGGGTA
93673965 CCTTCTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.34, C:0.00, G:0.48, T:0.17
Consensus pattern (6 bp):
AGGGTA
Found at i:93674625 original size:19 final size:19
Alignment explanation
Indices: 93674601--93674665 Score: 64
Period size: 19 Copynumber: 3.4 Consensus size: 19
93674591 TTAATTAATT
93674601 TTAT-AAATTCGTAAGAAAA
1 TTATAAAATTCGTAA-AAAA
*
93674620 TTATAAAAAAT-GTAAAAAA
1 TTAT-AAAATTCGTAAAAAA
*
93674639 -TATAAAATTCTTAAAAAAA
1 TTATAAAATTCGT-AAAAAA
93674658 TTATAAAA
1 TTATAAAA
93674666 ATTATCATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
17 5 0.13
18 4 0.11
19 14 0.37
20 11 0.29
21 4 0.11
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.31
Consensus pattern (19 bp):
TTATAAAATTCGTAAAAAA
Found at i:93688930 original size:22 final size:23
Alignment explanation
Indices: 93688898--93688940 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
93688888 GGGTAATTGA
93688898 ACTTTCAAAATGTATCAAAAAGG
1 ACTTTCAAAATGTATCAAAAAGG
* *
93688921 ACTTT-AAAATTTTTCAAAAA
1 ACTTTCAAAATGTATCAAAAA
93688941 AAGCAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.33
Consensus pattern (23 bp):
ACTTTCAAAATGTATCAAAAAGG
Found at i:93691247 original size:39 final size:40
Alignment explanation
Indices: 93691179--93691258 Score: 126
Period size: 39 Copynumber: 2.0 Consensus size: 40
93691169 GAAAAAACGA
* *
93691179 GATGAGAAAAGCAAAAAAGGAAATGGAGTACTCGTAAACCT
1 GATGAGAAAAGC-AAAAAGCAAATGGAGTACTCATAAACCT
93691220 GATGAGAAAAGC-AAAAGCAAATGGAGTACTCATAAACCT
1 GATGAGAAAAGCAAAAAGCAAATGGAGTACTCATAAACCT
93691259 AAAAGCCAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 25 0.68
41 12 0.32
ACGTcount: A:0.49, C:0.14, G:0.23, T:0.15
Consensus pattern (40 bp):
GATGAGAAAAGCAAAAAGCAAATGGAGTACTCATAAACCT
Found at i:93691630 original size:39 final size:39
Alignment explanation
Indices: 93691576--93691651 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
93691566 AAGAAACCGT
* * *
93691576 GCCACTGTGGCTCCAAATCATCTTGCTACTATCCCTGCG
1 GCCACTGTCGCTCCAAATCATCTTGATACTATACCTGCG
93691615 GCCACTGTCGCTCCAAATCATCTTGATACTATACCTG
1 GCCACTGTCGCTCCAAATCATCTTGATACTATACCTG
93691652 TGGTGGCCGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.21, C:0.34, G:0.16, T:0.29
Consensus pattern (39 bp):
GCCACTGTCGCTCCAAATCATCTTGATACTATACCTGCG
Found at i:93691905 original size:2 final size:2
Alignment explanation
Indices: 93691898--93691935 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
93691888 TGCTGCTACA
93691898 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
93691936 TTGCTTTTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93693962 original size:24 final size:24
Alignment explanation
Indices: 93693930--93693977 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
93693920 ATGAGCTTAG
93693930 CAAACTTCAGCCCGGATCAAGTTA
1 CAAACTTCAGCCCGGATCAAGTTA
93693954 CAAACTTCAGCCCGGATCAAGTTA
1 CAAACTTCAGCCCGGATCAAGTTA
93693978 TTGCTATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (24 bp):
CAAACTTCAGCCCGGATCAAGTTA
Found at i:93695167 original size:20 final size:20
Alignment explanation
Indices: 93695131--93695168 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
93695121 CGGTCGACAT
*
93695131 ATGAAGATTGCTTTGCTTTG
1 ATGAAGATTACTTTGCTTTG
93695151 ATGAA-ATTACTTATGCTT
1 ATGAAGATTACTT-TGCTT
93695169 GCTCCATCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.45
Consensus pattern (20 bp):
ATGAAGATTACTTTGCTTTG
Found at i:93697827 original size:12 final size:12
Alignment explanation
Indices: 93697807--93697840 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
93697797 TAAATTAAAA
93697807 TTTAATAATTAT
1 TTTAATAATTAT
*
93697819 TTTATTAATTAT
1 TTTAATAATTAT
93697831 TTTAA-AATTA
1 TTTAATAATTA
93697841 AATGATTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TTTAATAATTAT
Found at i:93699074 original size:24 final size:25
Alignment explanation
Indices: 93699027--93699076 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
93699017 AACAAAATCG
* *
93699027 AACAAAACAGAATGAAGTAGAACAT
1 AACAAAACAGAATAAAGCAGAACAT
*
93699052 AACAAATCA-AATAAAGCAGAACAT
1 AACAAAACAGAATAAAGCAGAACAT
93699076 A
1 A
93699077 GCAGAGCAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.62, C:0.14, G:0.12, T:0.12
Consensus pattern (25 bp):
AACAAAACAGAATAAAGCAGAACAT
Found at i:93701890 original size:21 final size:21
Alignment explanation
Indices: 93701866--93701908 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
93701856 GTTTTTCTAA
93701866 AGCTTGTAATAAAAAGTTTAG
1 AGCTTGTAATAAAAAGTTTAG
*
93701887 AGCTTGTAATAAAAATTTTAG
1 AGCTTGTAATAAAAAGTTTAG
93701908 A
1 A
93701909 TTATCACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.35
Consensus pattern (21 bp):
AGCTTGTAATAAAAAGTTTAG
Found at i:93704213 original size:23 final size:25
Alignment explanation
Indices: 93704187--93704233 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
93704177 TATTATTCAT
*
93704187 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
93704210 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
93704234 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:93704554 original size:46 final size:47
Alignment explanation
Indices: 93704494--93704805 Score: 393
Period size: 46 Copynumber: 7.0 Consensus size: 47
93704484 TTTGACGTGA
* * * * * *
93704494 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
* ** * *
93704540 TGCCACGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
* *
93704586 TGCCATGGTATCTTTCAACCATGGTCTTACACATCTT-ATATCAAGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
93704632 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
93704678 TGCCATGGTATCTTTCAACCATGGTCTT--ACA----C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
93704716 TGCCATGGTATCTTTCAACTATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
93704762 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAG
93704806 AGAGCACACT
Statistics
Matches: 239, Mismatches: 16, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
38 32 0.13
39 1 0.00
40 3 0.01
41 1 0.00
43 1 0.00
44 3 0.01
45 8 0.03
46 187 0.78
47 3 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:93704724 original size:38 final size:39
Alignment explanation
Indices: 93704671--93704795 Score: 171
Period size: 38 Copynumber: 3.1 Consensus size: 39
93704661 CACATTTCAT
93704671 ATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 ATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
*
93704710 A-CAGGTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTC
1 ATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT--ACA---C
93704753 ATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
1 --ATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
93704794 AT
1 AT
93704796 TTCATATCAG
Statistics
Matches: 76, Mismatches: 2, Indels: 16
0.81 0.02 0.17
Matches are distributed among these distances:
38 32 0.42
39 3 0.04
40 3 0.04
41 1 0.01
43 1 0.01
44 3 0.04
45 1 0.01
46 32 0.42
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (39 bp):
ATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
Found at i:93704771 original size:84 final size:84
Alignment explanation
Indices: 93704630--93704794 Score: 321
Period size: 84 Copynumber: 2.0 Consensus size: 84
93704620 CTTATATCAA
93704630 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
93704695 ACCATGGTCTTACACACAG
66 ACCATGGTCTTACACACAG
*
93704714 GTTGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
93704779 ACCATGGTCTTACACA
66 ACCATGGTCTTACACA
93704795 TTTCATATCA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (84 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCA
ACCATGGTCTTACACACAG
Found at i:93704775 original size:130 final size:133
Alignment explanation
Indices: 93704494--93704805 Score: 427
Period size: 130 Copynumber: 2.3 Consensus size: 133
93704484 TTTGACGTGA
* * * * * *
93704494 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCACGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCACGGTATCTTTCAA
*
93704558 CCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTT
65 CCATGGTCTTA-TC--TACA--TCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTT
93704623 ATATCAAGT
125 ATATCAAGT
*
93704632 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCACGGTATCTTTCAAC
* *
93704697 CATGGTCTTA-C-ACA-CAGGTTGCCATGGTATCTTTCAACTATGGTCTTACACAT-TTCATATC
66 CATGGTCTTATCTACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTT-ATATC
*
93704758 AGGT
130 AAGT
93704762 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
93704806 AGAGCACACT
Statistics
Matches: 161, Mismatches: 11, Indels: 12
0.88 0.06 0.07
Matches are distributed among these distances:
129 2 0.01
130 89 0.55
133 2 0.01
136 1 0.01
137 4 0.02
138 63 0.39
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.38
Consensus pattern (133 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCACGGTATCTTTCAAC
CATGGTCTTATCTACATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATCTTATATCA
AGT
Found at i:93710768 original size:5 final size:5
Alignment explanation
Indices: 93710758--93710782 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
93710748 TTTTACACTA
93710758 CTTTT CTTTT CTTTT CTTTT CTTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT
93710783 GGGCGTTGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:93721859 original size:26 final size:24
Alignment explanation
Indices: 93721829--93721878 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
93721819 AAATAAAAAA
*
93721829 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
93721855 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
93721879 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:93721898 original size:21 final size:21
Alignment explanation
Indices: 93721849--93721907 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
93721839 ATAATAAATC
*
93721849 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
93721869 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
93721891 AAATAATAATAAAACAA
1 AAATAATATTAAAACAA
93721908 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:93723856 original size:17 final size:15
Alignment explanation
Indices: 93723814--93723855 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
93723804 ATTAAATCAG
93723814 TTAAAATATATAATA
1 TTAAAATATATAATA
* *
93723829 TTAACATATATGTATA
1 TTAAAATATAT-AATA
93723845 TTAAAAT-TATA
1 TTAAAATATATA
