Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 312 of 325
Found at i:94790048 original size:7 final size:8
Alignment explanation
Indices: 94790031--94790063 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
94790021 AAGAATAAAT
94790031 AAAATTAA
1 AAAATTAA
94790039 AAAATTAA
1 AAAATTAA
94790047 AAAATTAAA
1 AAAATT-AA
94790056 AAAATTAA
1 AAAATTAA
94790064 GTTTAGAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:94790052 original size:16 final size:17
Alignment explanation
Indices: 94790031--94790063 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
94790021 AAGAATAAAT
94790031 AAAATT-AAAAAATTAA
1 AAAATTAAAAAAATTAA
94790047 AAAATTAAAAAAATTAA
1 AAAATTAAAAAAATTAA
94790064 GTTTAGAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (17 bp):
AAAATTAAAAAAATTAA
Found at i:94790057 original size:9 final size:9
Alignment explanation
Indices: 94790026--94790063 Score: 53
Period size: 8 Copynumber: 4.3 Consensus size: 9
94790016 TAAATAAGAA
94790026 TAAATAAAAT
1 TAAA-AAAAT
94790036 T-AAAAAAT
1 TAAAAAAAT
94790044 T-AAAAAAT
1 TAAAAAAAT
94790052 TAAAAAAAT
1 TAAAAAAAT
94790061 TAA
1 TAA
94790064 GTTTAGAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 14 0.52
9 12 0.44
10 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:94793146 original size:14 final size:16
Alignment explanation
Indices: 94793129--94793162 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
94793119 TCCGAACAAA
94793129 ATTTAA-TTA-TTTTT
1 ATTTAATTTATTTTTT
94793143 ATTTAATTTATTTTTT
1 ATTTAATTTATTTTTT
94793159 ATTT
1 ATTT
94793163 TTTATGATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 3 0.17
16 9 0.50
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTAATTTATTTTTT
Found at i:94802658 original size:2 final size:2
Alignment explanation
Indices: 94802651--94802678 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
94802641 AAACAATCAC
94802651 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
94802679 GGCTCTACGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:94803188 original size:19 final size:20
Alignment explanation
Indices: 94803150--94803190 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
94803140 TTTTATTTTT
94803150 TTATTATGTATAAATTATAA
1 TTATTATGTATAAATTATAA
94803170 TTATT-TGT-TAAATTTATAA
1 TTATTATGTATAAA-TTATAA
94803189 TT
1 TT
94803191 TCTAAGTGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 4 0.20
19 11 0.55
20 5 0.25
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
TTATTATGTATAAATTATAA
Found at i:94803876 original size:25 final size:25
Alignment explanation
Indices: 94803848--94803907 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
94803838 TATCATTTTA
* *
94803848 TATATATATTACATATATAAAT-GAT
1 TATATATATTA-ATATAAAAATAAAT
*
94803873 TATATTTATCTAATATAAAAATAAAT
1 TATATATAT-TAATATAAAAATAAAT
94803899 TA-ATATATT
1 TATATATATT
94803908 TATTTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
24 1 0.03
25 22 0.76
26 6 0.21
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (25 bp):
TATATATATTAATATAAAAATAAAT
Found at i:94804571 original size:20 final size:20
Alignment explanation
Indices: 94804543--94804589 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
94804533 AAAGTTATAT
*
94804543 TTTTTAAAAAA-TAAAAATAA
1 TTTTAAAAAAATTAAAAA-AA
94804563 TTTTAAAAAAATTAAAAAAA
1 TTTTAAAAAAATTAAAAAAA
94804583 -TTTAAAA
1 TTTTAAAA
94804590 TTTATTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 7 0.28
20 12 0.48
21 6 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
TTTTAAAAAAATTAAAAAAA
Found at i:94806080 original size:15 final size:15
Alignment explanation
Indices: 94806037--94806081 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
94806027 TTTTATATAA
*
94806037 TTTTATACATTAAAT
1 TTTTATAAATTAAAT
* *
94806052 TTTGATTTAATTAAAT
1 TTTTA-TAAATTAAAT
94806068 TTTTATAAATTAAA
1 TTTTATAAATTAAA
94806082 CAATTTTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (15 bp):
TTTTATAAATTAAAT
Found at i:94806566 original size:25 final size:25
Alignment explanation
Indices: 94806538--94806600 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
94806528 ATTAACACAA
*
94806538 TTATTGATATAACAT-TATTTTATAT
1 TTATTGATATAACATATA-ATTATAT
94806563 TTATTG-TATAAACATATAATTATAT
1 TTATTGATAT-AACATATAATTATAT
*
94806588 TTATCTAATATAA
1 TTAT-TGATATAA
94806601 AAATAAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
24 3 0.09
25 21 0.66
26 5 0.16
27 3 0.09
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (25 bp):
TTATTGATATAACATATAATTATAT
Found at i:94806606 original size:25 final size:25
Alignment explanation
Indices: 94806557--94806620 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 25
94806547 TAACATTATT
*
94806557 TTATATTTATTGTATAAACATATAA
1 TTATATTTATTATATAAACATATAA
*
94806582 TTATATTTATCTAATATAAAAATA-AA
1 TTATATTTAT-T-ATATAAACATATAA
94806608 TTGATTATTTATT
1 TT-A-TATTTATT
94806621 TCTTTAAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 10 0.30
26 5 0.15
27 11 0.33
28 7 0.21
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (25 bp):
TTATATTTATTATATAAACATATAA
Found at i:94807359 original size:21 final size:23
Alignment explanation
Indices: 94807335--94807390 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
94807325 AAAATATTAT
94807335 TAAATAATT-A-AAAATAGACCA
1 TAAATAATTCAGAAAATAGACCA
*
94807356 TAAATAATGTCATGAAAATAGTCCA
1 TAAATAAT-TCA-GAAAATAGACCA
94807381 TAAAATAATT
1 T-AAATAATT
94807391 TTTCTATGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 8 0.28
22 1 0.03
23 1 0.03
25 12 0.41
26 7 0.24
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.29
Consensus pattern (23 bp):
TAAATAATTCAGAAAATAGACCA
Found at i:94811496 original size:46 final size:46
Alignment explanation
Indices: 94811431--94811847 Score: 516
Period size: 46 Copynumber: 9.0 Consensus size: 46
94811421 TTATCTTTGA
* * * * * *
94811431 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** ***
94811477 CATGTTGCCATGGTATCTTTCAACCATGTTCTTATTCATTTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* * ** *
94811524 CTTGTTGCCATGGTATCTTTCAACCATGGTTTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* **
94811570 CACGCTT-CCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
*
94811616 CATGTTGCCATGGTATCTTTCAACCATGGTCCTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
94811662 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * * * *
94811708 TAGGTTGCCATGGTATCTTTCAATCGTGGTCTTGCACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
94811754 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
94811800 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
94811846 CA
1 CA
94811848 GAGAGCACAC
Statistics
Matches: 335, Mismatches: 31, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
45 6 0.02
46 286 0.85
47 43 0.13
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:94815729 original size:43 final size:42
Alignment explanation
Indices: 94815681--94815837 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
94815671 AGCATATACA
* *
94815681 ATGCCAACGTCCCAGATGTGGTCTTATATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAA-ATCG
* * * *
94815724 ATGCC-ACTGTCCCAGGCAG-GGTCTTACATGAAAT-TAGATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAATCAAAAT-CG
* * * *
94815766 ATGCCAACGTCTCAGACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-AAATCG
*
94815810 ATGCCAACTTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
94815838 CGATAACACA
Statistics
Matches: 89, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
41 2 0.02
42 27 0.30
43 30 0.34
44 28 0.31
45 2 0.02
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAAATCG
Found at i:94815833 original size:86 final size:85
Alignment explanation
Indices: 94815676--94815837 Score: 195
Period size: 85 Copynumber: 1.9 Consensus size: 85
94815666 CGGAAAGCAT
** * * *
94815676 ATACAATGCCAACGTCCCAGATGTGGTCTTATATGTAATCAAACATCGATGCCACTGTCCCAGGC
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAACATCGATGCCACTGTCCCAGAC
94815741 AGGGTCTTACATGAAATTAG
66 AGGGTCTTACATGAAATTAG
* * *
94815761 ATACGATGCCAACGTCTCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAACT-TCCCA
1 ATACAATGCCAACGTCCCAGACATGGTCTTACACGT-AATCA-AACATCGATGCC-ACTGTCCCA
94815824 GAC-GTGGTCTTACA
63 GACAG-GGTCTTACA
94815838 CGATAACACA
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
85 31 0.48
86 29 0.45
87 5 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAACATCGATGCCACTGTCCCAGAC
AGGGTCTTACATGAAATTAG
Found at i:94834317 original size:5 final size:5
Alignment explanation
Indices: 94834307--94834334 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
94834297 AATCAATGCG
94834307 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
94834335 AGTAGTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:94835415 original size:3 final size:3
Alignment explanation
Indices: 94835407--94835440 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
94835397 TCAAATTGAA
94835407 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
94835441 GATGCATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:94843654 original size:7 final size:7
Alignment explanation
Indices: 94843594--94843653 Score: 95
Period size: 7 Copynumber: 8.6 Consensus size: 7
94843584 ATGCATATAA
94843594 TTTTGAC
1 TTTTGAC
94843601 TTTTGAC
1 TTTTGAC
94843608 TTTTGAC
1 TTTTGAC
94843615 TTTTGAC
1 TTTTGAC
94843622 TTTTGAC
