Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 320 of 325
Found at i:96842252 original size:26 final size:27
Alignment explanation
Indices: 96842213--96842271 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
96842203 TCTTTTTCTA
*
96842213 ATTTTTAATAAAAA-TAAATATTTTTTT
1 ATTTTTAATAAAAATTAAATA-ATTTTT
* *
96842240 ATTTTT-ATTAAAATTTAATAATTTTT
1 ATTTTTAATAAAAATTAAATAATTTTT
96842266 ATTTTT
1 ATTTTT
96842272 TTTGTCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (27 bp):
ATTTTTAATAAAAATTAAATAATTTTT
Found at i:96842259 original size:27 final size:26
Alignment explanation
Indices: 96842213--96842271 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
96842203 TCTTTTTCTA
*
96842213 ATTTTTAATAAAAATAAATATTTTTTT
1 ATTTTTAATAAAAATAAATA-ATTTTT
* * *
96842240 ATTTTTATTAAAATTTAATAATTTTT
1 ATTTTTAATAAAAATAAATAATTTTT
96842266 ATTTTT
1 ATTTTT
96842272 TTTGTCAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (26 bp):
ATTTTTAATAAAAATAAATAATTTTT
Found at i:96842263 original size:28 final size:28
Alignment explanation
Indices: 96842199--96842285 Score: 77
Period size: 29 Copynumber: 3.0 Consensus size: 28
96842189 TACAATTTTT
* *
96842199 ATAATCTTTTTCTAATTTTTAATAAAAATAA
1 ATAAT-TTTTT-T-ATTTTTATTAAAATTAA
*
96842230 AT-ATTTTTTTATTTTTATTAAAATTTA
1 ATAATTTTTTTATTTTTATTAAAATTAA
* * *
96842257 ATAATTTTTATTTTTTTTGTCAAAATTAA
1 ATAATTTTT-TTATTTTTATTAAAATTAA
96842286 CAGTTAAAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
27 16 0.34
28 7 0.15
29 20 0.43
30 2 0.04
31 2 0.04
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.57
Consensus pattern (28 bp):
ATAATTTTTTTATTTTTATTAAAATTAA
Found at i:96844326 original size:20 final size:20
Alignment explanation
Indices: 96844301--96844340 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
96844291 AACTGCCCTG
96844301 TTCAATATCACTCAAACCAC
1 TTCAATATCACTCAAACCAC
96844321 TTCAATATCACTCAAACCAC
1 TTCAATATCACTCAAACCAC
96844341 CAATAAAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.35, G:0.00, T:0.25
Consensus pattern (20 bp):
TTCAATATCACTCAAACCAC
Found at i:96846742 original size:22 final size:20
Alignment explanation
Indices: 96846704--96846743 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
96846694 TTTGTCTCAG
*
96846704 TTGCATATATTTGCATTTTC
1 TTGCATATATTGGCATTTTC
96846724 TTGCATATATATGGCCATTT
1 TTGCATATAT-TGG-CATTT
96846744 ACAAGTCTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 2 0.12
22 5 0.29
ACGTcount: A:0.23, C:0.15, G:0.12, T:0.50
Consensus pattern (20 bp):
TTGCATATATTGGCATTTTC
Found at i:96849184 original size:36 final size:35
Alignment explanation
Indices: 96849112--96849184 Score: 85
Period size: 36 Copynumber: 2.0 Consensus size: 35
96849102 AAAATATATA
** *
96849112 TTAAAGTTTAGGGATTATGGGTTTAGGGGTTGGGGT
1 TTAAAGTTTAGGGATTATGGG-TTAAAGGTTAGGGT
96849148 TTAAAGTTTAGGGATTAGTGGG-TAAAGGTTAAGGGT
1 TTAAAGTTTAGGGATTA-TGGGTTAAAGGTT-AGGGT
96849184 T
1 T
96849185 ATGGATTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
35 6 0.19
36 22 0.69
37 4 0.12
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.37
Consensus pattern (35 bp):
TTAAAGTTTAGGGATTATGGGTTAAAGGTTAGGGT
Found at i:96849201 original size:22 final size:22
Alignment explanation
Indices: 96849176--96849230 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
96849166 TGGGTAAAGG
* *
96849176 TTAAGGGTTATGGATTATGGGT
1 TTAAGGGTTAAGGATTATAGGT
* *
96849198 TTAAGGATTAAGGGTTATAGGT
1 TTAAGGGTTAAGGATTATAGGT
*
96849220 TTAATGGTTAA
1 TTAAGGGTTAA
96849231 AGGGATAGGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.31, T:0.40
Consensus pattern (22 bp):
TTAAGGGTTAAGGATTATAGGT
Found at i:96849214 original size:29 final size:28
Alignment explanation
Indices: 96849159--96849233 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 28
96849149 TAAAGTTTAG
96849159 GGATTAGTGGGTAAAGGTTAAGGGTTAT
1 GGATTAGTGGGTAAAGGTTAAGGGTTAT
*
96849187 GGATTA-TGGGTTTAAGGATTAAGGGTTAT
1 GGATTAGTGGG-TAAAGG-TTAAGGGTTAT
* * *
96849216 AGGTTTAATGGTTAAAGG
1 -GGATTAGTGGGTAAAGG
96849234 GATAGGGGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 4 0.10
28 11 0.28
29 11 0.28
30 10 0.26
31 3 0.08
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.35
Consensus pattern (28 bp):
GGATTAGTGGGTAAAGGTTAAGGGTTAT
Found at i:96849223 original size:15 final size:15
Alignment explanation
Indices: 96849176--96849229 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
96849166 TGGGTAAAGG
96849176 TTAAGGGTTAT-GGA
1 TTAAGGGTTATAGGA
*
96849190 TTATGGGTT-TAAGGA
1 TTAAGGGTTAT-AGGA
*
96849205 TTAAGGGTTATAGGT
1 TTAAGGGTTATAGGA
*
96849220 TTAATGGTTA
1 TTAAGGGTTA
96849230 AAGGGATAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
13 1 0.03
14 8 0.24
15 23 0.70
16 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (15 bp):
TTAAGGGTTATAGGA
Found at i:96849258 original size:8 final size:7
Alignment explanation
Indices: 96849174--96849258 Score: 62
Period size: 7 Copynumber: 11.6 Consensus size: 7
96849164 AGTGGGTAAA
96849174 GGTTAAG
1 GGTTAAG
*
96849181 GGTTATG
1 GGTTAAG
* *
96849188 GATTATG
1 GGTTAAG
96849195 GGTTTAAG
1 GG-TTAAG
*
96849203 GATTAAG
1 GGTTAAG
96849210 GGTTATAG
1 GGTTA-AG
* *
96849218 GTTTAAT
1 GGTTAAG
96849225 GGTTAAAG
1 GGTT-AAG
* *
96849233 GGATAGG
1 GGTTAAG
96849240 GGTTAAG
1 GGTTAAG
96849247 GGTTAAG
1 GGTTAAG
96849254 AGGTT
1 -GGTT
96849259 TAATTAATGG
Statistics
Matches: 60, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
7 40 0.67
8 20 0.33
ACGTcount: A:0.28, C:0.00, G:0.38, T:0.34
Consensus pattern (7 bp):
GGTTAAG
Found at i:96849708 original size:26 final size:27
Alignment explanation
Indices: 96849635--96849709 Score: 109
Period size: 26 Copynumber: 2.9 Consensus size: 27
96849625 AATAATTTAA
*
96849635 AATTTTAAAGATTTCAAA-TTTAGAAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
96849661 AAATTTCAAGATTTCAAATTTTA-AAT
1 AATTTTCAAGATTTCAAATTTTAGAAT
*
96849687 AATTTTCAATATTTCAAATTTTA
1 AATTTTCAAGATTTCAAATTTTA
96849710 TCTAATTCTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 40 0.91
27 4 0.09
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.45
Consensus pattern (27 bp):
AATTTTCAAGATTTCAAATTTTAGAAT
Found at i:96849991 original size:41 final size:42
Alignment explanation
Indices: 96849903--96850004 Score: 145
Period size: 41 Copynumber: 2.4 Consensus size: 42
96849893 TGTCTCCAAG
*
96849903 GGAATTAGCGGCGTTTTTAAAAAAAAGCGCCGCTAAAAATAA
1 GGAATTAGCGGCGTTTTTAAAAAAAAGCACCGCTAAAAATAA
* *
96849945 GGAATTAGTGGCGTTTTT-AAAAGAAGCACCGCTAAAAAT-A
1 GGAATTAGCGGCGTTTTTAAAAAAAAGCACCGCTAAAAATAA
96849985 GAGAATTAGCGGCGCTTTTT
1 G-GAATTAGCGGCG-TTTTT
96850005 TTAAAACGTC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 30 0.56
42 22 0.41
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (42 bp):
GGAATTAGCGGCGTTTTTAAAAAAAAGCACCGCTAAAAATAA
Found at i:96852809 original size:241 final size:241
Alignment explanation
Indices: 96852380--96853265 Score: 1682
Period size: 241 Copynumber: 3.7 Consensus size: 241
96852370 AGTTATAAGC
* *
96852380 AATTAAAACAATAGCTGACCTTCTTTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