93723856 TTTGGAGATG
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
TTAAAATATATAATA
Found at i:93729828 original size:3 final size:3
Alignment explanation
Indices: 93729820--93729844 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
93729810 TCCTGTTTGT
93729820 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
93729845 AATGGAGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:93730245 original size:6 final size:7
Alignment explanation
Indices: 93730228--93730252 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
93730218 AGACTTTATT
93730228 TTTTTTA
1 TTTTTTA
93730235 TTTTTTA
1 TTTTTTA
93730242 TTTTTTA
1 TTTTTTA
93730249 TTTT
1 TTTT
93730253 ATGTCTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:93731612 original size:40 final size:40
Alignment explanation
Indices: 93731555--93731631 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
93731545 GTTGAAAGGA
* * * *
93731555 AGTTTTTTAAAAGTATTTTATTATAGATTAAAAAAATTGG
1 AGTTTTTCAAAAATATTTTACTAAAGATTAAAAAAATTGG
*
93731595 AGTTTTTCAAAAATATTTTACTAAATATTAAAAAAAT
1 AGTTTTTCAAAAATATTTTACTAAAGATTAAAAAAAT
93731632 GGTTGTAGTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.08, T:0.43
Consensus pattern (40 bp):
AGTTTTTCAAAAATATTTTACTAAAGATTAAAAAAATTGG
Found at i:93734594 original size:9 final size:9
Alignment explanation
Indices: 93734582--93734607 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
93734572 ATTTAAAAAA
93734582 TTAATTAAT
1 TTAATTAAT
93734591 TTAATTAAT
1 TTAATTAAT
93734600 TTAATTAA
1 TTAATTAA
93734608 AGTTAAAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TTAATTAAT
Found at i:93741649 original size:26 final size:27
Alignment explanation
Indices: 93741614--93741706 Score: 116
Period size: 28 Copynumber: 3.4 Consensus size: 27
93741604 TAAGCCCCCC
*
93741614 AAAAAAACCTAACCC-AAAAAAAAGAA
1 AAAAAAACCTAACCCAAAAAAAAAAAA
93741640 AAAAAAACCTAACCCTAAAAAAAAAAAA
1 AAAAAAACCTAACCC-AAAAAAAAAAAA
**
93741668 AAAAAAACCTAACCCCCCAAAAAAAAAA
1 AAAAAAACCTAA-CCCAAAAAAAAAAAA
**
93741696 CTAAAAACCTA
1 AAAAAAACCTA
93741707 GCCACCTACC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.25
28 41 0.69
29 3 0.05
ACGTcount: A:0.70, C:0.23, G:0.01, T:0.06
Consensus pattern (27 bp):
AAAAAAACCTAACCCAAAAAAAAAAAA
Found at i:93742498 original size:11 final size:11
Alignment explanation
Indices: 93742480--93742509 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
93742470 GTGTATATTG
93742480 TATATATTATA
1 TATATATTATA
*
93742491 TTTATATTATA
1 TATATATTATA
93742502 TATATATT
1 TATATATT
93742510 CTTAATGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TATATATTATA
Found at i:93744760 original size:12 final size:12
Alignment explanation
Indices: 93744740--93744775 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
93744730 ATTCATTTAA
93744740 CATTCATGCATT
1 CATTCATGCATT
*
93744752 CATTTATGCATT
1 CATTCATGCATT
*
93744764 CATTCATTCATT
1 CATTCATGCATT
93744776 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:93751659 original size:68 final size:70
Alignment explanation
Indices: 93751493--93751667 Score: 230
Period size: 71 Copynumber: 2.5 Consensus size: 70
93751483 CTTTTCAAGG
* *
93751493 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTGTT
93751558 GTTTT
66 GTTTT
* * * *
93751563 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTTAGTT-T
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTGT
93751626 ATGTTTT
65 -TGTTTT
** *
93751633 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
93751668 TTTAATTTTT
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
68 31 0.33
69 1 0.01
70 26 0.28
71 35 0.38
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTGTT
GTTTT
Found at i:93751819 original size:70 final size:69
Alignment explanation
Indices: 93751687--93751816 Score: 201
Period size: 70 Copynumber: 1.9 Consensus size: 69
93751677 TGTTTTTCAA
* * *
93751687 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-GAGCACGCTGAGGTATTTTCAATTTTTGT
93751752 GTTTT
65 GTTTT
*
93751757 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTC-AGCACG-TGAGGTATTTTTAATTTTT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGCACGCTGAGGTATTTTCAATTTTT
93751817 TTTCAATTTA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
67 18 0.32
68 5 0.09
70 33 0.59
ACGTcount: A:0.25, C:0.15, G:0.24, T:0.36
Consensus pattern (69 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGAGCACGCTGAGGTATTTTCAATTTTTGTG
TTTT
Found at i:93752015 original size:70 final size:70
Alignment explanation
Indices: 93751941--93752076 Score: 236
Period size: 70 Copynumber: 1.9 Consensus size: 70
93751931 TTTTTCAAAA
* * *
93751941 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTT
93752006 TAATT
66 TAATT
*
93752011 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTT
93752076 T
66 T
93752077 TCAATTTCTG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (70 bp):
TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTT
TAATT
Found at i:93752079 original size:14 final size:14
Alignment explanation
Indices: 93752060--93752089 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
93752050 CGCTGAGGTA
93752060 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
93752074 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
93752088 TT
1 TT
93752090 CAAAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:93752212 original size:73 final size:71
Alignment explanation
Indices: 93752075--93752979 Score: 363
Period size: 73 Copynumber: 11.7 Consensus size: 71
93752065 AATTTCTGTT
*
93752075 TTTCAATTTCTGTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTCTGTTTC--AAAAAATCAACTCATATTGC-AGAGGCGAGTTGAGCCTCAGGACACG
*
93752140 CTGAGGTAA
63 CCGAGGTAA
*
93752149 TTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGC-GAGGCGAGTTGAGCCTCAGGTCACACG
1 TTTCAATTTCTGTT-TCAAAAAATCAACTCATATTGCAGAGGCGAGTTGAGCCTCAGG--ACACG
*
93752213 CCGAGGTAT
63 CCGAGGTAA
* * * * *
93752222 TTTCAATTTCCGTTTTCAATTTTTGCCTTTCAAAA--AAATCA-ACT-CATATTGCGAGAGGTGA
1 TTTCAATTTCTG-TTTCAA------------AAAATCAACTCATATTGCAGA--G-G-C----GA
*
93752283 GTTGAGCCTCAGGACACGCTGAGGTAA
45 GTTGAGCCTCAGGACACGCCGAGGTAA
*
93752310 TTTCAATTTCTGTTGTCAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
1 TTTCAATTTCTGTT-TCAAAAAATCAACTCATATTGC-AGAGGCGAGTTGAGCCTCAGG--ACAC
*
93752375 GCCGAGGTAT
62 GCCGAGGTAA
* **** * *** *
93752385 TTTCAATTTCCGTTTTTCAATTTTTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTCAATTT-C-TGTTTCAA-----AAAATC---AACTC-A-T-AT-TGCAGAG--GCGAGTTGA
*
93752450 GCCTCAGGACACGCTGAGGTAA
50 GCCTCAGGACACGCCGAGGTAA
* * *
93752472 TTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGC-GAGCGTGAGTTGAGCCTCA--AGACG
1 TTTCAATTTCTGTT-TC-AAAAAATCAACTCATATTGCAGAG-GCGAGTTGAGCCTCAGGACACG
** * *
93752534 TTGAGTTAT
63 CCGAGGTAA
* * *
93752543 TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-CCTTA--AGAC
1 TTTCAATTTCTG--TTTC-AAAAAATCAACTCATATTGC-AGAGGCGAGTTGAGCCTCAGGACAC
* *
93752605 GCTGAGGTGTTTTCCATTT
62 GCCGA-G-G---T--A--A
*
93752624 TTTCTTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGATGGTGAGTTGAGCCTCAGGAC
1 TTTC--AATTTC-TGTTTCA-AAAAATCAACTCATATTGC-AGA-GGCGAGTTGAGCCTCAGGAC
*
93752689 ACGCTGAGGTAA
60 ACGCCGAGGTAA
** *
93752701 TTTCAATTTCTGTTTTC--AAAATCAACTCATATTGC-GAGAATGAGTTGAGCCTCAAGACACG-
1 TTTCAATTTCTG-TTTCAAAAAATCAACTCATATTGCAGAG-GCGAGTTGAGCCTCAGGACACGC
* *
93752762 TGAGGTAT
64 CGAGGTAA
* *
93752770 TTTC-ATTTCTGTTTTTCAAAAAAAAAACCAACTTATATTGC-GAGAG-GAGTTGAGCCTCAGTT
1 TTTCAATTTCTG--TTTC----AAAAAATCAACTCATATTGCAGAG-GCGAGTTGAGCCTCAG--
* * * *
93752832 CACATGCTGAGGTAT
57 GACACGCCGAGGTAA
* * *
93752847 TTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGCAGAGGTGAGTTGAGCTTCA-GATCAC
1 TTTCAATTTCTG--TTTC-AAAAAATCAACTCATATTGCAGAGGCGAGTTGAGCCTCAGGA-CAC
* *
93752911 ACACTGAGGTATTT
62 GC-C-GAGGTA--A
* * *
93752925 TTTCAATTTATATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 TTTCAATTTCT-GTTTCAAAAAATCAACTCATATTGC-AGAGGCGAGTTGAGCCT
93752980 TGAGTCACAT
Statistics
Matches: 663, Mismatches: 74, Indels: 185
0.72 0.08 0.20
Matches are distributed among these distances:
68 7 0.01
69 17 0.03
70 22 0.03
71 41 0.06
72 52 0.08
73 89 0.13
74 40 0.06
75 74 0.11
76 56 0.08
77 41 0.06
78 28 0.04
79 9 0.01
80 1 0.00
81 12 0.02
82 32 0.05
83 20 0.03
84 12 0.02
85 9 0.01
86 12 0.02
87 30 0.05
88 28 0.04
89 16 0.02
90 15 0.02
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (71 bp):
TTTCAATTTCTGTTTCAAAAAATCAACTCATATTGCAGAGGCGAGTTGAGCCTCAGGACACGCCG
AGGTAA
Found at i:93752270 original size:161 final size:162
Alignment explanation
Indices: 93751937--93753220 Score: 942
Period size: 161 Copynumber: 8.2 Consensus size: 162
93751927 TTTTTTTTTC
* * * * *
93751937 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* ** * * *
93752002 GTT-T--TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCTGAGGTATT
66 GTTGTCAAAAAATCAACTCGTATTGC-AGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
* *
93752062 TTCAATTTCTGTTTTTCAATTTCTG-TTTCAAAA
130 TTCAATTTCCGTTTTTCAATTTTTGCTTTC-AAA
93752095 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
93752160 GTTGTCAAAAAATCAACTCGTATTGC-GAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
66 GTTGTCAAAAAATCAACTCGTATTGCAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
93752224 TCAATTTCCG-TTTTCAATTTTTGCCTTTCAAA
131 TCAATTTCCGTTTTTCAATTTTTG-CTTTCAAA
93752256 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
93752321 GTTGTCAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
66 GTTGTCAAAAAATCAACTCGTATTGC-AGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
93752386 TTCAATTTCCGTTTTTCAATTTTTGCTTTC-AA
130 TTCAATTTCCGTTTTTCAATTTTTGCTTTCAAA
93752418 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * ** *
93752483 GTTGTCAAAAAAATCAACTCGTATTGC-GAGCGTGAGTTGAGCCTCA----AGACGTTGAGTTAT
66 GTTGTC-AAAAAATCAACTCGTATTGCAGAG-GCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
*
93752543 TTTCAA--------TTTC---TGTT--TTTCAAA
129 TTTCAATTTCCGTTTTTCAATTTTTGCTTTCAAA
* * *
93752564 AAAATCAACTCATATTGCGAGAGGTGAGTTGA-CCTTA--AGACGCTGAGGTGTTTTCCATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA-G-G---T--A--ATT
* *
93752626 TCTTAATTTCTTGTT-TCAAAAAAATCAACTCATATTGCGAGATGGTGAGTTGAGCCTCAGG--A
57 TC--AATTTC-TGTTGTC-AAAAAATCAACTCGTATTGC-AGA-GGCGAGTTGAGCCTCAGGTCA
* * *
93752688 CACGCTGAGG-----T-AA--------TTTCAATTTCTGTTTTC---
116 CACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTTTGCTTTCAAA
* * *
93752718 AAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTC-ATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * ** * * *
93752780 GTTTTTCAAAAAAAAAACCAACTTATATTGC-GAGAG-GAGTTGAGCCTCAGTTCACATGCTGAG
66 G-TTGTC----AAAAAATCAACTCGTATTGCAGAG-GCGAGTTGAGCCTCAGGTCACACGCCGAG
*
93752843 GTATTTTCAA--------TTT--A--TGT-CTTTCAAA
125 GTATTTTCAATTTCCGTTTTTCAATTTTTGCTTTCAAA
* * * *
93752868 AAAATCAACTCATATTGC-AGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCAAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTGAGGTA--ATTTCAAT
* * * * * * ***
93752932 TTATATTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGAGTCACATATCGAG
62 TTCTGTTGTCAAAAAATCAACTCGTATTGC-AGAGGCGAGTTGAGCCTCAG-GTCACACGCCGAG
* ** *** * **
93752996 GCA-TTTCAAAATCTACTTTTCAAGTTAAG-TTTC--A
125 GTATTTTCAATTTCCGTTTTTCAATTTTTGCTTTCAAA
* *
93753030 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG-TGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * * * * * *
93753094 GTTTTTAAAAAA--AGCTCATA-AGCGAGAGGTGAGTTGAACCTCA----AGACGCTGAGGT-TT
66 GTTGTCAAAAAATCAACTCGTATTGC-AGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
* *
93753151 TTCCATTTCTGTTCTTT-AATTTCTGTG-TTTCAAAA
130 TTCAATTTCCGTT-TTTCAATTT-T-TGCTTTC-AAA
*
93753186 AAAATCAGCT-ATATTGCGA-ATGGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCT
93753221 TGACTCACAC
Statistics
Matches: 957, Mismatches: 80, Indels: 181
0.79 0.07 0.15
Matches are distributed among these distances:
142 2 0.00
143 15 0.02
144 18 0.02
145 12 0.01
146 49 0.05
147 26 0.03
148 4 0.00
149 3 0.00
150 38 0.04
151 38 0.04
152 30 0.03
153 47 0.05
154 56 0.06
155 61 0.06
156 43 0.04
157 5 0.01
158 108 0.11
159 21 0.02
160 22 0.02
161 139 0.15
162 111 0.12
163 91 0.10
164 18 0.02
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (162 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAATCAACTCGTATTGCAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
TCAATTTCCGTTTTTCAATTTTTGCTTTCAAA
Found at i:93752300 original size:88 final size:87
Alignment explanation
Indices: 93752166--93752328 Score: 238
Period size: 88 Copynumber: 1.9 Consensus size: 87
93752156 TTCTGTTGTC
* *
93752166 AAAAAATCAACTCGTATTGCGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAATTT
*
93752231 CCGTTTTCAATTTTTGCCTTTCA
65 CCGTTGTCAATTTTTGCCTTTCA
* *
93752254 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAATT
1 AAAAAATCAACTCATATTGC--GAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAATT
*
93752318 TCTGTTGTCAA
64 TCCGTTGTCAA
93752329 AAAATCAACT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
88 48 0.72
90 19 0.28
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (87 bp):
AAAAAATCAACTCATATTGCGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAATTTC
CGTTGTCAATTTTTGCCTTTCA
Found at i:93752580 original size:72 final size:73
Alignment explanation
Indices: 93752398--93753163 Score: 603
Period size: 72 Copynumber: 10.2 Consensus size: 73
93752388 CAATTTCCGT
* * *
93752398 TTTTCAATTTTTG-CTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGA
93752461 CGCTGAGGTA
64 CGCTGAGGTA
* * * *
93752471 ATTTCAATTTCTG-TTGTCAAAAAAATCAACTCGTATTGCGAG-CGTGAGTTGAGCCTCAAGACG
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
* *
93752534 TTGAGTTA
66 CTGAGGTA
*
93752542 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-CCTTAAGACG
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
93752606 CTGAGGTGTTTTCCA
66 CTGA-G-G---T--A
*
93752621 TTTTTTCTTAATTTCT-TGTTTCAAAAAAATCAACTCATATTGCGAGATGGTGAGTTGAGCCTCA
1 --TTTTC--AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCTCA
*
93752685 GGACACGCTGAGGTA
61 --AGACGCTGAGGTA
* * *
93752700 ATTTCAATTTCTG-TTTTC---AAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
93752760 CGTGAGGTA
66 C-TGAGGTA
* *
93752769 TTTTC-ATTTCTGTTTTTCAAAAAAAAAACCAACTTATATTGCGAGA-G-GAGTTGAGCCTC-AG
1 TTTTCAATTTCTGTTTTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
93752830 TTCACATGCTGAGGTA
63 ---AC--GCTGAGGTA
* * *
93752846 TTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC--A--A
* *
93752910 CACACTGAGGTA
62 GACGCTGAGGTA
* * **
93752922 TTTTTTCAATTTAT-ATTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGAGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG-
** *
93752985 CACATATCGAGGCA
63 -AC-GCT-GAGGTA
* *
93752999 TTTCAAAATCTACTTTTCAAGTTAAGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTT-----TC-A-ATTTC-TGTT---TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
93753062 GCCTCAAGACACGTGAGGTA
55 GCCTCAAGACGC-TGAGGTA
* * *
93753082 TTTTCAATTTCTGTTTTT--AAAAAA--AGCTCATA-AGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
93753142 CTGAGGT-
66 CTGAGGTA
*
93753149 TTTTCCATTTCTGTT
1 TTTTCAATTTCTGTT
93753164 CTTTAATTTC
Statistics
Matches: 571, Mismatches: 61, Indels: 128
0.75 0.08 0.17
Matches are distributed among these distances:
67 14 0.02
68 17 0.03
69 42 0.07
70 21 0.04
71 22 0.04
72 69 0.12
73 42 0.07
74 37 0.06
75 59 0.10
76 46 0.08
77 43 0.08
78 28 0.05
79 2 0.00
80 2 0.00
81 8 0.01
82 33 0.06
83 25 0.04
84 9 0.02
85 1 0.00
86 47 0.08
87 4 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACG
CTGAGGTA
Found at i:93752724 original size:154 final size:149
Alignment explanation
Indices: 93752398--93753093 Score: 565
Period size: 154 Copynumber: 4.6 Consensus size: 149
93752388 CAATTTCCGT
* * *
93752398 TTTTCAATTTTTGCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACG
* *
93752463 CTGAGGTA-----ATTTC-AATTTC-TGTTGTCAAAAAAATCAACTCGTATTGCGAGCGTGAGTT
65 -TGAGGTATTTTCATTTCTAATTTCTTGTT-TCAAAAAAATCAACTCATATTGCGAGAGTGAGTT
* * *
93752521 GAGCCTCA-AGACGTTGAGTTA
128 GAGCCTCAGACACGCTGAGGTA
* *
93752542 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-CCTTAAGACG
1 TTTTCAATTTCTG-TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
93752606 C-TGAGGTGTTTTCCATTTTTTCTTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGATG
63 CGTGAGGTATTTT-CA---TTTC-TAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGA--
93752670 GTGAGTTGAGCCTCAGGACACGCTGAGGTA
121 GTGAGTTGAGCCTCA-GACACGCTGAGGTA
* *
93752700 ATTTCAATTTCTGTTTTC-AAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCAAGACACGT
1 TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
* **** * *
93752763 GAGGTATTTTCATTTCT-GTTT-TT-CAAAAAAAAAACCAACTTATATTGCGAGAG-GAGTTGAG
66 GAGGTATTTTCATTTCTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAG
*
93752824 CCTCAGTTCACATGCTGAGGTA
131 CCTCAG---ACACGCTGAGGTA
* * *
93752846 TTTTCAATTTATGTCTTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-A-GA
* *
93752910 CACACTGAGGTA-TTT--TTTC-AATTTATAT-TTTC-AAAAAATCAACTCATATTGCGAGAGGT
61 CAC-GTGAGGTATTTTCATTTCTAATTTCT-TGTTTCAAAAAAATCAACTCATATTGCGAGA-GT
* * ** *
93752969 GAGTTGAGCCTTGAGTCACATATCGAGGCA
123 GAGTTGAGCC-TCAGACAC-GCT-GAGGTA
* *
93752999 TTTCAAAATCTACTTTTCAAGTTAAGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTT-----TC-A-ATTTC-TG-T---TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
93753064 CTCAAGACACGTGAGGTATTTTCAATTTCT
54 CTCAAGACACGTGAGGTATTTTC-ATTTCT
93753094 GTTTTTAAAA
Statistics
Matches: 446, Mismatches: 50, Indels: 91
0.76 0.09 0.16
Matches are distributed among these distances:
143 7 0.02
144 25 0.06
145 13 0.03
146 58 0.13
147 27 0.06
148 2 0.00
149 7 0.02
150 39 0.09
151 30 0.07
152 14 0.03
153 33 0.07
154 67 0.15
155 14 0.03
156 15 0.03
157 5 0.01
158 24 0.05
159 1 0.00
160 10 0.02
161 8 0.02
162 21 0.05
163 18 0.04
164 8 0.02
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (149 bp):
TTTTCAATTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGT
GAGGTATTTTCATTTCTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGAGTGAGTTGAG
CCTCAGACACGCTGAGGTA
Found at i:93752781 original size:226 final size:228
Alignment explanation
Indices: 93752255--93752979 Score: 805
Period size: 226 Copynumber: 3.2 Consensus size: 228
93752245 TGCCTTTCAA
* *
93752255 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* * * *
93752320 TG-TTGTC-AAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGT
66 TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGG-GAGTTGAGCCT----TCAGACGCTGAGGT
*
93752383 ATTTTCAATTTCCGTTTTTCAATTT-TTGCTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
126 ATTTTCCATTT---TTTTT-AATTTCTTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAG
*
93752446 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTC
186 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* * * *
93752489 AAAAAAATCAACTCGTATTGCGAG-CGTGAGTTGAGCCTCAAG--ACGTTGAGTTATTTTCAATT
1 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATT
* *
93752551 TCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA-CCTTAAGACGCTGAGGTGT
64 TCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGG-GAGTTGAGCCTTCAGACGCTGAGGTAT
93752615 TTTCCATTTTTTCTTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGATGGTGAGTTGAG
128 TTTCCATTTTTT-TTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAG
93752680 CCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
191 CCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
*
93752718 -AAAATCAACTCATATTGCGAGA-ATGAGTTGAGCCTCAAGACACG-TGAGGTATTTTC-ATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
* *
93752779 TGTTTTTCAAAAAAAAAACCAACTTATATTGCGAGA-GGAGTTGAGCC-TCAGTTCACATGCTGA
66 TGTTTTTC---AAAAAAATCAACTCATATTGCGAGAGGGAGTTGAGCCTTCAG---AC--GCTGA
* *
93752842 GGTATTTT-CA----ATTT-ATGTC---TTTCAAAAAAATCAACTCATATTGC-AGAGGTGAGTT
123 GGTATTTTCCATTTTTTTTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * * *
93752897 GAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTC
188 GAGCCTCAG--GACACGCTGAGGTA--ATTTCAATTTCTGTTTTC
93752942 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
93752980 TGAGTCACAT
Statistics
Matches: 433, Mismatches: 31, Indels: 59
0.83 0.06 0.11
Matches are distributed among these distances:
220 16 0.04
221 3 0.01
222 37 0.09
224 15 0.03
225 4 0.01
226 73 0.17
227 46 0.11
228 35 0.08
229 71 0.16
230 22 0.05
231 2 0.00
232 12 0.03
233 21 0.05
234 7 0.02
235 48 0.11
236 21 0.05
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (228 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTC
TGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGGAGTTGAGCCTTCAGACGCTGAGGTATTTT
CCATTTTTTTTAATTTCTTGTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGACACGCTGAGGTAATTTCAATTTCTGTTTTC
Found at i:93753263 original size:91 final size:88
Alignment explanation