1 TTTTGAC
94843629 TTTTGAC
1 TTTTGAC
*
94843636 TTTTGCTC
1 TTTTG-AC
94843644 TTTTGA-
1 TTTTGAC
94843650 TTTT
1 TTTT
94843654 TTCTAAACTA
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
6 4 0.08
7 40 0.80
8 6 0.12
ACGTcount: A:0.12, C:0.13, G:0.13, T:0.62
Consensus pattern (7 bp):
TTTTGAC
Found at i:94843707 original size:15 final size:15
Alignment explanation
Indices: 94843689--94843739 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
94843679 TTTTATCAAG
94843689 TTATATTTTAATCAT
1 TTATATTTTAATCAT
*
94843704 TTAT-TTTTAA-AAT
1 TTATATTTTAATCAT
* *
94843717 ATTACATTTTAATCAC
1 -TTATATTTTAATCAT
94843733 TTATATT
1 TTATATT
94843740 ATTACACTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 6
0.72 0.13 0.15
Matches are distributed among these distances:
13 2 0.07
14 9 0.32
15 16 0.57
16 1 0.04
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATTTTAATCAT
Found at i:94846077 original size:112 final size:111
Alignment explanation
Indices: 94845841--94846114 Score: 389
Period size: 112 Copynumber: 2.5 Consensus size: 111
94845831 ATAAAATTAA
* * * *
94845841 ACCTATATTGTGGGTACGGTAAATTCTAATA-TA-AAAA-TTAATTAATTATTTTCAATATCATT
1 ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTTCAATATAATT
*
94845903 ATTTTCAATAAATATAATTTTTATATGTGAAATATTTATTTTTTTC
66 ATTTTCAATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
94845949 ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTGAATTAATTA-TTTCAAATATAA
1 ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTT-AATTAATTATTTTC-AATATAA
*
94846013 TTATTTT-TATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
64 TTATTTTCAATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
* * * *
94846060 CCCGTACATTGTGGGTATAGTAAATTTTAATATTATAAAA-TCAAATAATTATTTT
1 ACC-TACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTT
94846115 GAATGCCATT
Statistics
Matches: 149, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
108 28 0.19
109 2 0.01
110 12 0.08
111 50 0.34
112 57 0.38
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.48
Consensus pattern (111 bp):
ACCTACATTGTGGGTATGGTAAATTTTAATATTATAAAATTTAATTAATTATTTTCAATATAATT
ATTTTCAATAAATATAATTTTTATATGTCAAATATTTATTTTTTTC
Found at i:94847921 original size:25 final size:27
Alignment explanation
Indices: 94847884--94847936 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
94847874 TCAAACATGC
94847884 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
94847910 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
94847936 A
1 A
94847937 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:94849453 original size:26 final size:26
Alignment explanation
Indices: 94849417--94849552 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
94849407 CATGAAATTC
*
94849417 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
94849443 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCTA
*
94849469 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
*
94849495 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
94849521 TTATCATGAAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCTA
94849547 TTATCA
1 TTATCA
94849553 ATTTGTATCA
Statistics
Matches: 107, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 107 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCTA
Found at i:94850405 original size:47 final size:47
Alignment explanation
Indices: 94850343--94850468 Score: 155
Period size: 47 Copynumber: 2.7 Consensus size: 47
94850333 CTTTACATAA
* * * *
94850343 TGATGCCATAGCCCAGCTATGGTCTTACAC-GTAATCACATATCTCAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGT-AGCACATATCACAC
* * *
94850390 TGATGTCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
* *
94850437 CGATGCCATATCCCAGATATGGTCTTATACAG
1 TGATGCCATATCCCAGATATGGTCTTACACAG
94850469 AAATCACTTG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
47 67 0.97
48 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (47 bp):
TGATGCCATATCCCAGATATGGTCTTACACAGTAGCACATATCACAC
Found at i:94850529 original size:31 final size:31
Alignment explanation
Indices: 94850492--94850693 Score: 287
Period size: 31 Copynumber: 6.5 Consensus size: 31
94850482 CTTGTAGCGA
* *
94850492 AAGCTACCACTATTCACTGATCAGGTAGTTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
** * *
94850523 GTGCTACCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
* * *
94850554 GAGTTACCACTTTTCACTGATCAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
* *
94850585 AAGCTACCACTTTTCACTGATTAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
*
94850616 AAGCTACCACTTTTCATTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
*
94850647 AAACTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
94850678 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
94850694 GTTGTCATTT
Statistics
Matches: 152, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 152 1.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTG
Found at i:94850777 original size:50 final size:50
Alignment explanation
Indices: 94850671--94850897 Score: 357
Period size: 50 Copynumber: 4.5 Consensus size: 50
94850661 CACTGATCAG
* * * *
94850671 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
94850722 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* *
94850772 GTAGCCGAAGTTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
94850822 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
94850872 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
94850898 GTTTCCATGG
Statistics
Matches: 163, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
50 139 0.85
51 24 0.15
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:94853051 original size:27 final size:30
Alignment explanation
Indices: 94853021--94853076 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
94853011 TTAATTAAAA
*
94853021 ATAAAATT-AAAA-AA-ATGTTTATTAATT
1 ATAAAATTGAAAATAACATGCTTATTAATT
*
94853048 ATAAACTTGAAAATAACATGCTTATTAAT
1 ATAAAATTGAAAATAACATGCTTATTAAT
94853077 GAAAAATCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 7 0.29
28 4 0.17
29 2 0.08
30 11 0.46
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (30 bp):
ATAAAATTGAAAATAACATGCTTATTAATT
Found at i:94855133 original size:52 final size:52
Alignment explanation
Indices: 94855055--94855161 Score: 205
Period size: 52 Copynumber: 2.1 Consensus size: 52
94855045 ACCCCTCTAA
94855055 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGG
1 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGG
*
94855107 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTTTACCAATTTTGG
1 TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGG
94855159 TTA
1 TTA
94855162 GCCTATTTGT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.25, C:0.16, G:0.13, T:0.46
Consensus pattern (52 bp):
TTATGTCTTGATTGTTTACATATGCTACAAGTCATCATTCTACCAATTTTGG
Found at i:94857046 original size:2 final size:2
Alignment explanation
Indices: 94857039--94857152 Score: 59
Period size: 2 Copynumber: 62.0 Consensus size: 2
94857029 TATTCTTTTA
*
94857039 AT AT AT AT AT -T AT AC AT AT AT AT AT AT AT -T A- AT AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * *
94857077 AT -T AT GT AT AT TT TT TT AA AT AT -T AT AT AT AT -T TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
94857116 AT -T AT GT AT AT AT TT TT A- AT AT AT -T AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94857153 TATGTACATA
Statistics
Matches: 87, Mismatches: 15, Indels: 20
0.71 0.12 0.16
Matches are distributed among these distances:
1 10 0.11
2 77 0.89
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (2 bp):
AT
Found at i:94857088 original size:9 final size:9
Alignment explanation
Indices: 94857040--94857155 Score: 77
Period size: 9 Copynumber: 13.3 Consensus size: 9
94857030 ATTCTTTTAA
94857040 TATATATAT
1 TATATATAT
*
94857049 TATACATAT
1 TATATATAT
94857058 ATATATATAT
1 -TATATATAT
94857068 TAATATTATAT
1 T-ATA-TATAT
*
94857079 TATGTATAT
1 TATATATAT
94857088 T-T-T-T-T
1 TATATATAT
94857093 TA-A-ATAT
1 TATATATAT
94857100 TATATATAT
1 TATATATAT
*
94857109 TTTATATAT
1 TATATATAT
*
94857118 TATGTATA-
1 TATATATAT
* * *
94857126 TATTTTTAA
1 TATATATAT
94857135 TATAT-TAT
1 TATATATAT
94857143 GTATATATAT
1 -TATATATAT
94857153 TAT
1 TAT
94857156 GTACATACTC
Statistics
Matches: 85, Mismatches: 10, Indels: 24
0.71 0.08 0.20
Matches are distributed among these distances:
5 2 0.02
6 2 0.02
7 4 0.05
8 10 0.12
9 45 0.53
10 16 0.19
11 6 0.07
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (9 bp):
TATATATAT
Found at i:94857128 original size:22 final size:22
Alignment explanation
Indices: 94857039--94857153 Score: 109
Period size: 22 Copynumber: 5.4 Consensus size: 22
94857029 TATTCTTTTA
* * *
94857039 ATATATATATTATACA-TATAT
1 ATATATATTTTATATATTATGT
*
94857060 ATATATATTAATATTATATTATGT
1 ATATATATT-TTA-TATATTATGT
*
94857084 ATAT-T-TTTT-TA-AATAT-T
1 ATATATATTTTATATATTATGT
94857101 ATATATATTTTATATATTATGT
1 ATATATATTTTATATATTATGT
94857123 ATATAT-TTTTAATATATTATGT
1 ATATATATTTT-ATATATTATGT
94857145 ATATATATT
1 ATATATATT
94857154 ATGTACATAC
Statistics
Matches: 77, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
17 5 0.06
18 5 0.06
19 6 0.08
20 2 0.03
21 17 0.22
22 28 0.36
23 6 0.08
24 8 0.10
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.57
Consensus pattern (22 bp):
ATATATATTTTATATATTATGT
Found at i:94857192 original size:23 final size:23
