Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 315 of 325
Found at i:95504852 original size:21 final size:20
Alignment explanation
Indices: 95504809--95504860 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
95504799 AAAATATTTA
95504809 TTTTAAATTTATTATTATAT
1 TTTTAAATTTATTATTATAT
95504829 TTTTAAATTT-TT-TTATGTAT
1 TTTTAAATTTATTATTA--TAT
*
95504849 TTTTAGATTTAT
1 TTTTAAATTTAT
95504861 ATATATGCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 3 0.11
19 2 0.07
20 22 0.79
21 1 0.04
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTAAATTTATTATTATAT
Found at i:95514222 original size:117 final size:117
Alignment explanation
Indices: 95514091--95514334 Score: 443
Period size: 117 Copynumber: 2.1 Consensus size: 117
95514081 GGTGGAAATA
*
95514091 ATGCAGGTGATCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
1 ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
*
95514156 GAAGAGAGTGGTAGTGGTGGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
66 GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
*
95514208 ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCACAGTTGGGGTGGCAAG
1 ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
* *
95514273 GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTGGAAACT
66 GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
95514325 ATGCAGGTGG
1 ATGCAGGTGG
95514335 ATATGGCCAC
Statistics
Matches: 122, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 122 1.00
ACGTcount: A:0.26, C:0.09, G:0.42, T:0.23
Consensus pattern (117 bp):
ATGCAGGTGGTCGTGGTAGAGGACGTGGACGTGGGTGTAGTAGAAGTCAAAGTTGGGGTGGCAAG
GAAGAGAGTGGTAGTGGTAGTAATGATGGAGCTTGGAATTCCAGTAGAAACG
Found at i:95515169 original size:27 final size:27
Alignment explanation
Indices: 95515107--95515182 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 27
95515097 CTCTTTATTT
* *
95515107 ATTTTAAAAATTTTAAAAAACCTTTAA
1 ATTTTAAAAATATTAAAAAACCTTAAA
*
95515134 ATTTAAAAAATATTAAAAAA-C-TAAA
1 ATTTTAAAAATATTAAAAAACCTTAAA
95515159 TATATTTAAAAAATATTATAAAAA
1 -AT-TTT-AAAAATATTA-AAAAA
95515183 TGCATAAATG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 3 0.07
26 3 0.07
27 20 0.49
28 10 0.24
29 5 0.12
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
ATTTTAAAAATATTAAAAAACCTTAAA
Found at i:95515817 original size:10 final size:10
Alignment explanation
Indices: 95515816--95515857 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
95515806 TATATTATTA
95515816 TATTAAAT--
1 TATTAAATAT
95515824 TATTTAAATAT
1 TAT-TAAATAT
95515835 TATTTAAATAT
1 TA-TTAAATAT
95515846 TATTAAATAT
1 TATTAAATAT
95515856 TA
1 TA
95515858 AATATTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 3 0.10
9 5 0.17
10 10 0.33
11 11 0.37
12 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TATTAAATAT
Found at i:95515824 original size:37 final size:36
Alignment explanation
Indices: 95515783--95515860 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 36
95515773 GCATATATAA
* *
95515783 AAATTAGATTAATTAATATTATATATATTATT-ATATT
1 AAATTA-ATTAAATAATATT-TAAATATTATTAATATT
* *
95515820 AAATTATTTAAATATTATTTAAATATTATTAAATATT
1 AAATTAATTAAATAATATTTAAATATTATT-AATATT
95515857 AAAT
1 AAAT
95515861 ATTATTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
35 10 0.29
36 10 0.29
37 15 0.43
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (36 bp):
AAATTAATTAAATAATATTTAAATATTATTAATATT
Found at i:95515867 original size:10 final size:11
Alignment explanation
Indices: 95515822--95515857 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
95515812 ATTATATTAA
95515822 ATTATTTAAAT
1 ATTATTTAAAT
95515833 ATTATTTAAAT
1 ATTATTTAAAT
95515844 ATTA-TTAAAT
1 ATTATTTAAAT
95515854 ATTA
1 ATTA
95515858 AATATTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATTATTTAAAT
Found at i:95515885 original size:25 final size:27
Alignment explanation
Indices: 95515857--95515906 Score: 70
Period size: 25 Copynumber: 1.9 Consensus size: 27
95515847 ATTAAATATT
95515857 AAATA-TTATTATATT-T-AATTTTAAA
1 AAATATTTA-TATATTATAAATTTTAAA
95515882 AAATATTTATATATTATAAATTTTA
1 AAATATTTATATATTATAAATTTTA
95515907 TAAATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 11 0.50
26 4 0.18
27 7 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (27 bp):
AAATATTTATATATTATAAATTTTAAA
Found at i:95515902 original size:17 final size:17
Alignment explanation
Indices: 95515835--95515912 Score: 63
Period size: 17 Copynumber: 4.6 Consensus size: 17
95515825 ATTTAAATAT
95515835 TATTTAAATATTATTAAA
1 TATTTAAATATTA-TAAA
*
95515853 TA-TTAAATATTAT-TA
1 TATTTAAATATTATAAA
* *
95515868 TATTT-AATTTTAAAAAA
1 TATTTAAATATT-ATAAA
*
95515885 TATTTATATATTATAAA
1 TATTTAAATATTATAAA
*
95515902 TTTTATAAATA
1 TATT-TAAATA
95515913 ATTTGTATTA
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
15 8 0.17
16 4 0.09
17 23 0.50
18 11 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTTAAATATTATAAA
Found at i:95515932 original size:22 final size:23
Alignment explanation
Indices: 95515907--95515962 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
95515897 ATAAATTTTA
* *
95515907 TAAATAATTTGTATT-AATTACT
1 TAAATAAATTATATTAAATTACT
*
95515929 TAAA-AAATTATATTAAATTATT
1 TAAATAAATTATATTAAATTACT
95515951 TAAATATAATTA
1 TAAATA-AATTA
95515963 ATTTAACTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 8 0.29
22 14 0.50
23 1 0.04
24 5 0.18
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (23 bp):
TAAATAAATTATATTAAATTACT
Found at i:95519527 original size:48 final size:48
Alignment explanation
Indices: 95519455--95519549 Score: 154
Period size: 48 Copynumber: 2.0 Consensus size: 48
95519445 GAGAATTATG
* *
95519455 AAGACATCTTATTAAATCATAATAAACATATAAAACAAAATATATTGT
1 AAGACATCTTATTAAATCAAAATAAACAGATAAAACAAAATATATTGT
* *
95519503 AAGACATCTTATTAAATCAAAATAAATAGATAAAACAGAATATATTG
1 AAGACATCTTATTAAATCAAAATAAACAGATAAAACAAAATATATTG
95519550 CCTCGACTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.55, C:0.09, G:0.06, T:0.29
Consensus pattern (48 bp):
AAGACATCTTATTAAATCAAAATAAACAGATAAAACAAAATATATTGT
Found at i:95524176 original size:6 final size:6
Alignment explanation
Indices: 95524156--95524201 Score: 74
Period size: 6 Copynumber: 7.7 Consensus size: 6
95524146 ATATTTTGAT
**
95524156 AAATTA AAAACA AAATTA AAATTA AAATTA AAATTA AAATTA AAAT
1 AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAATTA AAAT
95524202 ACTAATAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (6 bp):
AAATTA
Found at i:95527999 original size:19 final size:20
Alignment explanation
Indices: 95527977--95528015 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
95527967 CTACAGGCAG
*
95527977 ATTTTGATTCTTTTT-TTAA
1 ATTTAGATTCTTTTTATTAA
*
95527996 ATTTAGCTTCTTTTTATTAA
1 ATTTAGATTCTTTTTATTAA
95528016 TGTATTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.64
Consensus pattern (20 bp):
ATTTAGATTCTTTTTATTAA
Found at i:95529854 original size:15 final size:16
Alignment explanation
Indices: 95529836--95529866 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
95529826 ATCGAATCGA
95529836 CTTTC-AATTTATATT
1 CTTTCAAATTTATATT
95529851 CTTTCAAATTTATATT
1 CTTTCAAATTTATATT
95529867 TAGATGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (16 bp):
CTTTCAAATTTATATT
Found at i:95535492 original size:210 final size:209
Alignment explanation
Indices: 95535130--95535774 Score: 1042
Period size: 210 Copynumber: 3.1 Consensus size: 209
95535120 AATATTTGGA
*
95535130 GTTGTCCTAATTTAAGTTCAATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* *
95535195 GAAAGCTGCGCTGAGTTGGAAGTTATTT-CGATGACCGGGGGATGTTCATCTCTTGAAAAGCTTA
66 GAAAGGTGCGCTGAGTTGGAAGTT-TTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTA
* **
95535259 GCATTCTTTTTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
130 ACATTC-CATTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
95535324 GAATTAGATCTATATG
194 GAATTAGATCTATATG
95535340 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
95535405 GAAAGGTGCGCTGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
66 GAAAGGTGCGCTGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
*
95535470 CATTCACCTTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
131 CATTC-CATTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAG
95535535 AATTAGATCTATATG
195 AATTAGATCTATATG
95535550 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
1 GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
* ** * * **
95535615 GAAACGTGCAATGAGTTGGAAGTTCTTCCGATTACCGGAAGATGTTCATCTCTTGAAAAAG-TTA
66 GAAAGGTGCGCTGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTG-AAAAGCTTA
* * *
95535679 ACATTTCCAGTTGCAAAAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTATCTCAAA
130 ACA-TTCCATTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAA
* * *
95535744 TATTTACATCTATATG
194 GAATTAGATCTATATG
*
95535760 ATTGTCCTAATTTAA
1 GTTGTCCTAATTTAA
95535775 AGCCCATTCC
Statistics
Matches: 410, Mismatches: 22, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
209 3 0.01
210 399 0.97
211 8 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (209 bp):
GTTGTCCTAATTTAAGTTCGATTCCAGAGTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATT
GAAAGGTGCGCTGAGTTGGAAGTTTTTCCGATAACCGGGGGATGTTCATCTCTTGAAAAGCTTAA
CATTCCATTTGCAAGAAATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAGA
ATTAGATCTATATG
Found at i:95536253 original size:144 final size:144
Alignment explanation
Indices: 95536051--95536335 Score: 365
Period size: 144 Copynumber: 2.0 Consensus size: 144
95536041 TCCCTTCGAG
* * * * *
95536051 TTCTAAAGTTGATTGGTTGGGAAAAGCTAAAGAGTCTTCCCCCCCAACTTCAATTCCTCACTTCC
1 TTCTAAAGTTGAGTGGTTGGGAAAAGCTAAAGAGCCTTCCCCACCAACTTCAACTCCTCACTGCC
* *
95536116 CTTGAAGCTTTGACGATAAAAGAGTTTCA-AGGAATAGAAGCCTTACCGAAGTGGTTGGGAAATC
66 CTTAAAGCTTTGACGATAAAAGAGTTTCATA-AAATAGAAGCCTTACCGAAGTGGTTGGGAAATC
95536180 TCTCTTCTCTAAGGT
130 TCTCTTCTCTAAGGT
* ** *
95536195 TTCTAAATTTGAGTGGTTTTGAAAAGCTAAAGAGCCTTCCTCACCAACTTCAACTCCTCACTGCC
1 TTCTAAAGTTGAGTGGTTGGGAAAAGCTAAAGAGCCTTCCCCACCAACTTCAACTCCTCACTGCC
* ** **** * * *
95536260 CTTAAAGTTTTGATTATGTCGGGGTTTCATAAAATAGAAGCCTTGCCGGAGTGGTTGGGAAATCT
66 CTTAAAGCTTTGACGATAAAAGAGTTTCATAAAATAGAAGCCTTACCGAAGTGGTTGGGAAATCT
95536325 CTCTTCTCTAA
131 CTCTTCTCTAA
95536336 CGCGCCTGCA
Statistics
Matches: 119, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
144 118 0.99
145 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (144 bp):
