Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 319 of 325
Found at i:96539196 original size:2 final size:2
Alignment explanation
Indices: 96539189--96539220 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
96539179 TCAATTAAAT
96539189 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96539221 ATAAAGAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:96539489 original size:18 final size:17
Alignment explanation
Indices: 96539466--96539506 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
96539456 GAGGTTAGGT
96539466 TTTTTTTCTTTTTCTTCA
1 TTTTTTTCTTTTT-TTCA
*
96539484 TTTTTTTCTTTTTTTTA
1 TTTTTTTCTTTTTTTCA
96539501 TTTTTT
1 TTTTTT
96539507 ATTTTGGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (17 bp):
TTTTTTTCTTTTTTTCA
Found at i:96539496 original size:9 final size:9
Alignment explanation
Indices: 96539465--96539506 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
96539455 AGAGGTTAGG
96539465 TTTTTTTTC
1 TTTTTTTTC
*
96539474 TTTTTCTTC
1 TTTTTTTTC
*
96539483 ATTTTTTTC
1 TTTTTTTTC
*
96539492 TTTTTTTTA
1 TTTTTTTTC
96539501 TTTTTT
1 TTTTTT
96539507 ATTTTGGGTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:96540639 original size:21 final size:21
Alignment explanation
Indices: 96540610--96540663 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 21
96540600 CTTTTACGTA
96540610 TTATATATTTTAAACTT-CTTAT
1 TTAT-TATTTTAAA-TTACTTAT
96540632 TTATTATTTTTAAATTAACTTAT
1 TTATTA-TTTTAAATT-ACTTAT
*
96540655 ATATTATTT
1 TTATTATTT
96540664 ATTTTAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 4 0.14
22 14 0.50
23 10 0.36
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (21 bp):
TTATTATTTTAAATTACTTAT
Found at i:96540721 original size:53 final size:52
Alignment explanation
Indices: 96540664--96540785 Score: 120
Period size: 52 Copynumber: 2.3 Consensus size: 52
96540654 TATATTATTT
* * * * *
96540664 ATTTTAAAGTGATTCATATACGTCATTT-TTTAAATTTGCTTTGTGTATTATAG
1 ATTTTAAAATGATT--TATACATCATTTATTTAAACTTGCTTTATGTATTATAC
* * * *
96540717 ATTTTAAAATGCTTTATACATTATTTATTTAAACTTGTTTTATGTATTATTC
1 ATTTTAAAATGATTTATACATCATTTATTTAAACTTGCTTTATGTATTATAC
* *
96540769 ATTTTAAATTGTTTTAT
1 ATTTTAAAATGATTTAT
96540786 TATTTACTTT
Statistics
Matches: 57, Mismatches: 11, Indels: 3
0.80 0.15 0.04
Matches are distributed among these distances:
51 10 0.18
52 35 0.61
53 12 0.21
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.55
Consensus pattern (52 bp):
ATTTTAAAATGATTTATACATCATTTATTTAAACTTGCTTTATGTATTATAC
Found at i:96540748 original size:52 final size:51
Alignment explanation
Indices: 96540688--96540785 Score: 124
Period size: 52 Copynumber: 1.9 Consensus size: 51
96540678 CATATACGTC
* * *
96540688 ATTTTTTAAATTTGCTTTGTGTATTATAGATTTTAAAATGCTTTATACATT
1 ATTTTTTAAACTTGCTTTATGTATTATACATTTTAAAATGCTTTATACATT
* * * *
96540739 ATTTATTTAAACTTGTTTTATGTATTATTCATTTTAAATTGTTTTAT
1 ATTT-TTTAAACTTGCTTTATGTATTATACATTTTAAAATGCTTTAT
96540786 TATTTACTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
51 4 0.10
52 35 0.90
ACGTcount: A:0.29, C:0.05, G:0.08, T:0.58
Consensus pattern (51 bp):
ATTTTTTAAACTTGCTTTATGTATTATACATTTTAAAATGCTTTATACATT
Found at i:96540758 original size:26 final size:26
Alignment explanation
Indices: 96540717--96540785 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
96540707 TGTATTATAG
* * *
96540717 ATTTTAAAATGCTTTATACATTATTT
1 ATTTTAAATTGTTTTATACATTATTC
**
96540743 A-TTTAAACTTGTTTTATGTATTATTC
1 ATTTTAAA-TTGTTTTATACATTATTC
96540769 ATTTTAAATTGTTTTAT
1 ATTTTAAATTGTTTTAT
96540786 TATTTACTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
25 6 0.17
26 24 0.67
27 6 0.17
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (26 bp):
ATTTTAAATTGTTTTATACATTATTC
Found at i:96540796 original size:22 final size:22
Alignment explanation
Indices: 96540736--96540797 Score: 63
Period size: 26 Copynumber: 2.6 Consensus size: 22
96540726 TGCTTTATAC
96540736 ATTATTTATTTAAACTTGTTTT
1 ATTATTTATTTAAACTTGTTTT
96540758 ATGTATTATTCATTTTAAA-TTGTTTT
1 AT-TA-T-TT-A-TTTAAACTTGTTTT
96540784 ATTATTTACTTTAA
1 ATTATTTA-TTTAA
96540798 TTTTTTTTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
22 8 0.24
23 4 0.12
24 2 0.06
25 4 0.12
26 10 0.29
27 6 0.18
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (22 bp):
ATTATTTATTTAAACTTGTTTT
Found at i:96540828 original size:50 final size:47
Alignment explanation
Indices: 96540736--96540834 Score: 110
Period size: 49 Copynumber: 2.0 Consensus size: 47
96540726 TGCTTTATAC
* *
96540736 ATTATTTATTTAAACTTGTTTTATGTATTATTCATTTTAAATTGTTTT
1 ATTATTTATTTAAACTTGTTTTATATATTATTCATTTCAAATT-TTTT
** *
96540784 ATTATTTACTTTAATTTTTTTTTCATATATTA-TCAATTTCAAATTTTTT
1 ATTATTTA-TTTAAACTTGTTTT-ATATATTATTC-ATTTCAAATTTTTT
96540833 AT
1 AT
96540835 ATGTATTATC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
48 8 0.19
49 19 0.44
50 16 0.37
ACGTcount: A:0.28, C:0.06, G:0.03, T:0.63
Consensus pattern (47 bp):
ATTATTTATTTAAACTTGTTTTATATATTATTCATTTCAAATTTTTT
Found at i:96543715 original size:23 final size:23
Alignment explanation
Indices: 96543685--96543732 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
96543675 TGGCTAGTTC
96543685 CTCGTGTTACAAAACAAACCAAA
1 CTCGTGTTACAAAACAAACCAAA
*
96543708 CTCGTGTTAGAAAACAAACCAAA
1 CTCGTGTTACAAAACAAACCAAA
96543731 CT
1 CT
96543733 TTTCAAAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.46, C:0.25, G:0.10, T:0.19
Consensus pattern (23 bp):
CTCGTGTTACAAAACAAACCAAA
Found at i:96549889 original size:2 final size:2
Alignment explanation
Indices: 96549882--96549906 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96549872 AGCCCGTATG
96549882 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
96549907 GAAAGTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96551726 original size:2 final size:2
Alignment explanation
Indices: 96551719--96551743 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
96551709 AGCCCGTATG
96551719 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
96551744 GAAAGTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96562410 original size:21 final size:21
Alignment explanation
Indices: 96562384--96562424 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
96562374 ATCTGTTCAA
* *
96562384 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
96562405 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
96562425 TTGTTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:96567308 original size:30 final size:30
Alignment explanation
Indices: 96567274--96567332 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
96567264 CTTAACAAGC
*
96567274 AAATGACTCTAAAATAGTAACAAAATTAAT
1 AAATGACTCTAAAATAATAACAAAATTAAT
* *
96567304 AAATGCCTTTAAAATAATAACAAAATTAA
1 AAATGACTCTAAAATAATAACAAAATTAA
96567333 CAAAAAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.58, C:0.10, G:0.05, T:0.27
Consensus pattern (30 bp):
AAATGACTCTAAAATAATAACAAAATTAAT
Found at i:96568721 original size:22 final size:23
Alignment explanation
Indices: 96568695--96568737 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
96568685 CAACAAGAAG
*
96568695 AGGGTGACTAAA-GCAGCAGCGA
1 AGGGTGACAAAATGCAGCAGCGA
*
96568717 AGGGTTACAAAATGCAGCAGC
1 AGGGTGACAAAATGCAGCAGC
96568738 AGAAAGTTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.19, G:0.33, T:0.12
Consensus pattern (23 bp):
AGGGTGACAAAATGCAGCAGCGA
Found at i:96571953 original size:12 final size:12
Alignment explanation
Indices: 96571936--96571965 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
96571926 ATTTATCAAG
96571936 ATAAATATTAGA
1 ATAAATATTAGA
96571948 ATAAATATTAGA
1 ATAAATATTAGA
*
96571960 TTAAAT
1 ATAAAT
96571966 TTAATATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
ATAAATATTAGA
Found at i:96572063 original size:20 final size:19
Alignment explanation
Indices: 96572013--96572064 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
96572003 CTACAAGATA
96572013 AATATTAAATT-A-ACTTT
1 AATATTAAATTAATACTTT
96572030 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-ACTTT
96572050 AATATTAAATTAATA
1 AATATTAAATTAATA
96572065 AAATACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 9 0.30
18 2 0.07
19 2 0.07
20 17 0.57
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (19 bp):
AATATTAAATTAATACTTT
Found at i:96573755 original size:16 final size:16
Alignment explanation
Indices: 96573734--96573764 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96573724 CCATGCATGC
*
96573734 AAAATATAAAAGACAA
1 AAAATACAAAAGACAA
96573750 AAAATACAAAAGACA
1 AAAATACAAAAGACA
96573765 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.10, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAA
Found at i:96580870 original size:16 final size:17
Alignment explanation
Indices: 96580839--96580871 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
96580829 TTCTTCTTTC
*
96580839 ATTATTTTTTCATTTAT
1 ATTATTTTCTCATTTAT
96580856 ATTATTTTCTC-TTTAT
1 ATTATTTTCTCATTTAT
96580872 TTTTTCTTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (17 bp):
ATTATTTTCTCATTTAT
Found at i:96584320 original size:5 final size:5
Alignment explanation
Indices: 96584304--96584345 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
96584294 AGATTATTGG
* *
96584304 GTTTT GGTTTT GTTTT GTTTT GTTTT -TTTT TTTTT TTTTT GT
1 GTTTT -GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT GTTTT GT
96584346 GTAGGACAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
4 4 0.12
5 25 0.74
6 5 0.15
ACGTcount: A:0.00, C:0.00, G:0.17, T:0.83
Consensus pattern (5 bp):
GTTTT
Found at i:96587158 original size:37 final size:37
Alignment explanation
Indices: 96587079--96587161 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
96587069 AACCTTTAGT
* * *
96587079 TCGGGGCTTACCCGGACAAAATCTCCACCCGTGGTCA
1 TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
*
96587116 TCGGGTCTTACCCGGGA-ATAATCTCCACACGTAGTCA
1 TCGGGTCTTACCC-GGACAAAATCTCCACACGTAGTCA
96587153 TCGGGTCTT
1 TCGGGTCTT
96587162 TAGAGCTCGG
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 38 0.93
38 3 0.07
ACGTcount: A:0.20, C:0.31, G:0.24, T:0.24
Consensus pattern (37 bp):
TCGGGTCTTACCCGGACAAAATCTCCACACGTAGTCA
Found at i:96587348 original size:47 final size:47
Alignment explanation
Indices: 96587279--96587669 Score: 629
Period size: 47 Copynumber: 8.3 Consensus size: 47
96587269 CTCTTCGGGA
* * * *
96587279 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
96587326 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
96587373 CTTATCACATATATGCACTTTCACATTCATCACATGGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
96587420 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
96587467 CTTATCTCATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
96587514 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
96587561 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
96587608 CTTATCACATATATGCACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
96587655 CTTATCACATATATA
1 CTTATCACATATATA
96587670 TATCTCATAC
Statistics
Matches: 320, Mismatches: 24, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 320 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:96587357 original size:25 final size:25
Alignment explanation
Indices: 96587329--96587407 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
96587319 ACTCGGCCTT
*
96587329 ATCACATATATACACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
* * * *
96587354 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACTTTC-ACATTC
96587376 ATCACATATATGCACTTTCACATTC
1 ATCACATATATGCACTTTCACATTC
96587401 ATCACAT
1 ATCACAT
96587408 GGGCCATTAG
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.12
24 6 0.15
25 18 0.45
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACTTTCACATTC
Found at i:96587537 original size:141 final size:141
Alignment explanation
Indices: 96587283--96587669 Score: 693
Period size: 141 Copynumber: 2.7 Consensus size: 141
96587273 TCGGGACTTA
* * * * * *
96587283 TCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGCCTTATCACATATATACACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
* *
96587348 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCACTTTCACATTCATCACATGGGCC
66 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
96587413 ATTAGGCCTTG
131 ATTAGGCCTTG
*
96587424 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
96587489 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
66 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
96587554 ATTAGGCCTTG
131 ATTAGGCCTTG
96587565 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
1 TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
96587630 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
66 ACATTCATCACATTGGCCATTCGGCCTTATCACATATATA
96587670 TATCTCATAC
Statistics
Matches: 236, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 236 1.00
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (141 bp):
TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATGCACTTTC
ACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTG
Found at i:96591895 original size:27 final size:27
Alignment explanation
Indices: 96591857--96591910 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
96591847 AACATAAAGC
96591857 AATACTATGATAAAAGTTCCACTATCA
1 AATACTATGATAAAAGTTCCACTATCA
*
96591884 AATACTATGATAAAATTTCCACTATCA
1 AATACTATGATAAAAGTTCCACTATCA
96591911 TAACTTCTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (27 bp):
AATACTATGATAAAAGTTCCACTATCA
Found at i:96595694 original size:29 final size:28
Alignment explanation
Indices: 96595606--96595696 Score: 78
Period size: 29 Copynumber: 3.2 Consensus size: 28
96595596 TGTGTCCCCT
* *
96595606 ATTTTTCAAATTTTACAGTTTT-CCTCTA
1 ATTTTACAAATTTTACAGTTTTACCT-AA
* * * *
96595634 CTTTTA-AGATTTTACAGTTTTATCCCAT
1 ATTTTACAAATTTTACAGTTTTA-CCTAA
*
96595662 ATTTTACAAATTTTATAGTTTTACCTAGA
1 ATTTTACAAATTTTACAGTTTTACCTA-A
96595691 ATTTTA
1 ATTTTA
96595697 TGATTTGTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
27 14 0.29
28 12 0.25
29 22 0.46
ACGTcount: A:0.29, C:0.14, G:0.05, T:0.52
Consensus pattern (28 bp):
ATTTTACAAATTTTACAGTTTTACCTAA
Found at i:96596093 original size:227 final size:227
Alignment explanation
Indices: 96595698--96596132 Score: 800
Period size: 227 Copynumber: 1.9 Consensus size: 227
96595688 AGAATTTTAT
*
96595698 GATTTGTTTAGATTAGTCCATGATTGTTTCACGACCTGTTTTTAGTGTTAAATTTATTCAATTAA
1 GATTTGTTTAGATTAGTCCATGATTGTTTCACGACCTATTTTTAGTGTTAAATTTATTCAATTAA
*
96595763 TCCATTATCTAAATGACTGAAATAATATTATACTTATATATATTTTTATGAATTGTGAATAAATA
66 TCCATTATCTAAATGACTGAAATAATATTATACTTATATATATTTGTATGAATTGTGAATAAATA
*
96595828 TGTTTAATGTATCGTATTTGTGATTGTTCGTATAACATACTTTATGATA-CAGCTAAATTGGATC
131 TGTTTAATGTATCGTATTTGTGATTGTTCGTATAACATACTTTATGATATC-GCTAAATTAGATC
*
96595892 CTTTGGAAAACATATGTGTTAGGCTACCGTATC
195 CTTTAGAAAACATATGTGTTAGGCTACCGTATC
96595925 GATTTGTTTAGATTAGTCCATGATTGTTTCACGACCTATTTTTAGTGTTAAATTTATTCAATTAA
1 GATTTGTTTAGATTAGTCCATGATTGTTTCACGACCTATTTTTAGTGTTAAATTTATTCAATTAA
*
96595990 TCCATTATCTAAGTGACTGAAATAATATTATACTTATATATATTTGTATGAATTGTGAATAAATA
66 TCCATTATCTAAATGACTGAAATAATATTATACTTATATATATTTGTATGAATTGTGAATAAATA
96596055 TGTTTAATGTATCGTATTTGTGATTGTTCGTATAACATACTTTATGATATCGCTAAATTAGATCC
131 TGTTTAATGTATCGTATTTGTGATTGTTCGTATAACATACTTTATGATATCGCTAAATTAGATCC
*
96596120 TTTAGAAAGCATA
196 TTTAGAAAACATA
96596133 ATTATTGCTG
Statistics
Matches: 201, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
227 200 1.00
228 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (227 bp):
GATTTGTTTAGATTAGTCCATGATTGTTTCACGACCTATTTTTAGTGTTAAATTTATTCAATTAA
TCCATTATCTAAATGACTGAAATAATATTATACTTATATATATTTGTATGAATTGTGAATAAATA
TGTTTAATGTATCGTATTTGTGATTGTTCGTATAACATACTTTATGATATCGCTAAATTAGATCC
TTTAGAAAACATATGTGTTAGGCTACCGTATC
Found at i:96596583 original size:91 final size:92
Alignment explanation
Indices: 96596413--96596583 Score: 211
Period size: 91 Copynumber: 1.9 Consensus size: 92
96596403 CTTGAGTAGT
* * * * *
96596413 GGTTTATCCACAACGTATTCTAGTCGGTAGTCATCTACTCGACCAGTGGTTTATTCACAATGTAT
1 GGTTCATCCACAACATATTCTAGTCGGCAGCCATCTACTCGACCAGTGGTTTATTCACAACGTAT
** *
96596478 TTGCATCTTTTATCTGCAAAAATGGAC
66 TAACAGCTTTTATCTGCAAAAATGGAC
* * *
96596505 GGTTCATCCACAA-ATATTCTAGTTGGCAGCCATCTGCTCGACTAGTGGTTTA-TCTACAACGTA
1 GGTTCATCCACAACATATTCTAGTCGGCAGCCATCTACTCGACCAGTGGTTTATTC-ACAACGTA
*
96596568 TTAATAGCTTTTATCT
65 TTAACAGCTTTTATCT
96596584 TCATAGACGA
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
90 2 0.03
91 52 0.79
92 12 0.18
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.36
Consensus pattern (92 bp):
GGTTCATCCACAACATATTCTAGTCGGCAGCCATCTACTCGACCAGTGGTTTATTCACAACGTAT
TAACAGCTTTTATCTGCAAAAATGGAC
Found at i:96598361 original size:24 final size:24
Alignment explanation
Indices: 96598316--96598362 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
96598306 AGTATGGTGT
*
96598316 TGGAAATATATACATGGGATAATA
1 TGGAAATATATACATAGGATAATA
* *
96598340 TGGAAATATGTACATAGTATAAT
1 TGGAAATATATACATAGGATAAT
96598363 GTTAAGAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (24 bp):
TGGAAATATATACATAGGATAATA
Found at i:96599693 original size:42 final size:43
Alignment explanation
Indices: 96599613--96599697 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 43