Indices: 93753139--93753332 Score: 218
Period size: 89 Copynumber: 2.2 Consensus size: 88
93753129 GAACCTCAAG
* * ** *
93753139 ACGCTGAGGT-TTTTCCATTTCTGTTCTTTAATTTCTGTGTTTCAAAAAAAATCAGCT-ATATTG
1 ACGCTGAGGTATTTTCAATTTCCGTTCTTTAATTTCTGCCTTTC---AAAAATCAACTCATATTG
93753202 CGA-ATGGTGAGTTGAGCCTT-GACTCAC
63 CGAGA-GGTGAGTTGAG-CTTAGA-TCAC
*
93753229 ACGCCGAGGTATTTTCAATTTCCGTT-TTTCAATTTCTGCCTTTCAAAAATCAACTCATATTGCG
1 ACGCTGAGGTATTTTCAATTTCCGTTCTTT-AATTTCTGCCTTTCAAAAATCAACTCATATTGCG
93753293 AGAGGTGAGTTGAGCTTCAGATCAC
65 AGAGGTGAGTTGAGCTT-AGATCAC
*
93753318 ACACTGAGGTATTTT
1 ACGCTGAGGTATTTT
93753333 TTTCAATTTA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
88 13 0.14
89 37 0.41
90 15 0.17
91 25 0.28
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.37
Consensus pattern (88 bp):
ACGCTGAGGTATTTTCAATTTCCGTTCTTTAATTTCTGCCTTTCAAAAATCAACTCATATTGCGA
GAGGTGAGTTGAGCTTAGATCAC
Found at i:93753888 original size:20 final size:20
Alignment explanation
Indices: 93753863--93753951 Score: 56
Period size: 20 Copynumber: 4.2 Consensus size: 20
93753853 ATAATAATAT
93753863 AAAATAATAATATGTACATA
1 AAAATAATAATATGTACATA
* *
93753883 AAAATACATATATATATATATGCA
1 AAAATA-ATA-ATATGTACAT--A
*
93753907 TATAATAA-AAGTATGTA-ATA
1 -AAAATAATAA-TATGTACATA
*
93753927 AATAATAATAATATCTACAATA
1 AA-AATAATAATATGTAC-ATA
93753949 AAA
1 AAA
93753952 GAAAATATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
19 1 0.02
20 17 0.32
21 6 0.11
22 16 0.30
23 6 0.11
24 2 0.04
25 5 0.09
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAATAATAATATGTACATA
Found at i:93754756 original size:29 final size:30
Alignment explanation
Indices: 93754724--93754788 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
93754714 TTTTTAGTTT
**
93754724 TTTTTTGTTAGGTTTTCTTTTT-TTTCTTC
1 TTTTTTGTTAGGTTAGCTTTTTCTTTCTTC
* * *
93754753 TTTTTTTTTGGGTTAGGTTTTTCTTTCTTC
1 TTTTTTGTTAGGTTAGCTTTTTCTTTCTTC
93754783 TTTTTT
1 TTTTTT
93754789 TTTTTTGGGT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.03, C:0.09, G:0.12, T:0.75
Consensus pattern (30 bp):
TTTTTTGTTAGGTTAGCTTTTTCTTTCTTC
Found at i:93754757 original size:30 final size:30
Alignment explanation
Indices: 93754723--93754791 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
93754713 TTTTTTAGTT
**
93754723 TTTTTTTGTTAGGTTTTCTTTTT-TTTCTTC
1 TTTTTTT-TTAGGTTAGCTTTTTCTTTCTTC
* *
93754753 TTTTTTTTTGGGTTAGGTTTTTCTTTCTTC
1 TTTTTTTTTAGGTTAGCTTTTTCTTTCTTC
93754783 TTTTTTTTT
1 TTTTTTTTT
93754792 TTTGGGTTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 11 0.32
30 23 0.68
ACGTcount: A:0.03, C:0.09, G:0.12, T:0.77
Consensus pattern (30 bp):
TTTTTTTTTAGGTTAGCTTTTTCTTTCTTC
Found at i:93754768 original size:34 final size:33
Alignment explanation
Indices: 93754721--93754811 Score: 132
Period size: 33 Copynumber: 2.8 Consensus size: 33
93754711 GGTTTTTTAG
*
93754721 TTTTTTTTT--GTTAGGTTTTCTTTTTTTTCTTC
1 TTTTTTTTTGGGTTAGGTTTT-TTTTTCTTCTTC
* *
93754753 TTTTTTTTTGGGTTAGGTTTTTCTTTCTTCTTT
1 TTTTTTTTTGGGTTAGGTTTTTTTTTCTTCTTC
93754786 TTTTTTTTTGGGTTAGGTTTTTTTTT
1 TTTTTTTTTGGGTTAGGTTTTTTTTT
93754812 GGGGGGCTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
32 9 0.17
33 34 0.64
34 10 0.19
ACGTcount: A:0.03, C:0.07, G:0.14, T:0.76
Consensus pattern (33 bp):
TTTTTTTTTGGGTTAGGTTTTTTTTTCTTCTTC
Found at i:93754774 original size:18 final size:18
Alignment explanation
Indices: 93754753--93754811 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
93754743 TTTTTTCTTC
93754753 TTTTTTTTTGGGTTAGGT
1 TTTTTTTTTGGGTTAGGT
*
93754771 TTTTCTTTCTT--CTT---T
1 TTTT-TTT-TTGGGTTAGGT
93754786 TTTTTTTTTGGGTTAGGT
1 TTTTTTTTTGGGTTAGGT
93754804 TTTTTTTT
1 TTTTTTTT
93754812 GGGGGGCTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
13 2 0.06
14 3 0.09
15 7 0.22
18 15 0.47
19 3 0.09
20 2 0.06
ACGTcount: A:0.03, C:0.05, G:0.17, T:0.75
Consensus pattern (18 bp):
TTTTTTTTTGGGTTAGGT
Found at i:93755668 original size:30 final size:31
Alignment explanation
Indices: 93755632--93755692 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
93755622 ATTTTGAAAA
*
93755632 ACAGAAATTAAAAGA-CTCAACTCAACTCTC
1 ACAGAAATTAAAAAAGCTCAACTCAACTCTC
*
93755662 ACAGAAATTAAAAAAGCTCAACTCACCTCTC
1 ACAGAAATTAAAAAAGCTCAACTCAACTCTC
93755693 GCAATATGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 14 0.50
31 14 0.50
ACGTcount: A:0.46, C:0.28, G:0.07, T:0.20
Consensus pattern (31 bp):
ACAGAAATTAAAAAAGCTCAACTCAACTCTC
Found at i:93755936 original size:79 final size:77
Alignment explanation
Indices: 93755810--93756040 Score: 261
Period size: 76 Copynumber: 3.0 Consensus size: 77
93755800 ACAGAATTGA
** ** * * * *
93755810 AAAAATAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGTGA
1 AAAAATAGAAATTGAAAATACCTCAG-CGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGA
93755874 GTTGATTTTTTTG
65 GTTGATTTTTTTG
* * * * *
93755887 AAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAA-GCTCAACTCACCTCTCGCAATAT
1 AAAAATAGAAATTG--AAAATACCTCAGCGCGTGAGC-CAAGGCTCAACTCACCTCTCGCAATAT
93755951 GAGTTGA-TTTTTTG
63 GAGTTGATTTTTTTG
* * *
93755965 AAAGATAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAATAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
93756030 TTGATTTTTTT
66 TTGATTTTTTT
93756041 TTTTGAAAGG
Statistics
Matches: 130, Mismatches: 18, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
75 2 0.02
76 46 0.35
77 17 0.13
78 19 0.15
79 44 0.34
80 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (77 bp):
AAAAATAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTG
Found at i:93756017 original size:76 final size:78
Alignment explanation
Indices: 93755847--93756385 Score: 278
Period size: 78 Copynumber: 6.9 Consensus size: 78
93755837 ATGTGACCCG
* * *
93755847 AGGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTG-AAAAATACCT
* * * *
93755912 CAGTGTGTGATCTGA
64 CAGCGCGTGAGCTCA
* *
93755927 A-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGATAGAAATTG-AAAATAGCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAATACCTCA
93755990 GCGCGTGAGC-CA
66 GCGCGTGAGCTCA
* ***
93756002 AGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTTTGAAAGGCAGAAATTGAAAAACG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTTGAAAAATAGAAATTG---AA--
** ** * *
93756067 GAAATTGAAAATACCTCGACGTGTGAC-CT
56 -AAA-T--ACCT-CAGCG-CGTGAG-CTCA
* * * * * *
93756096 AGGCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTG-AAATTACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTGAAAAATACCTC
* *
93756159 A--GCGTG-TCT-T
65 AGCGCGTGAGCTCA
*
93756169 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTG-AAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAATAGAAATTGAAAAATACCTC
* * **
93756233 A--GCATG-TCTTG
65 AGCGCGTGAGCTCA
** * *
93756244 AGGCTCAACTCATTTCT-ACAATATGAGTTGATTTTTTTTTTTGAAAAACAGAAATTG-AAAATA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-----TTTTTTGAAAAATAGAAATTGAAAAATA
* * **
93756307 CCTCA--GCATG-TCTTG
61 CCTCAGCGCGTGAGCTCA
** * * *
93756322 AGGCTCAACT-AATTCTCGCAATATGAGTTGA-ATTTTG-AAAACAGAAATTG-AAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAATACCTCA
93756383 GCG
66 GCG
93756386 TGTCTTGAGG
Statistics
Matches: 386, Mismatches: 44, Indels: 65
0.78 0.09 0.13
Matches are distributed among these distances:
71 23 0.06
72 5 0.01
73 40 0.10
74 42 0.11
75 21 0.05
76 47 0.12
77 5 0.01
78 86 0.22
79 30 0.08
80 1 0.00
81 20 0.05
82 2 0.01
85 2 0.01
88 3 0.01
89 11 0.03
90 8 0.02
91 2 0.01
92 3 0.01
93 5 0.01
94 30 0.08
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (78 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTGAAAAATACCTCA
GCGCGTGAGCTCA
Found at i:93756309 original size:78 final size:75
Alignment explanation
Indices: 93756057--93756404 Score: 426
Period size: 78 Copynumber: 4.7 Consensus size: 75
93756047 AAGGCAGAAA
* * * *
93756057 TTGAAAAACGGAAATTGAAAATACCTC-GACGTGTGACCT-AGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CGTGT--CTTGAGGCTCAACTCACTTCTCACAATA
*
93756120 CGAGTTGATTTTT
63 TGAGTTGATTTTT
* * * *
93756133 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCTT-AGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCACAATATGA
93756196 GTTGATTTTT
66 GTTGATTTTT
* *
93756206 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCT-ACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCACAATATGA
93756270 GTTGATTTTTTTTT
66 GTTGA----TTTTT
* * *
93756284 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACT-AATTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCACAATATGA
*
93756348 GTTGA--ATT
66 GTTGATTTTT
*
93756356 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCA
93756405 TTTTGAACAG
Statistics
Matches: 245, Mismatches: 18, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
71 42 0.17
72 6 0.02
73 39 0.16
74 43 0.18
75 40 0.16
76 4 0.02
77 5 0.02
78 66 0.27
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACTTCTCACAATATGA
GTTGATTTTT
Found at i:93756406 original size:149 final size:150
Alignment explanation
Indices: 93756057--93756407 Score: 441
Period size: 149 Copynumber: 2.4 Consensus size: 150
93756047 AAGGCAGAAA
* * * ***
93756057 TTGAAAAACGGAAATTGAAAATACCTC-GACGTGTGACCT-AGGCTCAACTCGCCTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CATGT--CTTGAGGCTCAACTCATTTCT-ACAATA
* * * *
93756120 CGAGTTGA----TTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCTTAGGCTCAACTCA
62 TGAGTTGATTTTTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTAGGCTCAACTCA
* *
93756181 CCTCTCGCAATATGAGTTGATTTTT
127 ACTCTCGCAATATGAGTTGA-TATT
93756206 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTACAATATGAG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTACAATATGAG
*
93756271 TTGATTTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACT-AAT
66 TTGATTTTTTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCTT-AGGCTCAACTCAAC
93756335 TCTCGCAATATGAGTTGA-ATT
129 TCTCGCAATATGAGTTGATATT
* *
93756356 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTT
93756408 TGAACAGAAA
Statistics
Matches: 179, Mismatches: 15, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
147 15 0.08
148 14 0.08
149 77 0.43
150 6 0.03
151 8 0.04
152 49 0.27
153 10 0.06
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.32
Consensus pattern (150 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTACAATATGAG
TTGATTTTTTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTAGGCTCAACTCAACTC
TCGCAATATGAGTTGATATT