Alignment explanation
Indices: 94857166--94857250 Score: 77
Period size: 23 Copynumber: 3.6 Consensus size: 23
94857156 GTACATACTC
94857166 TTAATATTATTATGTATTTATTT
1 TTAATATTATTATGTATTTATTT
*
94857189 TTAATA-TATATATGTATATATTT
1 TTAATATTAT-TATGTATTTATTT
94857212 ATGTAATATTATTAATAGT-TGTT-TTT
1 -T-TAATATTATT-AT-GTAT-TTATTT
*
94857238 TTAACATTATTAT
1 TTAATATTATTAT
94857251 CATTTCTCAT
Statistics
Matches: 52, Mismatches: 3, Indels: 14
0.75 0.04 0.20
Matches are distributed among these distances:
22 3 0.06
23 20 0.38
24 10 0.19
25 7 0.13
26 9 0.17
27 3 0.06
ACGTcount: A:0.34, C:0.01, G:0.06, T:0.59
Consensus pattern (23 bp):
TTAATATTATTATGTATTTATTT
Found at i:94857300 original size:23 final size:23
Alignment explanation
Indices: 94857260--94857553 Score: 97
Period size: 23 Copynumber: 12.9 Consensus size: 23
94857250 TCATTTCTCA
* *
94857260 TATATATGTGTATCGTATATGTTTT
1 TATATATAT-TAT-GTATATATTTT
*
94857285 TATATATATTATGTATATATCTT
1 TATATATATTATGTATATATTTT
94857308 TAGTAT-TATTA-GT-TATATGTTT
1 TA-TATATATTATGTATATAT-TTT
*
94857330 TTTATACTATTTCATGTATATA-TTT
1 TATATA-TA-TT-ATGTATATATTTT
** *
94857355 TATA-ATATCCT-TAT-TATTAT
1 TATATATATTATGTATATATTTT
* *
94857375 TAT-TAATATT-TGTATGT-GTTT
1 TATAT-ATATTATGTATATATTTT
* *
94857396 TAT-TATA-TG--TATATATCTT
1 TATATATATTATGTATATATTTT
*
94857415 TA-ATATATATATGTATATATTTA
1 TATATATAT-TATGTATATATTTT
*
94857438 TGTA-ATATTAT-TA-ATAGTTGTT
1 TATATATATTATGTATATA-TT-TT
* * *
94857460 TTTTTAACATTAT-TAT-TATTTCT
1 TATAT-ATATTATGTATATATTT-T
*
94857483 AATATATATATACTATGTAAATATTTT
1 --TATATATAT--TATGTATATATTTT
* * *
94857510 AATACTATACTATGTATACATTTT
1 TATA-TATATTATGTATATATTTT
*
94857534 TATATATATTACGTATATAT
1 TATATATATTATGTATATAT
94857554 ATCTTTTTAA
Statistics
Matches: 200, Mismatches: 35, Indels: 70
0.66 0.11 0.23
Matches are distributed among these distances:
18 4 0.02
19 11 0.05
20 15 0.08
21 27 0.14
22 14 0.07
23 49 0.25
24 38 0.19
25 21 0.10
26 9 0.05
27 7 0.04
28 5 0.03
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.55
Consensus pattern (23 bp):
TATATATATTATGTATATATTTT
Found at i:94857476 original size:107 final size:116
Alignment explanation
Indices: 94857169--94857493 Score: 329
Period size: 107 Copynumber: 2.9 Consensus size: 116
94857159 CATACTCTTA
* *
94857169 ATATTATTATGTATTTATTTTTAATATATATATGTATATATTTATGTAATATTATTAATAGTTGT
1 ATATTATTATGTATATATCTTTAATATATATATGTATATATTTATGTAATATTATTAATAGTTGT
* * *
94857234 TTTTTTAACATTATTATCATTTCTCATATATATGTGTATCGTATATGTTTTT
66 TTTTTTAACATTATTATTATTTCTCATATATATATGTATCG-ATATGTGTTT
* * * * *
94857286 ATATATATTATGTATATATCTTTAGTAT-TAT-TAGT-TATATGTT-TTTTATACTATTTCAT-G
1 ATAT-TATTATGTATATATCTTTAATATATATAT-GTATATAT-TTATGTAATATTA-TTAATAG
* * * **
94857346 TATATATTTTATAATATCCTTATTATTAT-T-AT-TA-ATAT-T-T-G-TATGTGTTT
62 T-TGT-TTTTTTAACATTATTATTATT-TCTCATATATATATGTATCGATATGTGTTT
94857396 -TATTA-TATGTATATATCTTTAATATATATATGTATATATTTATGTAATATTATTAATAGTTGT
1 ATATTATTATGTATATATCTTTAATATATATATGTATATATTTATGTAATATTATTAATAGTTGT
*
94857459 TTTTTTAACATTATTATTATTTCTAATATATATAT
66 TTTTTTAACATTATTATTATTTCTCATATATATAT
94857494 ACTATGTAAA
Statistics
Matches: 167, Mismatches: 25, Indels: 39
0.72 0.11 0.17
Matches are distributed among these distances:
106 1 0.01
107 37 0.22
108 17 0.10
109 20 0.12
110 12 0.07
112 1 0.01
113 1 0.01
114 1 0.01
115 3 0.02
116 17 0.10
117 19 0.11
118 37 0.22
119 1 0.01
ACGTcount: A:0.32, C:0.04, G:0.07, T:0.57
Consensus pattern (116 bp):
ATATTATTATGTATATATCTTTAATATATATATGTATATATTTATGTAATATTATTAATAGTTGT
TTTTTTAACATTATTATTATTTCTCATATATATATGTATCGATATGTGTTT
Found at i:94857532 original size:24 final size:23
Alignment explanation
Indices: 94857488--94857550 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
94857478 TTTCTAATAT
* *
94857488 ATATATACTATGTAAATATTTTA
1 ATATATACTATGTATACATTTTA
*
94857511 ATACTATACTATGTATACATTTTT
1 ATA-TATACTATGTATACATTTTA
* *
94857535 ATATATATTACGTATA
1 ATATATACTATGTATA
94857551 TATATCTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
23 14 0.41
24 20 0.59
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.48
Consensus pattern (23 bp):
ATATATACTATGTATACATTTTA
Found at i:94857864 original size:12 final size:12
Alignment explanation
Indices: 94857849--94857961 Score: 58
Period size: 12 Copynumber: 9.3 Consensus size: 12
94857839 TTTTTACCCC
94857849 TATTATATTTAT
1 TATTATATTTAT
94857861 TATTA-A--TAT
1 TATTATATTTAT
*
94857870 TAGTATATATT-T
1 TATTATAT-TTAT
*
94857882 TATTATACGTGTAT
1 TATTATA--TTTAT
94857896 ATATATATACTTT-T
1 -TAT-TATA-TTTAT
*
94857910 TA-TATATAGTAT
1 TATTATAT-TTAT
* *
94857922 TATTTTATATAT
1 TATTATATTTAT
*
94857934 CATTATATTTAT
1 TATTATATTTAT
*
94857946 TATTATACTTAT
1 TATTATATTTAT
94857958 TATT
1 TATT
94857962 TTCACTATTG
Statistics
Matches: 76, Mismatches: 13, Indels: 24
0.67 0.12 0.21
Matches are distributed among these distances:
9 7 0.09
10 2 0.03
11 6 0.08
12 41 0.54
13 8 0.11
14 3 0.04
15 5 0.07
16 4 0.05
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (12 bp):
TATTATATTTAT
Found at i:94857943 original size:17 final size:17
Alignment explanation
Indices: 94857895--94857933 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
94857885 TATACGTGTA
*
94857895 TATATATA-TACT-TTT
1 TATATATAGTATTATTT
94857910 TATATATAGTATTATTT
1 TATATATAGTATTATTT
94857927 TATATAT
1 TATATAT
94857934 CATTATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 3 0.14
17 10 0.48
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
TATATATAGTATTATTT
Found at i:94859803 original size:20 final size:20
Alignment explanation
Indices: 94859780--94859863 Score: 71
Period size: 20 Copynumber: 4.2 Consensus size: 20
94859770 GAATGTCAAC
* *
94859780 AATTTTGTAAGAGATTTAGT
1 AATTCTGTAAGAAATTTAGT
* * *
94859800 AATTCTGTAAAAAATTCAAT
1 AATTCTGTAAGAAATTTAGT
*
94859820 AATTCTATAAGAAATTTAGT
1 AATTCTGTAAGAAATTTAGT
* * *
94859840 ATTTTTTTAAG-AATGTTAGT
1 AATTCTGTAAGAAAT-TTAGT
94859860 AATT
1 AATT
94859864 GCATATGTTA
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
19 3 0.06
20 47 0.94
ACGTcount: A:0.40, C:0.04, G:0.12, T:0.44
Consensus pattern (20 bp):
AATTCTGTAAGAAATTTAGT
Found at i:94860314 original size:14 final size:14
Alignment explanation
Indices: 94860294--94860334 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
94860284 AACCCTAACC
94860294 CTCAAACCCAAAAT
1 CTCAAACCCAAAAT
* *
94860308 CTTAAACCCTAAAT
1 CTCAAACCCAAAAT
*
94860322 CTCAAAACCAAAA
1 CTCAAACCCAAAA
94860335 CCCTAACCTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.51, C:0.32, G:0.00, T:0.17
Consensus pattern (14 bp):
CTCAAACCCAAAAT
Found at i:94860799 original size:18 final size:18
Alignment explanation
Indices: 94860766--94860800 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94860756 GAGAATTCTT
*
94860766 TTTTATTAAATTAGAAAC
1 TTTTATTAAATAAGAAAC
*
94860784 TTTTATTATATAAGAAA
1 TTTTATTAAATAAGAAA
94860801 ATACCGAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.46
Consensus pattern (18 bp):
TTTTATTAAATAAGAAAC
Found at i:94865906 original size:46 final size:46
Alignment explanation
Indices: 94865839--94866008 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
94865829 TGTAACCCGC
* *
94865839 CCATAAGTGAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
*
94865885 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G--T-GTTCGCAT
* * * ****
94865935 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
94865978 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
94866009 TTTGGATGCT
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 57 0.56
47 26 0.25
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
Found at i:94866033 original size:46 final size:44
Alignment explanation
Indices: 94865844--94866033 Score: 118
Period size: 46 Copynumber: 4.1 Consensus size: 44
94865834 CCCGCCCATA
* * * * * *
94865844 AGTGAACTCAGACTCAACTCAATGAGCTCGGGTGTTCGCATCCAT-A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATG--C-CAACCATCT
*
94865890 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
94865937 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGC-CAACCATCT
*
94865983 AGTGAACTCGGACTCAACTCAACGAGTTTGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
94866029 AGTGA
1 AGTGA
94866034 CATGTCACTT
Statistics
Matches: 113, Mismatches: 18, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
43 1 0.01
44 11 0.10
45 1 0.01
46 65 0.58
47 29 0.26
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:94866606 original size:20 final size:18
Alignment explanation
Indices: 94866572--94866608 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
94866562 GCAACTCATA
94866572 ATTTCAACTATTTTACAC
1 ATTTCAACTATTTTACAC
94866590 ATTTACAACTCATTTTACA
1 ATTT-CAACT-ATTTTACA
94866609 ACTTAGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (18 bp):
ATTTCAACTATTTTACAC
Found at i:94869859 original size:86 final size:86
Alignment explanation
Indices: 94869714--94870058 Score: 618
Period size: 86 Copynumber: 4.0 Consensus size: 86
94869704 AATACGCCTA
* * *
94869714 AAAAAAATGACCATCCATGTGTGGCAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCACGTGTGGTAGGAACAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
94869779 ATTTCAATGCAACATTCTTCT
66 ATTTCAATGCAACATTCTTCT
94869800 AAAAAAATGACCATCCACGTGTGGTAGGAACAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCACGTGTGGTAGGAACAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
*