96852445 AGGCTGGAAACCTGACGGGTTGCCTTATATTGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
*
96852510 AACAACGCCACGTATGATGAATTTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTACCGAGCTC
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTACCGAGCTC
96852575 ATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAA
196 ATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAA
*
96852621 AATTACAACAATAGCTTACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
*
96852686 AGGTTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
96852751 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTACCGAGCTC
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTACCGAGCTC
96852816 ATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAA
196 ATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAA
96852862 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
96852927 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
* *
96852992 AACAACACCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTAAAAAAAGTTCTACCGAGCTC
131 AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTACCGAGCTC
96853057 ATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAA
196 ATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAA
*
96853103 AATTACAACAATAGCTTACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
1 AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
96853168 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
66 AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
*
96853233 AACAACGCCACGTACGATGAATCTTAAAAAATT
131 AACAACGCCACGTATGATGAATCTTAAAAAATT
96853266 ACTATATTCA
Statistics
Matches: 632, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 632 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (241 bp):
AATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTAAAGATTCAAAGTATAT
AGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATGGATCCTCCCTAGGTGT
AACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAAAAGTTCTACCGAGCTC
ATTTACTATTGAATATTTATTACCATGTAGCTTGCTTGTCCATTAA
Found at i:96853408 original size:9 final size:9
Alignment explanation
Indices: 96853385--96853497 Score: 100
Period size: 9 Copynumber: 12.2 Consensus size: 9
96853375 ATTGATCATT
*
96853385 ACTTAAATA
1 ACTTACATA
*
96853394 AATTACATA
1 ACTTACATA
96853403 ACTTACATA
1 ACTTACATA
* *
96853412 ACTCATATA
1 ACTTACATA
96853421 ACTTACATA
1 ACTTACATA
*
96853430 ATTTACATAACA
1 ACTTACAT---A
96853442 ACTTACATA
1 ACTTACATA
*
96853451 ACTCACATA
1 ACTTACATA
96853460 ACTTACATA
1 ACTTACATA
* *
96853469 ATTTATATA
1 ACTTACATA
* *
96853478 GCTCACATA
1 ACTTACATA
*
96853487 ACGTACATA
1 ACTTACATA
96853496 AC
1 AC
96853498 AACTTACACA
Statistics
Matches: 81, Mismatches: 20, Indels: 6
0.76 0.19 0.06
Matches are distributed among these distances:
9 73 0.90
12 8 0.10
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
ACTTACATA
Found at i:96853477 original size:57 final size:57
Alignment explanation
Indices: 96853398--96853510 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
96853388 TAAATAAATT
* ** *
96853398 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACTTACACAACTC
* * *
96853455 ACATAACTTACATAATTTATATAGCTCACATAACGTACATAACAACTTACACAACT
1 ACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACTTACACAACT
96853511 TAACTAATAC
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCATATAACTCACATAACGTACATAACAACTTACACAACTC
Found at i:96859613 original size:43 final size:43
Alignment explanation
Indices: 96859550--96859693 Score: 200
Period size: 43 Copynumber: 3.3 Consensus size: 43
96859540 AGCCATGATA
* ** *
96859550 TTTAGCGGTGCTTTTTCCACAAATGCCGCTAAAGTCCGTGACT
1 TTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGTCCGTGACT
* *
96859593 TTTAGCGGCGCTTTACCCACAAGCGCTGCTAAAAG-CCGTGACT
1 TTTAGCGGCGCTTTACCCACAAACGCCGCT-AAAGTCCGTGACT
* *
96859636 TTTAGCGGCACTTTTCCCACAAACGCCGCTAAAGTCCGTGACT
1 TTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGTCCGTGACT
96859679 TTTAGCGGCGCTTTA
1 TTTAGCGGCGCTTTA
96859694 GCAGCGTTTT
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 4 0.05
43 79 0.91
44 4 0.05
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGTCCGTGACT
Found at i:96863497 original size:47 final size:46
Alignment explanation
Indices: 96863427--96863592 Score: 153
Period size: 47 Copynumber: 3.7 Consensus size: 46
96863417 AAGTGATTTC
* * *
96863427 CGTATAAGACCATATTTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
96863473 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * * *
96863520 CGTGTAAGCCCATAGCTGGGTTATGGCATC-----GATATGTGATTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGA-TA
* * *
96863562 CGTGTAAGACCATAGCTGGGCTATGGCATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
96863593 ATATATAAAT
Statistics
Matches: 104, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
41 9 0.09
42 29 0.28
46 26 0.25
47 40 0.38
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:96863549 original size:46 final size:42
Alignment explanation
Indices: 96863478--96863677 Score: 181
Period size: 42 Copynumber: 4.7 Consensus size: 42
96863468 TGCTACTGTA
*
96863478 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGATATGGCATC-----GATATGTGATTACGTG
* *
96863524 TAAGCCCATAGCTGGGTTATGGCATCGATATGTGATTACGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATTACGTG
* * * * *
96863566 TAAGACCATAGCTGGGCTATGGCATCGATATATAAATATGTG
1 TAAGACCATAGCTGGGATATGGCATCGATATGTGATTACGTG
* * ** *
96863608 TAAGACCATAGCTAGGCTATGGCATC-ATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGATATGGCATCGA-TATGTGATTACGTG
* *
96863650 TAAGACCATAG-TTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGA-TATGGCATCGA
96863678 GAAAACGAAG
Statistics
Matches: 134, Mismatches: 16, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
41 14 0.10
42 96 0.72
43 1 0.01
46 23 0.17
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (42 bp):
TAAGACCATAGCTGGGATATGGCATCGATATGTGATTACGTG
Found at i:96863579 original size:42 final size:42
Alignment explanation
Indices: 96863509--96863677 Score: 198
Period size: 42 Copynumber: 4.0 Consensus size: 42
96863499 GCATCAGTGA
* * *
96863509 GATATGTG-ATTCGTGTAAGCCCATAGCTGGGTTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
*
96863550 GATATGTGATTACGTGTAAGACCATAGCTGGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
* * * *
96863592 GATATATAAATATGTGTAAGACCATAGCTAGGCTATGGCATC
1 GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
* * * **
96863634 -ATTATGTGAAGATGTGTAAGACCATAGTTGAACTATGGCATC
1 GA-TATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
96863676 GA
1 GA
96863678 GAAAACGAAG
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
41 9 0.08
42 99 0.91
43 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
GATATGTGAATACGTGTAAGACCATAGCTGGGCTATGGCATC
Found at i:96867388 original size:35 final size:35
Alignment explanation
Indices: 96867329--96867413 Score: 93
Period size: 35 Copynumber: 2.4 Consensus size: 35
96867319 AGTATATATC
* * **
96867329 AATAAAATTATTT-TGATTTGTATTTTTTTATTTAT
1 AATATAATTATTTATGATTTATATTTTACTA-TTAT
96867364 AATATAATTATTTAT-ATTTATATTTTACTATTAT
1 AATATAATTATTTATGATTTATATTTTACTATTAT