96599603 GCCTAAAACG
96599613 GCGCCGTTTTAATTTTAAAAGGGGGGGACCAAAACGGTGCGTT
1 GCGCCGTTTTAATTTTAAAAGGGGGGGACCAAAACGGTGCGTT
96599656 GCGCCGTTTTAATTTTAAAA-GGGGGGACCAAAACGGTGCGTT
1 GCGCCGTTTTAATTTTAAAAGGGGGGGACCAAAACGGTGCGTT
96599698 TTGGTCCCTA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 22 0.52
43 20 0.48
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (43 bp):
GCGCCGTTTTAATTTTAAAAGGGGGGGACCAAAACGGTGCGTT
Found at i:96599791 original size:16 final size:16
Alignment explanation
Indices: 96599770--96599813 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
96599760 AAGAAAAAAG
96599770 AAGAGAGAAGGGAGAA
1 AAGAGAGAAGGGAGAA
*
96599786 AAGAGAGAGGGGAGAA
1 AAGAGAGAAGGGAGAA
*
96599802 AGGAGAG-AGGGA
1 AAGAGAGAAGGGA
96599814 TTCCGGCCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 4 0.16
16 21 0.84
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (16 bp):
AAGAGAGAAGGGAGAA
Found at i:96601356 original size:18 final size:18
Alignment explanation
Indices: 96601320--96601362 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
96601310 AACAAAATAA
* * *
96601320 TTTTAATATTTTTTTTAT
1 TTTTAATAATTTATATAT
96601338 TTTTAATAATTTATATAT
1 TTTTAATAATTTATATAT
*
96601356 TTCTAAT
1 TTTTAAT
96601363 TTTAAAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTAATAATTTATATAT
Found at i:96606046 original size:18 final size:18
Alignment explanation
Indices: 96606023--96606057 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
96606013 ACCAAATATT
*
96606023 TATTTTAATTTTTTTATA
1 TATTTTAATTTTATTATA
96606041 TATTTTAATTTTATTAT
1 TATTTTAATTTTATTAT
96606058 GCGCATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TATTTTAATTTTATTATA
Found at i:96607794 original size:10 final size:10
Alignment explanation
Indices: 96607779--96607809 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
96607769 GTTGACCATA
96607779 TTATGATGCC
1 TTATGATGCC
96607789 TTATGATGCC
1 TTATGATGCC
96607799 TTATGATGCC
1 TTATGATGCC
96607809 T
1 T
96607810 AACTTAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (10 bp):
TTATGATGCC
Found at i:96613534 original size:46 final size:46
Alignment explanation
Indices: 96613482--96613795 Score: 450
Period size: 46 Copynumber: 6.8 Consensus size: 46
96613472 AGTGTGCTCT
*
96613482 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
96613528 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
96613574 GTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
96613620 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
96613666 CTGACATGAAATGAGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** **
96613712 ATGACGGGAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
96613759 ATGACA-GAAAATGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC
96613796 TATGACATCG
Statistics
Matches: 250, Mismatches: 17, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 209 0.84
47 41 0.16
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:96619246 original size:2 final size:2
Alignment explanation
Indices: 96619236--96619269 Score: 50
Period size: 2 Copynumber: 16.5 Consensus size: 2
96619226 AATATAAAAA
*
96619236 AT AT GAT AT AT AT AT AT AT AT AT AA AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
96619270 ATTGAATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (2 bp):
AT
Found at i:96619270 original size:10 final size:10
Alignment explanation
Indices: 96619241--96619283 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
96619231 AAAAAATATG
*
96619241 ATATATATAT
1 ATATATATAA
96619251 ATATATATAA
1 ATATATATAA
96619261 ATATATATAA
1 ATATATATAA
*
96619271 TTGA-ATATAA
1 AT-ATATATAA
96619281 ATA
1 ATA
96619284 CATCAATTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 1 0.03
10 27 0.93
11 1 0.03
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
ATATATATAA
Found at i:96623638 original size:19 final size:20
Alignment explanation
Indices: 96623606--96623646 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
96623596 ATGTTTAGTA
96623606 ATTTTTCTATATTTTATATT
1 ATTTTTCTATATTTTATATT
* *
96623626 ATTTTTGTA-ATTTTATTTT
1 ATTTTTCTATATTTTATATT
96623645 AT
1 AT
96623647 ATATATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (20 bp):
ATTTTTCTATATTTTATATT
Found at i:96623644 original size:34 final size:34
Alignment explanation
Indices: 96623608--96623673 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
96623598 GTTTAGTAAT
* *
96623608 TTTTCTATAT-TTTATATTATT-TTTGTAATTTTA
1 TTTTATATATATTTA-ATAATTCTTTGTAATTTTA
96623641 TTTTATATATATTTAATAATTCTTTGTAATTTT
1 TTTTATATATATTTAATAATTCTTTGTAATTTT
96623674 TTATTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 14 0.48
34 15 0.52
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (34 bp):
TTTTATATATATTTAATAATTCTTTGTAATTTTA
Found at i:96623660 original size:24 final size:24
Alignment explanation
Indices: 96623615--96623661 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
96623605 AATTTTTCTA
**
96623615 TATTTTATATTATTTTTGTAATTT
1 TATTTTATATTATTTTAATAATTT
96623639 TATTTTATA-TATATTTAATAATT
1 TATTTTATATTAT-TTTAATAATT
96623662 CTTTGTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 3 0.15
24 17 0.85
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (24 bp):
TATTTTATATTATTTTAATAATTT
Found at i:96627272 original size:43 final size:43
Alignment explanation
Indices: 96627217--96627438 Score: 317
Period size: 43 Copynumber: 5.2 Consensus size: 43
96627207 GGTTCCTACA
*
96627217 TTATATACTTCAAATTATTATATCTTGTTTATTTTGAAATTAT
1 TTATATACTTCAAATTATTATATCTTATTTATTTTGAAATTAT
*
96627260 TTATATACTTCAAATTATTATATCTTATTTATTTTGAAATTAC
1 TTATATACTTCAAATTATTATATCTTATTTATTTTGAAATTAT
* *
96627303 TTATATACTTCAAACTATTATATCTTATTTCTTTTGAAATTAT
1 TTATATACTTCAAATTATTATATCTTATTTATTTTGAAATTAT
* *
96627346 TTATATACTTTAAACTT-TTATATATTATTTATTTTGAAATTAT
1 TTATATACTTCAAA-TTATTATATCTTATTTATTTTGAAATTAT
* *
96627389 TTATATACTTTAAACTT-TTATA-CATTATTTATTTTG-GATTAT
1 TTATATACTTCAAA-TTATTATATC-TTATTTATTTTGAAATTAT
96627431 TTATATAC
1 TTATATAC
96627439 ATATGTTTTT
Statistics
Matches: 166, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
42 13 0.08
43 152 0.92
44 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.55
Consensus pattern (43 bp):
TTATATACTTCAAATTATTATATCTTATTTATTTTGAAATTAT
Found at i:96627554 original size:26 final size:26
Alignment explanation
Indices: 96627516--96627600 Score: 88
Period size: 24 Copynumber: 3.4 Consensus size: 26
96627506 TTCTAATTAT
* *
96627516 TTTTATACGTTATTTATGTTAAACCA
1 TTTTATATGTTATTTATGTTATACCA
* *
96627542 TTTTATATATTATCTAT-TT-TA-CA
1 TTTTATATGTTATTTATGTTATACCA
*
96627565 TTTTTATATGTTATTT-TGTTATACTA
1 -TTTTATATGTTATTTATGTTATACCA
96627591 TTTTATATGT
1 TTTTATATGT
96627601 GAATAATTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
23 3 0.06
24 16 0.33
25 14 0.29
26 15 0.31
ACGTcount: A:0.27, C:0.07, G:0.06, T:0.60
Consensus pattern (26 bp):
TTTTATATGTTATTTATGTTATACCA
Found at i:96627610 original size:49 final size:50
Alignment explanation
Indices: 96627514--96627611 Score: 119
Period size: 49 Copynumber: 2.0 Consensus size: 50
96627504 TATTCTAATT
* *
96627514 ATTTTTATACGTTATTTATGTTAAACCATTTTATATATTATCTATTTTAC
1 ATTTTTATACGTTATTTATGTTAAACCATTTTATATATAATCAATTTTAC
* * * *
96627564 ATTTTTATATGTTATTT-TGTTATACTATTTTATATGTGAAT-AATTTTA
1 ATTTTTATACGTTATTTATGTTAAACCATTTTATATAT-AATCAATTTTA
96627612 AATTCTTTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
49 23 0.56
50 18 0.44
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (50 bp):
ATTTTTATACGTTATTTATGTTAAACCATTTTATATATAATCAATTTTAC
Found at i:96627719 original size:20 final size:20
Alignment explanation
Indices: 96627691--96627728 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
96627681 TATATTAAAT
*
96627691 TATTTTATATACTTTTTATA
1 TATTATATATACTTTTTATA
*
96627711 TATTATATATATTTTTTA
1 TATTATATATACTTTTTA
96627729 AAATTTGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (20 bp):
TATTATATATACTTTTTATA
Found at i:96629396 original size:2 final size:2
Alignment explanation
Indices: 96629389--96629449 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
96629379 AATGTTCTTT
96629389 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96629430 TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA
96629450 CTTTATAATA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 57 0.98
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:96629667 original size:2 final size:2
Alignment explanation
Indices: 96629660--96629689 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
96629650 TTTCCTTTAA
*