94869865 ATTTCAATGCACCATTCTTCT
66 ATTTCAATGCAACATTCTTCT
*
94869886 AAAAAAATGACCATCCACGTGTGGTAGGAGCAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCACGTGTGGTAGGAACAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
*
94869951 ATTTCAATGCACCATTCTTCT
66 ATTTCAATGCAACATTCTTCT
* *
94869972 AAAAAAATGACCATCCATGTGTGGTAGGAACAATCCACCATGGTTGCCCTCTATGTTTTGAGGTA
1 AAAAAAATGACCATCCACGTGTGGTAGGAACAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
94870037 ATTTCAATGCAACATTCTTCT
66 ATTTCAATGCAACATTCTTCT
94870058 A
1 A
94870059 TTTTCTCATC
Statistics
Matches: 250, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
86 250 1.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.31
Consensus pattern (86 bp):
AAAAAAATGACCATCCACGTGTGGTAGGAACAATCCACCATGGTTGTCCTCTATGTTTTGAGGTA
ATTTCAATGCAACATTCTTCT
Found at i:94870642 original size:30 final size:32
Alignment explanation
Indices: 94870584--94870643 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
94870574 AGGTATAATG
*
94870584 ACTTAAAAAGAGAATTAAATGCACAAAATATA
1 ACTTAAAAAGAGAATTAAATGAACAAAATATA
*
94870616 ACTTAAAAAGAGAA-TGAA-GAACAAAATA
1 ACTTAAAAAGAGAATTAAATGAACAAAATA
94870644 AATAGTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 9 0.35
31 3 0.12
32 14 0.54
ACGTcount: A:0.62, C:0.08, G:0.12, T:0.18
Consensus pattern (32 bp):
ACTTAAAAAGAGAATTAAATGAACAAAATATA
Found at i:94873592 original size:2 final size:2
Alignment explanation
Indices: 94873585--94873638 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
94873575 CTAATTATCA
*
94873585 AG AG AG AG AG AG AG AG AG AG AG AG AG GG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
94873627 AG AG AG AG AG AG
1 AG AG AG AG AG AG
94873639 CTGATCTAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
AG
Found at i:94875776 original size:27 final size:27
Alignment explanation
Indices: 94875728--94875813 Score: 97
Period size: 27 Copynumber: 3.2 Consensus size: 27
94875718 GCGAGGCTGC
* *
94875728 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
94875755 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
94875781 CAGATATATGTGGCAAAGCAACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
94875808 CAGATA
1 CAGATA
94875814 ATCACTAGAA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
26 8 0.15
27 43 0.83
28 1 0.02
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:94875838 original size:43 final size:43
Alignment explanation
Indices: 94875777--94875858 Score: 146
Period size: 43 Copynumber: 1.9 Consensus size: 43
94875767 CAGAGCCACC
94875777 AGAACAGATATATGTGGCAAAGCAACCAGATCAGATAATCACT
1 AGAACAGATATATGTGGCAAAGCAACCAGATCAGATAATCACT
* *
94875820 AGAACAGATATATGTGGCAGAGCCACCAGATCAGATAAT
1 AGAACAGATATATGTGGCAAAGCAACCAGATCAGATAAT
94875859 TGTGGCATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.43, C:0.18, G:0.21, T:0.18
Consensus pattern (43 bp):
AGAACAGATATATGTGGCAAAGCAACCAGATCAGATAATCACT
Found at i:94875844 original size:70 final size:70
Alignment explanation
Indices: 94875745--94875875 Score: 194
Period size: 70 Copynumber: 1.9 Consensus size: 70
94875735 TGTGACGAAG
94875745 TCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGAT-ATATGTGGCAAAGCAACCAGATC
1 TCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATAAT-TGTGGCAAAGCAACCAGATC
94875809 AGATAA
65 AGATAA
* * * *
94875815 TCACTAGA-ACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 TCACCAGATACAGATAT-TGTGGCAGAGCCACCAGAACAGATAATTGTGGCAAAGCAACCAG
94875876 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
69 8 0.15
70 45 0.82
71 2 0.04
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (70 bp):
TCACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATAATTGTGGCAAAGCAACCAGATCA
GATAA
Found at i:94875854 original size:27 final size:27
Alignment explanation
Indices: 94875824--94875875 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
94875814 ATCACTAGAA
94875824 CAGAT-ATATGTGGCAGAGCCACCAGAT
1 CAGATAAT-TGTGGCAGAGCCACCAGAT
*
94875851 CAGATAATTGTGGCATAGCCACCAG
1 CAGATAATTGTGGCAGAGCCACCAG
94875876 GACGCTTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATAATTGTGGCAGAGCCACCAGAT
Found at i:94877525 original size:26 final size:26
Alignment explanation
Indices: 94877494--94877601 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
94877484 TGAAATGCCC
* *
94877494 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAATATTTACCTAACCCATT
94877520 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
*
94877546 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAATATTTACCTAACCCATT
94877572 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAACCCATT
94877598 ATCA
1 ATCA
94877602 ATTTGTACCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.22, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAATATTTACCTAACCCATT
Found at i:94880311 original size:56 final size:55
Alignment explanation
Indices: 94880245--94880398 Score: 184
Period size: 65 Copynumber: 2.6 Consensus size: 55
94880235 TTTTTAAGGG
*
94880245 AAAATTAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAATTGTAA
1 AAAATCAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAATT-TAA
*
94880301 AAAATCAATTAAATTAGGGTTTAGGGTTTTTATGGTTTATTAATTAAATTAATTATTAATTTAA
1 AAAATCAATTAAATTAGGGTTTAGGG---TTA------ATTAATTAAATTAACTATTAATTTAA
94880365 AAGAATCAATTAAATTAGGGTTTAGGGTT-ATTAA
1 AA-AATCAATTAAATTAGGGTTTAGGGTTAATTAA
94880399 GGTTAATTAA
Statistics
Matches: 86, Mismatches: 2, Indels: 21
0.79 0.02 0.19
Matches are distributed among these distances:
55 5 0.06
56 25 0.29
59 3 0.03
62 2 0.02
64 5 0.06
65 46 0.53
ACGTcount: A:0.42, C:0.02, G:0.14, T:0.42
Consensus pattern (55 bp):
AAAATCAATTAAATTAGGGTTTAGGGTTAATTAATTAAATTAACTATTAATTTAA
Found at i:94880346 original size:65 final size:64
Alignment explanation
Indices: 94880264--94880439 Score: 280
Period size: 65 Copynumber: 2.7 Consensus size: 64
94880254 TAAATTAGGG
*
94880264 TTTAGGGTTAATTAATTAAATTAACTATTAATTGTAAAAAATCAATTAAATTAGGGTTTAGGGTT
1 TTTAAGGTTAATTAATTAAATTAACTATTAATT-TAAAAAATCAATTAAATTAGGGTTTAGGGTT
* * *
94880329 TTTATGGTTTATTAATTAAATTAATTATTAATTTAAAAGAATCAATTAAATTAGGGTTTAGGGTT
1 TTTAAGGTTAATTAATTAAATTAACTATTAATTTAAAA-AATCAATTAAATTAGGGTTTAGGGTT
*
94880394 ATTAAGGTTAATTAATTAAATTAACTATTAATTTTAAAAAATCAAT
1 TTTAAGGTTAATTAATTAAATTAACTATTAA-TTTAAAAAATCAAT
94880440 ATATAAATTT
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
64 5 0.05
65 90 0.88
66 7 0.07
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.43
Consensus pattern (64 bp):
TTTAAGGTTAATTAATTAAATTAACTATTAATTTAAAAAATCAATTAAATTAGGGTTTAGGGTT
Found at i:94884007 original size:21 final size:20
Alignment explanation
Indices: 94883982--94884033 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
94883972 TGGTTCAGCT
*
94883982 TCCGGCGAGGGTTGTGGTTGC
1 TCCGGC-AGGGTTGTGGTTCC
**
94884003 TCCGGCAGAAATTGTGGTTCC
1 TCCGGCAG-GGTTGTGGTTCC
94884024 TCCGGCAGGG
1 TCCGGCAGGG
94884034 GATCTGGTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.12, C:0.23, G:0.40, T:0.25
Consensus pattern (20 bp):
TCCGGCAGGGTTGTGGTTCC
Found at i:94884418 original size:30 final size:30
Alignment explanation
Indices: 94884379--94884446 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 30
94884369 GTTGAAGTGT
*
94884379 TGGGCCCGGTGACTGTGTGGGCGCTGTTGA
1 TGGGCCCGGTGACTATGTGGGCGCTGTTGA
*
94884409 TGGGTCCGGTGACTATGTGGGCGCTGTTGA
1 TGGGCCCGGTGACTATGTGGGCGCTGTTGA
94884439 TGGGCCCG
1 TGGGCCCG
94884447 CATCGTCATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.07, C:0.21, G:0.46, T:0.26
Consensus pattern (30 bp):
TGGGCCCGGTGACTATGTGGGCGCTGTTGA
Found at i:94885910 original size:24 final size:24
Alignment explanation
Indices: 94885883--94885933 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
94885873 ACTGTTATAA
*
94885883 AAAATT-ATAAAATAAAAAATAATT
1 AAAATTGAAAAAATAAAAAA-AATT
*
94885907 AAAATTGAAAAAATGAAAAAAATT
1 AAAATTGAAAAAATAAAAAAAATT
94885931 AAA
1 AAA
94885934 TAGTATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.54
25 11 0.46
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (24 bp):
AAAATTGAAAAAATAAAAAAAATT
Found at i:94886142 original size:21 final size:22
Alignment explanation
Indices: 94886096--94886143 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 22
94886086 AATAGAGCTT
*
94886096 TTTTG-CAAAAATTAAAGAGAG
1 TTTTGACAAAAATTAAAGAGAA
* *
94886117 CTTTGACAAAAATT-GAGAGAA
1 TTTTGACAAAAATTAAAGAGAA
94886138 TTTTGA
1 TTTTGA
94886144 GAGAATTTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (22 bp):
TTTTGACAAAAATTAAAGAGAA
Found at i:94886145 original size:11 final size:11
Alignment explanation
Indices: 94886129--94886168 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
94886119 TTGACAAAAA
94886129 TTGAGAGAATT
1 TTGAGAGAATT
94886140 TTGAGAGAATT
1 TTGAGAGAATT
* *
94886151 TAGAAAGAATT
1 TTGAGAGAATT
*
94886162 GTGAGAG
1 TTGAGAG
94886169 GACTATTGTG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (11 bp):
TTGAGAGAATT
Found at i:94888014 original size:27 final size:25
Alignment explanation
Indices: 94887976--94888038 Score: 81
Period size: 25 Copynumber: 2.4 Consensus size: 25
94887966 TATATCAAAT
* *
94887976 AATAAAGAATATATAGAAATGTTTTAA
1 AATAAATAATATAT-GAAA-GGTTTAA
*
94888003 AATAAATAATATGTGAAAGGTTTAA
1 AATAAATAATATATGAAAGGTTTAA
94888028 AATAAATAATA
1 AATAAATAATA
94888039 AAATGAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 17 0.52
26 4 0.12
27 12 0.36