*
96867398 ATATATATTTATTTAT
1 A-ATATAATTATTTAT
96867414 TATTCAAGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
34 5 0.12
35 37 0.86
36 1 0.02
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (35 bp):
AATATAATTATTTATGATTTATATTTTACTATTAT
Found at i:96867414 original size:19 final size:19
Alignment explanation
Indices: 96867349--96867416 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
96867339 TTTTGATTTG
*
96867349 TATTTTTTTATT-TATAATA
1 TATTTATTTATTATAT-ATA
* *
96867368 TAATTATTTA-TATTTATA
1 TATTTATTTATTATATATA
*
96867386 T-TTTA-CTATTATATATA
1 TATTTATTTATTATATATA
96867403 TATTTATTTATTAT
1 TATTTATTTATTAT
96867417 TCAAGAACAT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
16 2 0.05
17 11 0.29
18 9 0.24
19 16 0.42
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (19 bp):
TATTTATTTATTATATATA
Found at i:96875272 original size:12 final size:12
Alignment explanation
Indices: 96875257--96875285 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
96875247 TTATTTAATA
96875257 CATTATAATATT
1 CATTATAATATT
96875269 CATTATAATATT
1 CATTATAATATT
96875281 CATTA
1 CATTA
96875286 CAAGTACAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (12 bp):
CATTATAATATT
Found at i:96880159 original size:15 final size:15
Alignment explanation
Indices: 96880139--96880172 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
96880129 ATTTGGGATG
96880139 AAAATAAAAA-AAATA
1 AAAATAAAAATAAA-A
96880154 AAAATAAAAATAAAA
1 AAAATAAAAATAAAA
96880169 AAAA
1 AAAA
96880173 CATTCTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.83
16 3 0.17
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAATAAAAATAAAA
Found at i:96889578 original size:3 final size:3
Alignment explanation
Indices: 96889570--96889611 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
96889560 AAGGGAAAAT
* * *
96889570 ATA ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
96889612 AGAGGCGTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
2 1 0.03
3 31 0.97
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:96889990 original size:3 final size:3
Alignment explanation
Indices: 96889984--96890019 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
96889974 AACAACAATT
*
96889984 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
96890020 GATTTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:96891274 original size:12 final size:12
Alignment explanation
Indices: 96891257--96891288 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
96891247 GAAGGCAGAA
*
96891257 GGTATGGGCGAT
1 GGTATGGGCAAT
96891269 GGTATGGGCAAT
1 GGTATGGGCAAT
96891281 GGTATGGG
1 GGTATGGG
96891289 ACGCCTGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.19, C:0.06, G:0.50, T:0.25
Consensus pattern (12 bp):
GGTATGGGCAAT
Found at i:96891727 original size:44 final size:45
Alignment explanation
Indices: 96891640--96891727 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 45
96891630 GATATCTGCT
* *
96891640 ATCTTTGATATGTTCCCTGTCTAATACAGAGACGCCAAATCTGTC
1 ATCTTTGATATGCTCCCTGTCTAACACAGAGACGCCAAATCTGTC
* *
96891685 ATCTTTGATCTGCTCTCTGTC-AACACAGAGACGCCAAATCTGT
1 ATCTTTGATATGCTCCCTGTCTAACACAGAGACGCCAAATCTGT
96891728 TTTGATCTAC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 21 0.54
45 18 0.46
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
ATCTTTGATATGCTCCCTGTCTAACACAGAGACGCCAAATCTGTC
Found at i:96891755 original size:40 final size:42
Alignment explanation
Indices: 96891656--96891740 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 42
96891646 GATATGTTCC
* *
96891656 CTGTCTAATACAGAGACGCCAAATCTGTCATCTTTGATCTGCTCT
1 CTGTC-AACACAGAGACGCCAAATCTG--ATCTTTGATCTACTCT
96891701 CTGTCAACACAGAGACGCCAAATCTG-T-TTTGATCTACTCT
1 CTGTCAACACAGAGACGCCAAATCTGATCTTTGATCTACTCT
96891741 ACTGCATTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
40 12 0.32
41 1 0.03
44 20 0.53
45 5 0.13
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (42 bp):
CTGTCAACACAGAGACGCCAAATCTGATCTTTGATCTACTCT
Found at i:96891896 original size:44 final size:44
Alignment explanation
Indices: 96891827--96891949 Score: 194
Period size: 44 Copynumber: 2.8 Consensus size: 44
96891817 TATCTTCAGT
* *
96891827 CTGCTCTTCTGCAACTTCAGGGAGATAAGA-CTTGTAACTTCGAC
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATC-TGTAACTTCGAC
* *
96891871 CTGTTCTACTGCAACTTCAGAGAGATAAGATCTGTAATTTCGAC
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTCGAC
96891915 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
1 CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGT
96891950 TTTGATCTTC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 72 0.99
45 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
CTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTAACTTCGAC
Found at i:96891974 original size:42 final size:43
Alignment explanation
Indices: 96891839--96891975 Score: 127
Period size: 44 Copynumber: 3.2 Consensus size: 43
96891829 GCTCTTCTGC
* * * * *
96891839 AACTTCAGGGAGATAAGA-CTTGTAACTTCGACCTGTTCTACTGC
1 AACTTCAGAGAGATAAGATC-TGT-ATTTCGACCTGCTCCACTGA
* *
96891883 AACTTCAGAGAGATAAGATCTGTAATTTCGACCTGCTCTACTGC
1 AACTTCAGAGAGATAAGATCTGT-ATTTCGACCTGCTCCACTGA
* * *
96891927 AACTTCAGAGAGATAAGATCTGT-TTT-GATCTTCTTCCGCTGA
1 AACTTCAGAGAGATAAGATCTGTATTTCGACCTGC-TCCACTGA
96891969 AACTTCA
1 AACTTCA
96891976 AAGAAATCTG
Statistics
Matches: 83, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
41 5 0.06
42 15 0.18
44 62 0.75
45 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (43 bp):
AACTTCAGAGAGATAAGATCTGTATTTCGACCTGCTCCACTGA
Found at i:96892054 original size:68 final size:68
Alignment explanation
Indices: 96891965--96892118 Score: 211
Period size: 68 Copynumber: 2.3 Consensus size: 68
96891955 TCTTCTTCCG
* * * *
96891965 CTGAAACTTCAAAGAAATCTGCTGTGGCTTTTAGCCGCTCCAACGCTATTTC-AGGAAGAAGAGA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAAGG-AGAAGAGA
*
96892029 TCTA
65 TCCA
* * *
96892033 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCATTCTAGCGCCATTTCAAGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAAGGAGAAGAGAT
*
96892098 CCG
66 CCA
96892101 CTGAAACTTCAAGGAGAT
1 CTGAAACTTCAAGGAGAT
96892119 ACGAATAGTG
Statistics
Matches: 76, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
68 73 0.96
69 3 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAAGGAGAAGAGAT
CCA
Found at i:96892253 original size:44 final size:44
Alignment explanation
Indices: 96892188--96892340 Score: 152
Period size: 44 Copynumber: 3.5 Consensus size: 44
96892178 CAGCCTGGTA
*
96892188 CCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGTCCATCGTCTTCGATCTGTTT
* ** ** * * *
96892232 CCCTACTGCTTA-GGGTGTTAAGATCTGTAAAT-TTAG-CCTGTTA
1 CCCTACTGCTTAGGGGT-TTAAGGTCCAT-CGTCTTCGATCTGTTT
*
96892275 CCTTACTGCTTAGGGGTTTAAGGTCCATCG-CATTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGGTCCATCGTC-TTCGATCTGTTT
*
96892319 CCCTACTGCTTAGGGGGTTAAG
1 CCCTACTGCTTAGGGGTTTAAG
96892341 ATCTGTAAAT
Statistics
Matches: 83, Mismatches: 20, Indels: 12
0.72 0.17 0.10
Matches are distributed among these distances:
43 31 0.37
44 51 0.61
45 1 0.01