96629660 AT AT AT AT AT AT CT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96629690 TAACATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96629934 original size:2 final size:2
Alignment explanation
Indices: 96629927--96629967 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
96629917 TCTCCTGTTT
96629927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96629968 GTTTTATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:96630203 original size:2 final size:2
Alignment explanation
Indices: 96630196--96630230 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
96630186 AATACTCATT
96630196 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96630231 TAATGATTGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:96630863 original size:131 final size:132
Alignment explanation
Indices: 96630621--96630903 Score: 361
Period size: 131 Copynumber: 2.2 Consensus size: 132
96630611 GTATTCATTC
* * * ***
96630621 AAAAATTCTTCAAAACGAAGATGAGATTCAATGTTTGGTGTTTCGAGGAATCGTGCCCTAACACG
1 AAAAATTCTTCAAAACGAAGACGAGATTCAATATTTAGCAATTCGAGGAATCGTGCCCTAACACG
* * * *
96630686 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTCTT
66 TTGGGTTGCAATTTCGCGTCTGCTCAAAATAATCGAATACCACTTCAAAATTCCACTCATATCTT
96630751 -T
131 CT
* * * * **
96630752 TAAAATTCTTCAAAACGAAGACGAGATTCTATATTTAGCAATTCGTGGAATTGTGCCCTAACGTG
1 AAAAATTCTTCAAAACGAAGACGAGATTCAATATTTAGCAATTCGAGGAATCGTGCCCTAACACG
* * * *
96630817 TTGGTTTGCAATTTTGCGTCTGCTTAAAATAATCGAATACCCCTTCAAAATTCCACTCATATCTT
66 TTGGGTTGCAATTTCGCGTCTGCTCAAAATAATCGAATACCACTTCAAAATTCCACTCATATCTT
96630882 CT
131 CT
* *
96630884 AAAAATTATTTAAAACGAAG
1 AAAAATTCTTCAAAACGAAG
96630904 GCAATATTTG
Statistics
Matches: 128, Mismatches: 23, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
131 110 0.86
132 18 0.14
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (132 bp):
AAAAATTCTTCAAAACGAAGACGAGATTCAATATTTAGCAATTCGAGGAATCGTGCCCTAACACG
TTGGGTTGCAATTTCGCGTCTGCTCAAAATAATCGAATACCACTTCAAAATTCCACTCATATCTT
CT
Found at i:96630940 original size:131 final size:130
Alignment explanation
Indices: 96630662--96630942 Score: 305
Period size: 131 Copynumber: 2.1 Consensus size: 130
96630652 TGTTTGGTGT
* *
96630662 TTCGAGGAATCGTGCCCTAACACGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATATC
1 TTCGA-GAATCGTGCCCTAACACGTTGGGTTGCAATTTCGCGTCTGCTCAAAATAATCGAATACC
* * * * * *
96630727 ACTTCAAAATTTCACTCATGTCTTTTAAAATTCTTCAAAACGAAGACGAGATTCTATATTTAGCA
65 ACTTCAAAATTCCACTCATATCTTTAAAAATTATTCAAAACGAAGACAAGATTCTACATTTAGCA
96630792 A
130 A
* * ** * * *
96630793 TTCGTGGAATTGTGCCCTAACGTGTTGGTTTGCAATTTTGCGTCTGCTTAAAATAATCGAATACC
1 TTCG-AGAATCGTGCCCTAACACGTTGGGTTGCAATTTCGCGTCTGCTCAAAATAATCGAATACC
* * * * * *
96630858 CCTTCAAAATTCCACTCATATCTTCTAAAAATTATTTAAAACGAAGGCAATATT-TGGCGTTT-G
65 ACTTCAAAATTCCACTCATATCTT-TAAAAATTATTCAAAACGAAGACAAGATTCT-ACATTTAG
96630921 ACAA
128 -CAA
*
96630925 TTCGAGAATCATGCCCTA
1 TTCGAGAATCGTGCCCTA
96630943 TTGTGCTGGG
Statistics
Matches: 122, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
131 89 0.73
132 33 0.27
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (130 bp):
TTCGAGAATCGTGCCCTAACACGTTGGGTTGCAATTTCGCGTCTGCTCAAAATAATCGAATACCA
CTTCAAAATTCCACTCATATCTTTAAAAATTATTCAAAACGAAGACAAGATTCTACATTTAGCAA
Found at i:96633641 original size:10 final size:11
Alignment explanation
Indices: 96633624--96633649 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
96633614 ATTTCTCTGC
96633624 CAAAAAAAAAA
1 CAAAAAAAAAA
96633635 CAAAAAAAAAA
1 CAAAAAAAAAA
96633646 CAAA
1 CAAA
96633650 CAAACAAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:96637066 original size:18 final size:18
Alignment explanation
Indices: 96637043--96637081 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
96637033 CCCCTCACTC
*
96637043 TCCACCTTTTTGTTTTTT
1 TCCACCTTTTTGTTTGTT
96637061 TCCACCTTTTTGTTTGTT
1 TCCACCTTTTTGTTTGTT
96637079 TCC
1 TCC
96637082 TCTTCACTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.05, C:0.26, G:0.08, T:0.62
Consensus pattern (18 bp):
TCCACCTTTTTGTTTGTT
Found at i:96643025 original size:4 final size:4
Alignment explanation
Indices: 96643016--96643046 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
96643006 TTCAAACTTC
96643016 AATT AATT AATT AATT AATT AATT AA-T AATT
1 AATT AATT AATT AATT AATT AATT AATT AATT
96643047 TAAAAAACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:96644036 original size:74 final size:75
Alignment explanation
Indices: 96643927--96644075 Score: 266
Period size: 74 Copynumber: 2.0 Consensus size: 75
96643917 CCTAAGATAA
*
96643927 AGTATCTCCCGAATTGGATTTGATAGACAATATATTAGTCTTTCAATTGGTTTGCTCATTTCTGA
1 AGTATCTCCCGAATTGGACTTGATAGACAATATATTAGTCTTTCAATTGGTTTGCTCATTTCTGA
96643992 TTAGACTAAG
66 TTAGACTAAG
96644002 AGTATCTTCCC-AATTGGACTT-ATAGACAATATATTAGTCTTTCAATTGGTTTGCTCATTTCTG
1 AGTATC-TCCCGAATTGGACTTGATAGACAATATATTAGTCTTTCAATTGGTTTGCTCATTTCTG
96644065 ATTAGACTAAG
65 ATTAGACTAAG
96644076 GACATGTTTA
Statistics
Matches: 72, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
74 53 0.74
75 15 0.21
76 4 0.06
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.40
Consensus pattern (75 bp):
AGTATCTCCCGAATTGGACTTGATAGACAATATATTAGTCTTTCAATTGGTTTGCTCATTTCTGA
TTAGACTAAG
Found at i:96648591 original size:20 final size:20
Alignment explanation
Indices: 96648566--96648605 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
96648556 ACAGACTTAC
96648566 TTGTGTGAAACATGTAATTG
1 TTGTGTGAAACATGTAATTG
96648586 TTGTGTGAAACATGTAATTG
1 TTGTGTGAAACATGTAATTG
96648606 AGGGCATACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.25, T:0.40
Consensus pattern (20 bp):
TTGTGTGAAACATGTAATTG
Found at i:96654071 original size:22 final size:22
Alignment explanation
Indices: 96654046--96654097 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
96654036 AATGTTTTTG
* * * *
96654046 TGTCTCGAGACATTGGGGTTTA
1 TGTCTCAAAACATTGAGCTTTA
96654068 TGTCTCAAAACATTGAGCTTTA
1 TGTCTCAAAACATTGAGCTTTA
96654090 TGTCTCAA
1 TGTCTCAA
96654098 CTCGAGATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (22 bp):
TGTCTCAAAACATTGAGCTTTA
Found at i:96661375 original size:27 final size:28
Alignment explanation
Indices: 96661337--96661398 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 28
96661327 TAACTTTTTT
*
96661337 TAAAAT-TAAAAA-GCTAAATAAATTATA
1 TAAAATATAAAAATACT-AATAAATTATA
* *
96661364 TAAAATAT-AAAATACTCATCAATTATA
1 TAAAATATAAAAATACTAATAAATTATA
96661391 TAAAATAT
1 TAAAATAT
96661399 TCTTTAGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (28 bp):
TAAAATATAAAAATACTAATAAATTATA
Found at i:96662139 original size:28 final size:28
Alignment explanation
Indices: 96662107--96662160 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
96662097 TTAATTGTCT
*
96662107 ATTTAATTATAAATTA-TTATATAATAAA
1 ATTTAATT-TAAACTATTTATATAATAAA
*
96662135 ATTTAATTTAAACTATTTTTATAATA
1 ATTTAATTTAAACTATTTATATAATA
96662161 GTTAAATTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 6 0.26
28 17 0.74
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (28 bp):
ATTTAATTTAAACTATTTATATAATAAA
Found at i:96665511 original size:19 final size:19
Alignment explanation
Indices: 96665480--96665520 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
96665470 AAAAGCAGGG
96665480 AAAGAAAGAAAGAAAGGAGA
1 AAAGAAAGAAAGAAAGGA-A
96665500 AAAGAAAG-AAGAAAGGAA
1 AAAGAAAGAAAGAAAGGAA
96665518 AAA
1 AAA
96665521 TTGAAGGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.19
19 9 0.43
20 8 0.38
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (19 bp):
AAAGAAAGAAAGAAAGGAA
Found at i:96669186 original size:39 final size:39
Alignment explanation
Indices: 96669105--96669306 Score: 350
Period size: 39 Copynumber: 5.2 Consensus size: 39
96669095 CATGGTAACC
*
96669105 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAACCCGGATATCACAACT
* * *
96669145 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
96669184 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
96669223 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
*
96669262 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
96669301 CGCACA
1 CGCACA
96669307 TTCATACACA
Statistics
Matches: 154, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 137 0.89
40 17 0.11
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
Found at i:96677094 original size:39 final size:39
Alignment explanation
Indices: 96677013--96677214 Score: 350
Period size: 39 Copynumber: 5.2 Consensus size: 39
96677003 CATGGTAACC
*
96677013 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAACCCGGATATCACAACT
* * *
96677053 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