Found at i:93756427 original size:49 final size:49
Alignment explanation
Indices: 93756361--93756456 Score: 174
Period size: 49 Copynumber: 2.0 Consensus size: 49
93756351 GAATTTTGAA
* *
93756361 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTTG
93756410 AACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTT
93756457 CTCGCAATAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (49 bp):
AACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTTG
Found at i:93756503 original size:121 final size:120
Alignment explanation
Indices: 93756290--93756528 Score: 397
Period size: 121 Copynumber: 2.0 Consensus size: 120
93756280 TTTTTTGAAA
* *
93756290 AACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTCTCGCAATATGAGTTGAAT
1 AACAGAAATTGAAAATACCTCAACATATCTTGAGGCTCAACTAATTCTCGCAATATGAGTTGAAT
* *
93756355 TTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTTTG
66 TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGCCTCAACTCATTTTG
* * *
93756410 AACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAAATACCTCAACATATCTTGAGGCTCAACT-AATTCTCGCAATATGAGTTGAA
*
93756475 TTTTGAAAACAGAATTTGAAATTACCTCAACGTGTCTTGAGCCTCAACTCATTT
65 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGCCTCAACTCATTT
93756529 CTCGCAATAT
Statistics
Matches: 110, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
120 38 0.35
121 72 0.65
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (120 bp):
AACAGAAATTGAAAATACCTCAACATATCTTGAGGCTCAACTAATTCTCGCAATATGAGTTGAAT
TTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGCCTCAACTCATTTTG
Found at i:93756521 original size:72 final size:72
Alignment explanation
Indices: 93756410--93756648 Score: 273
Period size: 72 Copynumber: 3.2 Consensus size: 72
93756400 ACTCATTTTG
*
93756410 AACAGAAATTGAAATTACCTCAACGTATCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
93756475 TTTTGAA
66 TTTTGAA
* *
93756482 AACAGAATTTGAAATTACCTCAACGTGTCTTGAGCCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
93756547 TTTTTTTTTTGAA
66 ------TTTTGAA
* * * * ** *
93756560 AGATAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACTTCTCGCAATATGAGT
1 A-ACAGAAATTGAAATTACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
*
93756624 TGATTTTTGAA
62 TGAATTTTGAA
*
93756635 AACAGAATTTGAAA
1 AACAGAAATTGAAA
93756649 AACAGATTGA
Statistics
Matches: 142, Mismatches: 15, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
72 62 0.44
74 11 0.08
75 8 0.06
78 8 0.06
79 17 0.12
81 35 0.25
82 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:93756839 original size:30 final size:30
Alignment explanation
Indices: 93756803--93756864 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
93756793 TTTTGAAAAA
93756803 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
93756833 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
93756863 CA
1 CA
93756865 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:93756932 original size:246 final size:237
Alignment explanation
Indices: 93756642--93757488 Score: 645
Period size: 241 Copynumber: 3.6 Consensus size: 237
93756632 GAAAACAGAA
* * * *
93756642 TTTGAAAAACAG--ATTGAAAATACCTC-GACATGTGA-CCGAGGCTCAACTCACTCTCGCAATG
1 TTTGAAAAACAGAAATTGAAAATAGCTCAG-CACGTGAGCCAAGGCTCAACTCACTCTCGCAATA
* * *
93756703 TGAGTTGATTTTTTGAAAAATATAATTGAAAAA-A-A-AAAAATACCTC-A-GTGTGATCTGAAG
65 TGAGTTGATTTTTTGAAAAACA-AATTGAAAAACAGATAAAAATACCTCGACATGTGA-CCGAAG
* * *
93756763 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATT-AAAAGACTCAACTCA
128 CTCAACTCACATCTCACAATATGAGTTGATTTTTTG-AAAACAGAAATTGAAAA-AAT-AACTC-
93756826 ACTCTCGCAGAAAT-TAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
189 A--CT-G-AGAAATCT--AAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTT
93756881 TTTGAAAAAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGC
1 TTTG----AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCAC-TCTCGC
*
93756946 AATATGAGTTGA-TTTTTG-AAAACAGAATCT-AAAAACAGATTTTGAAAATACCTCGACATGTG
61 AATATGAGTTGATTTTTTGAAAAACA-AAT-TGAAAAACAGA---TAAAAATACCTCGACATGTG
* * * *
93757008 ACCGAGGCTCAACTCACATCTCACAATGTGAGTTGATTTTTTTGAAAATATAAATTGAAAAAATA
121 ACCGAAGCTCAACTCACATCTCACAATATGAGTTGA-TTTTTTGAAAACAGAAATTGAAAAAATA
* * * * *
93757073 CCTCAGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
185 ACTCACTGAGAAATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * *
93757126 TTTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTTGCAATA
1 TTTGAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCA-CTCTCGCAATA
* * * *
93757191 TGAGTTGATTTTTTG--AAAC--A--G---AA-A-TTGAAAATACCTCGGC--GTGACCTGAGGC
65 TGAGTTGATTTTTTGAAAAACAAATTGAAAAACAGATAAAAATACCTCGACATGTGACC-GAAGC
* * * * * *
93757243 TCAACTCGCCTCTCACAATACGAGTTGATTTTTTGACAACAGAAATTG--AAATTACCTCAGC-G
129 TCAACTCACATCTCACAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAAAATAACTCA-CTG
* * *
93757305 TG---TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
193 AGAAAT-CTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
* * ** * *
93757347 TTTGAAAAACAGAAATTGAAAATACCTCAGCA--TG-TCTTGAGGCTCAACTCATTTCTCACAAT
1 TTTGAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCA-CTCTCGCAAT
* * * * *
93757409 ATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA
64 ATGAGTTGA--TTTTTTGAAA-A-ACAAATTGAAAAAC--AGA-TAAAAATACCTCGACATGTGA
*
93757474 CCTGAGGCTCAACTC
122 CC-GAAGCTCAACTC
93757489 GCCTTTCGCA
Statistics
Matches: 511, Mismatches: 48, Indels: 98
0.78 0.07 0.15
Matches are distributed among these distances:
218 1 0.00
219 30 0.06
221 40 0.08
222 34 0.07
223 1 0.00
224 14 0.03
225 1 0.00
226 23 0.05
227 30 0.06
228 14 0.03
229 1 0.00
232 3 0.01
233 2 0.00
235 1 0.00
237 15 0.03
238 1 0.00
239 23 0.05
241 68 0.13
242 7 0.01
243 8 0.02
245 41 0.08
246 55 0.11
247 22 0.04
248 2 0.00
249 1 0.00
251 11 0.02
252 35 0.07
253 17 0.03
254 10 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (237 bp):
TTTGAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTCTCGCAATAT
GAGTTGATTTTTTGAAAAACAAATTGAAAAACAGATAAAAATACCTCGACATGTGACCGAAGCTC
AACTCACATCTCACAATATGAGTTGATTTTTTGAAAACAGAAATTGAAAAAATAACTCACTGAGA
AATCTAAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
Found at i:93757130 original size:166 final size:159
Alignment explanation
Indices: 93756597--93757686 Score: 598
Period size: 166 Copynumber: 6.7 Consensus size: 159
93756587 GTGAGCCAAG
*
93756597 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTTGAAAAACAGATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAA-TT-AAAAACAGATTGAAAA
93756662 TACCTCGACATGTGACCGAGGCTCAACTCACTCTCGCAATGTGAGTTGA-TTTTTTGAAAAATAT
64 TACCTCGACATGTGACCGAGGCTCAACTCACTCTCGCAATGTGAGTTGATTTTTTTGAAAAATA-
93756726 AATTGAAAAAAAAAAAATACCTCAGTGTG-ATCTGAA
128 AATTG-----AAAAAAATACCTCAGTGTGTATCTGAA
* *
93756762 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCA-ACT-C
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-AAAACAG-AATTAAAA-A--CAGATTGA
* * * ** * *
93756825 AACT-CTCGCAGAAAT-T-A-AAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTGA
61 AAATAC-CTC-GACATGTGACCGAGGCTCAACTCA-CTCTCGCAATGTGAGTTG-ATTTTTTTGA
* ** * * * *
93756886 AAAAAAAACAGAAATTGAAAATAGCTCAGCACGTG-AGC-CAA
122 AAAATAAATTGAAA---AAAATACCTCAG--TGTGTATCTGAA
*
93756927 GGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAACAGAATCTAAAAACAGATTTTGAA
1 -GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAT-TAAAAACAGA--TTGAA
*
93756992 AATACCTCGACATGTGACCGAGGCTCAACTCACATCTCACAATGTGAGTTGATTTTTTTGAAAAT
62 AATACCTCGACATGTGACCGAGGCTCAACTCAC-TCTCGCAATGTGAGTTGATTTTTTTGAAAA-
93757057 ATAAATTG-AAAAAATACCTCAGTGTGTAATCTGAA
125 ATAAATTGAAAAAAATACCTCAGTGTGT-ATCTGAA
*** * *
93757092 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA-AG----ACAGA-A-ATTGAAAATA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTAAAAACAGATTGAAAATA
* ** * * * * *
93757150 GCTC-AGCGCGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTTGAAACAGA
66 CCTCGA-CATGTGA-CCGAGGCTCAACTCA-CTCTCGCAATGTGAGTTGATTTTTTTGAAAAATA
* * * *
93757213 AATTG---AAAATACCTCGGCGTG-ACCTGAG
128 AATTGAAAAAAATACCTCAGTGTGTATCTGAA
* * * * *
93757241 GCTCAACTCGCCTCTCACAATACGAGTTGATTTTTTGACAACAG--------A-A-ATTGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAACAGAATTAAAAACAGATTGAAAAT
* *
93757296 ACCTC-AGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAAC
65 ACCTCGA-CATGTGACC-GAGGCTCAACTCA-CTCTCGCAATGTGAGTTGATTTTTTTG-AAAA-
* ** * *
93757357 AGAAATTG---AAAATACCTCAGCATGTCT-TGAG
125 ATAAATTGAAAAAAATACCTCAGTGTGTATCTGAA
** * *
93757388 GCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTTGAAAGACAGAAATTGAAAAACGGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAA-ACAG-AATT-AAAAAC--AGAT
* * * * ***
93757453 TGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTTTCGCAATACAAGTTGATTTTTAAA
58 TGAAAATACCTCGACATGTGACC-GAGGCTCAACTC-ACTCTCGCAATGTGAGTTGATTTTT---
*** ** * * * *
93757518 AACATAATAATGAAAACAGAAATTGAAAATACCTCGGCGTG-ACCTGAG
118 TTGA-AA-AAT--AAATTGAAA---AAAATACCTCAGTGTGTATCTGAA
* * * *
93757566 GCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTCAAAAACATAATATGAAGACAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATT-TTT-GAAAACAGAAT-TAAAAACAG--ATTGA
* *
93757631 AAATACCTC-AGCA--TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
61 AAATACCTCGA-CATGTGACC-GAGGCTCAACTCA-CTCTCGCAATGTGAGTTGATTTT
93757687 GAAAAAGTAG
Statistics
Matches: 736, Mismatches: 107, Indels: 156
0.74 0.11 0.16
Matches are distributed among these distances:
144 2 0.00
145 41 0.06
146 3 0.00
147 69 0.09
149 41 0.06
150 11 0.01
151 16 0.02
153 8 0.01
154 27 0.04
155 29 0.04
156 2 0.00
157 1 0.00
158 3 0.00
160 1 0.00
161 3 0.00
162 5 0.01
163 4 0.01
164 89 0.12
165 79 0.11
166 100 0.14
167 43 0.06
168 33 0.04
169 1 0.00
170 3 0.00
171 1 0.00
172 4 0.01
173 38 0.05
175 24 0.03
176 7 0.01
177 3 0.00
178 45 0.06
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.28
Consensus pattern (159 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAATTAAAAACAGATTGAAAATA
CCTCGACATGTGACCGAGGCTCAACTCACTCTCGCAATGTGAGTTGATTTTTTTGAAAAATAAAT
TGAAAAAAATACCTCAGTGTGTATCTGAA
Found at i:93757313 original size:73 final size:74
Alignment explanation
Indices: 93756977--93757444 Score: 518
Period size: 74 Copynumber: 6.2 Consensus size: 74
93756967 ACAGAATCTA
** * * *
93756977 AAAACAGATTTTGAAAATACCTC-GACATGTGACC-GAGGCTCAACTCACATCTCACAATGTGAG
1 AAAACAGAAATTGAAAATACCTCAG-C--GTGTCCTGAGGCTCAACTCACCTCTCACAATATGAG