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.36
Consensus pattern (44 bp):
CCCTACTGCTTAGGGGTTTAAGGTCCATCGTCTTCGATCTGTTT
Found at i:96892287 original size:43 final size:42
Alignment explanation
Indices: 96892226--96892549 Score: 224
Period size: 43 Copynumber: 7.5 Consensus size: 42
96892216 CGTCTTCGAT
*
96892226 CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGC
* * ** ** * *
96892269 CTGTTACCTTACTGCTTAGGGGTTTAAGGTCCATCGCA-TTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGT-AAATTTAG-C
*
96892313 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* * * * * * *
96892356 CTGTTACCCTACTGCTTATAGAGATAAG-GCTTGTGAATTCAAC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATC-TGTAAATTTAGC
* ** *
96892399 CTGTTACCCTACTGCTTAGGGGTTTAAGGTCTGTAAATTCGGT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAATTTAGC
* ** ** * *
96892442 TTGTTACCCTACTGCTTAAGGGGTTAAAGCCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTT-AGGGGTT-AAGATCTGTAAAT-TTAG-C
* * *
96892486 CTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
96892529 CTGTTACCCTACTGCTTAGGG
1 CTGTTACCCTACTGCTTAGGG
96892550 AGATAAGGCT
Statistics
Matches: 213, Mismatches: 53, Indels: 31
0.72 0.18 0.10
Matches are distributed among these distances:
42 8 0.04
43 136 0.64
44 64 0.30
45 5 0.02
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.36
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
Found at i:96892288 original size:87 final size:86
Alignment explanation
Indices: 96892169--96892558 Score: 460
Period size: 87 Copynumber: 4.5 Consensus size: 86
96892159 AGAAAAAAGT
* *
96892169 TGTAATTTTCAGCCTGGTACCCTACTGCTTAGGGGTTTAAGGCCCATCGTCTTCGATCTGTTTCC
1 TGTAAATTT-AGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCATCGTCTTCGATCTGTTTCC
*
96892234 CTACTGCTTAGGGTGTTAAGATC
64 CTACTGCTTAGGGGGTTAAGATC
* *
96892257 TGTAAATTTAGCCTGTTACCTTACTGCTTAGGGGTTTAAGGTCCATCG-CATTCGATCTGTTTCC
1 TGTAAATTTAGCCTGTTACCCTACTGCTTAGGGG-TTAAGGCCCATCGTC-TTCGATCTGTTTCC
96892321 CTACTGCTTAGGGGGTTAAGATC
64 CTACTGCTTAGGGGGTTAAGATC
* * * *** ** * * *
96892344 TGTAAATTTAGCCTGTTACCCTACTGCTTATAGAGATAAGGCTTGT-GAATTCAACCTGTTACCC
1 TGTAAATTTAGCCTGTTACCCTACTGCTTA-GGGGTTAAGGCCCATCGTCTTCGATCTGTTTCCC
* *
96892408 TACTGCTTAGGGGTTTAAGGTC
65 TACTGCTTAGGGGGTTAAGATC
** ** * *
96892430 TGTAAATTCGGTTTGTTACCCTACTGCTTAAGGGGTTAAAGCCCTTCGTCTTCGATCTGTTTCCC
1 TGTAAATTTAGCCTGTTACCCTACTGCTT-AGGGGTTAAGGCCCATCGTCTTCGATCTGTTTCCC
*
96892495 TACTGCTTAGGGGGTTAAGATT
65 TACTGCTTAGGGGGTTAAGATC
* *
96892517 TGTAAATTCAGCCTGTTACCCTACTGCTTAGGGAGATAAGGC
1 TGTAAATTTAGCCTGTTACCCTACTGCTTAGGG-GTTAAGGC
96892559 TTGTGAATTC
Statistics
Matches: 253, Mismatches: 43, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
86 71 0.28
87 172 0.68
88 10 0.04
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (86 bp):
TGTAAATTTAGCCTGTTACCCTACTGCTTAGGGGTTAAGGCCCATCGTCTTCGATCTGTTTCCCT
ACTGCTTAGGGGGTTAAGATC
Found at i:96892486 original size:173 final size:173
Alignment explanation
Indices: 96892226--96892569 Score: 514
Period size: 173 Copynumber: 2.0 Consensus size: 173
96892216 CGTCTTCGAT
* * *
96892226 CTGTTTCCCTACTGCTTAGGGTGTTAAGATCTGTAAATTTAGCCTGTTACCTTACTGCTTAGGGG
1 CTGTTACCCTACTGCTTAGGGTGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
* * *
96892291 TTTAAGGTCCATCGCATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
66 TTTAAAGCCCATCGCATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
*
96892356 CTGTTACCCTACTGCTTATAGAGATAAGGCTTGTGAATTCAAC
131 CTGTTACCCTACTGCTTAGAGAGATAAGGCTTGTGAATTCAAC
* * **
96892399 CTGTTACCCTACTGCTTAGGG-GTTTAAGGTCTGTAAATTCGGTTTGTTACCCTACTGCTTAAGG
1 CTGTTACCCTACTGCTTAGGGTG-TTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTT-AGG
* *
96892463 GG-TTAAAGCCCTTCGTC-TTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATTTGTAAATTC
64 GGTTTAAAGCCCATCG-CATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTC
*
96892526 AGCCTGTTACCCTACTGCTTAGGGAGATAAGGCTTGTGAATTCA
128 AGCCTGTTACCCTACTGCTTAGAGAGATAAGGCTTGTGAATTCA
96892570 CCAATTCCAC
Statistics
Matches: 154, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
172 1 0.01
173 147 0.95
174 6 0.04
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.36
Consensus pattern (173 bp):
CTGTTACCCTACTGCTTAGGGTGTTAAGATCTGTAAATTCAGCCTGTTACCCTACTGCTTAGGGG
TTTAAAGCCCATCGCATTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
CTGTTACCCTACTGCTTAGAGAGATAAGGCTTGTGAATTCAAC
Found at i:96892791 original size:67 final size:66
Alignment explanation
Indices: 96892639--96892832 Score: 250
Period size: 67 Copynumber: 3.0 Consensus size: 66
96892629 ATGTTTATGC
* * * * * ** *
96892639 CAAATAATTAGAACT-CTATGATTGAAATGAATCAAATGTTCCTAACTA-A-ATGTAATGCTTAT
1 CAAATAATTAGGA-TGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGT
96892701 GT
65 GT
* *
96892703 CAAATAATTAGGATGCCATGATCAAAATGAATCAAATGCTCCTAACTAGATGTTGTTATGAATGT
1 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATG-TGTTATGAATGT
96892768 GT
65 GT
*
96892770 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAATTAGATGTGTTATGAATG
1 CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATG
96892833 ACATATGAAT
Statistics
Matches: 113, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
63 1 0.01
64 41 0.36
65 1 0.01
66 11 0.10
67 59 0.52
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.32
Consensus pattern (66 bp):
CAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAATGTG
T
Found at i:96900047 original size:18 final size:18
Alignment explanation
Indices: 96900013--96900047 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
96900003 ATAATATTAA
* *
96900013 TTAATAAAATATTATTTC
1 TTAATAAAAAATCATTTC
96900031 TTAATAAAAAATCATTT
1 TTAATAAAAAATCATTT
96900048 AAAAGCCATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.46
Consensus pattern (18 bp):
TTAATAAAAAATCATTTC
Found at i:96903784 original size:3 final size:3
Alignment explanation
Indices: 96903776--96903804 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
96903766 CAATAATGCC
96903776 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
96903805 AGACCCCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31
Consensus pattern (3 bp):
CAT
Found at i:96904900 original size:28 final size:28
Alignment explanation
Indices: 96904868--96904924 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
96904858 TTACCATTAC
96904868 ATCAACAATAATTCTTATATGAATTTTA
1 ATCAACAATAATTCTTATATGAATTTTA
96904896 ATCAACAATAATTCTTATATGAATTTTA
1 ATCAACAATAATTCTTATATGAATTTTA
96904924 A
1 A
96904925 AAAATTGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.42
Consensus pattern (28 bp):
ATCAACAATAATTCTTATATGAATTTTA
Found at i:96907916 original size:19 final size:19
Alignment explanation
Indices: 96907877--96907933 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
96907867 ATTTAAAAAG
*
96907877 TTAT-AAAAATCAGAAAA-A
1 TTATAAAAAATTA-AAAATA
*
96907895 TTATAAAAAATTATAAATA
1 TTATAAAAAATTAAAAATA
* *
96907914 TTATCAAATATTAAAAATA
1 TTATAAAAAATTAAAAATA
96907933 T
1 T
96907934 GAAAACTGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
18 7 0.22
19 25 0.78
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (19 bp):