TTCTAAAGTTGAGTGGTTGGGAAAAGCTAAAGAGCCTTCCCCACCAACTTCAACTCCTCACTGCC
CTTAAAGCTTTGACGATAAAAGAGTTTCATAAAATAGAAGCCTTACCGAAGTGGTTGGGAAATCT
CTCTTCTCTAAGGT
Found at i:95543534 original size:47 final size:47
Alignment explanation
Indices: 95543465--95543558 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
95543455 GTTAATGCGA
95543465 CGATAAAGTTTTAATTAGAAAGAGATTTCAATTAATTAACCTAGAGT
1 CGATAAAGTTTTAATTAGAAAGAGATTTCAATTAATTAACCTAGAGT
* *
95543512 CGATAGAGTTTTAATTAGAAAGAGATTTTAATTAATTAACCTAGAGT
1 CGATAAAGTTTTAATTAGAAAGAGATTTCAATTAATTAACCTAGAGT
95543559 TAGTTGTTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.35
Consensus pattern (47 bp):
CGATAAAGTTTTAATTAGAAAGAGATTTCAATTAATTAACCTAGAGT
Found at i:95543580 original size:47 final size:45
Alignment explanation
Indices: 95543471--95543589 Score: 132
Period size: 47 Copynumber: 2.6 Consensus size: 45
95543461 GCGACGATAA
* *
95543471 AGTTTTAATTAGAAAGAGATTTCAATTAATTAACCTAGAGTCGATAG
1 AGTTTTAATCAGAAAGAGATTTTAATTAATTAACCTAGAGT--ATAG
*
95543518 AGTTTTAATTAGAAAGAGATTTTAATTAATTAACCTAGAGT-TAG
1 AGTTTTAATCAGAAAGAGATTTTAATTAATTAACCTAGAGTATAG
* * *
95543562 TTGTTCTTACTCACGAAAGAGATATTAA
1 -AGTT-TTAATCA-GAAAGAGATTTTAA
95543590 CATAATTTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
44 3 0.05
45 3 0.05
46 5 0.08
47 53 0.83
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.36
Consensus pattern (45 bp):
AGTTTTAATCAGAAAGAGATTTTAATTAATTAACCTAGAGTATAG
Found at i:95553544 original size:17 final size:17
Alignment explanation
Indices: 95553522--95553554 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
95553512 TGATAAAAGT
95553522 AAATATTTATTTTTAAA
1 AAATATTTATTTTTAAA
*
95553539 AAATATTTTTTTTTAA
1 AAATATTTATTTTTAA
95553555 TTTTAAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AAATATTTATTTTTAAA
Found at i:95563260 original size:31 final size:31
Alignment explanation
Indices: 95563187--95563260 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
95563177 AGTGAGTGAT
* *
95563187 TAAAATAAAAACGATTTTTAACAACAATGAC
1 TAAAATAAAAATGATTTCTAACAACAATGAC
* * * *
95563218 TAAAATGAAAATGGTTTCTAACGACAATGCC
1 TAAAATAAAAATGATTTCTAACAACAATGAC
*
95563249 TAAAATTAAAAT
1 TAAAATAAAAAT
95563261 TTTTATTTCT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.27
Consensus pattern (31 bp):
TAAAATAAAAATGATTTCTAACAACAATGAC
Found at i:95564362 original size:22 final size:22
Alignment explanation
Indices: 95564318--95564377 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
95564308 TTAAAATAAA
*
95564318 ATTAAAATATTAAA-TA-ATTT
1 ATTAAAATAATAAATTATATTT
95564338 ATTAAAATAATAAATTATATTT
1 ATTAAAATAATAAATTATATTT
* * *
95564360 ATTATATTAATAATTTAT
1 ATTAAAATAATAAATTAT
95564378 TATATGACTA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.38
21 2 0.06
22 19 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTAAAATAATAAATTATATTT
Found at i:95568684 original size:210 final size:207
Alignment explanation
Indices: 95568192--95568685 Score: 634
Period size: 210 Copynumber: 2.4 Consensus size: 207
95568182 ATTGCAGAGC
* * * **
95568192 ATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTGTCTCAAAGAATTAGATCTA-TATCAT
1 ATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTATCTCAAA-ATTTAGATCTATTTTTGT
* * * *
95568256 CTTAATATAAGTTTGCTTCCAGATTTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATTGAAAG
65 CTTAATTTAAGTTTGCTTCCAAAATTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATTCAAAG
* ** * ** * *
95568321 GTGCGCTGAGTTGGAAGTTATTCCGATTACCGGGGGATTTTCATCTCTTGAAAAGCTTAGCATTC
130 CTGCAATGAGTTGGAAGTTATTCCGATAACCGGAAGATGTTCATCTCTTGAAAAGCTTAACATTC
***
95568386 TCTTTTGCAAAAA
195 TCAGCTGCAAAAA
*
95568399 ATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTCTCTCAAAATATTAGATCTAAATTTTT
1 ATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTATCTCAAAAT-TTAGATCT--ATTTTT
* * *
95568464 GTTTTAATTTAAGTTTGTTTCCAAAATTGGAAGGATTTTCCTCTCTTCAAAATCTATCAATTCAA
63 GTCTTAATTTAAGTTTGCTTCCAAAATTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATTCAA
* *
95568529 AGCTGCAATGAGTTGGAAGTTCTTCTGATAACCGGAAGATGTTCATCTCTTGAAAAAG-TTAACA
128 AGCTGCAATGAGTTGGAAGTTATTCCGATAACCGGAAGATGTTCATCTCTTG-AAAAGCTTAACA
95568593 TT-TCCAGCTGCAAAAA
192 TTCT-CAGCTGCAAAAA
*
95568609 ATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTATCTCAAATATTTACATCTATTTGGTT
1 ATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTATCTCAAA-ATTTAGATCTATTT--TT
*
95568674 GTCCTAATTTAA
63 GTCTTAATTTAA
95568686 AGCCCATGCC
Statistics
Matches: 249, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
206 1 0.00
207 53 0.21
208 4 0.02
209 2 0.01
210 182 0.73
211 7 0.03
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (207 bp):
ATTAAGCAAGATTGGAGACGGATTATCTACCTCCACTTATCTCAAAATTTAGATCTATTTTTGTC
TTAATTTAAGTTTGCTTCCAAAATTGAAAGGATTTTCCTCTCTTCAAAATCTATCAATTCAAAGC
TGCAATGAGTTGGAAGTTATTCCGATAACCGGAAGATGTTCATCTCTTGAAAAGCTTAACATTCT
CAGCTGCAAAAA
Found at i:95571037 original size:5 final size:5
Alignment explanation
Indices: 95571021--95571053 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
95571011 TTTTATTTAG
95571021 ATTAT ATATAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT AT-TAT ATTAT ATTAT ATTAT ATTAT AT
95571054 AATTAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:95571067 original size:13 final size:14
Alignment explanation
Indices: 95571036--95571072 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
95571026 ATATATATTA
95571036 TATTAT-ATTATAT
1 TATTATAATTATAT
95571049 TA-TATAATTA-AT
1 TATTATAATTATAT
95571061 TATTATAATTAT
1 TATTATAATTAT
95571073 TAATTGTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 7 0.33
13 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TATTATAATTATAT
Found at i:95571563 original size:24 final size:25
Alignment explanation
Indices: 95571532--95571580 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
95571522 ATTTATTTAC
95571532 TTATTATTTAAG-AA-ATAATAATAA
1 TTATTA-TTAAGTAATATAATAATAA
95571556 TTATTATTAAGTTAATATAATAATA
1 TTATTATTAAG-TAATATAATAATA
95571581 CAATAAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 5 0.23
24 6 0.27
25 2 0.09
26 9 0.41
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (25 bp):
TTATTATTAAGTAATATAATAATAA
Found at i:95572723 original size:45 final size:45
Alignment explanation
Indices: 95572672--95572781 Score: 159
Period size: 45 Copynumber: 2.4 Consensus size: 45
95572662 GACTACTGTC
*
95572672 ACTGTTACCGTTACTGTTACCGATTC-GACACTTTGTGTGCCGAAT
1 ACTGTTACCGTTACTGTTACAGATTCAG-CACTTTGTGTGCCGAAT
* **
95572717 ACTGTTACCGTTACTATTACAGATTCAGCACTTTGTGTGTTGAAT
1 ACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGCCGAAT
*
95572762 ACTGTTACTGTTACTGTTAC
1 ACTGTTACCGTTACTGTTAC
95572782 TGCTATTGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
45 57 0.98
46 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (45 bp):
ACTGTTACCGTTACTGTTACAGATTCAGCACTTTGTGTGCCGAAT
Found at i:95572730 original size:51 final size:51
Alignment explanation
Indices: 95572656--95572783 Score: 135
Period size: 45 Copynumber: 2.6 Consensus size: 51
95572646 CAGGCACTTA
* * *
95572656 TGTGCCGACTACTGTCACTGTTACCGTTACTGTTACCGATTC-GACACTTTG
1 TGTGCCGAATACTGTTACTGTTACCGTTACTGTTACAGATTCAG-CACTTTG
*
95572707 TGTGCCG-A-A----TACTGTTACCGTTACTATTACAGATTCAGCACTTTG
1 TGTGCCGAATACTGTTACTGTTACCGTTACTGTTACAGATTCAGCACTTTG
** *
95572752 TGTGTTGAATACTGTTACTGTTACTGTTACTG
1 TGTGCCGAATACTGTTACTGTTACCGTTACTG
95572784 CTATTGCTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
45 36 0.58
46 2 0.03
47 1 0.02
49 1 0.02
51 22 0.35
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (51 bp):
TGTGCCGAATACTGTTACTGTTACCGTTACTGTTACAGATTCAGCACTTTG
Found at i:95572772 original size:6 final size:6
Alignment explanation
Indices: 95572761--95572808 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
95572751 GTGTGTTGAA
* * * *
95572761 TACTGT TACTGT TACTGT TACTGC TATTGC TACCGT TACTGAT TACTG
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TACTG-T TACTG
95572809 ATTAGGTACT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:95576753 original size:21 final size:21
Alignment explanation
Indices: 95576727--95576767 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
95576717 GACTGCTCAA
*
95576727 ACTCCACATGTTTTGGAGTAC
1 ACTCCACATGTTGTGGAGTAC
*
95576748 ACTCCACCTGTTGTGGAGTA
1 ACTCCACATGTTGTGGAGTA
95576768 TCGCTTGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (21 bp):
ACTCCACATGTTGTGGAGTAC
Found at i:95591136 original size:20 final size:21
Alignment explanation
Indices: 95591086--95591144 Score: 75
Period size: 20 Copynumber: 2.8 Consensus size: 21
95591076 ATACATTTGT
*
95591086 AATATATGTATTTAATTATTAA
1 AATATATTTA-TTAATTATTAA
* *
95591108 TAGATATTTATTAATTA-TAA
1 AATATATTTATTAATTATTAA
95591128 AATATATTTATTAATTA
1 AATATATTTATTAATTA
95591145 AATAATTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 18 0.56
21 7 0.22
22 7 0.22
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (21 bp):
AATATATTTATTAATTATTAA
Found at i:95591178 original size:31 final size:32
Alignment explanation
Indices: 95591117--95591185 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
95591107 ATAGATATTT
95591117 ATTAATTATAAAATATATTTATTAATTAAATA
1 ATTAATTATAAAATATATTTATTAATTAAATA
*
95591149 ATTATATTATAAGAT-T-TTTATGTAA-TAAATAA
1 ATTA-ATTATAAAATATATTTAT-TAATTAAAT-A
95591181 ATTAA
1 ATTAA
95591186 AACATGACAA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
31 11 0.33
32 13 0.39
33 9 0.27
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (32 bp):
ATTAATTATAAAATATATTTATTAATTAAATA
Found at i:95591300 original size:2 final size:2
Alignment explanation
Indices: 95591293--95591321 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
95591283 TATTATATTT
95591293 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
95591322 AAGCAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:95594327 original size:54 final size:54
Alignment explanation
Indices: 95594260--95594410 Score: 257
Period size: 54 Copynumber: 2.8 Consensus size: 54
95594250 TACCCTACAA
* *
95594260 GGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
95594314 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
*
95594368 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATT
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATT
95594411 CTGTAAATTG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:95594348 original size:81 final size:81
Alignment explanation
Indices: 95594257--95594417 Score: 223
Period size: 81 Copynumber: 2.0 Consensus size: 81
95594247 TTCTACCCTA
* * *
95594257 CAAGGGTATTTCGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
* *
95594322 TGGTAATTTTGTAAAC
66 TAGTAATTCTGTAAAC
* * * * * *
95594338 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTT
1 CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
95594403 TAGTAATTCTGTAAA
66 TAGTAATTCTGTAAA
95594418 TTGAAGGTAA
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.39
Consensus pattern (81 bp):
CAAGGGTATTTCAGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTT
TAGTAATTCTGTAAAC
Found at i:95594417 original size:27 final size:27
Alignment explanation
Indices: 95594257--95594410 Score: 200
Period size: 27 Copynumber: 5.7 Consensus size: 27
95594247 TTCTACCCTA
**
95594257 CAAGGGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* *
95594284 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * *
95594311 CAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
*
95594338 CAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
* * * *
95594365 TAGGGGTATTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTAGTAATTTTATAAAC
95594392 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTAGTAATT
95594411 CTGTAAATTG
Statistics
Matches: 105, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTAGTAATTTTATAAAC
Found at i:95594435 original size:27 final size:27
Alignment explanation
Indices: 95594405--95594653 Score: 309
Period size: 27 Copynumber: 9.2 Consensus size: 27
95594395 GGGTATTTTA
*
95594405 GTAATTCTGTAAATTGAAGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAACG
*
95594432 GTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAACG
* * **
95594459 GTAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATTGAGGGTAAAACG
* * *
95594486 GTAATTCTGTAAACTGAGGGGAAAACA
1 GTAATTCTGTAAATTGAGGGTAAAACG
* * **
95594513 GTAATTCTGTAAATCGAGGATAAAATA
1 GTAATTCTGTAAATTGAGGGTAAAACG
*
95594540 GTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATTGAGGGTAAAACG
* *
95594567 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATTGAGGGTAAAACG
* * *
95594594 GTAAGTCTGTAAACTGAGGGTAAAATG
1 GTAATTCTGTAAATTGAGGGTAAAACG
* *
95594621 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATTGAGGGTAAAACG
95594648 GTAATT
1 GTAATT
95594654 TTACAAGTCG
Statistics
Matches: 189, Mismatches: 33, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 189 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATTGAGGGTAAAACG
Found at i:95594436 original size:81 final size:81
Alignment explanation
Indices: 95594268--95594437 Score: 180
Period size: 81 Copynumber: 2.1 Consensus size: 81
95594258 AAGGGTATTT
* * * *
95594268 CGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTG
***
95594333 TAAACCAAGGGTATTT
66 TAAACCAAGGGTAAAA
** * * * * *
95594349 TAGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTCTG
1 CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTG
**
95594414 TAAATTGAA-GGTAAAA
66 TAAA-CCAAGGGTAAAA
95594430 CGGTAATT
1 CGGTAATT
95594438 CTGTAAACTG
Statistics
Matches: 70, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
81 68 0.97
82 2 0.03
ACGTcount: A:0.34, C:0.08, G:0.20, T:0.38
Consensus pattern (81 bp):
CGGTAATTTTACAAACAAAGGGTATTTTAGTAATTTTACAAACCAAGGGTATTTTAGTAATTCTG
TAAACCAAGGGTAAAA
Found at i:95594667 original size:54 final size:54
Alignment explanation
Indices: 95594405--95594653 Score: 390
Period size: 54 Copynumber: 4.6 Consensus size: 54
95594395 GGGTATTTTA
* * **
95594405 GTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
* * *
95594459 GTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGGAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
*
95594513 GTAATTCTGTAAATCGAGGATAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
* * *
95594567 GTAATTCTGTAAATCGAGGGTAAAACAGTAAGTCTGTAAACTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
*
95594621 GTAATTCTGTAAATCGAGGGTAAAATGGTAATT
1 GTAATTCTGTAAATCGAGGGTAAAATAGTAATT
95594654 TTACAAGTCG
Statistics
Matches: 177, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 177 1.00
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (54 bp):
GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGTAAAACG
Found at i:95594667 original size:81 final size:81
Alignment explanation
Indices: 95594405--95594653 Score: 351
Period size: 81 Copynumber: 3.1 Consensus size: 81
95594395 GGGTATTTTA
* * * * *
95594405 GTAATTCTGTAAATTGAAGGTAAAACGGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTA
*
95594470 AATCGAGGGTAAAATA
66 AATCGAGGGTAAAATG
* * *
95594486 GTAATTCTGTAAA-CTGAGGGGAAAACAGTAATTCTGTAAA-TCGAGGATAAAATAGTAATTCTG
1 GTAATTCTGTAAATC-GAGGGTAAAACAGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTCTG
*
95594549 TAAA-CTGAGGGTAAAACG
64 TAAATC-GAGGGTAAAATG
*
95594567 GTAATTCTGTAAATCGAGGGTAAAACAGTAAGTCTGTAAACTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTA
95594632 AATCGAGGGTAAAATG
66 AATCGAGGGTAAAATG
95594648 GTAATT
1 GTAATT
95594654 TTACAAGTCG
Statistics
Matches: 147, Mismatches: 15, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
80 2 0.01
81 142 0.97
82 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTA
AATCGAGGGTAAAATG
Found at i:95595592 original size:12 final size:12
Alignment explanation
Indices: 95595570--95595619 Score: 73
Period size: 12 Copynumber: 4.1 Consensus size: 12
95595560 ATGAGGTACT
95595570 CTGTGTACCGTTA
1 CTGT-TACCGTTA
95595583 CTGTTACCGTTA
1 CTGTTACCGTTA
*
95595595 CTGTTACTGTTA
1 CTGTTACCGTTA
*
95595607 TTGTTACCGTTA
1 CTGTTACCGTTA
95595619 C
1 C
95595620 GGTGTATTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
12 29 0.88
13 4 0.12
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (12 bp):
CTGTTACCGTTA
Found at i:95595594 original size:6 final size:6
Alignment explanation
Indices: 95595579--95595619 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
95595569 TCTGTGTACC
* * *
95595579 GTTACT GTTACC GTTACT GTTACT GTTATT GTTACC GTTAC
1 GTTACT GTTACT GTTACT GTTACT GTTACT GTTACT GTTAC
95595620 GGTGTATTCT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.20, G:0.17, T:0.46
Consensus pattern (6 bp):
GTTACT
Found at i:95595602 original size:18 final size:18
Alignment explanation
Indices: 95595570--95595619 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
95595560 ATGAGGTACT
95595570 CTGTGTACCGTTACTGTTA
1 CTGT-TACCGTTACTGTTA
* *
95595589 CCGTTACTGTTACTGTTA
1 CTGTTACCGTTACTGTTA
*
95595607 TTGTTACCGTTAC
1 CTGTTACCGTTAC
95595620 GGTGTATTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 23 0.88
19 3 0.12
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (18 bp):
CTGTTACCGTTACTGTTA
Found at i:95595826 original size:18 final size:18
Alignment explanation
Indices: 95595727--95595824 Score: 124
Period size: 18 Copynumber: 5.4 Consensus size: 18
95595717 CACATAAAGG
95595727 TACTGAATAATTGACTGT
1 TACTGAATAATTGACTGT
*
95595745 TACTGAATAAATGACTGT
1 TACTGAATAATTGACTGT
* *
95595763 TACTGAATAAATGACTGC
1 TACTGAATAATTGACTGT
* * *
95595781 TACTGAATAATTAATTGC
1 TACTGAATAATTGACTGT
* *
95595799 TACTGAATGATTGAATGT
1 TACTGAATAATTGACTGT
95595817 TACTGAAT
1 TACTGAAT
95595825 GAATCGGATA
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 71 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (18 bp):
TACTGAATAATTGACTGT
Found at i:95598376 original size:13 final size:15
Alignment explanation
Indices: 95598338--95598372 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
95598328 AAATAATAAT
*
95598338 TTATATATATTTATC
1 TTATATACATTTATC
95598353 TTATATACATTTATC
1 TTATATACATTTATC
95598368 TTATA
1 TTATA
95598373 CATTAAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:95598815 original size:20 final size:18
Alignment explanation
Indices: 95598789--95598839 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
95598779 TTACACCCTA
95598789 AATATATATTATAA-TCTT
1 AATATATATTATAAGT-TT
*
95598807 AATATATATTAGAAGTTT
1 AATATATATTATAAGTTT
95598825 AATATATATATATAA
1 AATATATAT-TATAA
95598840 CAAGGGACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (18 bp):
AATATATATTATAAGTTT
Found at i:95599204 original size:41 final size:41
Alignment explanation
Indices: 95599150--95599496 Score: 451
Period size: 41 Copynumber: 8.5 Consensus size: 41
95599140 CTTTTTTGCA
* *
95599150 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATAGTG
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
* * * *
95599191 GCATTTTCCCAAAAGCGCCGCTAAAACATCGGCTTATAGCG
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
* * *
95599232 GCGTTTTTACAAAAGCGCCGCTAAAACATAGGCCTATAGCG
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
* *
95599273 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATAGCA
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
* * * * **
95599314 GCATTTTTACAAAAGCGCCGCTAAAACCTCTACCTATAGTA
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
* *
95599355 GCGTTTTTCCAGAAGCGCCGCTAAAACCTCGACCTATAGCG
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
* * * * *
95599396 GCGTTTTTACAAAGGCGCCGCTAAAACCTCTACCTATAGCA
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
* *
95599437 GCGTTTTTCCAGAAGCGCCGCTAAAACCTCGACCTATAGCG
1 GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
*
95599478 GCGTTTTTTCAAAAGCGCC
1 GCGTTTTTCCAAAAGCGCC
95599497 TCTATTCTTC
Statistics
Matches: 270, Mismatches: 36, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 270 1.00
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (41 bp):
GCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATAGCG
Found at i:95599650 original size:5 final size:5
Alignment explanation
Indices: 95599640--95599737 Score: 51
Period size: 5 Copynumber: 18.4 Consensus size: 5
95599630 ATAAGTCTAA
*
95599640 AAAAT AAAAT AAAAAC AAAAT GAATAAT AGAAA- AAAAT AAAAAT AAAAT
1 AAAAT AAAAT -AAAAT AAAAT -AA-AAT A-AAAT AAAAT -AAAAT AAAAT
* *
95599689 -AAAT AAAACAT AAAACT -AAAT AAAAT CTAAAT -AATT CAAAAT AAAAT
1 AAAAT -AAA-AT AAAA-T AAAAT AAAAT -AAAAT AAAAT -AAAAT AAAAT
95599736 AA
1 AA
95599738 CACAAAATCT
Statistics
Matches: 74, Mismatches: 5, Indels: 28
0.69 0.05 0.26
Matches are distributed among these distances:
4 11 0.15
5 30 0.41
6 27 0.36
7 6 0.08
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:95599703 original size:28 final size:28