93757040 TTGATTTTTTTG
63 TTGATTTTTTTG
* * * * * *
93757052 AAAATATAAATTGAAAAAATACCTCAGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATATGA
1 AAAACAGAAATTG--AAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCACAATATGA
93757117 GTTGATTTTTTTG
62 GTTGATTTTTTTG
* * * **
93757130 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGA
1 AAA-ACAGAAATTGAAAATACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCACAATATGA
93757194 GTTGA-TTTTTTG
62 GTTGATTTTTTTG
* * * *
93757206 -AAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
93757270 A-TTTTTTG
66 ATTTTTTTG
* * *
93757278 ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
93757343 A-TTTTTTG
66 ATTTTTTTG
* * **
93757351 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTT
93757416 GATTTTTTTTG
65 GA-TTTTTTTG
93757427 AAAGACAGAAATTGAAAA
1 AAA-ACAGAAATTGAAAA
93757445 ACGGAAATTG
Statistics
Matches: 335, Mismatches: 42, Indels: 31
0.82 0.10 0.08
Matches are distributed among these distances:
71 2 0.01
72 40 0.12
73 65 0.19
74 78 0.23
75 17 0.05
76 28 0.08
77 51 0.15
78 42 0.13
79 12 0.04
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (74 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
ATTTTTTTG
Found at i:93757373 original size:147 final size:149
Alignment explanation
Indices: 93756987--93757444 Score: 550
Period size: 147 Copynumber: 3.0 Consensus size: 149
93756977 AAAACAGATT
** * * *
93756987 TTGAAAATACCTCGACATGTGA-CCGAGGCTCAACTCACATCTCACAATGTGAGTTGATTTTTTT
1 TTGAAAATACCTC-ACGCGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
* * * * * * *
93757051 GAAAATATAAATTGAAAAAATACCTCAGTGTGTAATCTGAAGCTCAACTCACCTCTCGCAATATG
64 GAAAACAGAAATTG--AAAATACCTC-G-GCGTGACCTGAGGCTCAACTCACCTCTCACAATATG
93757116 AGTTGATTTTTTTGAAAGACAGAAA
125 AGTTGATTTTTTTGAAAGACAGAAA
* * *
93757141 TTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCTCA-CGCGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* *
93757206 -AAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCGCCTCTCACAATACGAGTTG
65 AAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
*
93757270 A-TTTTTTGACA-ACAGAAA
130 ATTTTTTTGAAAGACAGAAA
* *
93757288 TTGAAATTACCTCA-GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
1 TTGAAAATACCTCACGCGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
* * * * **
93757351 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
65 -AAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTT
93757416 GATTTTTTTTGAAAGACAGAAA
129 GA-TTTTTTTGAAAGACAGAAA
93757438 TTGAAAA
1 TTGAAAA
93757445 ACGGAAATTG
Statistics
Matches: 263, Mismatches: 33, Indels: 20
0.83 0.10 0.06
Matches are distributed among these distances:
144 2 0.01
145 43 0.16
147 76 0.29
148 9 0.03
149 44 0.17
150 14 0.05
151 10 0.04
153 11 0.04
154 24 0.09
155 30 0.11
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (149 bp):
TTGAAAATACCTCACGCGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGA
AAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTGA
TTTTTTTGAAAGACAGAAA
Found at i:93757443 original size:14 final size:14
Alignment explanation
Indices: 93757424--93757458 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
93757414 TTGATTTTTT
*
93757424 TTGAAAGACAGAAA
1 TTGAAAAACAGAAA
*
93757438 TTGAAAAACGGAAA
1 TTGAAAAACAGAAA
93757452 TTGAAAA
1 TTGAAAA
93757459 TACCTCGGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:93757653 original size:87 final size:85
Alignment explanation
Indices: 93757352--93757692 Score: 405
Period size: 87 Copynumber: 3.9 Consensus size: 85
93757342 GATTTTTTGA
* * ** *
93757352 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
93757417 ATTTTTTTTGAAAGACAGAA-ATTG
66 A---TTTTT-AAAAACATAATA-TG
* * * * * **
93757441 AAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCTTTCGCAATACAAG
1 -AAAACAGAAATTGAAAATACCTCAGC--ATGACCTGAGGCTCAACTCACCTCTCGCAATATGAG
93757506 TTGATTTTTAAAAACATAATAATG
63 TTGATTTTTAAAAACATAAT-ATG
* *
93757530 AAAACAGAAATTGAAAATACCTCGGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
93757595 ATTCTTTCAAAAACATAATATG
66 ATT-TTT-AAAAACATAATATG
* *
93757617 AAGACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGCTG
1 AAAACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
93757682 ATTTTGAAAAA
66 ATTTTTAAAAA
93757693 GTAGAAATTA
Statistics
Matches: 221, Mismatches: 24, Indels: 17
0.84 0.09 0.06
Matches are distributed among these distances:
85 5 0.02
86 40 0.18
87 70 0.32
88 44 0.20
89 7 0.03
90 25 0.11
92 30 0.14
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26
Consensus pattern (85 bp):
AAAACAGAAATTGAAAATACCTCAGCATGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTAAAAACATAATATG
Found at i:93757801 original size:73 final size:72
Alignment explanation
Indices: 93757709--93757898 Score: 256
Period size: 72 Copynumber: 2.6 Consensus size: 72
93757699 ATTAAAAGGT
* * * * * *
93757709 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGAAAAACAAAAATTGAAAATACCTCAGCGTGC
*
93757774 CCTGAGGC
65 CCCGAGGC
**
93757782 TCAACTCACCTCTCGCAATATGAGTTGAAATT-AAAACACAAAAATTGAAAATACCTCAGCGTGC
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAA-ACAAAAATTGAAAATACCTCAGCGTGC
93757846 CCCGAGGC
65 CCCGAGGC
* *
93757854 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACCAAAAT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAAT
93757899 AAAAGGCTTA
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
71 3 0.03
72 68 0.67
73 31 0.30
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (72 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGCC
CCGAGGC
Found at i:93758057 original size:70 final size:71
Alignment explanation
Indices: 93757937--93758160 Score: 324
Period size: 72 Copynumber: 3.1 Consensus size: 71
93757927 GAGTCAATTT
*
93757937 AAAACTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
93758002 AAAAC-
66 AAAACA
* * ** * * ** *
93758007 AAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAAATTA
1 AAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
93758072 AAACACA
66 AAA-ACA
*
93758079 AAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
1 AAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
93758144 AAAAACA
66 -AAAACA
93758151 AAAATTAAAA
1 AAAATTAAAA
93758161 GGCTTAACTC
Statistics
Matches: 130, Mismatches: 21, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
70 58 0.45
71 2 0.02
72 67 0.52
73 3 0.02
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.24
Consensus pattern (71 bp):
AAAATTAAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTG
AAAACA
Found at i:93758083 original size:257 final size:257
Alignment explanation
Indices: 93757709--93758323 Score: 1081
Period size: 257 Copynumber: 2.4 Consensus size: 257
93757699 ATTAAAAGGT
* * * *
93757709 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATT-TTGA-AAACA-AAATTAAAAATACCTCAACGTGT
* *
93757774 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTC
63 CTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTC
*
93757839 AGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACCAAAA-TAAAA
128 AGCGTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAA
*
93757903 GGCTTAACTCACCTCTCGCAGTATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCCGAGG
193 GGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTG-CCCGAGG
93757968 C
257 C
*
93757969 TCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAACAAAATTAAAAATACCTCAACGTGTCTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAAATACCTCAACGTGTCTT
93758034 GAGGCTCAACTCATCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
66 GAGGCTCAACTCATCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
93758099 GTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGC
131 GTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGC
93758164 TTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCGAGGC
196 TTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCGAGGC
*
93758226 TCAACTCACTTCTCGCAATATGAGTTGATTTTG-AAACAACAATTAAAAATACCTCAACGTGTCT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAA-AATTAAAAATACCTCAACGTGTCT
93758290 TGAGGCTCAACTCATCTCTCGCAATATGAGTTGA
65 TGAGGCTCAACTCATCTCTCGCAATATGAGTTGA
93758324 TTTTCTTGAA
Statistics
Matches: 342, Mismatches: 11, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
256 6 0.02
257 238 0.70
258 66 0.19
259 4 0.01
260 28 0.08
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.26
Consensus pattern (257 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAACAAAATTAAAAATACCTCAACGTGTCTT
GAGGCTCAACTCATCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGC
GTGCCCCGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGC
TTAACTCACCTCTCGCAATATGAGTCAATTTAAAACTAAAAATACCTCAGCGTGCCCGAGGC
Found at i:93758240 original size:62 final size:66
Alignment explanation
Indices: 93758160--93758320 Score: 179
Period size: 70 Copynumber: 2.4 Consensus size: 66
93758150 AAAAATTAAA
* * *
93758160 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTT-AA-AAC-TAAAAATACCTCAGCGTG-CCC
1 AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
93758221 G
66 G
* *
93758222 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAACAACAATTAAAAATACCTCAACGTG
1 AGGCTCAACTCACTTCTCGCAATATGAG-TCAATTT-AAACAAC-A-TAAAAATACCTCAACGTG
**
93758287 TCTTG
62 TCCCG
93758292 AGGCTCAACTCA-TCTCTCGCAATATGAGT
1 AGGCTCAACTCACT-TCTCGCAATATGAGT
93758321 TGATTTTCTT
Statistics
Matches: 83, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
62 26 0.31
63 5 0.06
65 2 0.02
66 3 0.04
69 19 0.23
70 28 0.34
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (66 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTCAATTTAAACAACATAAAAATACCTCAACGTGTCCC
G
Found at i:93763356 original size:12 final size:12
Alignment explanation
Indices: 93763336--93763371 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
93763326 TGGGATATGC
*
93763336 AATGTATGAATG
1 AATGCATGAATG
93763348 AATGCATGAATG
1 AATGCATGAATG
93763360 AATGCATGAATG
1 AATGCATGAATG
93763372 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:93765872 original size:12 final size:12
Alignment explanation
Indices: 93765855--93765884 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
93765845 GGTGGTAGAC
93765855 AATGGGAGGAAA
1 AATGGGAGGAAA
93765867 AATGGGAGGAAA
1 AATGGGAGGAAA
93765879 AATGGG
1 AATGGG
93765885 GCAAGTGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.43, T:0.10
Consensus pattern (12 bp):
AATGGGAGGAAA