96677092 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
96677131 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
*
96677170 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
1 CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
96677209 CGCACA
1 CGCACA
96677215 TTCATACACA
Statistics
Matches: 154, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 137 0.89
40 17 0.11
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.22
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAACCCGGATATCACAACT
Found at i:96679126 original size:23 final size:23
Alignment explanation
Indices: 96679091--96679134 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
96679081 TTTAGGCAAT
96679091 AGAAGAAGAAGAAGAGAAAAAGA
1 AGAAGAAGAAGAAGAGAAAAAGA
* *
96679114 AGAAGGAGGAGAAGAGAAAAA
1 AGAAGAAGAAGAAGAGAAAAA
96679135 ATAGATATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (23 bp):
AGAAGAAGAAGAAGAGAAAAAGA
Found at i:96684294 original size:17 final size:16
Alignment explanation
Indices: 96684272--96684314 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
96684262 TTTAGGGCCT
96684272 AAATTGAATAAATTGCA
1 AAATTGAATAAATTG-A
*
96684289 AAATTGGTATAAATTGA
1 AAATT-GAATAAATTGA
*
96684306 TAATTGAAT
1 AAATTGAAT
96684315 GTGAAATGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 3 0.14
17 10 0.45
18 9 0.41
ACGTcount: A:0.49, C:0.02, G:0.14, T:0.35
Consensus pattern (16 bp):
AAATTGAATAAATTGA
Found at i:96697500 original size:13 final size:13
Alignment explanation
Indices: 96697484--96697516 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96697474 TTTAATTAAA
*
96697484 TTAGTTAATTAGT
1 TTAGATAATTAGT
96697497 TTAGATAATTAGT
1 TTAGATAATTAGT
96697510 TTA-ATAA
1 TTAGATAA
96697517 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:96702900 original size:22 final size:21
Alignment explanation
Indices: 96702872--96702964 Score: 83
Period size: 22 Copynumber: 4.7 Consensus size: 21
96702862 CATTGAATCC
96702872 TCTTATTTTT-TTATCTATTTAT
1 TCTTATTTTTATT-TCTATTT-T
*
96702894 TCTTATTTTTATTTTTATTTT
1 TCTTATTTTTATTTCTATTTT
*
96702915 T-TTATTTTTATTT-T-TCTT
1 TCTTATTTTTATTTCTATTTT
*
96702933 T-TGATTTTTATTTCTA-TTT
1 TCTTATTTTTATTTCTATTTT
*
96702952 TATTA-TTTTATTT
1 TCTTATTTTTATTT
96702965 TCAAAGACAT
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
18 15 0.24
19 13 0.21
20 14 0.23
21 2 0.03
22 16 0.26
23 2 0.03
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (21 bp):
TCTTATTTTTATTTCTATTTT
Found at i:96702905 original size:6 final size:6
Alignment explanation
Indices: 96702879--96702965 Score: 77
Period size: 6 Copynumber: 13.7 Consensus size: 6
96702869 TCCTCTTATT
* *
96702879 TTTTTA TCTATTTA TTCTTA TTTTTA TTTTTA TTTTTTTA TTTTTA TTTTTC
1 TTTTTA T-T-TTTA TTTTTA TTTTTA TTTTTA --TTTTTA TTTTTA TTTTTA
* *
96702931 TTTTGA TTTTTA TTTCTA -TTTTA TTATTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA -T-TTTTA TTTT
96702966 CAAAGACATA
Statistics
Matches: 66, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
5 4 0.06
6 43 0.65
7 3 0.05
8 16 0.24
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:96702918 original size:26 final size:26
Alignment explanation
Indices: 96702879--96702965 Score: 81
Period size: 26 Copynumber: 3.4 Consensus size: 26
96702869 TCCTCTTATT
* *
96702879 TTTTTATCTATTTATTCTTATTTTTA
1 TTTTTATTTTTTTATTCTTATTTTTA
* *
96702905 TTTTTATTTTTTTATTTTTATTTTTC
1 TTTTTATTTTTTTATTCTTATTTTTA
* *
96702931 TTTTGATTTTTAT-TTC-TA-TTTTA
1 TTTTTATTTTTTTATTCTTATTTTTA
96702954 TTATTTTATTTT
1 -T-TTTTATTTT
96702966 CAAAGACATA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
23 4 0.08
24 3 0.06
25 10 0.20
26 33 0.66
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (26 bp):
TTTTTATTTTTTTATTCTTATTTTTA
Found at i:96702958 original size:32 final size:32
Alignment explanation
Indices: 96702874--96702965 Score: 89
Period size: 32 Copynumber: 2.8 Consensus size: 32
96702864 TTGAATCCTC
* * *
96702874 TTATTTTTTTATCTATTTATTCTTATTTTTATTT
1 TTATTTTATTAT-TA-TTATTTTTATTTTGATTT
* * *
96702908 TTATTTTTTTATTTTTATTTTTCTTTTGATTT
1 TTATTTTATTATTATTATTTTTATTTTGATTT
96702940 TTATTTCTATT-TTATTA-TTTTATTTT
1 TTATTT-TATTATTATTATTTTTATTTT
96702966 CAAAGACATA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
31 8 0.16
32 26 0.52
33 4 0.08
34 12 0.24
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (32 bp):
TTATTTTATTATTATTATTTTTATTTTGATTT
Found at i:96705869 original size:13 final size:13
Alignment explanation
Indices: 96705853--96705885 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
96705843 TTTAATTAAA
*
96705853 TTAGTTAATTAGT
1 TTAGATAATTAGT
96705866 TTAGATAATTAGT
1 TTAGATAATTAGT
96705879 TTA-ATAA
1 TTAGATAA
96705886 AAAACCCTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:96723029 original size:20 final size:21
Alignment explanation
Indices: 96722985--96723029 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
96722975 CCTTCTCGTA
96722985 TCTTTAATTTTGTTTTTACAC
1 TCTTTAATTTTGTTTTTACAC
* *
96723006 -CTTTACTTTTGTTTTT-CTC
1 TCTTTAATTTTGTTTTTACAC
96723025 TCTTT
1 TCTTT
96723030 TGGACTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.11, C:0.18, G:0.04, T:0.67
Consensus pattern (21 bp):
TCTTTAATTTTGTTTTTACAC
Found at i:96726209 original size:17 final size:17
Alignment explanation
Indices: 96726178--96726210 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
96726168 TGTATAAAAC
96726178 TTATTTTATTGTTAATT
1 TTATTTTATTGTTAATT
96726195 TTATTATTATT-TTAAT
1 TTATT-TTATTGTTAAT
96726211 GACATTTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (17 bp):
TTATTTTATTGTTAATT
Found at i:96726222 original size:30 final size:30
Alignment explanation
Indices: 96726186--96726248 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
96726176 ACTTATTTTA
*
96726186 TTGTTAATTTTATTATTATTTTA-ATGACAT
1 TTGTTAATTTTATTATTAGTTTAGA-GACAT
*
96726216 TTGTTAATTTTGTTATTAGTTTAGAGACAT
1 TTGTTAATTTTATTATTAGTTTAGAGACAT
96726246 TTG
1 TTG
96726249 CTTATTTAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTAGTTTAGAGACAT
Found at i:96726331 original size:18 final size:18
Alignment explanation
Indices: 96726310--96726349 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
96726300 AAAATATTTA
*
96726310 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
96726328 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
96726346 TTTT
1 TTTT
96726350 TAAAATAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:96730047 original size:20 final size:19
Alignment explanation
Indices: 96730024--96730088 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
96730014 CAAAAAAACA
96730024 TCAAAATAATTTTCAAAGAT
1 TCAAAATAATTTTCAAA-AT
* *
96730044 TCAACATAATTTTTAAAAT
1 TCAAAATAATTTTCAAAAT
*
96730063 TCAAAAT-ATTTATAAAAATT
1 TCAAAATAATTT-TCAAAA-T
96730083 TCAAAA
1 TCAAAA
96730089 CTTATATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 4 0.10
19 13 0.33
20 22 0.56
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (19 bp):
TCAAAATAATTTTCAAAAT
Found at i:96730126 original size:21 final size:21
Alignment explanation
Indices: 96730100--96730139 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
96730090 TTATATATTT
96730100 AAAAAAAATTATAAAAATTGC
1 AAAAAAAATTATAAAAATTGC
* *
96730121 AAAAAAGATTCTAAAAATT
1 AAAAAAAATTATAAAAATT
96730140 ATTTGATGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAAAAAATTATAAAAATTGC
Found at i:96732087 original size:20 final size:19
Alignment explanation
Indices: 96732040--96732087 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
96732030 AAGGACTTTT
*
96732040 ATTTATTTTATTCCAATCA
1 ATTTATTTAATTCCAATCA
**
96732059 ATTTGATTTAATTTTAATCAA
1 ATTT-ATTTAATTCCAATC-A
96732080 ATTTATTT
1 ATTTATTT
96732088 GTTGACTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
19 4 0.17
20 15 0.62
21 5 0.21
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.56
Consensus pattern (19 bp):
ATTTATTTAATTCCAATCA
Found at i:96734928 original size:11 final size:11
Alignment explanation
Indices: 96734905--96734971 Score: 82
Period size: 11 Copynumber: 6.2 Consensus size: 11
96734895 TATGAACTTG
*
96734905 TTCGACCATGA
1 TTCGACAATGA
*
96734916 TTTGACAATGA
1 TTCGACAATGA
96734927 TTCGACAATGA
1 TTCGACAATGA
*
96734938 TTCGACAGTGA
1 TTCGACAATGA
*
96734949 TTTGA-AATGA
1 TTCGACAATGA
*
96734959 TTCGACTATGA
1 TTCGACAATGA
96734970 TT
1 TT
96734972 TGGTATTGGA
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
10 8 0.17
11 39 0.83
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (11 bp):
TTCGACAATGA
Found at i:96734959 original size:21 final size:21
Alignment explanation
Indices: 96734912--96734973 Score: 72