Alignment explanation
Indices: 95599637--95599708 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
95599627 GTGATAAGTC
*
95599637 TAAAAAAT-AAAATAAAAACAAAATGAA
1 TAAAAAATAAAAATAAAAACAAAATAAA
* *
95599664 TAATAGAA-AAAAATAAAAATAAAATAAA
1 TAA-AAAATAAAAATAAAAACAAAATAAA
* *
95599692 TAAAACATAAAACTAAA
1 TAAAAAATAAAAATAAA
95599709 TAAAATCTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
27 5 0.14
28 31 0.86
ACGTcount: A:0.76, C:0.04, G:0.03, T:0.17
Consensus pattern (28 bp):
TAAAAAATAAAAATAAAAACAAAATAAA
Found at i:95599709 original size:21 final size:22
Alignment explanation
Indices: 95599671--95599712 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
95599661 GAATAATAGA
95599671 AAAAAATAAAAATAAAATAAAT
1 AAAAAATAAAAATAAAATAAAT
* *
95599693 AAAACATAAAACT-AAATAAA
1 AAAAAATAAAAATAAAATAAA
95599713 ATCTAAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.17
Consensus pattern (22 bp):
AAAAAATAAAAATAAAATAAAT
Found at i:95599719 original size:17 final size:15
Alignment explanation
Indices: 95599640--95599737 Score: 62
Period size: 15 Copynumber: 6.5 Consensus size: 15
95599630 ATAAGTCTAA
95599640 AAAATAAAATAAAAAC-
1 AAAAT-AAAT-AAAACT
* * *
95599656 AAAATGAATAATA-G
1 AAAATAAATAAAACT
*
95599670 AAAA-AAATAAAAAT
1 AAAATAAATAAAACT
95599684 AAAATAAATAAAACAT
1 AAAATAAATAAAAC-T
95599700 AAAACTAAATAAAATCT
1 AAAA-TAAATAAAA-CT
*
95599717 -AAATAATTCAAAA-T
1 AAAATAAAT-AAAACT
95599731 AAAATAA
1 AAAATAA
95599738 CACAAAATCT
Statistics
Matches: 67, Mismatches: 7, Indels: 17
0.74 0.08 0.19
Matches are distributed among these distances:
13 6 0.09
14 12 0.18
15 21 0.31
16 17 0.25
17 10 0.15
18 1 0.01
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAATAAATAAAACT
Found at i:95599790 original size:3 final size:3
Alignment explanation
Indices: 95599776--95599847 Score: 62
Period size: 3 Copynumber: 24.7 Consensus size: 3
95599766 AACTTAGTAG
* * * *
95599776 AAT AAA AAT AAT AAT ACT AAT AAT ACT AAT AAT AAC AAT -AT AAT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
95599822 AACT AAT -AT AAT AAT AAAT AA- AAT AA
1 AA-T AAT AAT AAT AAT -AAT AAT AAT AA
95599848 ACAGAAAGGT
Statistics
Matches: 55, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
2 8 0.15
3 42 0.76
4 5 0.09
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:95609450 original size:35 final size:33
Alignment explanation
Indices: 95609364--95609450 Score: 88
Period size: 35 Copynumber: 2.6 Consensus size: 33
95609354 AATTTATCAC
*
95609364 ACATGTTAAAGTATAATA-TTATATATACATTT
1 ACATGTTAAAGTATAATATTTATATATAAATTT
* * * *
95609396 AAATTTTAAA-AAAATATATTTCATATATAAACTTT
1 ACATGTTAAAGTATA-ATATTT-ATATATAAA-TTT
95609431 ACATGTTAAAGTATAATATT
1 ACATGTTAAAGTATAATATT
95609451 GTTTGAACTG
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
31 2 0.05
32 11 0.27
33 2 0.05
34 8 0.20
35 16 0.39
36 2 0.05
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.43
Consensus pattern (33 bp):
ACATGTTAAAGTATAATATTTATATATAAATTT
Found at i:95617260 original size:43 final size:43
Alignment explanation
Indices: 95617196--95617279 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
95617186 CAAACCATAA
* *
95617196 AAATTAATAGAACATAGATCATACCTGCATAAATCACATACGT
1 AAATTAATAGAACACAGATCATACCTACATAAATCACATACGT
*
95617239 AAATTAATAGAACACATATCATACCTACATAAATCACATAC
1 AAATTAATAGAACACAGATCATACCTACATAAATCACATAC
95617280 CTTAAACACG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.49, C:0.20, G:0.06, T:0.25
Consensus pattern (43 bp):
AAATTAATAGAACACAGATCATACCTACATAAATCACATACGT
Found at i:95621211 original size:47 final size:47
Alignment explanation
Indices: 95621160--95621336 Score: 202
Period size: 47 Copynumber: 3.8 Consensus size: 47
95621150 TGGTTGAACA
*
95621160 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* * *
95621207 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA--A--CG
* *
95621254 TCCGAACTCGTTGAGTTGCGTCCGAGTTCACTTATGGATGCG-AACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
* * *
95621300 CCCGAGCTCGTTGAGTTGAATCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95621337 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 13, Indels: 17
0.78 0.09 0.12
Matches are distributed among these distances:
43 2 0.02
44 5 0.05
45 1 0.01
46 36 0.33
47 57 0.52
48 3 0.03
50 5 0.05
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAACG
Found at i:95626402 original size:129 final size:128
Alignment explanation
Indices: 95626164--95626556 Score: 546
Period size: 129 Copynumber: 3.0 Consensus size: 128
95626154 AAGATATACA
*
95626164 AACAG-TACTGCCATCATGTTCTTAGATAGAGTTTAAGTTGCTTAGGACATATACTTAGTCACCA
1 AACAGTTACTGCCAT-ATGTTCTTAGAAAGAGTTTAAGTTGCTTAGGACATATACTTAGTCACCA
*
95626228 GT-GAGGGCACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
65 GTCG-GGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
* *
95626292 AACAGTTACTGCCATTATGTTCTTAGAAAGACTTTAAGTTGCTTAGGACATATACTCAGTCACCA
1 AACAGTTACTGCCA-TATGTTCTTAGAAAGAGTTTAAGTTGCTTAGGACATATACTTAGTCACCA
* * * *
95626357 GTCGGGACACTATATATAGATATAGCGTTTAGCCTTACTCCTCTTCTCCACAATTCACAATCAG
65 GTCGGGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
*
95626421 AACAGTCACTG-C---TGTTCTTAGAAAGAGTTTAAGTTGCGTAGGAGTTAGGACATATACTTAG
1 AACAGTTACTGCCATATGTTCTTAGAAAGAGTTTAAGTTGC-------TTAGGACATATACTTAG
** *
95626482 TCACCAGTCGGGACACTATACGTAGATTTAGCATTTAGCCTTCCTCTTCTTCTCCACAAGTCACA
59 TCACCAGTCGGGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACA
95626547 ATCAG
124 ATCAG
95626552 AACAG
1 AACAG
95626557 CTGATATTGT
Statistics
Matches: 237, Mismatches: 18, Indels: 17
0.87 0.07 0.06
Matches are distributed among these distances:
124 24 0.10
128 6 0.03
129 121 0.51
130 2 0.01
131 84 0.35
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (128 bp):
AACAGTTACTGCCATATGTTCTTAGAAAGAGTTTAAGTTGCTTAGGACATATACTTAGTCACCAG
TCGGGACACTATATATAGATTTAGCGTTTAGCCTTCCTCTTCTTCTCCACAAGTCACAATCAG
Found at i:95634693 original size:14 final size:14
Alignment explanation
Indices: 95634676--95634718 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
95634666 TAAGTGTTAG
*
95634676 GGGTTAATGGTTTA
1 GGGTTAAGGGTTTA
95634690 GGGTTAAGGGTTTA
1 GGGTTAAGGGTTTA
* * *
95634704 TGGTTTAGGGGTTA
1 GGGTTAAGGGTTTA
95634718 G
1 G
95634719 AGTTTAATTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.40
Consensus pattern (14 bp):
GGGTTAAGGGTTTA
Found at i:95634695 original size:21 final size:22
Alignment explanation
Indices: 95634671--95634718 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
95634661 AGATTTAAGT
95634671 GTTAGGGGTTAATGGTTTA-GG
1 GTTAGGGGTTAATGGTTTAGGG
* *
95634692 GTTAAGGGTTTATGGTTTAGGG
1 GTTAGGGGTTAATGGTTTAGGG
95634714 GTTAG
1 GTTAG
95634719 AGTTTAATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.40
Consensus pattern (22 bp):
GTTAGGGGTTAATGGTTTAGGG
Found at i:95634723 original size:21 final size:20
Alignment explanation
Indices: 95634650--95634724 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 20
95634640 GGGTTTAACA
* * *
95634650 GTTAGAGTTTAAGATTTAAGT
1 GTTAGAGTTTATGGTTT-AGG
* *
95634671 GTTAGGGGTTAATGGTTTAGG
1 GTTA-GAGTTTATGGTTTAGG
*
95634692 GTTAAGGGTTTATGGTTTAGGG
1 GTT-AGAGTTTATGGTTTA-GG
95634714 GTTAGAGTTTA
1 GTTAGAGTTTA
95634725 ATTAGATATG
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
21 29 0.66
22 15 0.34
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.41
Consensus pattern (20 bp):
GTTAGAGTTTATGGTTTAGG
Found at i:95635880 original size:158 final size:158
Alignment explanation
Indices: 95635521--95635863 Score: 394
Period size: 158 Copynumber: 2.2 Consensus size: 158
95635511 TAGTGGCGTT
* * * * * * * *
95635521 TTTTTTTAAAAAATGCCATAAAAAAACAGTAT-AGTTGAAAGAAAACGGCGTCGTTTTAGT-T-G
1 TTTTTATAAAAAACGCCA-CAAAAAACAGT-TCAGTTTAAAGAAAACAGTGCCGTTTTAGTATAT
* *
95635583 GATAGAGTATTAGTGGCGTTTTGAAAAACGCCGCAACAGAAGTAAAGTGTACTGGAAGCGTTGTC
64 GA-AG-GTATTAGTGGCGTTTTGAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAAGCGTCGTC
* *
95635648 GTTTTAGTTGAATATATAGGGGATTAGTGGCG
127 CTTTTAGTTGAATATATAGGGGATTAGCGGCG
* *
95635680 TTTTTATAGAAAACGCCACAAAAGACAGTTCAGTTTAAAGAAAACAGTGCCGTTTTAGTATATGA
1 TTTTTATAAAAAACGCCACAAAAAACAGTTCAGTTTAAAGAAAACAGTGCCGTTTTAGTATATGA
* * * *
95635745 AGGTATTAGTGGCGCTTTT-AAAAACGCCGCAAAATAATTAAAGTTTACTGTACA-CGTCGTCCT
66 AGGTATTAGTGGCG-TTTTGAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGA-AGCGTCGTCCT
*
95635808 TTTAGTTGAATATATA-GGGATTAGCGGTG
129 TTTAGTTGAATATATAGGGGATTAGCGGCG
*
95635837 TTTTT-TAAATAAACGCCGCAAAAAACA
1 TTTTTATAAA-AAACGCCACAAAAAACA
95635864 TTAGTGCTTA
Statistics
Matches: 156, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
156 3 0.02
157 32 0.21
158 96 0.62
159 23 0.15
160 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (158 bp):
TTTTTATAAAAAACGCCACAAAAAACAGTTCAGTTTAAAGAAAACAGTGCCGTTTTAGTATATGA
AGGTATTAGTGGCGTTTTGAAAAACGCCGCAAAAGAAGTAAAGTGTACTGGAAGCGTCGTCCTTT
TAGTTGAATATATAGGGGATTAGCGGCG
Found at i:95637620 original size:8 final size:8
Alignment explanation
Indices: 95637607--95637664 Score: 66
Period size: 8 Copynumber: 7.4 Consensus size: 8
95637597 TGATTATAAT
95637607 AATAGTGG
1 AATAGTGG
95637615 AATAGTGG
1 AATAGTGG
*
95637623 AATAGTGT
1 AATAGTGG
95637631 AAT--TGCG
1 AATAGTG-G
* *
95637638 TATAGTGT
1 AATAGTGG
95637646 AATAGTGG
1 AATAGTGG
95637654 AATAGTGG
1 AATAGTGG
95637662 AAT
1 AAT
95637665 TTTTTGATTG
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
6 2 0.05
7 2 0.05
8 35 0.85
9 2 0.05
ACGTcount: A:0.36, C:0.02, G:0.31, T:0.31
Consensus pattern (8 bp):
AATAGTGG
Found at i:95638446 original size:99 final size:102
Alignment explanation
Indices: 95638322--95638561 Score: 414
Period size: 104 Copynumber: 2.4 Consensus size: 102
95638312 ATGTTTACTT
*
95638322 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAGTTTAATGTCATTAATTT-AA-A-TATT
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAATTTAATGTCATTAATTTAAATATTATT
*
95638384 TTATTTTATTTTTATATTACCTAATTTTTAAATTAAC
66 TTATTTTATTTTTAAATTACCTAATTTTTAAATTAAC
95638421 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAATTTAATGTCATTAATTTAAATATTTTA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAATTTAATGTCATTAATTTAAATA--TTA
95638486 TTTTATTTTATTTTTAAATTACCTAATTTTTAAATTAAC
64 TTTTATTTTATTTTTAAATTACCTAATTTTTAAATTAAC
*
95638525 AAATTAATAAATGCAATTTAAAAGAAAGACTTAACAA
1 AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAA
95638562 TGTTCAAAAT