TTATAAAAAATTAAAAATA
Found at i:96907984 original size:10 final size:9
Alignment explanation
Indices: 96907870--96907983 Score: 54
Period size: 9 Copynumber: 12.3 Consensus size: 9
96907860 AAAAATGATT
96907870 TAAAAAGTTA
1 TAAAAA-TTA
*
96907880 TAAAAATCA
1 TAAAAATTA
*
96907889 GAAAAATTA
1 TAAAAATTA
96907898 TAAAAAATTA
1 T-AAAAATTA
*
96907908 TAAATATTA
1 TAAAAATTA
*
96907917 T-CAAA-TA
1 TAAAAATTA
96907924 TTAAAAA-TA
1 -TAAAAATTA
* *
96907933 TGAAAACTGA
1 T-AAAAATTA
* *
96907943 TATCAACTTA
1 TA-AAAATTA
*
96907953 TAAAAGTTA
1 TAAAAATTA
* *
96907962 TAAAAAATC
1 TAAAAATTA
96907971 TAATAAATTA
1 TAA-AAATTA
96907981 TAA
1 TAA
96907984 TTTTTATAAA
Statistics
Matches: 78, Mismatches: 19, Indels: 14
0.70 0.17 0.13
Matches are distributed among these distances:
7 2 0.03
8 4 0.05
9 41 0.53
10 31 0.40
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (9 bp):
TAAAAATTA
Found at i:96908023 original size:30 final size:31
Alignment explanation
Indices: 96907977--96908035 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
96907967 AATCTAATAA
* *
96907977 ATTATAATTTTTATAAAAT-TATTAAAACAT
1 ATTAAAATTTTCATAAAATCTATTAAAACAT
96908007 ATTAAAATTTTCATAAAATCGTATTAAAA
1 ATTAAAATTTTCATAAAATC-TATTAAAA
96908036 TTCTAGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 17 0.68
32 8 0.32
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (31 bp):
ATTAAAATTTTCATAAAATCTATTAAAACAT
Found at i:96910107 original size:9 final size:9
Alignment explanation
Indices: 96910095--96910153 Score: 91
Period size: 9 Copynumber: 6.6 Consensus size: 9
96910085 AAAAGTATAA
96910095 AATTAACCG
1 AATTAACCG
96910104 AATTAACCG
1 AATTAACCG
* *
96910113 AATTACCCA
1 AATTAACCG
*
96910122 AATTAATCG
1 AATTAACCG
96910131 AATTAACCG
1 AATTAACCG
96910140 AATTAACCG
1 AATTAACCG
96910149 AATTA
1 AATTA
96910154 TTTGTATAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 44 1.00
ACGTcount: A:0.46, C:0.20, G:0.08, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:96910188 original size:5 final size:6
Alignment explanation
Indices: 96910173--96910213 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
96910163 AATTATATGT
*
96910173 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
96910214 ATTAAGTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:96910254 original size:13 final size:13
Alignment explanation
Indices: 96910238--96910262 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
96910228 AATTTTTATG
96910238 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
96910251 ATTGGGTTGGGT
1 ATTGGGTTGGGT
96910263 TGGGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:96910262 original size:18 final size:18
Alignment explanation
Indices: 96910239--96910276 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
96910229 ATTTTTATGA
96910239 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGGTAATTGGG
*
96910257 TTGGGTTGGGTACTTGGG
1 TTGGGTTGGGTAATTGGG
96910275 TT
1 TT
96910277 AATATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.03, G:0.47, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTAATTGGG
Found at i:96910633 original size:20 final size:20
Alignment explanation
Indices: 96910592--96910629 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
96910582 TAAAATTATT
*
96910592 AAAATTATAATTAAATAATA
1 AAAATTATAATTAAAAAATA
96910612 AAAATTATAA-TAAAAAAT
1 AAAATTATAATTAAAAAAT
96910630 TAAAGCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAATTATAATTAAAAAATA
Found at i:96911719 original size:17 final size:15
Alignment explanation
Indices: 96911681--96911720 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
96911671 TTAAAAATAA
96911681 TAAAAAATATAAATT
1 TAAAAAATATAAATT
*
96911696 TTAAAAATATAATATT
1 TAAAAAATATAA-ATT
96911712 TAATAAAAT
1 TAA-AAAAT
96911721 TATATAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 11 0.52
16 5 0.24
17 5 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAAAAATATAAATT
Found at i:96912387 original size:2 final size:2
Alignment explanation
Indices: 96912380--96912414 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
96912370 GGTCATTTCC
96912380 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96912415 TACCATTTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:96913934 original size:44 final size:45
Alignment explanation
Indices: 96913839--96913972 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
96913829 ACAGGACAGA
* *
96913839 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * *
96913885 GCAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
96913929 ACAGGAATAATTCATGTAAGTCCATGTCAAAGATATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
96913973 CAGGATATTG
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
44 35 0.48
45 1 0.01
46 37 0.51
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:96916682 original size:47 final size:47
Alignment explanation
Indices: 96916573--96916683 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
96916563 CCGGGATAAG
* *
96916573 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
96916620 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
96916667 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
96916684 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:96925235 original size:47 final size:47
Alignment explanation
Indices: 96925166--96925293 Score: 256
Period size: 47 Copynumber: 2.7 Consensus size: 47
96925156 CAATCTCATT
96925166 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATTATATCTAACCGC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATTATATCTAACCGC
96925213 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATTATATCTAACCGC
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATTATATCTAACCGC
96925260 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
1 GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAAT
96925294 AGTACTGTAC
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 81 1.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (47 bp):
GGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATTATATCTAACCGC
Found at i:96925767 original size:2 final size:2
Alignment explanation
Indices: 96925760--96925795 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
96925750 TACTTCAAAA
96925760 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96925796 TCGACCTTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:96927525 original size:14 final size:14
Alignment explanation
Indices: 96927506--96927532 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
96927496 AAGATACGAT
96927506 ACTTTCACATATAC
1 ACTTTCACATATAC
96927520 ACTTTCACATATA
1 ACTTTCACATATA
96927533 ATAAGCATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (14 bp):
ACTTTCACATATAC
Found at i:96930140 original size:6 final size:6
Alignment explanation
Indices: 96930129--96930160 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
96930119 TAATTGAGTA
96930129 TGAAAT TGAAAT TGAAAT TGAAAT TGAAAT TG
1 TGAAAT TGAAAT TGAAAT TGAAAT TGAAAT TG
96930161 GTCCTACATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (6 bp):
TGAAAT