Period size: 21 Copynumber: 2.9 Consensus size: 21
96734902 TTGTTCGACC
* *
96734912 ATGATTTGACAATGATTCGACA
1 ATGATTCGAC-ATGATTTGACA
96734934 ATGATTCGACAGTGATTTGA-A
1 ATGATTCGACA-TGATTTGACA
96734955 ATGATTCGACTATGATTTG
1 ATGATTCGAC-ATGATTTG
96734974 GTATTGGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 19 0.53
22 17 0.47
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (21 bp):
ATGATTCGACATGATTTGACA
Found at i:96738891 original size:44 final size:44
Alignment explanation
Indices: 96738828--96738921 Score: 170
Period size: 44 Copynumber: 2.1 Consensus size: 44
96738818 CTGATCACAT
96738828 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
* *
96738872 TTATCACTTGTCATTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
96738916 TTATCA
1 TTATCA
96738922 TTTTTTAGCT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (44 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
Found at i:96738965 original size:116 final size:118
Alignment explanation
Indices: 96738825--96739044 Score: 363
Period size: 123 Copynumber: 1.8 Consensus size: 118
96738815 ACACTGATCA
*
96738825 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACT-AC-CACTTATCACTTGTCATTG
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTCACTCACTTATCACTTGTCATTA
*
96738888 ATCAGATAAGTGTAGCTAAAGCTACCACTTATCATTTTTTAGCTACCACTTAT
66 ATCAGATAAATGTAGCTAAAGCTACCACTTATCATTTTTTAGCTACCACTTAT
96738941 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTACCACTTATCACTTATCACTTGT
1 CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACT--CAC---TCACTTATCACTTGT
96739006 CATTAATCAGATAAATGTAGCTAAAGCTACCACTTATCA
61 CATTAATCAGATAAATGTAGCTAAAGCTACCACTTATCA
96739045 CTTGTCACTG
Statistics
Matches: 95, Mismatches: 2, Indels: 7
0.91 0.02 0.07
Matches are distributed among these distances:
116 42 0.44
119 2 0.02
123 51 0.54
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.34
Consensus pattern (118 bp):
CATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAACTCACTCACTTATCACTTGTCATTA
ATCAGATAAATGTAGCTAAAGCTACCACTTATCATTTTTTAGCTACCACTTAT
Found at i:96739006 original size:51 final size:51
Alignment explanation
Indices: 96738930--96739053 Score: 194
Period size: 51 Copynumber: 2.4 Consensus size: 51
96738920 CATTTTTTAG
* * *
96738930 CTACCACTTATCATTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAA
1 CTACCACTTATCACTTATCACTTGTCACTAATCAGATAAATGTAGCTAAAA
* *
96738981 CTACCACTTATCACTTATCACTTGTCATTAATCAGATAAATGTAGCTAAAG
1 CTACCACTTATCACTTATCACTTGTCACTAATCAGATAAATGTAGCTAAAA
*
96739032 CTACCACTTATCACTTGTCACT
1 CTACCACTTATCACTTATCACT
96739054 GATCAGAAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.32, C:0.24, G:0.10, T:0.34
Consensus pattern (51 bp):
CTACCACTTATCACTTATCACTTGTCACTAATCAGATAAATGTAGCTAAAA
Found at i:96740317 original size:51 final size:51
Alignment explanation
Indices: 96740252--96740374 Score: 158
Period size: 51 Copynumber: 2.4 Consensus size: 51
96740242 TCCCAAATTT
* * * **
96740252 ACTTTATACTTCATCCGGA-ATTATTACTTTGTTGTTCTAGCTTCAACAAGA
1 ACTTCATATTTCATCCGGATA-TATTACTTTATTACTCTAGCTTCAACAAGA
*
96740303 ACTTCATATTTCATCCGGATATATTACTTTATTACTCTAGTTTCAACAAGA
1 ACTTCATATTTCATCCGGATATATTACTTTATTACTCTAGCTTCAACAAGA
* *
96740354 GCTTCATATTTCATCCAGATA
1 ACTTCATATTTCATCCGGATA
96740375 ACTTAGTTCT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 62 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.10, T:0.41
Consensus pattern (51 bp):
ACTTCATATTTCATCCGGATATATTACTTTATTACTCTAGCTTCAACAAGA
Found at i:96740921 original size:25 final size:26
Alignment explanation
Indices: 96740895--96740943 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
96740885 TCTTTTTCCT
*
96740895 TTTA-TTTCATTT-TATTCTATTTAC
1 TTTATTTTAATTTGTATTCTATTTAC
*
96740919 TTTATTTTAATTTGTTTTCTATTTA
1 TTTATTTTAATTTGTATTCTATTTA
96740944 ATTAATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.19
25 7 0.33
26 10 0.48
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.69
Consensus pattern (26 bp):
TTTATTTTAATTTGTATTCTATTTAC
Found at i:96742049 original size:137 final size:137
Alignment explanation
Indices: 96741803--96742076 Score: 397
Period size: 137 Copynumber: 2.0 Consensus size: 137
96741793 GTTTTTCTTC
* * **
96741803 ATGTTTGATAGCCCCTTGAACTGCATGTTTTGTCACTGTGTTTAATCCCTTATTTGAACAGTTGT
1 ATGTTTGATAGCCCATTGAACTACATGTTTTGTCACTGTGTTTAATCCCTTATTCAAACAGTTGT
* * * *
96741868 CTAAACTAACTTTTGAACGACAGTCTAGACAAACTTTTAGGACAACTCAAGTGTAGTATAAAGTG
66 CTAAACTAACTTTTGAACAACAATCTAGACAAACTTTCAGGACAACTCAAGTGTAATATAAAGTG
96741933 AGCATTT
131 AGCATTT
* *
96741940 ATGTTTGATAGCTCATTGAACTACATGTTTTGTCACTGTGTTTAATCCCTTATTCAAATAGTTGT
1 ATGTTTGATAGCCCATTGAACTACATGTTTTGTCACTGTGTTTAATCCCTTATTCAAACAGTTGT
* * * *
96742005 CTAGATTAACTTTTGGACAACAATCTAGACATGA-TTTCAGGACAACTCAAGTGTAATATAAAGT
66 CTAAACTAACTTTTGAACAACAATCTAGACA-AACTTTCAGGACAACTCAAGTGTAATATAAAGT
*
96742069 TAGCATTT
130 GAGCATTT
96742077 TTTTTTTTGA
Statistics
Matches: 121, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
137 120 0.99
138 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (137 bp):
ATGTTTGATAGCCCATTGAACTACATGTTTTGTCACTGTGTTTAATCCCTTATTCAAACAGTTGT
CTAAACTAACTTTTGAACAACAATCTAGACAAACTTTCAGGACAACTCAAGTGTAATATAAAGTG
AGCATTT
Found at i:96743633 original size:21 final size:22
Alignment explanation
Indices: 96743581--96743635 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
96743571 GTGTAATAGT
*
96743581 TTTTGGGTATTTTCGAGTGTGAG
1 TTTTGAGT-TTTTCGAGTGTGAG
* * *
96743604 TTGTAAGTTTTTCGAGT-TGTG
1 TTTTGAGTTTTTCGAGTGTGAG
96743625 TTTTGAGTTTT
1 TTTTGAGTTTT
96743636 AGAACACTTG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 12 0.46
22 9 0.35
23 5 0.19
ACGTcount: A:0.13, C:0.04, G:0.29, T:0.55
Consensus pattern (22 bp):
TTTTGAGTTTTTCGAGTGTGAG
Found at i:96756104 original size:22 final size:22
Alignment explanation
Indices: 96756061--96756105 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
96756051 TATCCAAACA
*
96756061 ATAATAATAAAATAGTAACAAC
1 ATAATAATAAAATAGCAACAAC
* * *
96756083 ATAATAGTAGAATAGCAGCAAC
1 ATAATAATAAAATAGCAACAAC
96756105 A
1 A
96756106 CGTGAGAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.11, G:0.11, T:0.20
Consensus pattern (22 bp):
ATAATAATAAAATAGCAACAAC
Found at i:96756562 original size:2 final size:2
Alignment explanation
Indices: 96756550--96756579 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
96756540 AAAAGAGGGT
*
96756550 GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
96756580 TGATGGGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:96759574 original size:25 final size:25
Alignment explanation
Indices: 96759544--96759593 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
96759534 AAAAATGAGA
*
96759544 TTATTTTCTAAATATGGGTTGTAGG
1 TTATTTTCTAAATATGAGTTGTAGG
96759569 TTATTTTCTAAATATGAGTTGTAGG
1 TTATTTTCTAAATATGAGTTGTAGG
96759594 AGTTCATCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.22, T:0.48
Consensus pattern (25 bp):
TTATTTTCTAAATATGAGTTGTAGG
Found at i:96761054 original size:53 final size:54
Alignment explanation
Indices: 96760996--96761105 Score: 204
Period size: 53 Copynumber: 2.1 Consensus size: 54
96760986 TGAAGATAAG
96760996 TTGATGCACGTTCACCATAACCAACAATGGACAGAATTTCCTGAT-AAACTACC
1 TTGATGCACGTTCACCATAACCAACAATGGACAGAATTTCCTGATAAAACTACC
*
96761049 TTGATGCACGTTCACCATAACCAACAATGGACGGAATTTCCTGATAAAACTACC
1 TTGATGCACGTTCACCATAACCAACAATGGACAGAATTTCCTGATAAAACTACC
96761103 TTG
1 TTG
96761106 TAAATTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 44 0.80
54 11 0.20
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (54 bp):
TTGATGCACGTTCACCATAACCAACAATGGACAGAATTTCCTGATAAAACTACC
Found at i:96766503 original size:24 final size:24
Alignment explanation
Indices: 96766471--96766519 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
96766461 TTCAATTGAA
96766471 ATTTTGCATAATTGAACCTTCCTC
1 ATTTTGCATAATTGAACCTTCCTC
96766495 ATTTTGCATAATTGAACCTTCCTC
1 ATTTTGCATAATTGAACCTTCCTC
96766519 A
1 A
96766520 AAGGGTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (24 bp):
ATTTTGCATAATTGAACCTTCCTC
Found at i:96774019 original size:8 final size:8
Alignment explanation
Indices: 96774006--96774032 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
96773996 ATCATATTTA
96774006 TTTATCTC
1 TTTATCTC
96774014 TTTATCTC
1 TTTATCTC
96774022 TTTATCTC
1 TTTATCTC
96774030 TTT
1 TTT
96774033 CACTTGAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTATCTC
Found at i:96779221 original size:31 final size:31
Alignment explanation
Indices: 96779177--96779283 Score: 87
Period size: 31 Copynumber: 3.5 Consensus size: 31