Found at i:93765974 original size:17 final size:17
Alignment explanation
Indices: 93765954--93766016 Score: 56
Period size: 17 Copynumber: 3.7 Consensus size: 17
93765944 TTTTTTCTTC
93765954 TTTTTTTTTGGGTTAAG
1 TTTTTTTTTGGGTTAAG
** ***
93765971 TTTTTCTTTT-TCTTCTT
1 TTTTT-TTTTGGGTTAAG
*
93765988 TTTTTTTTTGGGTTAGG
1 TTTTTTTTTGGGTTAAG
93766005 TTTTTTTTTGGG
1 TTTTTTTTTGGG
93766017 GGGCTTAATG
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
16 4 0.12
17 26 0.76
18 4 0.12
ACGTcount: A:0.05, C:0.05, G:0.19, T:0.71
Consensus pattern (17 bp):
TTTTTTTTTGGGTTAAG
Found at i:93765992 original size:34 final size:34
Alignment explanation
Indices: 93765923--93766013 Score: 129
Period size: 34 Copynumber: 2.8 Consensus size: 34
93765913 GTTTTTTTAG
93765923 TTTTTTTTT--GTTAGGTTTTTC-TTTTTTCTTC
1 TTTTTTTTTGGGTTAGGTTTTTCTTTTTTTCTTC
*
93765954 TTTTTTTTTGGGTTAAGTTTTTCTTTTTCTTCTT-
1 TTTTTTTTTGGGTTAGGTTTTTCTTTTT-TTCTTC
93765988 TTTTTTTTTGGGTTAGGTTTTT-TTTT
1 TTTTTTTTTGGGTTAGGTTTTTCTTTT
93766014 GGGGGGCTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.17
33 15 0.28
34 25 0.46
35 5 0.09
ACGTcount: A:0.04, C:0.07, G:0.13, T:0.76
Consensus pattern (34 bp):
TTTTTTTTTGGGTTAGGTTTTTCTTTTTTTCTTC
Found at i:93767981 original size:18 final size:18
Alignment explanation
Indices: 93767957--93767997 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
93767947 TGCTTATCCT
* *
93767957 AAATTTTTTTAATTAAAA
1 AAATTTTATTAACTAAAA
*
93767975 TAATTTTATTAACTAAAA
1 AAATTTTATTAACTAAAA
93767993 AAATT
1 AAATT
93767998 AAAATTTGAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATTTTATTAACTAAAA
Found at i:93768154 original size:22 final size:24
Alignment explanation
Indices: 93768126--93768179 Score: 85
Period size: 22 Copynumber: 2.3 Consensus size: 24
93768116 ATATATTATG
*
93768126 AATTTATTAATCTAAA-TTATTAT
1 AATTTATTAATCTAAATTTATAAT
93768149 -ATTTATTAATCTAAATTTATAAT
1 AATTTATTAATCTAAATTTATAAT
93768172 AATTTATT
1 AATTTATT
93768180 TTATTTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 15 0.54
23 6 0.21
24 7 0.25
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
AATTTATTAATCTAAATTTATAAT
Found at i:93770026 original size:23 final size:23
Alignment explanation
Indices: 93769944--93770030 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
93769934 CCTGATCAGT
*
93769944 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
93769966 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
93769986 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
93770009 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
93770031 TCGATAAAGG
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:93770424 original size:15 final size:15
Alignment explanation
Indices: 93770399--93770455 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
93770389 TCATATATAT
93770399 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
93770415 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
93770430 AATAATTTCAATC-A
1 TATAAATTCAATCAA
93770444 TATAAATTCAAT
1 TATAAATTCAAT
93770456 AAATTCATCG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
14 11 0.30
15 22 0.59
16 4 0.11
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:93771734 original size:5 final size:5
Alignment explanation
Indices: 93771721--93771752 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
93771711 TTCTTTAGTT
93771721 TATATA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA T
93771753 TAAAACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:93773583 original size:15 final size:15
Alignment explanation
Indices: 93773563--93773597 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
93773553 AAGCTTTGAT
* *
93773563 ATATTTCACTATATG
1 ATATTTCAATATATA
93773578 ATATTTCAATATATA
1 ATATTTCAATATATA
93773593 ATATT
1 ATATT
93773598 GAATTCCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.49
Consensus pattern (15 bp):
ATATTTCAATATATA
Found at i:93787451 original size:10 final size:10
Alignment explanation
Indices: 93787435--93787473 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
93787425 AATTTTAGCT
93787435 TTTATCTTTA
1 TTTATCTTTA
*
93787445 ATTATCTTTA
1 TTTATCTTTA
93787455 TTTAT-TTGTA
1 TTTATCTT-TA
93787465 TTTATCTTT
1 TTTATCTTT
93787474 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.08, G:0.03, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:93789878 original size:33 final size:33
Alignment explanation
Indices: 93789814--93789886 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
93789804 GCTAATATGT
* ** *
93789814 TTGATTTCCAACAGCAGATACAACGGTAAACAG
1 TTGATTTCCAACAGCAAATACAACGACAAACAC
* * *
93789847 TTGATTTCCAATAGCAAATTCTACGACAAACAC
1 TTGATTTCCAACAGCAAATACAACGACAAACAC
93789880 TTGATTT
1 TTGATTT
93789887 TCAAAAGGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.29
Consensus pattern (33 bp):
TTGATTTCCAACAGCAAATACAACGACAAACAC
Found at i:93791304 original size:23 final size:23
Alignment explanation
Indices: 93791274--93791332 Score: 84
Period size: 23 Copynumber: 2.6 Consensus size: 23
93791264 GCAACCCAAT
*
93791274 TTTTATTTTTTTATTATTCT-TTC
1 TTTTATTTTTTTATTATT-TATTA
*
93791297 TTTTATTTTATTATTATTTATTA
1 TTTTATTTTTTTATTATTTATTA
93791320 TTTTATTTTTTTA
1 TTTTATTTTTTTA
93791333 AATATTAATA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
22 1 0.03
23 31 0.97
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (23 bp):
TTTTATTTTTTTATTATTTATTA
Found at i:93792590 original size:95 final size:96
Alignment explanation
Indices: 93792425--93792621 Score: 279
Period size: 95 Copynumber: 2.1 Consensus size: 96
93792415 AATTATTTTT
* * *
93792425 AAAAAATTAGGATTGTATTGGGCTAAGTAACCGGGGTGAGGTGCTTGGCTGTCATCCCTCTTCGC
1 AAAAAATTAGGAGTATATTAGGCTAAGTAACCGGGGTGAGGTGCTTGGCTGTCATCCCTCTTCGC
*
93792490 ATCAAAAGGTTCAATATGTTCTTAAG-AAAA
66 ATCAAAAGGTTCAATATATTCTTAAGTAAAA
* * * * * * *
93792520 TAAAAATTAGGAGTATGTTAGGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTTATCTCTCTTCTC
1 AAAAAATTAGGAGTATATTAGGCTAAGTAACCGGGGTGAGGTGCTTGGCTGTCATCCCTCTTCGC
*
93792585 GTCAAAAGGTTCAATATATTCTTAAGTAAAA
66 ATCAAAAGGTTCAATATATTCTTAAGTAAAA
93792616 AAAAAA
1 AAAAAA
93792622 AGAGATGTAT
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
95 79 0.90
96 9 0.10
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.30
Consensus pattern (96 bp):
AAAAAATTAGGAGTATATTAGGCTAAGTAACCGGGGTGAGGTGCTTGGCTGTCATCCCTCTTCGC
ATCAAAAGGTTCAATATATTCTTAAGTAAAA
Found at i:93793124 original size:36 final size:36
Alignment explanation
Indices: 93793084--93793156 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
93793074 AATTGGGCCA
93793084 ACATGCGAAGTAGGAGAGAAGTGGTGCCAAAAATGC
1 ACATGCGAAGTAGGAGAGAAGTGGTGCCAAAAATGC
93793120 ACATGCGAAGTAGGAGAGAAGTGGTGCCAAAAATGC
1 ACATGCGAAGTAGGAGAGAAGTGGTGCCAAAAATGC
93793156 A
1 A
93793157 AAGTGTGGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.40, C:0.14, G:0.33, T:0.14
Consensus pattern (36 bp):
ACATGCGAAGTAGGAGAGAAGTGGTGCCAAAAATGC
Found at i:93793295 original size:10 final size:10
Alignment explanation
Indices: 93793279--93793317 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
93793269 AATTTTAGCT
93793279 TTTATCTTTA
1 TTTATCTTTA
*
93793289 ATTATCTTTA
1 TTTATCTTTA
93793299 TTTAT-TTATA
1 TTTATCTT-TA
93793309 TTTATCTTT
1 TTTATCTTT
93793318 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:93794658 original size:25 final size:25
Alignment explanation
Indices: 93794624--93794674 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
93794614 TAAGGTGTTC
93794624 AAAAGTAATTTTTGAAATAAATTCG
1 AAAAGTAATTTTTGAAATAAATTCG
93794649 AAAAGTAATTTTTGAAATAAATTCG
1 AAAAGTAATTTTTGAAATAAATTCG
93794674 A
1 A
93794675 GAGCATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.04, G:0.12, T:0.35
Consensus pattern (25 bp):
AAAAGTAATTTTTGAAATAAATTCG
Found at i:93797160 original size:15 final size:15
Alignment explanation
Indices: 93797140--93797170 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
93797130 TTATGTTTTG
93797140 ATCACTAAATTTTAA
1 ATCACTAAATTTTAA
93797155 ATCACTAAATTTTAA
1 ATCACTAAATTTTAA
93797170 A
1 A
93797171 AAAGTTACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (15 bp):
ATCACTAAATTTTAA
Found at i:93800674 original size:30 final size:31
Alignment explanation
Indices: 93800638--93800705 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
93800628 CATTGAAAAA
* * *
93800638 TAAAAAAAAAATTCATTTTAGGTATTGTCAT
1 TAAAAACAAAATTCATTTTAGGCATTGCCAT
* **
93800669 TAAAAACTATTTTCATTTTAGGCATTGCCAT
1 TAAAAACAAAATTCATTTTAGGCATTGCCAT
93800700 TAAAAA
1 TAAAAA
93800706 TCATTTTCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.09, T:0.38
Consensus pattern (31 bp):
TAAAAACAAAATTCATTTTAGGCATTGCCAT
Found at i:93800712 original size:31 final size:31
Alignment explanation
Indices: 93800649--93800718 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
93800639 AAAAAAAAAA
* *
93800649 TTCATTTTAGGTATTGTCATTAAAAACTATT
1 TTCATTTTAGGCATTGCCATTAAAAACTATT
93800680 TTCATTTTAGGCATTGCCATTAAAAA-TCATT
1 TTCATTTTAGGCATTGCCATTAAAAACT-ATT
93800711 TTCATTTT
1 TTCATTTT
93800719 GGTCACCCAC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.49
Consensus pattern (31 bp):
TTCATTTTAGGCATTGCCATTAAAAACTATT
Found at i:93800806 original size:20 final size:19
Alignment explanation
Indices: 93800782--93800820 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
93800772 CTTTTTTTAA
93800782 AAAAAAATTAAAATTAAAATT
1 AAAAAAA-TAAAA-TAAAATT
93800803 AAAAAAATAAAATAAAAT
1 AAAAAAATAAAATAAAAT
93800821 AATTTTCCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 5 0.28
21 7 0.39
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (19 bp):
AAAAAAATAAAATAAAATT
Found at i:93801663 original size:10 final size:10
Alignment explanation
Indices: 93801648--93801678 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
93801638 ATATATGAAA
93801648 TCAATCATAT
1 TCAATCATAT
93801658 TCAATCATAT
1 TCAATCATAT
93801668 TCAATCATAT
1 TCAATCATAT
93801678 T
1 T
93801679 GTCCCTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (10 bp):
TCAATCATAT
Found at i:93803117 original size:24 final size:24
Alignment explanation
Indices: 93803090--93803143 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
93803080 CCGTTAGCGG
93803090 GAAGCTCATA-CAAGCCAATATCGA
1 GAAGCTCA-AGCAAGCCAATATCGA
* *
93803114 GAAGTTCAAGCGAGCCAATATCGA
1 GAAGCTCAAGCAAGCCAATATCGA
93803138 GAAGCT
1 GAAGCT