Statistics
Matches: 133, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
99 54 0.41
100 2 0.02
101 1 0.01
104 76 0.57
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (102 bp):
AAATTAATAAATGCAAATTAAAAGAAAGACTTAACAAATTTAATGTCATTAATTTAAATATTATT
TTATTTTATTTTTAAATTACCTAATTTTTAAATTAAC
Found at i:95638529 original size:16 final size:16
Alignment explanation
Indices: 95638495--95638529 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
95638485 ATTTTATTTT
* *
95638495 ATTTTTAAATTACCTA
1 ATTTTTAAATTAACAA
95638511 ATTTTTAAATTAACAA
1 ATTTTTAAATTAACAA
95638527 ATT
1 ATT
95638530 AATAAATGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTTTTAAATTAACAA
Found at i:95638639 original size:5 final size:5
Alignment explanation
Indices: 95638631--95638655 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
95638621 ATATTTAAAG
95638631 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
95638656 ATCACGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:95638696 original size:96 final size:96
Alignment explanation
Indices: 95638573--95639037 Score: 719
Period size: 96 Copynumber: 4.9 Consensus size: 96
95638563 GTTCAAAATA
* *
95638573 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTACTTAAATTAAATTATATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
95638638 TTATTTTATTTTATTTTAATCACGAAAAAAC
66 TTATTTTATTTTATTTTAATCACGAAAAAAC
* * *
95638669 TTTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
* * *
95638734 TTATTTTATTTTATTTTATTTAGGAAAAAAC
66 TTATTTTATTTTATTTTAATCACGAAAAAAC
95638765 --TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG-----TT
95638828 TTATTTTATTTTATTTTATTTTAATCACGAAAAAAC
61 TTATTTTATTTTATTTTATTTTAATCACGAAAAAAC
* *
95638864 CTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG-----TT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
*
95638924 TTATTTTATTTTATTTTAATCAGGAAAAAAC
66 TTATTTTATTTTATTTTAATCACGAAAAAAC
*
95638955 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
*
95639020 TTATTTTATATTATTTTA
66 TTATTTTATTTTATTTTA
95639038 TTTTAATAAC
Statistics
Matches: 337, Mismatches: 20, Indels: 24
0.88 0.05 0.06
Matches are distributed among these distances:
91 87 0.26
94 53 0.16
96 107 0.32
99 35 0.10
101 55 0.16
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (96 bp):
TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
TTATTTTATTTTATTTTAATCACGAAAAAAC
Found at i:95638734 original size:5 final size:5
Alignment explanation
Indices: 95638726--95638754 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
95638716 TGTATTTAAA
95638726 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTT
95638755 AGGAAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:95638742 original size:91 final size:91
Alignment explanation
Indices: 95638573--95639028 Score: 610
Period size: 91 Copynumber: 4.8 Consensus size: 91
95638563 GTTCAAAATA
* *
95638573 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTACTTAAATTAAATTATATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAA-----ATT
95638638 TTATTTTATTTTATTTTAATCACGAAAAAAC
61 TTATTTTATTTTATTTTAATCACGAAAAAAC
* *
95638669 TTTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATT
* *
95638734 TTATTTTATTTTATTTTATTTAGGAAAAAAC
66 TTATTTTATTTTA----A-TCACGAAAAAAC
95638765 --TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT-AA-----A--
95638828 TTATTTTATTTTATTTTATTTTAATCACGAAAAAAC
58 --ATTTTATTTTATTTTATTTTAATCACGAAAAAAC
* * *
95638864 CTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATT
*
95638929 TTATTTTATTTTAATCAGGAAAAAAC
66 TTATTTTATTTTAATCACGAAAAAAC
* *
95638955 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAAATTAAATTGTATTTAAAGTTTTATT
1 TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATT
95639020 TTATTTTAT
66 TTATTTTAT
95639029 ATTATTTTAT
Statistics
Matches: 327, Mismatches: 16, Indels: 39
0.86 0.04 0.10
Matches are distributed among these distances:
91 124 0.38
94 50 0.15
95 4 0.01
96 63 0.19
99 10 0.03
100 4 0.01
101 51 0.16
104 21 0.06
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (91 bp):
TTTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATT
TTATTTTATTTTAATCACGAAAAAAC
Found at i:95638829 original size:5 final size:5
Alignment explanation
Indices: 95638821--95638850 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
95638811 GTATTTAAAG
95638821 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
95638851 ATCACGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:95638878 original size:48 final size:46
Alignment explanation
Indices: 95638826--95638978 Score: 122
Period size: 48 Copynumber: 3.3 Consensus size: 46
95638816 TAAAGTTTTA
95638826 TTTTATTTTATTTTATTTTATTTTAATCACGAAAAAACCTTTGTCTAC
1 TTTTATTTTATTTTATTTTATTTTAATCA-GAAAAAA-CTTTGTCTAC
** ** * *
95638874 TTTTATTTTATTTTTAAATTA-CCTAATTA-AAGTAAA--TTG--TA-
1 TTTTATTTTA-TTTTATTTTATTTTAATCAGAA-AAAACTTTGTCTAC
*
95638915 TTTAAAGTTTTATTTTATTTTATTTTAATCAGGAAAAAACTTTTGTCTAC
1 TTT-TA-TTTTATTTTATTTTATTTTAATCA-GAAAAAAC-TTTGTCTAC
95638965 TTTTATTTTATTTT
1 TTTTATTTTATTTT
95638979 TAAATTACCT
Statistics
Matches: 78, Mismatches: 14, Indels: 26
0.66 0.12 0.22
Matches are distributed among these distances:
41 3 0.04
42 11 0.14
43 10 0.13
44 6 0.08
45 2 0.03
46 2 0.03
47 6 0.08
48 24 0.31
49 11 0.14
50 3 0.04
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (46 bp):
TTTTATTTTATTTTATTTTATTTTAATCAGAAAAAACTTTGTCTAC
Found at i:95638879 original size:43 final size:42
Alignment explanation
Indices: 95638831--95638978 Score: 118
Period size: 43 Copynumber: 3.3 Consensus size: 42
95638821 TTTTATTTTA
95638831 TTTTATTTTATTTTATTTTAATCACGAAAAAACCTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATCACGAAAAAA-CTTTGTCTAC
** * * ** * * *
95638874 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAA-TTGTATTTAAAG
1 TTTTATTTTA-TTTTATTTTA-ATCACGAAA--AAACTT-TGTCT--AC
*
95638922 TTTTATTTTATTTTATTTTAATCAGGAAAAAACTTTTGTCTAC
1 TTTTATTTTATTTTATTTTAATCACGAAAAAAC-TTTGTCTAC
95638965 TTTTATTTTATTTT
1 TTTTATTTTATTTT
95638979 TAAATTACCT
Statistics
Matches: 78, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
43 25 0.32
44 11 0.14
45 10 0.13
46 10 0.13
47 11 0.14
48 11 0.14
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.55
Consensus pattern (42 bp):
TTTTATTTTATTTTATTTTAATCACGAAAAAACTTTGTCTAC
Found at i:95638913 original size:101 final size:101
Alignment explanation
Indices: 95638574--95639055 Score: 693
Period size: 101 Copynumber: 5.0 Consensus size: 101
95638564 TTCAAAATAT
* *
95638574 TTTGTCTACTTTTATTTTATTTTTAAATTACCTACTTAAATTAAATTATATTTAAAG-----TTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
*
95638634 TATTTTATTTTATTTTATTTTAATCACGAAAAAACT
66 TATTTTATTTTATTTTATTTTAATCACGAAAAAACC
* * *
95638670 TTTGTCAAATTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAATTTTATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
*
95638735 TATTTTATTTTATTTTA--TT--T-AGGAAAAAA-C
66 TATTTTATTTTATTTTATTTTAATCACGAAAAAACC
95638765 -TTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
95638829 TATTTTATTTTATTTTATTTTAATCACGAAAAAACC
66 TATTTTATTTTATTTTATTTTAATCACGAAAAAACC
*
95638865 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG--------
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
* *
95638922 --TTTTATTTTATTTTATTTTAATCAGGAAAAAACT
66 TATTTTATTTTATTTTATTTTAATCACGAAAAAACC
*
95638956 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAAATAAATTAAATTGTATTTAAAGTTTTATTT
1 TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
* *
95639021 TATTTTATATTATTTTATTTTAATAACGAAAAAAC
66 TATTTTATTTTATTTTATTTTAATCACGAAAAAAC
95639056 TTGTAAATAA
Statistics
Matches: 345, Mismatches: 19, Indels: 39
0.86 0.05 0.10
Matches are distributed among these distances:
91 87 0.25
94 78 0.23
96 62 0.18
97 1 0.00
98 1 0.00
99 10 0.03
100 1 0.00
101 105 0.30
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.55
Consensus pattern (101 bp):
TTTGTCTACTTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT
TATTTTATTTTATTTTATTTTAATCACGAAAAAACC
Found at i:95639021 original size:5 final size:5
Alignment explanation
Indices: 95639013--95639042 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
95639003 GTATTTAAAG
*
95639013 TTTTA TTTTA TTTTA TATTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
95639043 ATAACGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:95639247 original size:9 final size:9
Alignment explanation
Indices: 95639235--95639350 Score: 101
Period size: 9 Copynumber: 12.7 Consensus size: 9
95639225 AAATATATAT
*
95639235 CATATTTTA
1 CATAATTTA
95639244 CATAATTTA
1 CATAATTTA
*
95639253 CATAACTTA
1 CATAATTTA
95639262 CATAA--TA
1 CATAATTTA
95639269 CATAAATATATA
1 CAT-AAT-T-TA
*
95639281 TCATATTTTA
1 -CATAATTTA
95639291 CATAATTTA
1 CATAATTTA
**
95639300 CATAATTCG
1 CATAATTTA
* *
95639309 GATAACTTA
1 CATAATTTA
*
95639318 CTTAATTTA
1 CATAATTTA
95639327 CATAATTTA
1 CATAATTTA
*
95639336 CATAACTTA
1 CATAATTTA
95639345 CATAAT
1 CATAAT
95639351 ACATAAATAT
Statistics
Matches: 85, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
7 5 0.06
8 2 0.02
9 68 0.80
10 2 0.02
11 1 0.01
12 4 0.05
13 3 0.04
ACGTcount: A:0.43, C:0.14, G:0.02, T:0.41
Consensus pattern (9 bp):
CATAATTTA
Found at i:95639290 original size:47 final size:47
Alignment explanation
Indices: 95639221--95639369 Score: 180
Period size: 47 Copynumber: 3.4 Consensus size: 47
95639211 AATCCCATCA
95639221 ACATAAATATATATCATATTTTACATAATTTACATAACTTACATAAT
1 ACATAAATATATATCATATTTTACATAATTTACATAACTTACATAAT
95639268 ACATAAATATATATCATATTTTACATAATTTACATAA-TT-CGGAT-A-
1 ACATAAATATATATCATATTTTACATAATTTACATAACTTAC--ATAAT
*
95639313 AC-T---TA-CT-T-A-A-TTTACATAATTTACATAACTTACATAAT
1 ACATAAATATATATCATATTTTACATAATTTACATAACTTACATAAT
95639351 ACATAAATATATATCATAT
1 ACATAAATATATATCATAT
95639370 AAAACTTACA
Statistics
Matches: 85, Mismatches: 2, Indels: 30
0.73 0.02 0.26
Matches are distributed among these distances:
36 20 0.24
37 4 0.05
38 4 0.05
39 2 0.02
40 1 0.01
41 2 0.02
42 2 0.02
43 1 0.01
44 2 0.02
45 4 0.05
46 4 0.05
47 39 0.46
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.40
Consensus pattern (47 bp):
ACATAAATATATATCATATTTTACATAATTTACATAACTTACATAAT
Found at i:95644542 original size:24 final size:24
Alignment explanation
Indices: 95644510--95644557 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
95644500 TTGCATTCCT
95644510 TTTTATTATATATTTCGTTTCTAA