Found at i:96930328 original size:21 final size:21
Alignment explanation
Indices: 96930290--96930329 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
96930280 AAATTAAAAT
* * *
96930290 AAATATTTTTTAATAAATTGA
1 AAATATATTTAAAAAAATTGA
96930311 AAATATATTTAAAAAAATT
1 AAATATATTTAAAAAAATT
96930330 TATATTCAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
AAATATATTTAAAAAAATTGA
Found at i:96930792 original size:80 final size:80
Alignment explanation
Indices: 96930659--96930820 Score: 288
Period size: 80 Copynumber: 2.0 Consensus size: 80
96930649 TACTATATCT
*
96930659 AGAAAAAGAGTAGTAAGAAAAAGGCAAAGTGAATGAACAAAAAGTAAGGTCAGCCGCAATAGAGA
1 AGAAAAAGAGTAGTAAGAAAAAGGCAAAATGAATGAACAAAAAGTAAGGTCAGCCGCAATAGAGA
96930724 GTCGAAACGTAAATG
66 GTCGAAACGTAAATG
* *
96930739 AGAAAAAGAGTAGTAAGAAAAAGGTAAAATGAATGAACAGAAAGTAAGGTCAGCCGCAATAGAGA
1 AGAAAAAGAGTAGTAAGAAAAAGGCAAAATGAATGAACAAAAAGTAAGGTCAGCCGCAATAGAGA
*
96930804 GTCGAAACGTGAATG
66 GTCGAAACGTAAATG
96930819 AG
1 AG
96930821 TGAGTGGGAT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.51, C:0.09, G:0.27, T:0.13
Consensus pattern (80 bp):
AGAAAAAGAGTAGTAAGAAAAAGGCAAAATGAATGAACAAAAAGTAAGGTCAGCCGCAATAGAGA
GTCGAAACGTAAATG
Found at i:96933520 original size:15 final size:15
Alignment explanation
Indices: 96933500--96933529 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
96933490 TGACAGGCCG
96933500 ATCCAATAGATTAAT
1 ATCCAATAGATTAAT
*
96933515 ATCCAATTGATTAAT
1 ATCCAATAGATTAAT
96933530 CTTTGAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (15 bp):
ATCCAATAGATTAAT
Found at i:96933977 original size:21 final size:21
Alignment explanation
Indices: 96933951--96933991 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
96933941 GAACCATGAT
96933951 CAAAGTTCATGTATATAATTA
1 CAAAGTTCATGTATATAATTA
*
96933972 CAAAGTTCGTGTATATAATT
1 CAAAGTTCATGTATATAATT
96933992 GCATATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
CAAAGTTCATGTATATAATTA
Found at i:96934379 original size:30 final size:30
Alignment explanation
Indices: 96934303--96934381 Score: 81
Period size: 30 Copynumber: 2.6 Consensus size: 30
96934293 TAGGGTCTAA
*
96934303 TAAAATTTTTAAAAATCTTAAGGGTTTAAAAT
1 TAAAATTTTTAAAAAT-TTAAGGGATT-AAAT
* **
96934335 GAGGATTTTT-AAAATTTAAGGGATT-AAT
1 TAAAATTTTTAAAAATTTAAGGGATTAAAT
96934363 TAAAATTTTCTAAAAATTT
1 TAAAATTTT-TAAAAATTT
96934382 CAATGGAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
28 9 0.24
29 1 0.03
30 16 0.42
31 5 0.13
32 7 0.18
ACGTcount: A:0.44, C:0.03, G:0.11, T:0.42
Consensus pattern (30 bp):
TAAAATTTTTAAAAATTTAAGGGATTAAAT
Found at i:96935727 original size:21 final size:19
Alignment explanation
Indices: 96935683--96935727 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
96935673 ATCATAATAT
96935683 CTTATAAATATTTTAATTA
1 CTTATAAATATTTTAATTA
* *
96935702 ATTATAAAATCATTTTTATTA
1 CTTAT-AAAT-ATTTTAATTA
96935723 CTTAT
1 CTTAT
96935728 TATACTAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 4 0.19
20 4 0.19
21 13 0.62
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (19 bp):
CTTATAAATATTTTAATTA
Found at i:96936063 original size:18 final size:18
Alignment explanation
Indices: 96936019--96936063 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
96936009 AAATTTATAT
96936019 ATTTTAAAAAAAATTAAA
1 ATTTTAAAAAAAATTAAA
*
96936037 A-ATTAAAAAAAAGTTAAA
1 ATTTTAAAAAAAA-TTAAA
96936055 ATTTTAAAA
1 ATTTTAAAA
96936064 TAATTTTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 10 0.43
18 7 0.30
19 6 0.26
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
ATTTTAAAAAAAATTAAA
Found at i:96936068 original size:11 final size:11
Alignment explanation
Indices: 96936054--96936078 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96936044 AAAAAGTTAA
96936054 AATTTTAAAAT
1 AATTTTAAAAT
96936065 AATTTTAAAAT
1 AATTTTAAAAT
96936076 AAT
1 AAT
96936079 AATTCTGGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
AATTTTAAAAT
Found at i:96936860 original size:19 final size:18
Alignment explanation
Indices: 96936815--96936861 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
96936805 GGTTTTAAAA
*
96936815 TTAT-TATTTAAATTTTT
1 TTATATATTTTAATTTTT
* *
96936832 TTAAAAATTTTAATTTTCT
1 TTATATATTTTAATTTT-T
96936851 TTATATATTTT
1 TTATATATTTT
96936862 TTAAATTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 3 0.13
18 10 0.43
19 10 0.43
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (18 bp):
TTATATATTTTAATTTTT
Found at i:96936865 original size:21 final size:21
Alignment explanation
Indices: 96936821--96936883 Score: 69
Period size: 22 Copynumber: 3.1 Consensus size: 21
96936811 AAAATTATTA
**
96936821 TTTAAATTTT-TTTA-AAAAT
1 TTTAAATTTTCTTTATAATTT
96936840 TTT-AATTTTCTTTATATATTT
1 TTTAAATTTTCTTTATA-ATTT
*
96936861 TTTAAATTTTTTTTATAATTT
1 TTTAAATTTTCTTTATAATTT
96936882 TT
1 TT
96936884 ATTAAAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 6 0.16
19 7 0.19
20 1 0.03
21 11 0.30
22 12 0.32
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (21 bp):
TTTAAATTTTCTTTATAATTT
Found at i:96936872 original size:11 final size:11
Alignment explanation
Indices: 96936839--96936889 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
96936829 TTTTTAAAAA
96936839 TTTT-AATTTT
1 TTTTAAATTTT
* * *
96936849 CTTTATATATT
1 TTTTAAATTTT
96936860 TTTTAAATTTT
1 TTTTAAATTTT
96936871 TTTTATAATTTT
1 TTTTA-AATTTT
*
96936883 TATTAAA
1 TTTTAAA
96936890 AAATGATGAA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
10 3 0.09
11 19 0.59
12 10 0.31
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (11 bp):
TTTTAAATTTT
Found at i:96945436 original size:39 final size:39
Alignment explanation
Indices: 96945382--96945460 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
96945372 GATCCTTCTT
96945382 GTGGTGCCCTTCAATAGATAAGTTGTCAGCAGCTTGCAA
1 GTGGTGCCCTTCAATAGATAAGTTGTCAGCAGCTTGCAA
96945421 GTGGTGCCCTTCAATAGATAAGTTGTCAGCAGCTTGCAA
1 GTGGTGCCCTTCAATAGATAAGTTGTCAGCAGCTTGCAA
96945460 G
1 G
96945461 ACAGAGGTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
GTGGTGCCCTTCAATAGATAAGTTGTCAGCAGCTTGCAA
Found at i:96945946 original size:7 final size:7
Alignment explanation
Indices: 96945930--96945973 Score: 70
Period size: 7 Copynumber: 6.3 Consensus size: 7
96945920 GGGAAAGGTG
*
96945930 GGTCTTT
1 GGTCTAT
96945937 GGTCTAT
1 GGTCTAT
96945944 GGTCTAT
1 GGTCTAT
96945951 GGTCTAT
1 GGTCTAT
96945958 GGTCTAT
1 GGTCTAT
*
96945965 GGTATAT
1 GGTCTAT
96945972 GG
1 GG
96945974 AAGTGGAGTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.14, C:0.11, G:0.32, T:0.43
Consensus pattern (7 bp):
GGTCTAT
Found at i:96948926 original size:217 final size:217
Alignment explanation
Indices: 96948520--96948949 Score: 648
Period size: 217 Copynumber: 2.0 Consensus size: 217
96948510 AGACCTTCCG
* * *
96948520 TAATAATTATTAACTTCTTCAATAAGTTAAGTATTTACCTCCCTTTACTCGTTCTTATTTCGGAA
1 TAATAATTATTAACTTCTTCAATAAGTTAAGTATTTACATCCCTTTACTCGTTCTCATTTCAGAA
* * ** *
96948585 ACCTCTCGATTGAATTTAGTCTGAGAATCGAATTTTTCAACGCTAATGAAAAATAGATCGCCTTC
66 ACCTCTCGATTAAATTTAGCCCAAGAATCGAATTTTTCAACGCTAAAGAAAAATAGATCGCCTTC
* *
96948650 GTACCTATTTTTCCCAACAAGGTCATGTATGACAAGTGTATTGAGGGCAACTCCCACACTTTTAT