96779167 AACAAAAAAA
96779177 TTAGGTA-TCAAATTAGGAAAAAGAGTCAAGT
1 TTAGGTACT-AAATTAGGAAAAAGAGTCAAGT
* ** *
96779208 TCAGGTACTAAATT-GGACCTAA-A-TAAAGT
1 TTAGGTACTAAATTAGGA-AAAAGAGTCAAGT
* * * *
96779237 TTAAGTACTAACTTAAGAAAAAGTGTCAAGT
1 TTAGGTACTAAATTAGGAAAAAGAGTCAAGT
*
96779268 TTAGGTACCAAATTAG
1 TTAGGTACTAAATTAG
96779284 ACAAAAAATT
Statistics
Matches: 55, Mismatches: 16, Indels: 10
0.68 0.20 0.12
Matches are distributed among these distances:
29 18 0.33
30 6 0.11
31 30 0.55
32 1 0.02
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (31 bp):
TTAGGTACTAAATTAGGAAAAAGAGTCAAGT
Found at i:96782605 original size:31 final size:31
Alignment explanation
Indices: 96782548--96782615 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
96782538 CTTTAACAAA
* * *
96782548 ATAAAAATAATTTTTAAAATTCTAAAAATAT
1 ATAAAAATAATTATTAAAAATATAAAAATAT
96782579 ATAACAAATAA-TATTAAAAATATAAAAATA-
1 ATAA-AAATAATTATTAAAAATATAAAAATAT
96782609 A-AAAAAT
1 ATAAAAAT
96782616 TCAATTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
28 4 0.12
29 2 0.06
30 1 0.03
31 20 0.61
32 6 0.18
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (31 bp):
ATAAAAATAATTATTAAAAATATAAAAATAT
Found at i:96782753 original size:9 final size:9
Alignment explanation
Indices: 96782739--96782773 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
96782729 TCAACTGATG
96782739 AATTTTTTT
1 AATTTTTTT
96782748 AA--TTTTT
1 AATTTTTTT
96782755 AATTTTTTT
1 AATTTTTTT
96782764 AATTTTTTT
1 AATTTTTTT
96782773 A
1 A
96782774 TATAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.29
9 17 0.71
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (9 bp):
AATTTTTTT
Found at i:96782760 original size:16 final size:16
Alignment explanation
Indices: 96782739--96782770 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
96782729 TCAACTGATG
96782739 AATTTTTTTAATTTTT
1 AATTTTTTTAATTTTT
96782755 AATTTTTTTAATTTTT
1 AATTTTTTTAATTTTT
96782771 TTATATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (16 bp):
AATTTTTTTAATTTTT
Found at i:96784918 original size:24 final size:25
Alignment explanation
Indices: 96784891--96784940 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
96784881 AATATATAAT
*
96784891 ATTAATTTTAAATATTT-TTAAGTA
1 ATTAATATTAAATATTTATTAAGTA
*
96784915 ATTAATATTAATTATTTATTAAGTA
1 ATTAATATTAAATATTTATTAAGTA
96784940 A
1 A
96784941 ACAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
ATTAATATTAAATATTTATTAAGTA
Found at i:96787594 original size:23 final size:23
Alignment explanation
Indices: 96787564--96787610 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
96787554 CCCAAGTACC
96787564 TATTGTTGTTGCTTTTCTTTTGG
1 TATTGTTGTTGCTTTTCTTTTGG
96787587 TATTGTTGTTGCTTTTCTTTTGG
1 TATTGTTGTTGCTTTTCTTTTGG
96787610 T
1 T
96787611 CCTATAAGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.04, C:0.09, G:0.21, T:0.66
Consensus pattern (23 bp):
TATTGTTGTTGCTTTTCTTTTGG
Found at i:96792891 original size:20 final size:20
Alignment explanation
Indices: 96792861--96792901 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 20
96792851 TACGAGTACA
96792861 GTTTTTGTTTTTGTATTTTTT
1 GTTTTTGTTTTTGT-TTTTTT
96792882 GTTTTT-TTTTTGTTTTTTT
1 GTTTTTGTTTTTGTTTTTTT
96792901 G
1 G
96792902 CAATGAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 7 0.35
20 7 0.35
21 6 0.30
ACGTcount: A:0.02, C:0.00, G:0.15, T:0.83
Consensus pattern (20 bp):
GTTTTTGTTTTTGTTTTTTT
Found at i:96792892 original size:11 final size:11
Alignment explanation
Indices: 96792876--96792900 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96792866 TGTTTTTGTA
96792876 TTTTTTGTTTT
1 TTTTTTGTTTT
96792887 TTTTTTGTTTT
1 TTTTTTGTTTT
96792898 TTT
1 TTT
96792901 GCAATGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:96796942 original size:21 final size:21
Alignment explanation
Indices: 96796916--96796956 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
96796906 AGACAAGCGA
* *
96796916 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
96796937 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
96796957 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:96804783 original size:7 final size:7
Alignment explanation
Indices: 96804771--96804795 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
96804761 TAAAAAAACC
96804771 CAAATTT
1 CAAATTT
96804778 CAAATTT
1 CAAATTT
96804785 CAAATTT
1 CAAATTT
96804792 CAAA
1 CAAA
96804796 ACTTGACAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (7 bp):
CAAATTT
Found at i:96809829 original size:15 final size:16
Alignment explanation
Indices: 96809803--96809836 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
96809793 ATATAATTAT
96809803 TATAATTTAACATATA
1 TATAATTTAACATATA
96809819 TATAA-TTAACATATA
1 TATAATTTAACATATA
96809834 TAT
1 TAT
96809837 TCAGATTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (16 bp):
TATAATTTAACATATA
Found at i:96813336 original size:24 final size:24
Alignment explanation
Indices: 96813304--96813350 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
96813294 GATTCAAATG
96813304 TATACACCGAACTTTTATTTTGAA
1 TATACACCGAACTTTTATTTTGAA
96813328 TATACACCGAACTTTTATTTTGA
1 TATACACCGAACTTTTATTTTGA
96813351 TTCAATTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.09, T:0.43
Consensus pattern (24 bp):
TATACACCGAACTTTTATTTTGAA
Found at i:96813362 original size:28 final size:28
Alignment explanation
Indices: 96813282--96813362 Score: 80
Period size: 24 Copynumber: 2.9 Consensus size: 28
96813272 ATATACATTA
* *
96813282 AACTTTGATTATGATTCAAATGTATACACCG
1 AACTTTTATTTTGATTC-AAT-T-TACACCG
*
96813313 AACTTTTATTTTG----AATATACACCG
1 AACTTTTATTTTGATTCAATTTACACCG
96813337 AACTTTTATTTTGATTCAATTTACAC
1 AACTTTTATTTTGATTCAATTTACAC
96813363 ATTTAAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
24 20 0.48
26 3 0.07
28 8 0.19
31 11 0.26
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (28 bp):
AACTTTTATTTTGATTCAATTTACACCG
Found at i:96813797 original size:2 final size:2
Alignment explanation
Indices: 96813792--96813823 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
96813782 AAAAGGGCCA
96813792 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96813824 TTTTTTTGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96816600 original size:239 final size:239
Alignment explanation
Indices: 96816181--96816874 Score: 1086
Period size: 239 Copynumber: 2.9 Consensus size: 239
96816171 ATGCTTATGT
* *
96816181 TGGTTTTAGATAAAAAAAATGAAGAGGAATTTGAGAAAGCCTTGGTGGAAGGCTTTCATCACCAA
1 TGGTTTTGGATAAAAAAAATGAAGAGGAATTTGAGAAAGCCTTGGTGGAAGGCTTTCATCATCAA
96816246 ACTTTTAGGTAAAACTTTAGCTTACAGAATACTAGTGTCTCGAATCTCCATTCTTTATACTTTGA
66 ACTTTTAGGTAAAACTTTAGCTTACAGAATACTAGTGTCTCGAATCTCCATTCTTTATACTTTGA
* *
96816311 TGGGTAATTTTGAATGCATTGGTATGGGTAATGACTTCTATGTCGTTAAGTTTAATAATGAAGAA
131 TGGGCAATTTTGAATGCATTGATATGGGTAATGACTTCTATGTCGTTAAGTTTAATAATGAAGAA
*
96816376 GACAGGGCTAAAGTTTTTATTGTTACGATGGTGTTCTCCTACGA
196 GACAGGGCTAAAGTTTTGATTGTTACGATGGTGTTCTCCTACGA
96816420 TGGTTTTGGATAAAAAAAATGAAGAGGAATTTGAGAAAGCCTTGGTGGAAGGCTTTCATCATCAA
1 TGGTTTTGGATAAAAAAAATGAAGAGGAATTTGAGAAAGCCTTGGTGGAAGGCTTTCATCATCAA
96816485 ACTTTTAGGTAAAACTTTAGCTTACAGAATACTAGTGTCTCGAATCTCCATTCTTTATACTTTGA
66 ACTTTTAGGTAAAACTTTAGCTTACAGAATACTAGTGTCTCGAATCTCCATTCTTTATACTTTGA
*
96816550 TGGGCAATTTTGAATGCAATGATATGGGTAATGACTTCTATGTCGTTAAGTTTAATAATGAAGAA
131 TGGGCAATTTTGAATGCATTGATATGGGTAATGACTTCTATGTCGTTAAGTTTAATAATGAAGAA
* *
96816615 GACAGGGCTAAAATTTTGATTGTTATGATGGTGTTCTCCTACGA
196 GACAGGGCTAAAGTTTTGATTGTTACGATGGTGTTCTCCTACGA
* *
96816659 TGGTTTTGGATTAAAAAAAATGAAGAGGAATTTGAGAAAGCCTTGGTGGAAGGCTCTCATAATCA
1 TGGTTTTGGA-TAAAAAAAATGAAGAGGAATTTGAGAAAGCCTTGGTGGAAGGCTTTCATCATCA
* * * * * * * *
96816724 AAATTTTAGGCAAAACTTTAACTTTCA-AGATGCTACTGTCTCAAATCTCCATTCTTTGTACTTT
65 AACTTTTAGGTAAAACTTTAGCTTACAGA-ATACTAGTGTCTCGAATCTCCATTCTTTATACTTT
* * * * * * *
96816788 GGTGGGCAATTTTGAATGTATTGATATAGCTAAT-AGCTTTTATGTTGTTAAGTTTGATAATGAA
129 GATGGGCAATTTTGAATGCATTGATATGGGTAATGA-CTTCTATGTCGTTAAGTTTAATAATGAA
* * * *
96816852 GAGGATAGGGCTGAAGTCTTGAT
193 GAAGACAGGGCTAAAGTTTTGAT
96816875 CAAGAGACTA
Statistics
Matches: 421, Mismatches: 31, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
239 243 0.58
240 178 0.42
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.35
Consensus pattern (239 bp):
TGGTTTTGGATAAAAAAAATGAAGAGGAATTTGAGAAAGCCTTGGTGGAAGGCTTTCATCATCAA
ACTTTTAGGTAAAACTTTAGCTTACAGAATACTAGTGTCTCGAATCTCCATTCTTTATACTTTGA
TGGGCAATTTTGAATGCATTGATATGGGTAATGACTTCTATGTCGTTAAGTTTAATAATGAAGAA
GACAGGGCTAAAGTTTTGATTGTTACGATGGTGTTCTCCTACGA
Found at i:96819742 original size:59 final size:60