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (25 bp):
AATAAATAATATATGAAAGGTTTAA
Found at i:94891330 original size:23 final size:23
Alignment explanation
Indices: 94891304--94891349 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
94891294 ATCATGGTTG
94891304 AATTTGGATGATAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
94891327 AATTTGGATGATAATCATCTCTT
1 AATTTGGATGATAATCATCTCTT
94891350 CTAGATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (23 bp):
AATTTGGATGATAATCATCTCTT
Found at i:94891644 original size:18 final size:19
Alignment explanation
Indices: 94891621--94891663 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
94891611 CAGGCAAGCC
94891621 TTTTG-AAGTAGTATTGTA
1 TTTTGTAAGTAGTATTGTA
94891639 TTTTGATTAAGTAGTATTGTA
1 TTTTG--TAAGTAGTATTGTA
94891660 TTTT
1 TTTT
94891664 TGGATAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.23
21 17 0.77
ACGTcount: A:0.26, C:0.00, G:0.19, T:0.56
Consensus pattern (19 bp):
TTTTGTAAGTAGTATTGTA
Found at i:94893318 original size:30 final size:30
Alignment explanation
Indices: 94893259--94893318 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
94893249 AGTTATGTTG
* *
94893259 GTGAAAAGTTAATTGCTTAATAGATTAGCT
1 GTGAAAAGTTAATTACTTAATAGACTAGCT
*
94893289 GTGAAAAGCTT-ATTACTTAATAGCCTAGCT
1 GTGAAAAG-TTAATTACTTAATAGACTAGCT
94893319 TTCAAGAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (30 bp):
GTGAAAAGTTAATTACTTAATAGACTAGCT
Found at i:94894001 original size:46 final size:44
Alignment explanation
Indices: 94893909--94894001 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
94893899 TTACAACATT
94893909 ATTCCATTCAACCAAACACAAGAGTACTATTACAGTTCTATTCC
1 ATTCCATTCAACCAAACACAAGAGTACTATTACAGTTCTATTCC
* * *
94893953 ATTCCATTCAACCAAACA-ATTGAATTACTAATTACAGTTTTATTCC
1 ATTCCATTCAACCAAACACA-AG-AGTACT-ATTACAGTTCTATTCC
94893999 ATT
1 ATT
94894002 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
43 1 0.02
44 19 0.44
45 5 0.12
46 18 0.42
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (44 bp):
ATTCCATTCAACCAAACACAAGAGTACTATTACAGTTCTATTCC
Found at i:94894004 original size:16 final size:16
Alignment explanation
Indices: 94893983--94894054 Score: 99
Period size: 16 Copynumber: 4.5 Consensus size: 16
94893973 TGAATTACTA
*
94893983 ATTACAGTTTTATTCC
1 ATTACAGTTCTATTCC
*
94893999 ATTACAGCTCTATTCC
1 ATTACAGTTCTATTCC
* *
94894015 ATTACAGCTCTATTCA
1 ATTACAGTTCTATTCC
*
94894031 ATTACAGTCCTATTCC
1 ATTACAGTTCTATTCC
94894047 ATTACAGT
1 ATTACAGT
94894055 GAACCAAACG
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.28, C:0.25, G:0.07, T:0.40
Consensus pattern (16 bp):
ATTACAGTTCTATTCC
Found at i:94896608 original size:29 final size:29
Alignment explanation
Indices: 94896575--94896630 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
94896565 TCGAAACAAG
*
94896575 TTAGA-AAATCGTGGCACAAATTTATTAAT
1 TTAGATAAAT-GTGCCACAAATTTATTAAT
*
94896604 TTAGATAAGTGTGCCACAAATTTATTA
1 TTAGATAAATGTGCCACAAATTTATTA
94896631 CATATATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (29 bp):
TTAGATAAATGTGCCACAAATTTATTAAT
Found at i:94897441 original size:15 final size:16
Alignment explanation
Indices: 94897411--94897449 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
94897401 TAGTAAAAAT
94897411 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
94897428 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
94897443 ATAATTT
1 ATAATTT
94897450 TTGAATGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:94902893 original size:159 final size:159
Alignment explanation
Indices: 94902587--94902901 Score: 384
Period size: 159 Copynumber: 2.0 Consensus size: 159
94902577 GGTATAAACT
* * *
94902587 CCAACAAATTCAATTAATGACTCTAATCAACCCTCCAAGAAATAATCCTTATAAAATTGAAGGAT
1 CCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAAAAATAATCCTTAGAAAATTGAAGGAT
* * * * ** *
94902652 TAAAAATGAATTCTCACGACTCATTGAAAAAAATTGAGAAGAAAATTGTTTCTAAAAATCATAAG
66 AAAAAATGAATTCCCACGACTCATTGAAAAAAATTGAGAAAAAAACTACTTCTAAAAATCACAAG
* *
94902717 AAAGCAATTTTGCACAAAGAAACTAAATC
131 AAAGAAATCTTGCACAAAGAAACTAAATC
* * * *
94902746 CCAACAAACTCAATTACTGACTCTAATCAACCCTCCAAAAAATAATCCTTGGCAAATTGAAGGGT
1 CCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAAAAATAATCCTTAGAAAATTGAAGGAT
* * * *
94902811 AAAAAATGAATTCCCATGA-TCCTTTAAGGAAAATCT-AGAAAAAAACTACTTCTAAAAATCACA
66 AAAAAATGAATTCCCACGACTCATTGAA-AAAAAT-TGAGAAAAAAACTACTTCTAAAAATCACA
* *
94902874 AGGAAA-AAATCTTGTACAAAGAATCTAA
129 A-GAAAGAAATCTTGCACAAAGAAACTAA
94902902 CTCTTATAGT
Statistics
Matches: 131, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
158 6 0.05
159 120 0.92
160 5 0.04
ACGTcount: A:0.47, C:0.18, G:0.10, T:0.24
Consensus pattern (159 bp):
CCAACAAACTCAATTAATGACTCTAATCAACCCTCCAAAAAATAATCCTTAGAAAATTGAAGGAT
AAAAAATGAATTCCCACGACTCATTGAAAAAAATTGAGAAAAAAACTACTTCTAAAAATCACAAG
AAAGAAATCTTGCACAAAGAAACTAAATC
Found at i:94905102 original size:103 final size:103
Alignment explanation
Indices: 94904923--94905111 Score: 245
Period size: 103 Copynumber: 1.8 Consensus size: 103
94904913 ACTAACCCTA
* * * * *
94904923 AGTCATAGTTAGATTGATATAGACATTGTTTCCAATGTAAAAGGACGCGGGTTCAAGTGCACTGC
1 AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACACAGGTTCAAGTACACTAC
*
94904988 AGCGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
66 AACGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
* * * * *
94905026 AGTCATAGTTCGATTCATAT-GTACATTGTTTCCAATGTGAAAGTACATAGGTTCAAGTATACTA
1 AGTCATAGTTAGATTCATATAG-ACATTGTTTCCAATGTAAAAGGACACAGGTTCAAGTACACTA
* *
94905090 TAATGCATTATCCTCCTATTTA
65 CAACGCATTATCCTCCTATTTA
94905112 TGAGTTCAGA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
102 1 0.01
103 71 0.99
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (103 bp):
AGTCATAGTTAGATTCATATAGACATTGTTTCCAATGTAAAAGGACACAGGTTCAAGTACACTAC
AACGCATTATCCTCCTATTTAAAAATACAAGTTTATTG
Found at i:94907684 original size:12 final size:12
Alignment explanation
Indices: 94907669--94907721 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
94907659 TTTAGGCTCA
*
94907669 GGTTCTGGATAT
1 GGTTCAGGATAT
*
94907681 GGTTCAGGGTAT
1 GGTTCAGGATAT
*
94907693 GGTTCCGGA-AGT
1 GGTTCAGGATA-T
*
94907705 GGCTCAGGATAT
1 GGTTCAGGATAT
94907717 GGTTC
1 GGTTC
94907722 GGGAGCTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.17, C:0.13, G:0.38, T:0.32
Consensus pattern (12 bp):
GGTTCAGGATAT
Found at i:94907848 original size:18 final size:18
Alignment explanation
Indices: 94907800--94907849 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
94907790 CTCCGGATCT
94907800 GGTAGTGGGTCTGGATATG
1 GGTA-TGGGTCTGGATATG
*
94907819 GGTCA-GGATCTGGATCA-G
1 GGT-ATGGGTCTGGAT-ATG
94907837 GGTATGGGTCTGG
1 GGTATGGGTCTGG
94907850 TGGTGGGATA
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
17 1 0.04
18 20 0.77
19 4 0.15
20 1 0.04
ACGTcount: A:0.16, C:0.10, G:0.46, T:0.28
Consensus pattern (18 bp):
GGTATGGGTCTGGATATG
Found at i:94907872 original size:3 final size:3
Alignment explanation
Indices: 94907866--94907906 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
94907856 GATAGGAGGA
* * *
94907866 GGT GGT GGT GGT GGT GGT GGT AGA GGA GGT GGT GGT GGT GG
1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG
94907907 CAATGGGGGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.07, C:0.00, G:0.66, T:0.27
Consensus pattern (3 bp):
GGT
Found at i:94907882 original size:27 final size:27
Alignment explanation
Indices: 94907847--94907906 Score: 95
Period size: 27 Copynumber: 2.2 Consensus size: 27
94907837 GGTATGGGTC
94907847 TGGTGGTGG-GATAGGAGGAGGTGGTGG
1 TGGTGGTGGTGATA-GAGGAGGTGGTGG
*
94907874 TGGTGGTGGTGGTAGAGGAGGTGGTGG
1 TGGTGGTGGTGATAGAGGAGGTGGTGG
94907901 TGGTGG
1 TGGTGG
94907907 CAATGGGGGA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 28 0.90
28 3 0.10
ACGTcount: A:0.12, C:0.00, G:0.63, T:0.25
Consensus pattern (27 bp):
TGGTGGTGGTGATAGAGGAGGTGGTGG
Found at i:94907918 original size:27 final size:27
Alignment explanation
Indices: 94907860--94907918 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
94907850 TGGTGGGATA
*** *
94907860 GGAGGAGGTGGTGGTGGTGGTGGTGGT
1 GGAGGAGGTGGTGGTGGTGGCAATGGG
*
94907887 AGAGGAGGTGGTGGTGGTGGCAATGGG
1 GGAGGAGGTGGTGGTGGTGGCAATGGG
94907914 GGAGG
1 GGAGG
94907919 GTCAGGATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.14, C:0.02, G:0.64, T:0.20
Consensus pattern (27 bp):
GGAGGAGGTGGTGGTGGTGGCAATGGG
Found at i:94907998 original size:24 final size:24
Alignment explanation
Indices: 94907971--94908017 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
94907961 ATACGGAAGT
*
94907971 GGTGGTGGTAGAGGAGGAGGAGGA
1 GGTGGTGGCAGAGGAGGAGGAGGA
* *
94907995 GGTGGTGGCAGTGGAGGTGGAGG
1 GGTGGTGGCAGAGGAGGAGGAGG
94908018 TGGAGGAGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.02, G:0.64, T:0.15
Consensus pattern (24 bp):
GGTGGTGGCAGAGGAGGAGGAGGA
Found at i:94908028 original size:33 final size:33
Alignment explanation
Indices: 94907972--94908035 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
94907962 TACGGAAGTG
*
94907972 GTGGTGGTAGAGGAGGAGGAGGAGGTGGTGGCA
1 GTGGAGGTAGAGGAGGAGGAGGAGGTGGTGGCA
* *
94908005 GTGGAGGTGGAGGTGGAGGAGGAGGTGGTGG
1 GTGGAGGTAGAGGAGGAGGAGGAGGTGGTGG
94908036 AGGCAATGGT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.19, C:0.02, G:0.64, T:0.16
Consensus pattern (33 bp):
GTGGAGGTAGAGGAGGAGGAGGAGGTGGTGGCA
Found at i:94908037 original size:12 final size:12