131 GTACCTATTTTTCCCAACAAGGTCATGTATGACAAATGTATTGAGGGCAACTACCACACTTTTAT
*
96948715 AGCTTTAAACCTCTTCAAGAAA
196 AGCTTTAAACATCTTCAAGAAA
* *
96948737 TAATAATTATTAACTTC-TCTAATAAGTTAAGTATTTACATCCCTTTGCTCGTTCTCATTTTAGA
1 TAATAATTATTAACTTCTTC-AATAAGTTAAGTATTTACATCCCTTTACTCGTTCTCATTTCAGA
* * *
96948801 AACCTCTCGATTAAATTTGGCCCAAGAATCGGATTTTTCAACGCTAAAGAAAAATAGATTGCCTT
65 AACCTCTCGATTAAATTTAGCCCAAGAATCGAATTTTTCAACGCTAAAGAAAAATAGATCGCCTT
* * * *
96948866 CTTACTTA-TTTTCCCAACAAGGTCATGTATGACAAATGTATTGAGGGGTACCTACCACACTTTT
130 CGTACCTATTTTTCCCAACAAGGTCATGTATGACAAATGTATTGA-GGGCAACTACCACACTTTT
96948930 ATAGCTTTAAACATCTTCAA
194 ATAGCTTTAAACATCTTCAA
96948950 CAAAGCTATC
Statistics
Matches: 191, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
216 37 0.19
217 154 0.81
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (217 bp):
TAATAATTATTAACTTCTTCAATAAGTTAAGTATTTACATCCCTTTACTCGTTCTCATTTCAGAA
ACCTCTCGATTAAATTTAGCCCAAGAATCGAATTTTTCAACGCTAAAGAAAAATAGATCGCCTTC
GTACCTATTTTTCCCAACAAGGTCATGTATGACAAATGTATTGAGGGCAACTACCACACTTTTAT
AGCTTTAAACATCTTCAAGAAA
Found at i:96952244 original size:20 final size:22
Alignment explanation
Indices: 96952214--96952261 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
96952204 TAAATATTTC
96952214 TAAAAACCTTTATTTTAAAT-A
1 TAAAAACCTTTATTTTAAATCA
*
96952235 TAAAAA-CTTTATTTTATATCA
1 TAAAAACCTTTATTTTAAATCA
96952256 TAAAAA
1 TAAAAA
96952262 TTAAAATTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (22 bp):
TAAAAACCTTTATTTTAAATCA
Found at i:96960334 original size:2 final size:2
Alignment explanation
Indices: 96960327--96960355 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
96960317 AATAATCATT
96960327 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
96960356 TATTTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:96965367 original size:2 final size:2
Alignment explanation
Indices: 96965355--96965399 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
96965345 TCTTACATAC
* * *
96965355 AT AT A- AT AT AT AT AT AT AT AT AT GT AT AT GT AT AT AT AT AC
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
96965396 AT AT
1 AT AT
96965400 CTGCTGTTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (2 bp):
AT
Found at i:96971652 original size:31 final size:31
Alignment explanation
Indices: 96971617--96971677 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
96971607 ACCTAATGAC
*
96971617 TTAAATAAAAACTTTTGAATAGTTCAGTGAT
1 TTAAATAAAAACTTTCGAATAGTTCAGTGAT
* *
96971648 TTAAATGAAAACTTTCGAATAGTTTAGTGA
1 TTAAATAAAAACTTTCGAATAGTTCAGTGA
96971678 CCAAATTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.41, C:0.07, G:0.15, T:0.38
Consensus pattern (31 bp):
TTAAATAAAAACTTTCGAATAGTTCAGTGAT
Found at i:96975737 original size:25 final size:25
Alignment explanation
Indices: 96975687--96975737 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
96975677 CTTCTTTTGC
* *
96975687 CTCTAAGCAATTGACTTTTCTTTAA
1 CTCTAAGCAATTGACTTGTCTATAA
96975712 CTCTAAGCAATTGACTTAGTC-ATAA
1 CTCTAAGCAATTGACTT-GTCTATAA
96975737 C
1 C
96975738 ATTACTCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.37
Consensus pattern (25 bp):
CTCTAAGCAATTGACTTGTCTATAA
Found at i:96978608 original size:2 final size:2
Alignment explanation
Indices: 96978562--96978593 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
96978552 TCATATACCG
96978562 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
96978594 GCATTAATTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:96984047 original size:14 final size:14
Alignment explanation
Indices: 96984007--96984036 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
96983997 AAATCCTAAG
*
96984007 TGGATGACAAACTA
1 TGGATGACAGACTA
96984021 TGGATGACAGACTA
1 TGGATGACAGACTA
96984035 TG
1 TG
96984037 TATGCATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (14 bp):
TGGATGACAGACTA
Found at i:96989668 original size:66 final size:66
Alignment explanation
Indices: 96989587--96989793 Score: 371
Period size: 66 Copynumber: 3.1 Consensus size: 66
96989577 AGCATAATGA
*
96989587 GAACCCATTCCGCTCATGTAGTCCATGGTCGGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
1 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
96989652 T
66 T
*
96989653 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTGAACCCTGTCATGACTTGAGAAGG
1 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
96989718 T
66 T
96989719 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCA-TCGAACCCTGTCATGACTTGAGAAG
1 GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTC-AACCCTGTCATGACTTGAGAAG
96989783 GT
65 GT
96989785 GAACGCCAT
1 GAAC-CCAT
96989794 GAAGATGAGG
Statistics
Matches: 136, Mismatches: 3, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
65 1 0.01
66 131 0.96
67 4 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (66 bp):
GAACCCATTCCGCTCATGTAGTCCATGGTCTGAGTACCATTCAACCCTGTCATGACTTGAGAAGG
T
Found at i:96993480 original size:25 final size:25
Alignment explanation
Indices: 96993446--96993494 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
96993436 AAGAATATTT
96993446 ATAGAACAAGCTATATAAATGATTA
1 ATAGAACAAGCTATATAAATGATTA
96993471 ATAGAACAAGCTATATAAATGATT
1 ATAGAACAAGCTATATAAATGATT
96993495 TTCTTTGTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.51, C:0.08, G:0.12, T:0.29
Consensus pattern (25 bp):
ATAGAACAAGCTATATAAATGATTA
Found at i:97002307 original size:18 final size:18
Alignment explanation
Indices: 97002286--97002332 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
97002276 CCTCTGCCTC
* *
97002286 AACCTCCTCTACCATGAT
1 AACCACCTCTACCACGAT
*
97002304 AACCACCTCTGCCACGAT
1 AACCACCTCTACCACGAT
97002322 AACCACCTCTA
1 AACCACCTCTA
97002333 TATGTGGCCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.30, C:0.43, G:0.06, T:0.21
Consensus pattern (18 bp):
AACCACCTCTACCACGAT
Found at i:97018400 original size:33 final size:32
Alignment explanation
Indices: 97018353--97018428 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 32
97018343 ATACCATCTT
** * *
97018353 AAAAAAAAGTGTCAAATTTAGGTACTAAATTAG
1 AAAAAAAAAAGTCAAATTTAGATACTAAACT-G
*
97018386 AAAAAAAAAAGTCAAGTTTAGATACTAAACTG
1 AAAAAAAAAAGTCAAATTTAGATACTAAACTG
97018418 AACAAAAAAAA
1 AA-AAAAAAAA
97018429 ATTTTAAATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 3 0.08
33 34 0.92
ACGTcount: A:0.59, C:0.08, G:0.12, T:0.21
Consensus pattern (32 bp):
AAAAAAAAAAGTCAAATTTAGATACTAAACTG
Found at i:97026830 original size:35 final size:31
Alignment explanation
Indices: 97026757--97026832 Score: 143
Period size: 31 Copynumber: 2.5 Consensus size: 31
97026747 TTGAAAAATA
97026757 ACAAATCAATCACTAACGTTATTAAAAAGTG
1 ACAAATCAATCACTAACGTTATTAAAAAGTG
97026788 ACAAATCAATCACTAACGTTATTAAAAAGTG
1 ACAAATCAATCACTAACGTTATTAAAAAGTG
*
97026819 ACTAATCAATCACT
1 ACAAATCAATCACT
97026833 CATTAACATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.26
Consensus pattern (31 bp):
ACAAATCAATCACTAACGTTATTAAAAAGTG
Found at i:97027299 original size:5 final size:5
Alignment explanation
Indices: 97027289--97027323 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
97027279 TCAAGTCTGG