1 TTTTATTATATATTTCGTTTCTAA
95644534 TTTTATTATATATTTCGTTTCTAA
1 TTTTATTATATATTTCGTTTCTAA
95644558 CTCTTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.04, T:0.62
Consensus pattern (24 bp):
TTTTATTATATATTTCGTTTCTAA
Found at i:95644572 original size:24 final size:24
Alignment explanation
Indices: 95644510--95644566 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
95644500 TTGCATTCCT
*
95644510 TTTTATTATATATTTCGTTTCTAA
1 TTTTAATATATATTTCGTTTCTAA
*
95644534 TTTTATTATATATTTCGTTTCTAA
1 TTTTAATATATATTTCGTTTCTAA
95644558 CTCTTTAAT
1 -T-TTTAAT
95644567 TAATTTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 24 0.80
25 1 0.03
26 5 0.17
ACGTcount: A:0.25, C:0.11, G:0.04, T:0.61
Consensus pattern (24 bp):
TTTTAATATATATTTCGTTTCTAA
Found at i:95644948 original size:27 final size:24
Alignment explanation
Indices: 95644897--95645000 Score: 117
Period size: 24 Copynumber: 4.5 Consensus size: 24
95644887 CAACTTAGAG
**
95644897 GCAGCAGCAGTAGCGAGGGAGGCA
1 GCAGCAGCAACAGCGAGGGAGGCA
95644921 GCAGCAGCAACAGCGAGGGAGGCA
1 GCAGCAGCAACAGCGAGGGAGGCA
*
95644945 GCAGCAGCAACAACGAGGGA-GC-
1 GCAGCAGCAACAGCGAGGGAGGCA
* * *
95644967 -CAGCGGCAGCAGCGAGAGAGGCA
1 GCAGCAGCAACAGCGAGGGAGGCA
95644990 G-AGGCAGCAAC
1 GCA-GCAGCAAC
95645001 GATGGCAGTA
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
21 15 0.22
22 2 0.03
23 3 0.04
24 47 0.70
ACGTcount: A:0.33, C:0.25, G:0.41, T:0.01
Consensus pattern (24 bp):
GCAGCAGCAACAGCGAGGGAGGCA
Found at i:95645304 original size:31 final size:31
Alignment explanation
Indices: 95645262--95645320 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
95645252 TTTATGCGAC
*
95645262 ATTTGCTGTTTTTGGTTAGATTTCATGCTAT
1 ATTTGCTGTTTTTGGTTAGATTTAATGCTAT
* *
95645293 ATTTTCTGTTTTTGGTTTGATTTAATGC
1 ATTTGCTGTTTTTGGTTAGATTTAATGC
95645321 AAGAAGGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.15, C:0.08, G:0.19, T:0.58
Consensus pattern (31 bp):
ATTTGCTGTTTTTGGTTAGATTTAATGCTAT
Found at i:95645514 original size:43 final size:43
Alignment explanation
Indices: 95645389--95645519 Score: 190
Period size: 43 Copynumber: 3.0 Consensus size: 43
95645379 TTTGTGAAAA
* *
95645389 AAACGCCGCTAAAAGCCATGACTTTTAGCGGCGCTTTTCCCAC
1 AAACACCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCAC
**
95645432 AAATGCCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCAC
1 AAACACCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCAC
* * * *
95645475 AAACACCTCTAAAAGCCATGGCTTTTAGCAGCTCTTTTCCCAC
1 AAACACCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCAC
95645518 AA
1 AA
95645520 GGCTTTTAGA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 80 1.00
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.25
Consensus pattern (43 bp):
AAACACCGCTAAAAGCCATGACTTTTAGCGGCACTTTTCCCAC
Found at i:95645523 original size:26 final size:26
Alignment explanation
Indices: 95645494--95645545 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
95645484 TAAAAGCCAT
*
95645494 GGCTTTTAGCA-GCTCTTTTCCCACAA
1 GGCTTTTAG-AGGCGCTTTTCCCACAA
95645520 GGCTTTTAGAGGCGCTTTTCCCACAA
1 GGCTTTTAGAGGCGCTTTTCCCACAA
95645546 ACGCTGCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.33
Consensus pattern (26 bp):
GGCTTTTAGAGGCGCTTTTCCCACAA
Found at i:95645544 original size:69 final size:69
Alignment explanation
Indices: 95645453--95645588 Score: 175
Period size: 69 Copynumber: 2.0 Consensus size: 69
95645443 AAAGCCATGA
* * *** *
95645453 CTTTTAGCGGCACTTTTCCCACAAACACCT-CTAAAAGCCATGGCTTTTAGCAGCTCTTTTCCCA
1 CTTTTAGAGGCACTTTTCCCACAAAC-CCTGCTAAAAACCACAACTTTTAGCAGCGCTTTTCCCA
95645517 CAAGG
65 CAAGG
* * *
95645522 CTTTTAGAGGCGCTTTTCCCACAAACGCTGCTAAAAACCACAACTTTTAGCGGCGCTTTTCCCAC
1 CTTTTAGAGGCACTTTTCCCACAAACCCTGCTAAAAACCACAACTTTTAGCAGCGCTTTTCCCAC
95645587 AA
66 AA
95645589 ACGTCGCTAA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
68 2 0.04
69 55 0.96
ACGTcount: A:0.26, C:0.32, G:0.15, T:0.28
Consensus pattern (69 bp):
CTTTTAGAGGCACTTTTCCCACAAACCCTGCTAAAAACCACAACTTTTAGCAGCGCTTTTCCCAC
AAGG
Found at i:95656127 original size:17 final size:18
Alignment explanation
Indices: 95656105--95656147 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
95656095 CTTAGAGTGA
95656105 AAAAAATTTGGAAA-TTT
1 AAAAAATTTGGAAAGTTT
*
95656122 AAAAAA-TTGTAAAGTTT
1 AAAAAATTTGGAAAGTTT
*
95656139 GAAAAATTT
1 AAAAAATTT
95656148 CATTTGTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 14 0.64
18 2 0.09
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (18 bp):
AAAAAATTTGGAAAGTTT
Found at i:95661641 original size:16 final size:17
Alignment explanation
Indices: 95661606--95661641 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
95661596 CATCTAAATA
*
95661606 AAATGTTGATTTATGTT
1 AAATATTGATTTATGTT
95661623 AAATATTGATTTA-GTT
1 AAATATTGATTTATGTT
95661639 AAA
1 AAA
95661642 AATTAAGAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (17 bp):
AAATATTGATTTATGTT
Found at i:95673784 original size:213 final size:213
Alignment explanation
Indices: 95673406--95673817 Score: 709
Period size: 213 Copynumber: 1.9 Consensus size: 213
95673396 AAGTTCAGTA
* *
95673406 TGAGTCAACATAACGTACAATTATACAGATAATCAAAATGGATAACAGTTATCAATGTTATTACA
1 TGAGTCAACATAACATACAATTATACAGATAATCAAAACGGATAACAGTTATCAATGTTATTACA
* *
95673471 GAGCAGTACATGGAAGAATTAATCAGTGTATGATTTTGTCATGTGTATGATGCAATGCAAAGAGG
66 GAGCAGTACATGGAAGAATCAATCAGTGTATGAGTTTGTCATGTGTATGATGCAATGCAAAGAGG
*
95673536 TTCCTACCCACCATCTGCTGCATATCATGAGTTCCCCAAAACCCGTCTACCAAACTCCAAACAGT
131 TTCCTACCCACCATCTGCTGCATACCATGAGTTCCCCAAAACCCGTCTACCAAACTCCAAACAGT
95673601 GCAATCTCAAACTCAATG
196 GCAATCTCAAACTCAATG
* * *
95673619 TGAGTCAACTTAACATACAATTATATAGATAATCAAAACGGATAACAGTTATCAGTGTTATTACA
1 TGAGTCAACATAACATACAATTATACAGATAATCAAAACGGATAACAGTTATCAATGTTATTACA
*
95673684 GAGCAGTACATGGAAGAATCAATCAGTTTATGAGTTTGTCATGTGTATGATGCAATGCAAAGAGG
66 GAGCAGTACATGGAAGAATCAATCAGTGTATGAGTTTGTCATGTGTATGATGCAATGCAAAGAGG
* *
95673749 TTCCTACCCACCATCTGCTGCATACCACT-AGTTCCCCAAAACTCGTCTACCAAACTCTAAACAG
131 TTCCTACCCACCATCTGCTGCATACCA-TGAGTTCCCCAAAACCCGTCTACCAAACTCCAAACAG
95673813 TGCAA
195 TGCAA
95673818 GCCCAAGCTC
Statistics
Matches: 187, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
213 186 0.99
214 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.27
Consensus pattern (213 bp):
TGAGTCAACATAACATACAATTATACAGATAATCAAAACGGATAACAGTTATCAATGTTATTACA
GAGCAGTACATGGAAGAATCAATCAGTGTATGAGTTTGTCATGTGTATGATGCAATGCAAAGAGG
TTCCTACCCACCATCTGCTGCATACCATGAGTTCCCCAAAACCCGTCTACCAAACTCCAAACAGT
GCAATCTCAAACTCAATG
Found at i:95678415 original size:38 final size:38
Alignment explanation
Indices: 95678353--95678475 Score: 147
Period size: 38 Copynumber: 3.2 Consensus size: 38
95678343 TTTGATGTGA
* * * *
95678353 ATCCGGGCTTAAAGACCTGCAGGCTTCGTGTTGGTAATAT
1 ATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTAT
*
95678393 ATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTAT
1 ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTAT
* * *
95678431 ATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTATTAT
1 ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTAT
*
95678469 ATTCGGG
1 ATCCGGG
95678476 CCTTCGTGCC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 61 0.84
39 5 0.07
40 7 0.10
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (38 bp):
ATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTAT
Found at i:95678534 original size:27 final size:27
Alignment explanation
Indices: 95678493--95678555 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
95678483 GCCTAGCAGG
* *
95678493 CTTCGTGCCGGTGATGTGTTTTCGGGC
1 CTTCGTGCCGATGATGTGTATTCGGGC
*
95678520 CTTCGTGCTGATGATGTGTATTCGGGC
1 CTTCGTGCCGATGATGTGTATTCGGGC
95678547 CTTCGTGCC
1 CTTCGTGCC
95678556 TAGCAGGCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.06, C:0.24, G:0.33, T:0.37
Consensus pattern (27 bp):
CTTCGTGCCGATGATGTGTATTCGGGC
Found at i:95678567 original size:43 final size:43
Alignment explanation
Indices: 95678520--95678606 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
95678510 GTTTTCGGGC
* *
95678520 CTTCGTGCTGATGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGATGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
*
95678563 CTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
1 CTTCGTGCCGATGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
95678606 C
1 C
95678607 GTAATGCAGG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
CTTCGTGCCGATGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
Found at i:95678619 original size:43 final size:43
Alignment explanation
Indices: 95678531--95678619 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 43
95678521 TTCGTGCTGA
* * ** *
95678531 TGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGG
1 TGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCAGG
95678574 TGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCAGG
1 TGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCAGG
95678617 TGA
1 TGA
95678620 AATGATATGT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.15, C:0.22, G:0.34, T:0.29
Consensus pattern (43 bp):
TGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCGTAATGCAGG
Found at i:95679020 original size:45 final size:44
Alignment explanation
Indices: 95678944--95679061 Score: 127
Period size: 45 Copynumber: 2.7 Consensus size: 44
95678934 TTATTTGAGC
* * * *
95678944 CTTT-GAGCTTAGCAGACTATAATACCAGTGAAAT-ACTATTCGGG
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCGGG
95678988 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGG
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGG
* * *
95679032 C-CTCGAGCCTAGCAAGCGA-AATGCCGGTGA
1 CTTTCGAGCCTAGCAGGCTATAATGCCGGTGA
95679062 TTTGAGAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
42 11 0.17
43 15 0.23
44 10 0.15
45 28 0.43
46 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (44 bp):
CTTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGG
Found at i:95685672 original size:12 final size:12
Alignment explanation
Indices: 95685655--95685680 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
95685645 ATTGAATTTC
95685655 AATTAATTTTAT
1 AATTAATTTTAT
95685667 AATTAATTTTAT
1 AATTAATTTTAT
95685679 AA
1 AA
95685681 ATTTTGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
AATTAATTTTAT
Found at i:95687143 original size:13 final size:13
Alignment explanation