93803144 TCAGAGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (24 bp):
GAAGCTCAAGCAAGCCAATATCGA
Found at i:93803192 original size:25 final size:25
Alignment explanation
Indices: 93803162--93803230 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
93803152 ATATTAAGTT
* *
93803162 AGGAAGCTCATAAGAGTCAGTTATC
1 AGGAAGCTCATAAGAGCCAATTATC
*
93803187 AGGAAGCGCCA-AAGAGCCAATTATC
1 AGGAAGC-TCATAAGAGCCAATTATC
*
93803212 GGGAAGCTCATAAGAGCCA
1 AGGAAGCTCATAAGAGCCA
93803231 TAAACGGGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.05
25 33 0.89
26 2 0.05
ACGTcount: A:0.38, C:0.20, G:0.26, T:0.16
Consensus pattern (25 bp):
AGGAAGCTCATAAGAGCCAATTATC
Found at i:93806747 original size:344 final size:344
Alignment explanation
Indices: 93806120--93806810 Score: 1292
Period size: 344 Copynumber: 2.0 Consensus size: 344
93806110 AGCTGGAGCA
93806120 AAGAATAGCATCAAGAGCGACTGTTCTCATTCGGTAAAACAGTGTAGTTCGAAGACATGCAACAA
1 AAGAATAGCATCAAGAGCGACTGTTCTCATTCGGTAAAACAGTGTAGTTCGAAGACATGCAACAA
93806185 GAGACATTATTTGTGGCCCATGAGGCATTATCTCATGCAAAAAGGAGAAACCTTACGGCGGGAAT
66 GAGACATTATTTGTGGCCCATGAGGCATTATCTCATGCAAAAAGGAGAAACCTTACGGCGGGAAT
*
93806250 TTTCAAAGATAATGTTAATATTTTGGCCCAAGAGGAGGGATTGGACGAAATTATAATTTTCCCTT
131 TTTCAAAGATAATGTTAATATTTTGGCCCAAGAGGAGGGATTGGACGAAATTATAATTTTCCCTA
*
93806315 ATTCTTATCACTTTTTAATAGGAAAACAGAAATTGACCTTTTTTCTCTCGACTTTTAGTACTTTT
196 ATTCTTATCACTTTTTAATAGGAAAACAGAAATTGACCTTTTTTCTCTAGACTTTTAGTACTTTT
*
93806380 AGTTAGATTTGAATATTTTTAGGAGGAAAAAGTTGAAAATTAAAAGAAAAAATCTGATTTATCAT
261 AATTAGATTTGAATATTTTTAGGAGGAAAAAGTTGAAAATTAAAAGAAAAAATCTGATTTATCAT
93806445 TCTCTTATTGAAAAGGGAT
326 TCTCTTATTGAAAAGGGAT
* * *
93806464 AAGAATAGCATCAAGAGCTACTGTTCTCATTTGGTAAAACAGTGTAGTTCGAAGACATGTAACAA
1 AAGAATAGCATCAAGAGCGACTGTTCTCATTCGGTAAAACAGTGTAGTTCGAAGACATGCAACAA
93806529 GAGACATTATTTGTGGCCCATGAGGCATTATCTCATGCAAAAAGGAGAAACCTTACGGCGGGAAT
66 GAGACATTATTTGTGGCCCATGAGGCATTATCTCATGCAAAAAGGAGAAACCTTACGGCGGGAAT
*
93806594 TTTCAAAGATAATGTTAATATTTTGGCCCAAGAGGAGGGATTGGACGAAATTATAATTTTTCCTA
131 TTTCAAAGATAATGTTAATATTTTGGCCCAAGAGGAGGGATTGGACGAAATTATAATTTTCCCTA
* *
93806659 ATTTTTATCACTTTTTAATAGGAAAATAGAAATTGACCTTTTTTCTCTAGACTTTTAGTACTTTT
196 ATTCTTATCACTTTTTAATAGGAAAACAGAAATTGACCTTTTTTCTCTAGACTTTTAGTACTTTT
*
93806724 AATTAGATTTGAATATTTTTAGGAGGAAAAAGTTGAAAATTAAAAGAAAAAATCTGATTTGTCAT
261 AATTAGATTTGAATATTTTTAGGAGGAAAAAGTTGAAAATTAAAAGAAAAAATCTGATTTATCAT
93806789 TCTCTTATTGAAAAGGGAT
326 TCTCTTATTGAAAAGGGAT
93806808 AAG
1 AAG
93806811 GATGACGTGG
Statistics
Matches: 337, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
344 337 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.33
Consensus pattern (344 bp):
AAGAATAGCATCAAGAGCGACTGTTCTCATTCGGTAAAACAGTGTAGTTCGAAGACATGCAACAA
GAGACATTATTTGTGGCCCATGAGGCATTATCTCATGCAAAAAGGAGAAACCTTACGGCGGGAAT
TTTCAAAGATAATGTTAATATTTTGGCCCAAGAGGAGGGATTGGACGAAATTATAATTTTCCCTA
ATTCTTATCACTTTTTAATAGGAAAACAGAAATTGACCTTTTTTCTCTAGACTTTTAGTACTTTT
AATTAGATTTGAATATTTTTAGGAGGAAAAAGTTGAAAATTAAAAGAAAAAATCTGATTTATCAT
TCTCTTATTGAAAAGGGAT
Found at i:93807062 original size:12 final size:12
Alignment explanation
Indices: 93807045--93807069 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
93807035 AAAATATTAT
93807045 TTTAATTTTTCA
1 TTTAATTTTTCA
93807057 TTTAATTTTTCA
1 TTTAATTTTTCA
93807069 T
1 T
93807070 CTCTTTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTAATTTTTCA
Found at i:93807489 original size:10 final size:9
Alignment explanation
Indices: 93807446--93807497 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
93807436 CATTTAGTTA
93807446 AATTTTTAT
1 AATTTTTAT
* *
93807455 AATTTTAAA
1 AATTTTTAT
*
93807464 AATAATTTAT
1 AAT-TTTTAT
93807474 AATTTTTAT
1 AATTTTTAT
*
93807483 GAATTTTTAA
1 -AATTTTTAT
93807493 AATTT
1 AATTT
93807498 AAAAAATTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
9 20 0.59
10 14 0.41
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (9 bp):
AATTTTTAT
Found at i:93807491 original size:19 final size:19
Alignment explanation
Indices: 93807445--93807497 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
93807435 ACATTTAGTT
93807445 AAATTTTTATAA-TTTTAA
1 AAATTTTTATAATTTTTAA
* *
93807463 AAATAATTTATAATTTTTAT
1 AAAT-TTTTATAATTTTTAA
* *
93807483 GAATTTTTAAAATTT
1 AAATTTTTATAATTT
93807498 AAAAAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 4 0.14
19 16 0.57
20 8 0.29
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
AAATTTTTATAATTTTTAA
Found at i:93809956 original size:16 final size:17
Alignment explanation
Indices: 93809937--93809969 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
93809927 AAAACCCACT
*
93809937 AAACCC-ACTAAGCCTA
1 AAACCCAACAAAGCCTA
93809953 AAACCCAACAAAGCCTA
1 AAACCCAACAAAGCCTA
93809970 CCCACATAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.48, C:0.36, G:0.06, T:0.09
Consensus pattern (17 bp):
AAACCCAACAAAGCCTA
Found at i:93817442 original size:39 final size:39
Alignment explanation
Indices: 93817380--93817597 Score: 328
Period size: 39 Copynumber: 5.6 Consensus size: 39
93817370 ATCGTGATCT
* * * *
93817380 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
93817419 GAAGCCCGAAGGCTAACTAAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
** * *
93817458 GAAGGTCGAAGGCTAATTGAAGCACACAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
93817497 GAAGCTCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
93817536 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACA
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
93817575 GAAGCCCGAAGGCTAATTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
93817598 TCATTAGAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 163 1.00
ACGTcount: A:0.39, C:0.22, G:0.26, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:93819894 original size:26 final size:26
Alignment explanation
Indices: 93819856--93819927 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
93819846 ATAATATGTT
* * * *
93819856 AATAAGAATAATAGTAGTAGTAATAAT
1 AATAAAAATAATAGTAATA-AAATAAA
*
93819883 AA-AAAGATAATAGTAATAAAATAAA
1 AATAAAAATAATAGTAATAAAATAAA
93819908 AATAAAAATAATAGTAATAA
1 AATAAAAATAATAGTAATAA
93819928 TGATAATAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
25 7 0.18
26 29 0.76
27 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.10, T:0.25
Consensus pattern (26 bp):
AATAAAAATAATAGTAATAAAATAAA
Found at i:93820112 original size:15 final size:15
Alignment explanation
Indices: 93820072--93820248 Score: 122
Period size: 15 Copynumber: 12.0 Consensus size: 15
93820062 AAAAGAAAAT
*
93820072 ATAATCATAGTAATA
1 ATAATAATAGTAATA
*
93820087 ATAACT-GTAGTAATA
1 ATAA-TAATAGTAATA
*
93820102 ATAATAATAGTAAGA
1 ATAATAATAGTAATA
*
93820117 ATAATAATAATAAT-
1 ATAATAATAGTAATA
* *
93820131 ATAACAATTA-TAGTA
1 ATAATAA-TAGTAATA
93820146 AT-ATAACTAAGTAATA
1 ATAATAA-T-AGTAATA
93820162 ATAATAAT-G-AA-A
1 ATAATAATAGTAATA
* *
93820174 ATAATACTGGCGGTAATA
1 ATAATAAT---AGTAATA
*
93820192 ATAATAATAATAATA
1 ATAATAATAGTAATA
*
93820207 ATAATAATAATAATA
1 ATAATAATAGTAATA
93820222 ATAAT-ATAGT--TA
1 ATAATAATAGTAATA
*
93820234 AAAATAATAGTAATA
1 ATAATAATAGTAATA
93820249 GTGTTAGAGG
Statistics
Matches: 130, Mismatches: 16, Indels: 32
0.73 0.09 0.18
Matches are distributed among these distances:
12 14 0.11
13 7 0.05
14 19 0.15
15 67 0.52
16 9 0.07
17 6 0.05
18 8 0.06
ACGTcount: A:0.57, C:0.03, G:0.08, T:0.32
Consensus pattern (15 bp):
ATAATAATAGTAATA
Found at i:93820242 original size:3 final size:3
Alignment explanation
Indices: 93819855--93820227 Score: 132
Period size: 3 Copynumber: 126.7 Consensus size: 3
93819845 GATAATATGT
* * * * *
93819855 TAA TAA GAA TAA TAG TAG TAG TAA TAA TAA -AA -AGA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA
* * * * *
93819899 TAA -AA TAA AAA TAA AAA TAA TAG TAA TAA TGA TAA TAA TAA TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * * * *
93819946 TAA AACA TAGA AAA AAA AAA GAA -CA TAA CAA TAA -AA GTAA TGA TAA
1 TAA TA-A TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
* * * *
93819992 TAA CT-A TTA TAA TGA TAA CAA T-A TAA -AA TTAA TGA T-A TAA TAA
1 TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA
* * ** ** * * *
93820035 T-G TAA TAA TAA TAG GCA -AA TAA GCA TAA AAA GAA -AA T-A TAA TCA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
93820079 TAG TAA TAA TAA CT-G TAG TAA TAA TAA TAA TAG TAA GAA TAA TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
93820124 TAA TAA T-A TAA CAA TTA TAG TAA T-A TAA CTAA GTAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA -TAA TAA TAA TAA
* ** ***
93820169 TGAA -AA TAA TAC TGG CGG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
93820214 TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TA
93820228 TAGTTAAAAA
Statistics
Matches: 276, Mismatches: 70, Indels: 48
0.70 0.18 0.12
Matches are distributed among these distances:
2 28 0.10
3 229 0.83
4 19 0.07
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:93820254 original size:21 final size:21
Alignment explanation
Indices: 93820194--93820248 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
93820184 CGGTAATAAT
* *
93820194 AATAATAATAATAATA-ATAAT
1 AATAATAATAAT-ATAGTTAAA
93820215 AATAATAATAATATAGTTAAA
1 AATAATAATAATATAGTTAAA
*
93820236 AATAATAGTAATA
1 AATAATAATAATA
93820249 GTGTTAGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
20 3 0.10
21 27 0.90
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (21 bp):
AATAATAATAATATAGTTAAA
Found at i:93820575 original size:8 final size:7
Alignment explanation
Indices: 93820506--93820578 Score: 69
Period size: 7 Copynumber: 10.3 Consensus size: 7
93820496 GTTAATAAGG
93820506 ATAAT-A
1 ATAATAA
93820512 ATAATAA
1 ATAATAA
93820519 ATAATAA
1 ATAATAA
93820526 ATAATAA
1 ATAATAA
*
93820533 ACAAT-A
1 ATAATAA
* *
93820539 GTACTAA
1 ATAATAA
*
93820546 ATTAATTA
1 A-TAATAA
93820554 ATAATAA
1 ATAATAA
93820561 AGTAATAA
1 A-TAATAA
93820569 ATAAATAA
1 AT-AATAA
93820577 AT
1 AT
93820579 GAAAAAAAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
6 8 0.15
7 27 0.50
8 19 0.35
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (7 bp):
ATAATAA
Found at i:93820678 original size:3 final size:3
Alignment explanation
Indices: 93820672--93820718 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
93820662 AAAATGGTGG
93820672 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
93820719 GTGTTTGAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Done.