Alignment explanation
Indices: 96819660--96819787 Score: 186
Period size: 59 Copynumber: 2.1 Consensus size: 60
96819650 ATTTATCTAG
** *
96819660 ATATTAATATGAGATATTAAATTTAACTTAAAATTTATCTAAATAGTATTTTATTAATTTA
1 ATATTAATATGAGA-ATTAAATTTAACTTAAAATTTATCTAAATAAAATTATATTAATTTA
* * *
96819721 ATATTAATATGAG-ATTAAATTTAATTTAATATTTATCTAGATAAAATTATATTAATTTA
1 ATATTAATATGAGAATTAAATTTAACTTAAAATTTATCTAAATAAAATTATATTAATTTA
96819780 ATATTAAT
1 ATATTAAT
96819788 TTGATTAATT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
59 48 0.79
61 13 0.21
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (60 bp):
ATATTAATATGAGAATTAAATTTAACTTAAAATTTATCTAAATAAAATTATATTAATTTA
Found at i:96819779 original size:31 final size:31
Alignment explanation
Indices: 96819682--96819784 Score: 88
Period size: 31 Copynumber: 3.4 Consensus size: 31
96819672 GATATTAAAT
* * * ** *
96819682 TTAACTTAAAATTTATCTAAATAGTATTTTA
1 TTAATTTAATATTTATCTAGATAAAATTATA
* * *
96819713 TTAATTTAATATTAATATGAGAT-TAA--AT-
1 TTAATTTAATATTTATCT-AGATAAAATTATA
96819741 TTAATTTAATATTTATCTAGATAAAATTATA
1 TTAATTTAATATTTATCTAGATAAAATTATA
96819772 TTAATTTAATATT
1 TTAATTTAATATT
96819785 AATTTGATTA
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
27 4 0.07
28 18 0.32
29 1 0.02
30 2 0.04
31 28 0.50
32 3 0.05
ACGTcount: A:0.44, C:0.03, G:0.04, T:0.50
Consensus pattern (31 bp):
TTAATTTAATATTTATCTAGATAAAATTATA
Found at i:96819811 original size:20 final size:20
Alignment explanation
Indices: 96819771--96819811 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
96819761 ATAAAATTAT
*
96819771 ATTAATTTAATATTAATTTG
1 ATTAATTTAATATTAAGTTG
96819791 ATTAATTCTAATATT-AGTTG
1 ATTAATT-TAATATTAAGTTG
96819811 A
1 A
96819812 ACTGTCTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (20 bp):
ATTAATTTAATATTAAGTTG
Found at i:96819994 original size:16 final size:16
Alignment explanation
Indices: 96819973--96820003 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96819963 GAACTTTAAA
*
96819973 GAAATTACTAAATTAT
1 GAAATTACGAAATTAT
96819989 GAAATTACGAAATTA
1 GAAATTACGAAATTA
96820004 CCCCATTGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.10, T:0.32
Consensus pattern (16 bp):
GAAATTACGAAATTAT
Found at i:96830262 original size:29 final size:28
Alignment explanation
Indices: 96830230--96830292 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
96830220 TTTGTTTTCC
* *
96830230 ATTTATTTTAATTTTTAATT-TATTTTGTA
1 ATTTATTTAAAATTTTAATTATA-TTT-TA
*
96830259 ATTT-TCTAAAATTTTAATTATATTTTA
1 ATTTATTTAAAATTTTAATTATATTTTA
96830286 ATTTATT
1 ATTTATT
96830293 AAGCCTAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
27 6 0.21
28 16 0.57
29 6 0.21
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (28 bp):
ATTTATTTAAAATTTTAATTATATTTTA
Found at i:96831659 original size:30 final size:29
Alignment explanation
Indices: 96831588--96831659 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
96831578 ACTTAATCAT
*
96831588 TTTTAGTCTCTATATTTTTAAATCTATTTA
1 TTTTAGTC-CTATATTTTTAAATCTATTAA
96831618 TTTTAGTTCCTATACTTTTTAAAAT-T-TTAAA
1 TTTTAG-TCCTATA-TTTTT-AAATCTATT-AA
96831649 TTTTAGTCCTA
1 TTTTAGTCCTA
96831660 ACCCACACAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
30 18 0.49
31 15 0.41
32 4 0.11
ACGTcount: A:0.28, C:0.11, G:0.04, T:0.57
Consensus pattern (29 bp):
TTTTAGTCCTATATTTTTAAATCTATTAA
Found at i:96832241 original size:54 final size:58
Alignment explanation
Indices: 96832120--96832243 Score: 134
Period size: 54 Copynumber: 2.2 Consensus size: 58
96832110 TTAGGACCTA
* * *
96832120 AACTTGGTAATTGTTCGCACATTAAAATTTGAACTTTTTTTATCTAAGTTAGTCTCTG
1 AACTTGGCAATTGTTCGCACATTAAAACTTGAACTTTTTTTATCTAAGTTACTCTCTG
** *
96832178 AA-TTCGGCAATTGTTC-CACATTGGAGCTTGAA-TTTTTTT-T-TAAGTTACTC-CATG
1 AACTT-GGCAATTGTTCGCACATTAAAACTTGAACTTTTTTTATCTAAGTTACTCTC-TG
96832232 AACTTGGCAATT
1 AACTTGGCAATT
96832244 ATTTTTAAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
53 1 0.02
54 20 0.35
55 3 0.05
56 7 0.12
57 14 0.25
58 12 0.21
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (58 bp):
AACTTGGCAATTGTTCGCACATTAAAACTTGAACTTTTTTTATCTAAGTTACTCTCTG
Found at i:96832797 original size:25 final size:25
Alignment explanation
Indices: 96832756--96832829 Score: 64
Period size: 25 Copynumber: 3.0 Consensus size: 25
96832746 AGTCTTTATA
*
96832756 TTTTTTTTGTACA-TTTAAATTTTAG
1 TTTTTTTT-TATATTTTAAATTTTAG
*
96832781 TTTTTTTTTATATTTTATGAAATTTAG
1 TTTTTTTTTATATTTTA--AATTTTAG
* *
96832808 --TCTTTTTATTTTTTAAATTTTA
1 TTTTTTTTTATATTTTAAATTTTA
96832830 AAATTTAGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
23 6 0.15
24 3 0.07
25 25 0.61
27 7 0.17
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (25 bp):
TTTTTTTTTATATTTTAAATTTTAG
Found at i:96841652 original size:88 final size:89
Alignment explanation
Indices: 96841498--96841678 Score: 235
Period size: 88 Copynumber: 2.0 Consensus size: 89
96841488 CTCCTATTTA
*
96841498 TTTTGCACTCAATTGGATACTTAAACTTTCAAAATGCATAAAAAATGCCTTCAAGCTTAAAAAAA
1 TTTTGCACTCAATTGGATACTTAAACTTTCAAAATGCATAAAAAATGCCTTCAAACTTAAAAAAA
96841563 AAAA-CAATTAAGCCCCTG-TTTTT
66 AAAAGCAATTAAGCCCC-GCTTTTT
* * * ****
96841586 TTTTGCACTCAATTGTATACTTAAA-TTGTCAAAATGCATAAAAAA-GAGCTTCAAATTTTTTCA
1 TTTTGCACTCAATTGGATACTTAAACTT-TCAAAATGCATAAAAAATG-CCTTCAAACTTAAAAA
96841649 AAAAAAGCAATTAAGCCCCGCTTTTT
64 AAAAAAGCAATTAAGCCCCGCTTTTT
96841675 TTTT
1 TTTT
96841679 CTTTTTTTTG
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
87 3 0.04
88 57 0.70
89 21 0.26
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.35
Consensus pattern (89 bp):
TTTTGCACTCAATTGGATACTTAAACTTTCAAAATGCATAAAAAATGCCTTCAAACTTAAAAAAA
AAAAGCAATTAAGCCCCGCTTTTT
Found at i:96841858 original size:9 final size:9
Alignment explanation
Indices: 96841822--96841916 Score: 79
Period size: 9 Copynumber: 10.4 Consensus size: 9
96841812 ATATGACAAA
96841822 AAAAATTAT
1 AAAAATTAT
96841831 AAAAA--AT
1 AAAAATTAT
*
96841838 AAAAATCAAT
1 AAAAAT-TAT
96841848 AAAAATTAT
1 AAAAATTAT
96841857 AAAAATTAT
1 AAAAATTAT
* *
96841866 TAAACTT-T
1 AAAAATTAT
*
96841874 AAAAAAATAT
1 -AAAAATTAT
*
96841884 AAAATTTTAT
1 AAAA-ATTAT
*
96841894 AAAATTTTAT
1 AAAA-ATTAT
96841904 AAAAATTAT
1 AAAAATTAT
96841913 AAAA
1 AAAA
96841917 TGCATAAAAA
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
7 7 0.10
8 1 0.01
9 37 0.52
10 26 0.37
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:96841858 original size:19 final size:19
Alignment explanation
Indices: 96841822--96841916 Score: 74
Period size: 19 Copynumber: 5.2 Consensus size: 19
96841812 ATATGACAAA
96841822 AAAAATT-ATAAAAA--AT
1 AAAAATTAATAAAAATTAT
*
96841838 AAAAATCAATAAAAATTAT
1 AAAAATTAATAAAAATTAT
* **
96841857 AAAAATTATTAAACTTTA-
1 AAAAATTAATAAAAATTAT
* *
96841875 AAAAAAT-ATAAAATTTTAT
1 AAAAATTAATAAAA-ATTAT
* *
96841894 AAAATTTTATAAAAATTAT
1 AAAAATTAATAAAAATTAT
96841913 AAAA
1 AAAA
96841917 TGCATAAAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
16 6 0.10
17 11 0.18
18 10 0.16
19 29 0.47
20 6 0.10
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTAATAAAAATTAT
Found at i:96841879 original size:28 final size:29
Alignment explanation
Indices: 96841820--96841917 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 29
96841810 ACATATGACA
* *
96841820 AAAAAAATTATAAAA-A--ATAAAA-ATC
1 AAAAAAATTATAAAATATTATAAAACTTT
*
96841845 AATAAAAATTATAAAA-ATTATTAAACTTT
1 AA-AAAAATTATAAAATATTATAAAACTTT
* *
96841874 AAAAAAA-TATAAAATTTTATAAAATTTT
1 AAAAAAATTATAAAATATTATAAAACTTT
*
96841902 ATAAAAATTATAAAAT
1 AAAAAAATTATAAAAT
96841918 GCATAAAAAG
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
25 2 0.03
26 14 0.23
27 7 0.12
28 26 0.43
29 11 0.18
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (29 bp):
AAAAAAATTATAAAATATTATAAAACTTT
Found at i:96841910 original size:11 final size:10
Alignment explanation
Indices: 96841881--96841917 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
96841871 TTTAAAAAAA
96841881 TATAAAATTT
1 TATAAAATTT
96841891 TATAAAATTT
1 TATAAAATTT
*
96841901 TATAAAA-AT
1 TATAAAATTT
96841910 TATAAAAT
1 TATAAAAT
96841918 GCATAAAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 8 0.32
10 17 0.68
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TATAAAATTT
Found at i:96842202 original size:19 final size:20
Alignment explanation
Indices: 96842180--96842219 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
96842170 TTTAAACTTG
96842180 ATAATCTTTTAC-AATTTTT
1 ATAATCTTTTACTAATTTTT
*
96842199 ATAATCTTTTTCTAATTTTT
1 ATAATCTTTTACTAATTTTT
96842219 A
1 A
96842220 ATAAAAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (20 bp):
ATAATCTTTTACTAATTTTT
Done.