Indices: 95687127--95687156 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
95687117 TTTTTAATTT
*
95687127 TTAATTTTCTTAG
1 TTAATTTACTTAG
95687140 TTAATTTACTTAG
1 TTAATTTACTTAG
95687153 TTAA
1 TTAA
95687157 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:95688682 original size:11 final size:12
Alignment explanation
Indices: 95688652--95688684 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
95688642 ATCACAAGTG
95688652 AATTAATTCACA
1 AATTAATTCACA
*
95688664 AATGAATTCA-A
1 AATTAATTCACA
95688675 AATTAATTCA
1 AATTAATTCA
95688685 TCTTAGGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (12 bp):
AATTAATTCACA
Found at i:95691292 original size:21 final size:21
Alignment explanation
Indices: 95691268--95691309 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
95691258 GAATTTAGCA
95691268 TCAATTTAATACAATTCATAT
1 TCAATTTAATACAATTCATAT
*
95691289 TCAATTTAATCCAATTCATAT
1 TCAATTTAATACAATTCATAT
95691310 CTTAGGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (21 bp):
TCAATTTAATACAATTCATAT
Found at i:95693332 original size:27 final size:27
Alignment explanation
Indices: 95693284--95693442 Score: 168
Period size: 27 Copynumber: 5.9 Consensus size: 27
95693274 GCGAGGCTGT
* *
95693284 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
95693311 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
95693337 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
95693364 CAGATAATCGTGGCATTA-CCACCAGA-A
1 CAGAT-ATTGTGGCA-GAGCCACCAGATA
*
95693391 CAGATATATGTGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
95693418 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
95693443 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 7, Indels: 20
0.81 0.05 0.14
Matches are distributed among these distances:
26 11 0.10
27 98 0.85
28 6 0.05
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:95693377 original size:54 final size:54
Alignment explanation
Indices: 95693284--95693442 Score: 225
Period size: 54 Copynumber: 3.0 Consensus size: 54
95693274 GCGAGGCTGT
* * * *
95693284 CAGATAT-TGTGACGAAGTCACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAGAA
* *
95693337 CAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATTA-CCACCAGAA
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCA-TAGCCACCAGAA
95693391 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAG
95693443 GACGCTTCCT
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
53 14 0.15
54 79 0.84
55 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.19
Consensus pattern (54 bp):
CAGATATATGTGGCAAAGCCACCAGATCAGATAATTGTGGCATAGCCACCAGAA
Found at i:95693699 original size:28 final size:28
Alignment explanation
Indices: 95693659--95693717 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
95693649 CCTAACTATT
95693659 TACGTACTATCAGAACACTTACCGCGCA
1 TACGTACTATCAGAACACTTACCGCGCA
95693687 TACGTACTATCAGAACACTTACCGCGCA
1 TACGTACTATCAGAACACTTACCGCGCA
95693715 TAC
1 TAC
95693718 TTACCGAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (28 bp):
TACGTACTATCAGAACACTTACCGCGCA
Found at i:95695130 original size:26 final size:26
Alignment explanation
Indices: 95695090--95695172 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 26
95695080 ATGAAATTCC
95695090 TATCATGGAACATTTACCTAATCCAT
1 TATCATGGAACATTTACCTAATCCAT
* *
95695116 TATCATGGAATATTTTCCTAATCCAT
1 TATCATGGAACATTTACCTAATCCAT
*
95695142 TATCATGGAACATTTACCTAACCCAT
1 TATCATGGAACATTTACCTAATCCAT
95695168 TATCA
1 TATCA
95695173 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (26 bp):
TATCATGGAACATTTACCTAATCCAT
Found at i:95710639 original size:73 final size:73
Alignment explanation
Indices: 95710558--95710703 Score: 274
Period size: 73 Copynumber: 2.0 Consensus size: 73
95710548 AGTTATTAAA
*
95710558 AATAAAATAATCACGAAAAGAAATAAAAGAAAAGTTAAAATGGCCTTATTACAACCCAAAAATAA
1 AATAAAATAATCACGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTACAACCCAAAAATAA
95710623 ATAATAAT
66 ATAATAAT
*
95710631 AATAAAATAATCTCGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTACAACCCAAAAATAA
1 AATAAAATAATCACGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTACAACCCAAAAATAA
95710696 ATAATAAT
66 ATAATAAT
95710704 TAAAGGAAAT
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.60, C:0.10, G:0.08, T:0.21
Consensus pattern (73 bp):
AATAAAATAATCACGAAAAGAAATAAAAGAAAAGTTAAAATGGCATTATTACAACCCAAAAATAA
ATAATAAT
Found at i:95711222 original size:24 final size:24
Alignment explanation
Indices: 95711190--95711314 Score: 187
Period size: 24 Copynumber: 5.1 Consensus size: 24
95711180 GCCTAGCCTC
*
95711190 TTTATATAACTGGGGCAAAAGCCCT
1 TTTA-ATAACTGGGGCATAAGCCCT
*
95711215 TTTAATAACTGGGGCATAAACCCT
1 TTTAATAACTGGGGCATAAGCCCT
* * *
95711239 TTTGATATCTGGGGCGTAAGCCCCT
1 TTTAATAACTGGGGCATAAG-CCCT
95711264 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
95711288 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
95711312 TTT
1 TTT
95711315 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
24 65 0.72
25 25 0.28
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (24 bp):
TTTAATAACTGGGGCATAAGCCCT
Found at i:95711264 original size:49 final size:48
Alignment explanation
Indices: 95711190--95711314 Score: 187
Period size: 49 Copynumber: 2.6 Consensus size: 48
95711180 GCCTAGCCTC
*
95711190 TTTATATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAACCCT
1 TTTA-ATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAACCCT
* * * *
95711239 TTTGATATCTGGGGCGTAAGCCCCTTTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAG-CCCTTTTAATAACTGGGGCATAAACCCT
95711288 TTTAATAACTGGGGCATAAGCCCTTTT
1 TTTAATAACTGGGGCATAAGCCCTTTT
95711315 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
48 20 0.30
49 47 0.70
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (48 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAACCCT
Found at i:95711389 original size:20 final size:20
Alignment explanation
Indices: 95711364--95711430 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
95711354 TTATGAATAC
95711364 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
95711384 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
95711404 GTCATGTACGTATCATACAT
1 ATCATGTGCATATCATACAT
*
95711424 ACCATGT
1 ATCATGT
95711431 CTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:95715411 original size:24 final size:24
Alignment explanation
Indices: 95715352--95715416 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
95715342 TCGAATTCTC
* *
95715352 TTATTTTCCC-CTCT-TTTTCTTT
1 TTATTTTCCCACTTTCTTTTATTT
* *
95715374 TGATTTTTCTCACTTTCTTTTATTT
1 TTA-TTTTCCCACTTTCTTTTATTT
95715399 TTATTTTCCCACTTTCTT
1 TTATTTTCCCACTTTCTT
95715417 CCTTCAAACG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 2 0.06
23 6 0.18
24 17 0.50
25 9 0.26
ACGTcount: A:0.09, C:0.23, G:0.02, T:0.66
Consensus pattern (24 bp):
TTATTTTCCCACTTTCTTTTATTT
Found at i:95716781 original size:15 final size:17
Alignment explanation
Indices: 95716748--95716781 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
95716738 TGCTACAAGA
95716748 TTGTCATCAACCTGTTC
1 TTGTCATCAACCTGTTC
95716765 TTGTCATC-ACC-GTTC
1 TTGTCATCAACCTGTTC
95716780 TT
1 TT
95716782 TAGGCCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 3 0.18
17 8 0.47
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (17 bp):
TTGTCATCAACCTGTTC
Found at i:95723746 original size:38 final size:39
Alignment explanation
Indices: 95723693--95723766 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 39
95723683 TTGGTTTTAG
*
95723693 CTTCATCTAATCATAAACAACAAACTAATT-AGAGATGA
1 CTTCATCTAAACATAAACAACAAACTAATTAAGAGATGA
* *
95723731 CTTCATCTAAACATAATCAATAAACTAATTAAGAGA
1 CTTCATCTAAACATAAACAACAAACTAATTAAGAGA
95723767 GAATTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
38 27 0.84
39 5 0.16
ACGTcount: A:0.49, C:0.18, G:0.07, T:0.27
Consensus pattern (39 bp):
CTTCATCTAAACATAAACAACAAACTAATTAAGAGATGA
Found at i:95726485 original size:13 final size:13
Alignment explanation
Indices: 95726449--95726490 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
95726439 TTTAAACTAA
95726449 ATTTTTCAAAAGC
1 ATTTTTCAAAAGC
* * *
95726462 ACTTCTGAAAAGC
1 ATTTTTCAAAAGC
95726475 ATTTTTCAAAAGC
1 ATTTTTCAAAAGC
95726488 ATT
1 ATT
95726491 GCCAAACTAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (13 bp):
ATTTTTCAAAAGC
Found at i:95727630 original size:42 final size:42
Alignment explanation
Indices: 95727571--95727655 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
95727561 CTAGGTGAAG
95727571 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
1 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
95727613 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
1 GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
95727655 G
1 G
95727656 AAAAAAAGGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.40, C:0.07, G:0.36, T:0.16
Consensus pattern (42 bp):
GGACCAAGAGCGAGTTTTAGGAGGATAGAGAATGGAAGAATA
Found at i:95728739 original size:14 final size:14
Alignment explanation
Indices: 95728722--95728766 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
95728712 GATATATCTA
95728722 AAAATAAATATTAT
1 AAAATAAATATTAT
95728736 AAAATAAA-ATTGAT
1 AAAATAAATATT-AT
*
95728750 ATAATAAAATATTAT
1 AAAAT-AAATATTAT
95728765 AA
1 AA
95728767 TAAAAATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 3 0.12
14 14 0.54
15 6 0.23
16 3 0.12
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (14 bp):
AAAATAAATATTAT
Found at i:95728744 original size:19 final size:19
Alignment explanation
Indices: 95728722--95728760 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
95728712 GATATATCTA
*
95728722 AAAATAAATATTATAAAAT
1 AAAATAAATATAATAAAAT
**
95728741 AAAATTGATATAATAAAAT
1 AAAATAAATATAATAAAAT
95728760 A
1 A
95728761 TTATAATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (19 bp):
AAAATAAATATAATAAAAT
Found at i:95730608 original size:14 final size:15
Alignment explanation
Indices: 95730591--95730623 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
95730581 ACCTTAGCTT
95730591 TAAATACT-TAAAAA
1 TAAATACTATAAAAA
*
95730605 TAAATATTATAAAAA
1 TAAATACTATAAAAA
95730620 TAAA
1 TAAA
95730624 ATTGACATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TAAATACTATAAAAA
Found at i:95742862 original size:53 final size:53
Alignment explanation
Indices: 95742721--95742871 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