Alignment explanation
Indices: 94907983--94908038 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
94907973 TGGTGGTAGA
*
94907983 GGAGGAGGAGGA
1 GGAGGAGGAGGT
* *
94907995 GGTGGTGGCA-GT
1 GGAGGAGG-AGGT
*
94908007 GGAGGTGGAGGT
1 GGAGGAGGAGGT
94908019 GGAGGAGGAGGT
1 GGAGGAGGAGGT
*
94908031 GGTGGAGG
1 GGAGGAGG
94908039 CAATGGTTCA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
11 1 0.03
12 34 0.94
13 1 0.03
ACGTcount: A:0.20, C:0.02, G:0.66, T:0.12
Consensus pattern (12 bp):
GGAGGAGGAGGT
Found at i:94908065 original size:18 final size:18
Alignment explanation
Indices: 94908042--94908092 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
94908032 GTGGAGGCAA
94908042 TGGTTCAGGTTATGGAAG
1 TGGTTCAGGTTATGGAAG
*
94908060 TGGTTCAGGATATGGAAG
1 TGGTTCAGGTTATGGAAG
*
94908078 TGGGTCAGGTTATGG
1 TGGTTCAGGTTATGG
94908093 TAGTAGTGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.22, C:0.06, G:0.41, T:0.31
Consensus pattern (18 bp):
TGGTTCAGGTTATGGAAG
Found at i:94910017 original size:24 final size:22
Alignment explanation
Indices: 94909969--94910022 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 22
94909959 GCATATATGT
94909969 ATAATAAT-GATGAAAATAATA
1 ATAATAATAGATGAAAATAATA
94909990 ATAATAATAG-TGAAAATAAATA
1 ATAATAATAGATGAAAAT-AATA
94910012 GGATAATAATA
1 --ATAATAATA
94910023 AATATAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 15 0.52
22 5 0.17
24 9 0.31
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.28
Consensus pattern (22 bp):
ATAATAATAGATGAAAATAATA
Found at i:94910109 original size:3 final size:3
Alignment explanation
Indices: 94910094--94910184 Score: 50
Period size: 3 Copynumber: 31.3 Consensus size: 3
94910084 TGCTAATATG
* * ** *
94910094 AAT AAT GAT AAT AAT ACT AAT AAT AAT AAT AA- AAT ACG AAG AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* *
94910139 -AT ATAT AAT -AT AAT AAT AAT ATT AA- AAT -AC AAT AATT AA- AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
94910181 AAT A
1 AAT A
94910185 TTATATATGA
Statistics
Matches: 67, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
2 10 0.15
3 51 0.76
4 6 0.09
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:94910247 original size:3 final size:3
Alignment explanation
Indices: 94910229--94910293 Score: 103
Period size: 3 Copynumber: 21.3 Consensus size: 3
94910219 AAACGTATAC
* *
94910229 TAA TATA TAG TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
94910275 TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA T
94910294 CATATTAAAT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:94910889 original size:8 final size:8
Alignment explanation
Indices: 94910876--94910905 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
94910866 AAAATCTGAT
94910876 TTTTTTTA
1 TTTTTTTA
94910884 TTTTTTTA
1 TTTTTTTA
94910892 TTTTTATTA
1 TTTTT-TTA
94910901 TTTTT
1 TTTTT
94910906 ATATATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTTTA
Found at i:94910915 original size:9 final size:9
Alignment explanation
Indices: 94910874--94910914 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
94910864 TAAAAATCTG
*
94910874 ATTTTTTTT
1 ATTTTTATT
94910883 ATTTTT-TT
1 ATTTTTATT
94910891 ATTTTTATT
1 ATTTTTATT
94910900 ATTTTTATAT
1 ATTTTTAT-T
94910910 ATTTT
1 ATTTT
94910915 AGTATGTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.27
9 16 0.53
10 6 0.20
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
ATTTTTATT
Found at i:94910915 original size:18 final size:18
Alignment explanation
Indices: 94910876--94910929 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
94910866 AAAATCTGAT
* *
94910876 TTTTTTTATTTTTTTAT-
1 TTTTATTATTTTTATATA
94910893 TTTTATTATTTTTATATA
1 TTTTATTATTTTTATATA
* * *
94910911 TTTTAGTATGTATATATA
1 TTTTATTATTTTTATATA
94910929 T
1 T
94910930 GGGAAAATAG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
17 15 0.48
18 16 0.52
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (18 bp):
TTTTATTATTTTTATATA
Found at i:94911298 original size:22 final size:22
Alignment explanation
Indices: 94911265--94911335 Score: 90
Period size: 22 Copynumber: 3.2 Consensus size: 22
94911255 TACAAGGACT
94911265 GTGGCGGTATGGGG-TTGTTGCA
1 GTGG-GGTATGGGGCTTGTTGCA
*
94911287 GTAGGGGTATGGGGCTTGTTGTA
1 GT-GGGGTATGGGGCTTGTTGCA
* *
94911310 GTGGGGTATGGGGCTGGTTGTA
1 GTGGGGTATGGGGCTTGTTGCA
94911332 GTGG
1 GTGG
94911336 TTGCGGCACA
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
22 34 0.76
23 11 0.24
ACGTcount: A:0.10, C:0.06, G:0.52, T:0.32
Consensus pattern (22 bp):
GTGGGGTATGGGGCTTGTTGCA
Found at i:94911480 original size:33 final size:34
Alignment explanation
Indices: 94911435--94911502 Score: 95
Period size: 33 Copynumber: 2.0 Consensus size: 34
94911425 TTCGGGTTTA
94911435 GGGGTTAGTGGGTTTAGTGGGTCTT-GGT-TAGTT
1 GGGGTTAGTGGG-TTAGTGGGTCTTGGGTCTAGTT
* *
94911468 GGGGTTATTGGGTTAGTGGGTTTTGGGTCTAGTT
1 GGGGTTAGTGGGTTAGTGGGTCTTGGGTCTAGTT
94911502 G
1 G
94911503 TTGGGCTCCG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
32 11 0.35
33 14 0.45
34 6 0.19
ACGTcount: A:0.09, C:0.03, G:0.46, T:0.43
Consensus pattern (34 bp):
GGGGTTAGTGGGTTAGTGGGTCTTGGGTCTAGTT
Found at i:94911488 original size:16 final size:16
Alignment explanation
Indices: 94911432--94911500 Score: 56
Period size: 16 Copynumber: 4.3 Consensus size: 16
94911422 GGCTTCGGGT
*
94911432 TTAG-GGGTTAGTGGG
1 TTAGTGGGTTATTGGG
*
94911447 TTTAGTGGG-TCTT-GG
1 -TTAGTGGGTTATTGGG
94911462 TTAGTTGGGGTTATTGGG
1 TTAG-T-GGGTTATTGGG
94911480 TTAGTGGGTT-TTGGG
1 TTAGTGGGTTATTGGG
94911495 TCTAGT
1 T-TAGT
94911501 TGTTGGGCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
14 4 0.09
15 9 0.20
16 18 0.41
17 7 0.16
18 6 0.14
ACGTcount: A:0.10, C:0.03, G:0.43, T:0.43
Consensus pattern (16 bp):
TTAGTGGGTTATTGGG
Found at i:94912117 original size:13 final size:13
Alignment explanation
Indices: 94912099--94912123 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
94912089 TTTGAAACAT
94912099 AGAAATTAAAAGC
1 AGAAATTAAAAGC
94912112 AGAAATTAAAAG
1 AGAAATTAAAAG
94912124 GCTCAACTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.16, T:0.16
Consensus pattern (13 bp):
AGAAATTAAAAGC
Found at i:94912455 original size:121 final size:123
Alignment explanation
Indices: 94912239--94912554 Score: 530
Period size: 121 Copynumber: 2.6 Consensus size: 123
94912229 AAAATCAAAG
*
94912239 AAACAGAAATTGAAAATAGAAATTAAAAAGACTCAACTCACCTCTTGCAATATGAACTGACTTTT
1 AAACAGGAATTGAAAATAGAAATTAAAAAGAC-CAACTCACCTCTTGCAATATGAACTGACTTTT
* *
94912304 GAAAATACCTTAGTGTGCCATAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT-AAA
65 GAAAATACCTTAGCGTGCCACAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGAAA
* *
94912362 AAACAGGAATTGAAAATAGAAATTAAAAAGA-CAACTCACTTCTCGCAATATGAACTGACTTTTG
1 AAACAGGAATTGAAAATAGAAATTAAAAAGACCAACTCACCTCTTGCAATATGAACTGACTTTTG
*
94912426 AAAATACCTTAGCGTGCCGCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGAAA
66 AAAATACCTTAGCGTGCCACAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGAAA
*
94912484 AAA-AGGAATTGAAAATAGAAATTAAAAAGACTCAACTCACCTCTTGCAATATGAATTGACTTTT
1 AAACAGGAATTGAAAATAGAAATTAAAAAGAC-CAACTCACCTCTTGCAATATGAACTGACTTTT
94912548 GAAAATA
65 GAAAATA
94912555 GAATTTGAAA
Statistics
Matches: 181, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
121 109 0.60
122 6 0.03
123 66 0.36
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.25
Consensus pattern (123 bp):
AAACAGGAATTGAAAATAGAAATTAAAAAGACCAACTCACCTCTTGCAATATGAACTGACTTTTG
AAAATACCTTAGCGTGCCACAAGGCTCAACTCACCTCTCGCAATATGAGTTGATGAAA
Found at i:94912719 original size:71 final size:72
Alignment explanation
Indices: 94912570--94912880 Score: 346
Period size: 71 Copynumber: 4.3 Consensus size: 72
94912560 TGAAAATACC
* * * * *
94912570 TCTCGCAATATGAGTCGATTTTAGATTTAATAGGAATTGAAATTACCTCAGCGTGCCCCGAGGTT
1 TCTCGCAATATGAGTTGATTTTTGA-TAAATA-GAATTGAAATTACCTCAACGTGCCCCGAGGCT
94912635 CAACTCACT
64 CAACTCACT
* * **
94912644 TCTCGCAATATGAGTTGATTTTTGA-AACATA-AATTGAAATTAACTCAACGTGTCTTGAGGCTC
1 TCTCGCAATATGAGTTGATTTTTGATAA-ATAGAATTGAAATTACCTCAACGTGCCCCGAGGCTC
*
94912707 AACTCACC
65 AACTCACT
* * *
94912715 TCTCGCAATATGAGTTGATTTTTGGATTTAATAGGAATTGAAATTACCTCAGCGTGCCCCGAGGT
1 TCTCGCAATATGAGTTGATTTTT-GA-TAAATA-GAATTGAAATTACCTCAACGTGCCCCGAGGC
94912780 TCAACTCACT
63 TCAACTCACT
* **
94912790 TCTCGCGATATGAGTTGATTTTTGA-AACATA-AATTGAAATTACCTCAACGT--CTTGAGGCTC
1 TCTCGCAATATGAGTTGATTTTTGATAA-ATAGAATTGAAATTACCTCAACGTGCCCCGAGGCTC
*
94912851 AACTCATT
65 AACTCACT
* *
94912859 TCTCGTAATATGAGCTGATTTT
1 TCTCGCAATATGAGTTGATTTT
94912881 CTTGGAAAAC
Statistics
Matches: 202, Mismatches: 28, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
69 33 0.16
71 75 0.37
72 4 0.02
73 9 0.04
74 26 0.13
75 55 0.27
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.34
Consensus pattern (72 bp):
TCTCGCAATATGAGTTGATTTTTGATAAATAGAATTGAAATTACCTCAACGTGCCCCGAGGCTCA
ACTCACT
Found at i:94913023 original size:71 final size:71
Alignment explanation
Indices: 94912907--94913038 Score: 192
Period size: 71 Copynumber: 1.9 Consensus size: 71
94912897 TAAAAAGCAA
* * *
94912907 AAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTTTG
94912972 AAACAT
66 AAACAT
* ** * *
94912978 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
1 AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATT
94913039 CTCTTGGAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 53 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTTTG
AAACAT
Found at i:94913075 original size:160 final size:160
Alignment explanation
Indices: 94912750--94913451 Score: 1264
Period size: 160 Copynumber: 4.4 Consensus size: 160
94912740 ATTTAATAGG
* * * * * *
94912750 AATTGAAATTACCTCAGCGTGCCCCGAGGTTCAACTCACTTCTCGCGATATGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
** *
94912815 AACATAAATTGAAATTACCTCAAC--GTCTTGAGGCTCAACTCATTTCTCGTAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
94912878 TTTCTTGGAAAACATGAATTAAAAAGCAAA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
94912908 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
94912973 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
*
94913038 TCTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
94913068 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
94913133 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
94913198 TTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
*
94913228 AATTAAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
1 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
*
94913293 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGATCTGAT
66 AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
94913358 TTTCTTGGAAAACATGAATTAAAAAGCAGA
131 TTTCTTGGAAAACATGAATTAAAAAGCAGA
*
94913388 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG
1 AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTG
94913452 GAAAAAACAG
Statistics
Matches: 526, Mismatches: 16, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
158 83 0.16
160 443 0.84
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (160 bp):
AATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTGA
AACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGAT
TTTCTTGGAAAACATGAATTAAAAAGCAGA
Found at i:94913183 original size:71 final size:71
Alignment explanation
Indices: 94913067--94913200 Score: 196
Period size: 71 Copynumber: 1.9 Consensus size: 71
94913057 TAAAAAGCAG
* * *
94913067 AAATTGAAAATACCTCAGCGTACCCTGAGGCTCAACTCACTTCTCGCAATACGAGTTGATTTTTG
1 AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTTTG
94913132 AAACAT
66 AAACAT
* ** * *
94913138 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTT
94913201 CTTGGAAAAC
Statistics
Matches: 55, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 55 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (71 bp):
AAATTGAAAATACCTCAACGTACCCTGAGGCTCAACTCACCTCTCGCAATACGAGCTGATTTTTG
AAACAT
Found at i:94925913 original size:24 final size:22
Alignment explanation
Indices: 94925865--94925918 Score: 67
Period size: 21 Copynumber: 2.4 Consensus size: 22
94925855 GCATATATGT
94925865 ATAATAAT-GATGAAAATAATA
1 ATAATAATAGATGAAAATAATA
94925886 ATAATAATAG-TGAAAATAAATA
1 ATAATAATAGATGAAAAT-AATA
94925908 GGATAATAATA
1 --ATAATAATA
94925919 AATATAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 15 0.52
22 5 0.17
24 9 0.31
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.28
Consensus pattern (22 bp):
ATAATAATAGATGAAAATAATA
Found at i:94926005 original size:3 final size:3
Alignment explanation
Indices: 94925990--94926080 Score: 50
Period size: 3 Copynumber: 31.3 Consensus size: 3
94925980 TGCTAATATG
* * ** *
94925990 AAT AAT GAT AAT AAT ACT AAT AAT AAT AAT AA- AAT ACG AAG AAGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T
* *
94926035 -AT ATAT AAT -AT AAT AAT AAT ATT AA- AAT -AC AAT AATT AA- AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
94926077 AAT A
1 AAT A
94926081 TTATATATGA
Statistics
Matches: 67, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
2 10 0.15
3 51 0.76
4 6 0.09
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:94926143 original size:3 final size:3
Alignment explanation
Indices: 94926125--94926175 Score: 75
Period size: 3 Copynumber: 16.7 Consensus size: 3
94926115 AAACGTATAC
* *
94926125 TAA TATA TAG TAA TAA TAA TAA CAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
94926171 TAA TA
1 TAA TA
94926176 TCATAAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:94927032 original size:23 final size:23
Alignment explanation
Indices: 94926985--94927056 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
94926975 TACGAGGACT
* *
94926985 GTGGCGGTATGGGG-TTGTTGCA
1 GTGGGGGTATGGGGCTTGTTGTA
94927007 GTGGGGGTATGGGGCTTGTTGTA
1 GTGGGGGTATGGGGCTTGTTGTA
*
94927030 GTGGGGGTATGGGGCTGGTTGTA
1 GTGGGGGTATGGGGCTTGTTGTA
94927053 GTGG
1 GTGG
94927057 TTGCGGCACA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
22 13 0.28
23 33 0.72
ACGTcount: A:0.08, C:0.06, G:0.54, T:0.32
Consensus pattern (23 bp):
GTGGGGGTATGGGGCTTGTTGTA
Found at i:94927205 original size:17 final size:16
Alignment explanation
Indices: 94927179--94927221 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
94927169 TAGTGGTCTT
94927179 GGTTAGTTGGGGTTATTG
1 GGTTAGTT-GGGTT-TTG
94927197 GGTTA-TTGGGTTTTG
1 GGTTAGTTGGGTTTTG
94927212 GGTCTAGTTG
1 GGT-TAGTTG
94927222 TTGGGCTTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 6 0.26
16 7 0.30
17 5 0.22
18 5 0.22
ACGTcount: A:0.09, C:0.02, G:0.42, T:0.47
Consensus pattern (16 bp):
GGTTAGTTGGGTTTTG
Found at i:94931586 original size:15 final size:15
Alignment explanation
Indices: 94931568--94931613 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
94931558 GGGATAGGAA
*
94931568 GTGGTGGAGGAGGTG
1 GTGGTGGAGGCGGTG
*
94931583 GTGGTGGCA-GCGGAG
1 GTGGTGG-AGGCGGTG
94931598 GTGGTGGAGGCGGTG
1 GTGGTGGAGGCGGTG
94931613 G
1 G
94931614 CAACGGAAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 1 0.04
15 24 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.07, G:0.65, T:0.17
Consensus pattern (15 bp):
GTGGTGGAGGCGGTG
Found at i:94931587 original size:30 final size:30
Alignment explanation
Indices: 94931551--94931613 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
94931541 GGCATGGGTC
* *
94931551 TGGTGGTGGGATAGGAAGTGGTGGAGGAGG
1 TGGTGGTGGCAGAGGAAGTGGTGGAGGAGG
* * *
94931581 TGGTGGTGGCAGCGGAGGTGGTGGAGGCGG
1 TGGTGGTGGCAGAGGAAGTGGTGGAGGAGG
94931611 TGG
1 TGG
94931614 CAACGGAAGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.14, C:0.05, G:0.62, T:0.19
Consensus pattern (30 bp):
TGGTGGTGGCAGAGGAAGTGGTGGAGGAGG
Found at i:94931666 original size:18 final size:18
Alignment explanation
Indices: 94931618--94931679 Score: 79
Period size: 18 Copynumber: 3.4 Consensus size: 18
94931608 CGGTGGCAAC
*
94931618 GGAAGTGGGTCGGGATAT
1 GGAAGTGGGTCTGGATAT
*** *
94931636 GGGTCTGGATCTGGATAT
1 GGAAGTGGGTCTGGATAT
94931654 GGAAGTGGGTCTGGATAT
1 GGAAGTGGGTCTGGATAT
94931672 GGAAGTGG
1 GGAAGTGG
94931680 AGGTGGTAGA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.21, C:0.06, G:0.47, T:0.26
Consensus pattern (18 bp):
GGAAGTGGGTCTGGATAT
Found at i:94931714 original size:15 final size:15
Alignment explanation
Indices: 94931696--94931745 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
94931686 TAGAGGTAGA
94931696 GGTGGAGGAGGAGGT
1 GGTGGAGGAGGAGGT
*
94931711 GGTGGCA-GTGGAGGT
1 GGTGG-AGGAGGAGGT
* *
94931726 GGTGGTGGCGGAGGT
1 GGTGGAGGAGGAGGT
94931741 GGTGG
1 GGTGG
94931746 TCATGGAGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 29 0.97
16 1 0.03
ACGTcount: A:0.12, C:0.04, G:0.66, T:0.18
Consensus pattern (15 bp):
GGTGGAGGAGGAGGT
Found at i:94931756 original size:18 final size:17
Alignment explanation
Indices: 94931702--94931757 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 17
94931692 TAGAGGTGGA
94931702 GGAGGAGGTGGTGGCA-
1 GGAGGAGGTGGTGGCAT
*
94931718 -GTGGAGGTGGTGG--T
1 GGAGGAGGTGGTGGCAT
*
94931732 GGCGGAGGTGGTGGTCAT
1 GGAGGAGGTGGTGG-CAT
94931750 GGAGGAGG
1 GGAGGAGG
94931758 GTCAGGATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 24 0.75
18 8 0.25
ACGTcount: A:0.14, C:0.05, G:0.62, T:0.18
Consensus pattern (17 bp):
GGAGGAGGTGGTGGCAT
Found at i:94933223 original size:26 final size:26
Alignment explanation
Indices: 94933186--94933321 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
94933176 TGATACAAAT
* *
94933186 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
94933212 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
** *
94933238 TGATAATATGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
94933264 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
94933290 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
94933316 TGATAA
1 TGATAA
94933322 GAATATCATG
Statistics
Matches: 102, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:94935376 original size:136 final size:137
Alignment explanation
Indices: 94935091--94935364 Score: 514
Period size: 136 Copynumber: 2.0 Consensus size: 137
94935081 GAGTAGTCTC
*
94935091 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCTTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
94935156 TGTTATCTGAGTAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
94935221 ACTGTTA
131 ACTGTTA
94935228 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
94935292 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
94935357 ACTGTTA
131 ACTGTTA
94935364 C
1 C
94935365 TTGAATGGGC
Statistics
Matches: 134, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
136 114 0.85
137 20 0.15
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:94936847 original size:47 final size:47
Alignment explanation
Indices: 94936783--94936893 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