95742711 ATAAGTGCGC
* **
95742721 CCGTTTAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
95742774 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
95742827 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
95742872 ACCGTGTAAG
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:95749724 original size:53 final size:53
Alignment explanation
Indices: 95749583--95749733 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
95749573 ATAAGTGCGC
* * **
95749583 CCGTTTAAGACCACAGCTGGGCTATGGCATCGGTGCAATGTGATAATGTGACT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
*
95749636 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGATT
1 CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
* *
95749689 CCGTATAAGACCAT-GTCTGGGATATGGCTTCGGTATGATATGTGA
1 CCGTATAAGACCATAG-CTGGGCTATGGCATCGGTAT-A-ATGTGA
95749734 ACCGTGTAAG
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (53 bp):
CCGTATAAGACCATAGCTGGGCTATGGCATCGGTATAATGTGATAATGTGACT
Found at i:95751663 original size:25 final size:24
Alignment explanation
Indices: 95751594--95751665 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 24
95751584 AGGTTTGTTC
95751594 CTGGCGTGCTAAATATCAGAGAGCA
1 CTGGCGTGCTAAAT-TCAGAGAGCA
****
95751619 CAAATGTGCT-AA-TCAGAGAGCA
1 CTGGCGTGCTAAATTCAGAGAGCA
95751641 CTGGCGTGCTAATATTCAGAGAGCA
1 CTGGCGTGCTAA-ATTCAGAGAGCA
95751666 TGCTGAAGTC
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
22 16 0.44
23 1 0.03
24 3 0.08
25 16 0.44
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.21
Consensus pattern (24 bp):
CTGGCGTGCTAAATTCAGAGAGCA
Found at i:95757375 original size:29 final size:29
Alignment explanation
Indices: 95757343--95757410 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
95757333 TGTTGCCAGG
95757343 CCGTGTGACAGCCGATGTGTGTCACACGA
1 CCGTGTGACAGCCGATGTGTGTCACACGA
95757372 CCGTGTGACAGCCGATGTGTGTCACACGA
1 CCGTGTGACAGCCGATGTGTGTCACACGA
95757401 CCGTGTGACA
1 CCGTGTGACA
95757411 ACCCTTATCC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.21
Consensus pattern (29 bp):
CCGTGTGACAGCCGATGTGTGTCACACGA
Found at i:95760104 original size:67 final size:67
Alignment explanation
Indices: 95760033--95760462 Score: 456
Period size: 67 Copynumber: 6.4 Consensus size: 67
95760023 GTTGTTGCAT
* * *
95760033 TCGAGCTAGGGTTTTACACATTATACCCCATGTTTAATGTCCTGGTGGACTCTCTATGTTGCCAT
1 TCGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTGGTGGACTCTCTATGTTGCCAT
95760098 AG
66 AG
* * * * *
95760100 TCGAGCTATGGTCTTACACATCAAACCCTATGTTTAATGTCCTGGCAGGA-TCTCTATTTTGTCA
1 TCGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTGG-TGGACTCTCTATGTTGCCA
95760164 TAG
65 TAG
* * * * * *** * * *
95760167 CCGAGCTA-GGCTCTTACACACCATACCCAATGTTTAATAAT-CTAGCATACTTTCTTTGTTACC
1 TCGAGCTATGG-TCTTACACATCATACCCCATGTTTAAT-GTCCTGGTGGACTCTCTATGTTGCC
95760230 ATAG
64 ATAG
* * * *
95760234 TCGAGCTATGGTCTTACACATCATACCCCATTTTTAATGTACTGGTAGACTCACTATGTTGCCAT
1 TCGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTGGTGGACTCTCTATGTTGCCAT
95760299 A-
66 AG
* * * * * *
95760300 ACGAAGCTAGGGTCTTACACATTATACCCCATGTTTAATGTCATGGTGGACTCTCAATGTTGTCA
1 TCG-AGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTGGTGGACTCTCTATGTTGCCA
*
95760365 CAG
65 TAG
* * * * *
95760368 TCGAGTTATGGTCTTACACACCATACCTCATGTTTAATGTCCT-ATGGACTCTCTATGTTGTCAT
1 TCGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTGGTGGACTCTCTATGTTGCCAT
95760432 AG
66 AG
* *
95760434 TCGAGCTATGGTCTTATACATTATACCCC
1 TCGAGCTATGGTCTTACACATCATACCCC
95760463 TTTACAGCCC
Statistics
Matches: 295, Mismatches: 60, Indels: 17
0.79 0.16 0.05
Matches are distributed among these distances:
66 50 0.17
67 237 0.80
68 8 0.03
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (67 bp):
TCGAGCTATGGTCTTACACATCATACCCCATGTTTAATGTCCTGGTGGACTCTCTATGTTGCCAT
AG
Found at i:95760385 original size:201 final size:200
Alignment explanation
Indices: 95760033--95760462 Score: 521
Period size: 201 Copynumber: 2.1 Consensus size: 200
95760023 GTTGTTGCAT
* * * * *
95760033 TCGAGCTAGGGTTTTACACATTATACCCCATGTTTAATGTCCTGGTGGACTCTCTATGTTGCCAT
1 TCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTACTGGTAGACTCACTATGTTGCCAT
* * * * * *
95760098 AGTCGAGCTATGGTCTTACACATCAAACCCTATGTTTAATGTCCTGGCAGGATCTCTATTTTGTC
66 AGACGAGCTAGGGTCTTACACATCAAACCCCATGTTTAATGTCATGGCAGGATCTCAATGTTGTC
* * * *
95760163 ATAGCCGAGCTAGGCTCTTACACACCATACC-CAATGTTTAATAAT-CTA-GCATACTTTCTTTG
131 ACAGCCGAGCTAGGCTCTTACACACCATACCTC-ATGTTTAAT-ATCCTATG--GACTCTCTATG
95760225 TTACCATAG
192 TTACCATAG
* *
95760234 TCGAGCTATGGTCTTACACATCATACCCCATTTTTAATGTACTGGTAGACTCACTATGTTGCCAT
1 TCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTACTGGTAGACTCACTATGTTGCCAT
* * *
95760299 A-ACGAAGCTAGGGTCTTACACATTATACCCCATGTTTAATGTCATGG-TGGACTCTCAATGTTG
66 AGACG-AGCTAGGGTCTTACACATCAAACCCCATGTTTAATGTCATGGCAGGA-TCTCAATGTTG
* * *
95760362 TCACAGTCGAGTTATGG-TCTTACACACCATACCTCATGTTTAATGTCCTATGGACTCTCTATGT
129 TCACAGCCGAGCTA-GGCTCTTACACACCATACCTCATGTTTAATATCCTATGGACTCTCTATGT
**
95760426 TGTCATAG
193 TACCATAG
*
95760434 TCGAGCTATGGTCTTATACATTATACCCC
1 TCGAGCTATGGTCTTACACATTATACCCC
95760463 TTTACAGCCC
Statistics
Matches: 196, Mismatches: 27, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
200 48 0.24
201 144 0.73
202 4 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.35
Consensus pattern (200 bp):
TCGAGCTATGGTCTTACACATTATACCCCATGTTTAATGTACTGGTAGACTCACTATGTTGCCAT
AGACGAGCTAGGGTCTTACACATCAAACCCCATGTTTAATGTCATGGCAGGATCTCAATGTTGTC
ACAGCCGAGCTAGGCTCTTACACACCATACCTCATGTTTAATATCCTATGGACTCTCTATGTTAC
CATAG
Found at i:95763320 original size:46 final size:44
Alignment explanation
Indices: 95763216--95763323 Score: 128
Period size: 44 Copynumber: 2.4 Consensus size: 44
95763206 TGTCTTTGAC
** * * *
95763216 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATACATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATACATAAT
95763260 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTC-TAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA---CATAAT
*
95763306 ATGGGCTTACATGGCTCA
1 ATGGACTTACATGGCTCA
95763324 TTTTTGTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
44 33 0.60
46 21 0.38
47 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATACATAAT
Found at i:95770233 original size:46 final size:44
Alignment explanation
Indices: 95770129--95770236 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
95770119 TGTCTTTGAC
** * * *
95770129 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
95770173 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
95770219 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
95770237 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:95772519 original size:11 final size:11
Alignment explanation
Indices: 95772503--95772527 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
95772493 AAAGGAGTAA
95772503 TTTTTTCAATC
1 TTTTTTCAATC
95772514 TTTTTTCAATC
1 TTTTTTCAATC
95772525 TTT
1 TTT
95772528 CTTTTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTTCAATC
Found at i:95774457 original size:104 final size:104
Alignment explanation
Indices: 95774277--95774484 Score: 391
Period size: 104 Copynumber: 2.0 Consensus size: 104
95774267 TGAAAAGTGG
*
95774277 CACCTTCATGGTCTTCAGGGTGTGCTTGGTTGAATAGAAAAGTGGAAAGAAAATGTTAAATTCTA
1 CACCTACATGGTCTTCAGGGTGTGCTTGGTTGAATAGAAAAGTGGAAAGAAAATGTTAAATTCTA
95774342 CCATTAGTCCCATTACTTATGAAAA-TTGTGATTTAGTCA
66 CCATTAGTCCCATTACTTAT-AAAAGTTGTGATTTAGTCA
95774381 CACCTACATGGTCTTCAGGGTGTGCTTGGTTGAATAGAAAAGTGGAAAGAAAATGTTAAATTCTA
1 CACCTACATGGTCTTCAGGGTGTGCTTGGTTGAATAGAAAAGTGGAAAGAAAATGTTAAATTCTA
95774446 CCATTAGTCCCATTACTTATAAAAGTTGTGATTTAGTCA
66 CCATTAGTCCCATTACTTATAAAAGTTGTGATTTAGTCA
95774485 TTGTACTTTA
Statistics
Matches: 102, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
103 4 0.04
104 98 0.96
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.33
Consensus pattern (104 bp):
CACCTACATGGTCTTCAGGGTGTGCTTGGTTGAATAGAAAAGTGGAAAGAAAATGTTAAATTCTA
CCATTAGTCCCATTACTTATAAAAGTTGTGATTTAGTCA
Found at i:95782364 original size:117 final size:117
Alignment explanation
Indices: 95782156--95782366 Score: 296
Period size: 117 Copynumber: 1.8 Consensus size: 117
95782146 TTTGATTTGT
* * * * * *
95782156 TGGTTATTTGTGATTTAGTATTGCAATTTGAGTGCGACAATGTAGGGTTTGTTTTGTCAATTTTT
1 TGGTTAATTGTGATTTAGTATTGCAATTTCAATGCCAAAATGTAGGGTTTGTTTTGTCAATTTGT
* * *
95782221 GACGTAATAATGGTCTCGATGTTGTTGATAAAACTGTTGTAAAATTTGTAGA
66 GACGCAATAATGGTCCCGATGATGTTGATAAAACTGTTGTAAAATTTGTAGA
* *
95782273 TGGTTAATTGTGATTTATTATTGCAATTTCAATGCCAAAATGTAGGGTTTGTTTTGTCGATTTGT
1 TGGTTAATTGTGATTTAGTATTGCAATTTCAATGCCAAAATGTAGGGTTTGTTTTGTCAATTTGT
* * *
95782338 GATGCGATAGTGGTCCCGATGATGTTGAT
66 GACGCAATAATGGTCCCGATGATGTTGAT
95782367 TTCTGTTACC
Statistics
Matches: 80, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
117 80 1.00
ACGTcount: A:0.24, C:0.08, G:0.25, T:0.43
Consensus pattern (117 bp):
TGGTTAATTGTGATTTAGTATTGCAATTTCAATGCCAAAATGTAGGGTTTGTTTTGTCAATTTGT
GACGCAATAATGGTCCCGATGATGTTGATAAAACTGTTGTAAAATTTGTAGA
Found at i:95786233 original size:51 final size:51
Alignment explanation
Indices: 95786157--95786307 Score: 248
Period size: 51 Copynumber: 3.0 Consensus size: 51
95786147 GTGCAGCAGT
*
95786157 AACATTATCCAGTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
1 AACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
* * *
95786208 AACATTATCCACTCCATCTGATGTTGCAAAATCACCAACATATTTATCAGC
1 AACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
* *
95786259 AACATTATCCACTCCATCTGACGCTGCAAAATCACCAGCATATTCATTA
1 AACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTA
95786308 CCAGCAACTT
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 91 1.00
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.28
Consensus pattern (51 bp):
AACATTATCCACTCCATCTGATGTTGCAAAATCACCAGCATATTCATTAGC
Found at i:95787565 original size:18 final size:16
Alignment explanation
Indices: 95787523--95787568 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
95787513 GAATGCTAAC
*
95787523 GATTTAGGTATTTGAA
1 GATTTAGGGATTTGAA
95787539 GATTTAGGGATTTGAA
1 GATTTAGGGATTTGAA
95787555 GATTGTTAGGGATT
1 GA-T-TTAGGGATT
95787569 CAATAAAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 17 0.63
17 1 0.04
18 9 0.33
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.41
Consensus pattern (16 bp):
GATTTAGGGATTTGAA
Done.