94936773 GACATTGAGT
*
94936783 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
94936830 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
94936877 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
94936894 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:94944105 original size:47 final size:47
Alignment explanation
Indices: 94944041--94944151 Score: 154
Period size: 47 Copynumber: 2.4 Consensus size: 47
94944031 GACATTGAGT
*
94944041 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTGTTC
* * *
94944088 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTGTTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
94944135 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
94944152 CTTATCCCGG
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
47 52 0.93
48 4 0.07
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTGTTC
Found at i:94946377 original size:22 final size:20
Alignment explanation
Indices: 94946340--94946408 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 20
94946330 GATTAATATG
94946340 TAAATTATTGAAATTAATTTA
1 TAAATTATT-AAATTAATTTA
94946361 TAATACTTATTAAATTAATTTAA
1 TAA-A-TTATTAAATTAATTT-A
94946384 TAAATTATGTAAATT-ATATTA
1 TAAATTAT-TAAATTAAT-TTA
94946405 TAAA
1 TAAA
94946409 CTAAAAGTAT
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
21 14 0.33
22 20 0.47
23 9 0.21
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.46
Consensus pattern (20 bp):
TAAATTATTAAATTAATTTA
Found at i:94948027 original size:3 final size:3
Alignment explanation
Indices: 94948019--94948229 Score: 191
Period size: 3 Copynumber: 71.3 Consensus size: 3
94948009 TTAATTAATT
* * * * *
94948019 TTA TTA TTA TTT TTA ATA TCA TTTA TTA TCA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * *
94948065 TTA CTA TTA TTA ATA TTA TTA GTT- TTA CCA TTA CTA TTTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA -TTA TTA TTA
* * * **
94948111 TTA TTG TTA CTA CTA TT- TTA TT- TTA TT- TT- TTA CCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
94948155 TT- TTA TTA CTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
94948202 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
94948230 CATTTCTTAT
Statistics
Matches: 168, Mismatches: 32, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
2 12 0.07
3 150 0.89
4 6 0.04
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:94948269 original size:13 final size:13
Alignment explanation
Indices: 94948237--94948275 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
94948227 TATCATTTCT
*
94948237 TATTTTTTATTAAA
1 TATTTTTTATT-TA
94948251 TATTTTTTATTTA
1 TATTTTTTATTTA
*
94948264 TTTTTTTTATTT
1 TATTTTTTATTT
94948276 GTTTAAACTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TATTTTTTATTTA
Found at i:94951811 original size:12 final size:12
Alignment explanation
Indices: 94951784--94951830 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
94951774 GTTAGGAAAG
94951784 GGAGGTGGT-G-
1 GGAGGTGGTGGC
94951794 GG-GGTGGTGGC
1 GGAGGTGGTGGC
*
94951805 GGAGGTGGAGGC
1 GGAGGTGGTGGC
94951817 GGAGGTGGTGGC
1 GGAGGTGGTGGC
94951829 GG
1 GG
94951831 CTCTGGATCA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 6 0.19
10 3 0.09
11 2 0.06
12 21 0.66
ACGTcount: A:0.09, C:0.06, G:0.70, T:0.15
Consensus pattern (12 bp):
GGAGGTGGTGGC
Found at i:94951982 original size:18 final size:18
Alignment explanation
Indices: 94951932--94951994 Score: 72
Period size: 18 Copynumber: 3.5 Consensus size: 18
94951922 GGCAGTGGCA
* *
94951932 ATGGAGGTGGGTCAGGAT
1 ATGGAAGTGGGTCTGGAT
*** *
94951950 ATGGGTCTGGATCTGGAT
1 ATGGAAGTGGGTCTGGAT
94951968 ATGGAAGTGGGTCTGGAT
1 ATGGAAGTGGGTCTGGAT
94951986 ATGGAAGTG
1 ATGGAAGTG
94951995 AAGGCGGTAG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.22, C:0.06, G:0.44, T:0.27
Consensus pattern (18 bp):
ATGGAAGTGGGTCTGGAT
Found at i:94952162 original size:21 final size:21
Alignment explanation
Indices: 94952138--94952184 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
94952128 GAGTGGAAAT
94952138 GGAGGTGGTAG-AGGTGGAGGA
1 GGAGGTGGTAGCA-GTGGAGGA
* *
94952159 GGAGGTGGTGGCAGTGGAGGT
1 GGAGGTGGTAGCAGTGGAGGA
94952180 GGAGG
1 GGAGG
94952185 AGGCGGAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 22 0.96
22 1 0.04
ACGTcount: A:0.19, C:0.02, G:0.64, T:0.15
Consensus pattern (21 bp):
GGAGGTGGTAGCAGTGGAGGA
Found at i:94955721 original size:26 final size:26
Alignment explanation
Indices: 94955692--94955752 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
94955682 CTCTTCATGC
94955692 ATTTAAAATTTAGATTTCATACTTTT
1 ATTTAAAATTTAGATTTCATACTTTT
94955718 ATTTAAAATTTAGATTTCATACTTTT
1 ATTTAAAATTTAGATTTCATACTTTT
*
94955744 ATTTTAAAT
1 ATTTAAAAT
94955753 AATTTAGTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.36, C:0.07, G:0.03, T:0.54
Consensus pattern (26 bp):
ATTTAAAATTTAGATTTCATACTTTT
Found at i:94955998 original size:15 final size:14
Alignment explanation
Indices: 94955961--94956004 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
94955951 TAATACATTA
94955961 AAATATTTAAATATCT
1 AAATATTT-AATAT-T
94955977 AAATATTTAATATT
1 AAATATTTAATATT
*
94955991 AAATTATTTTATAT
1 AAA-TATTTAATAT
94956005 ATATTAATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 4 0.15
15 14 0.54
16 8 0.31
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
AAATATTTAATATT
Found at i:94956591 original size:36 final size:36
Alignment explanation
Indices: 94956544--94956613 Score: 140
Period size: 36 Copynumber: 1.9 Consensus size: 36
94956534 CCGCGTAAAA
94956544 TCTGTGTTCTTATTTTTCTTTCTTATTACTTTGCTG
1 TCTGTGTTCTTATTTTTCTTTCTTATTACTTTGCTG
94956580 TCTGTGTTCTTATTTTTCTTTCTTATTACTTTGC
1 TCTGTGTTCTTATTTTTCTTTCTTATTACTTTGC
94956614 GGTCATTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.09, C:0.17, G:0.10, T:0.64
Consensus pattern (36 bp):
TCTGTGTTCTTATTTTTCTTTCTTATTACTTTGCTG
Found at i:94958675 original size:18 final size:18
Alignment explanation
Indices: 94958654--94958690 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
94958644 ATATGGTTTC
94958654 GGGTCAGGATATGGAAGT
1 GGGTCAGGATATGGAAGT
**
94958672 GGGTTTGGATATGGAAGT
1 GGGTCAGGATATGGAAGT
94958690 G
1 G
94958691 AAGGCGATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.03, G:0.46, T:0.27
Consensus pattern (18 bp):
GGGTCAGGATATGGAAGT
Found at i:94958715 original size:6 final size:6
Alignment explanation
Indices: 94958706--94958745 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
94958696 GATAGTGCTA
* * *
94958706 GTGGTG GTGGAG GAGGAG GTGGTG GTGGAG GTGGAG GTGG
1 GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGGAG GTGG
94958746 GGGCAGTGGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.12, C:0.00, G:0.68, T:0.20
Consensus pattern (6 bp):
GTGGAG
Found at i:94958727 original size:18 final size:18
Alignment explanation
Indices: 94958706--94958745 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
94958696 GATAGTGCTA
94958706 GTGGTGGTGGAGGAGGAG
1 GTGGTGGTGGAGGAGGAG
*
94958724 GTGGTGGTGGAGGTGGAG
1 GTGGTGGTGGAGGAGGAG
94958742 GTGG
1 GTGG
94958746 GGGCAGTGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.12, C:0.00, G:0.68, T:0.20
Consensus pattern (18 bp):
GTGGTGGTGGAGGAGGAG
Found at i:94958868 original size:15 final size:15
Alignment explanation
Indices: 94958835--94958868 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
94958825 GGAGGAGGAG
* *
94958835 GAGGTGGTGGCGGTG
1 GAGGTGGTGGCAGTA
94958850 GAGGTGGTGGCAGTA
1 GAGGTGGTGGCAGTA
94958865 GAGG
1 GAGG
94958869 AGGGTCCGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.62, T:0.18
Consensus pattern (15 bp):
GAGGTGGTGGCAGTA
Found at i:94958871 original size:18 final size:15
Alignment explanation
Indices: 94958831--94958860 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
94958821 TGGAGGAGGA
94958831 GGAGGAGGTGGTGGC
1 GGAGGAGGTGGTGGC
*
94958846 GGTGGAGGTGGTGGC
1 GGAGGAGGTGGTGGC
94958861 AGTAGAGGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.67, T:0.17
Consensus pattern (15 bp):
GGAGGAGGTGGTGGC
Found at i:94958881 original size:111 final size:110
Alignment explanation
Indices: 94958654--94958961 Score: 423
Period size: 111 Copynumber: 2.9 Consensus size: 110
94958644 ATATGGTTTC
* * * * * * *
94958654 GGGTCAGGATATGGAAGTGGGTTTGGATATGGAAGTGAAGGCGATAGTGC--TAGTGGTGGT---
1 GGGTCCGGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTGTAGTGGTGGTGGA
* *
94958714 GGAGGAGGAGGTGGTGGTGGAGGTGGAGGTGGGGGCAGTGGAAGA
66 GGAGGAGGAGGAGGTGGTGGAGGTGGAGGTGGGGGCAGTAGAAGA
94958759 GGGTCCGGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTAGTAGTGGTGGTGG
1 GGGTCCGGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCT-GTAGTGGTGGTGG
* * *
94958824 AGGAGGAGGAGGAGGTGGTGGCGGTGGAGGTGGTGGCAGTAGAGGA
65 AGGAGGAGGAGGAGGTGGTGGAGGTGGAGGTGGGGGCAGTAGAAGA
94958870 GGGTCCGGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTG--GTGGTGGTGGA
1 GGGTCCGGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTGTAGTGGTGGTGGA
* * *
94958933 GGAGGAGGAGGAGGAGGAGGAGGAGGAGG
66 GGAGGAGGAGGAGGTGGTGGAGGTGGAGG
94958962 AGGAGGAGGA
Statistics
Matches: 181, Mismatches: 16, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
105 43 0.24
108 46 0.25
110 1 0.01
111 91 0.50
ACGTcount: A:0.22, C:0.05, G:0.54, T:0.19
Consensus pattern (110 bp):
GGGTCCGGATACGGAAGTGGATCTGGATATGGAAGTGGAGGTGGTAGTGCTGTAGTGGTGGTGGA
GGAGGAGGAGGAGGTGGTGGAGGTGGAGGTGGGGGCAGTAGAAGA
Done.