97027289 GATAT GATAT GATAT GATAT GATAT GATAT GATAT
1 GATAT GATAT GATAT GATAT GATAT GATAT GATAT
97027324 AAACAGAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
GATAT
Found at i:97028870 original size:29 final size:29
Alignment explanation
Indices: 97028828--97028888 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
97028818 TTTTAATAGT
97028828 TTAATATTAAATTTAACTTAATACCTATC
1 TTAATATTAAATTTAACTTAATACCTATC
* * **
97028857 TTAATATTTAATTTAATTTAATGTCTATC
1 TTAATATTAAATTTAACTTAATACCTATC
97028886 TTA
1 TTA
97028889 TAGATAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.10, G:0.02, T:0.51
Consensus pattern (29 bp):
TTAATATTAAATTTAACTTAATACCTATC
Found at i:97028948 original size:18 final size:18
Alignment explanation
Indices: 97028920--97028958 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
97028910 TAATAATATT
97028920 TAATATTAAATTTAAT-C
1 TAATATTAAATTTAATGC
97028937 TAATATTTAAATTTAATGC
1 TAATA-TTAAATTTAATGC
97028956 TAA
1 TAA
97028959 AGTGATTAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (18 bp):
TAATATTAAATTTAATGC
Found at i:97033127 original size:22 final size:21
Alignment explanation
Indices: 97033092--97033167 Score: 59
Period size: 22 Copynumber: 3.7 Consensus size: 21
97033082 AAAAGGTATC
* * *
97033092 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
97033113 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
97033136 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
97033155 TGC-AATCATATCT
1 TACAAATCATATCT
97033168 AAGATTGTAT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 9 0.20
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97033143 original size:17 final size:19
Alignment explanation
Indices: 97033128--97033196 Score: 117
Period size: 17 Copynumber: 3.8 Consensus size: 19
97033118 AATCATATCT
97033128 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97033147 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
97033165 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
97033182 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
97033197 AATTGAAGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.34
18 16 0.34
19 15 0.32
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97033616 original size:45 final size:45
Alignment explanation
Indices: 97033560--97033827 Score: 290
Period size: 45 Copynumber: 5.9 Consensus size: 45
97033550 CAATATCGGC
* *
97033560 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * * *
97033605 TATCTTCGATCTGCTCCCCGTCTAATATAGATACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
*
97033650 T-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * *
97033694 TAGCTTTGATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * ** * * * * * * *
97033739 CATCTTGGATCTG-T-TTCGATGTAAACACATAAAGGTCAGATCTGT
1 TATCTTCGATCTGCTCCCCG-TCT-AATACAGAGATGCCAAATCTGT
97033784 TATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
1 TA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
97033828 ATCTTGGATC
Statistics
Matches: 179, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
43 2 0.01
44 42 0.23
45 107 0.60
47 23 0.13
48 3 0.02
49 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
Found at i:97033687 original size:89 final size:89
Alignment explanation
Indices: 97033568--97033827 Score: 281
Period size: 89 Copynumber: 2.9 Consensus size: 89
97033558 GCTATCTTTG
* *
97033568 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTAGCTTCGATCTGCTCCCCGTCTAATAC
*
97033633 AGATACGCCAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* * *
97033657 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTAGCTTTGATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTAGCTTCGATCTGCTCCCCGTCTAATAC
* * **
97033722 AGAGATGCCAAATCTGTCATCTTGG
66 AGAGACGCCAAATCTG-CTTCTTCA
** * * * * * * *
97033747 ATCTG-T-TTCGATGTAAACACATAAAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTA
1 ATCTGCTCCCCG-TCT-AATACAGAGACGCCAAATCTGTTA-G-CTTCGATCTGCTCCCCGTCTA
*
97033810 ATACAGAGATGCCAAATC
62 ATACAGAGACGCCAAATC
97033828 ATCTTGGATC
Statistics
Matches: 145, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
88 2 0.01
89 77 0.53
90 28 0.19
91 1 0.01
92 37 0.26
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTAGCTTCGATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:97033899 original size:78 final size:78
Alignment explanation
Indices: 97033770--97034061 Score: 388
Period size: 78 Copynumber: 3.7 Consensus size: 78
97033760 TAAACACATA
**
97033770 AAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
1 AAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
97033835 ATCTGCTTCAATG
66 ATCTGCTTCAATG
* * * *
97033848 AAGGTCCA-ATCTATTATGTCTTTGATCTGCTCCCTGTCTAATATAGAGATGCCAAATCATCTTG
1 AAGGT-CAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
*
97033912 GATCTGCTTTAATG
65 GATCTGCTTCAATG
* * * * *
97033926 AAGGTTAGATCTGCTGTGTCTTAGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGA
1 AAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
97033991 ATCTGCTTCAATG
66 ATCTGCTTCAATG
* * * * ** * *
97034004 AAGGTCAAATCCACTCTGTCTTCGATCTGCTCTCTATCGAATATAGAGATGCCAAATC
1 AAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
97034062 TGTTTCTTCG
Statistics
Matches: 187, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
77 1 0.01
78 184 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (78 bp):
AAGGTCAGATCTACTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
ATCTGCTTCAATG
Found at i:97034054 original size:156 final size:156
Alignment explanation
Indices: 97033770--97034061 Score: 467
Period size: 156 Copynumber: 1.9 Consensus size: 156
97033760 TAAACACATA
* * *
97033770 AAGGTCAGATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGG
1 AAGGTCAGATCTGCTATGTCTTAGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGA
* * * * * *
97033835 ATCTGCTTCAATGAAGGTCCAATCTATTATGTCTTTGATCTGCTCCCTGTCTAATATAGAGATGC
66 ATCTGCTTCAATGAAGGTCAAATCCACTATGTCTTCGATCTGCTCCCTATCGAATATAGAGATGC
97033900 CAAATCATCTTGGATCTGCTTTAATG
131 CAAATCATCTTGGATCTGCTTTAATG
* *
97033926 AAGGTTAGATCTGCTGTGTCTTAGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGA
1 AAGGTCAGATCTGCTATGTCTTAGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGA
* *
97033991 ATCTGCTTCAATGAAGGTCAAATCCACTCTGTCTTCGATCTGCTCTCTATCGAATATAGAGATGC
66 ATCTGCTTCAATGAAGGTCAAATCCACTATGTCTTCGATCTGCTCCCTATCGAATATAGAGATGC
97034056 CAAATC
131 CAAATC
97034062 TGTTTCTTCG
Statistics
Matches: 123, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
156 123 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (156 bp):
AAGGTCAGATCTGCTATGTCTTAGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGA
ATCTGCTTCAATGAAGGTCAAATCCACTATGTCTTCGATCTGCTCCCTATCGAATATAGAGATGC
CAAATCATCTTGGATCTGCTTTAATG
Found at i:97034082 original size:44 final size:43
Alignment explanation
Indices: 97034022--97034104 Score: 105
Period size: 43 Copynumber: 1.9 Consensus size: 43
97034012 ATCCACTCTG
*
97034022 TCTTCGATCTGCTCTCT-ATCGAATATAGAGATGCCAAATCTGTT
1 TCTTCGATCTGCTCTCTGAT--AATACAGAGATGCCAAATCTGTT
* * *
97034066 TCTTCGATTTGTTCTCTGATAGTACAGAGATGCCAAATC
1 TCTTCGATCTGCTCTCTGATAATACAGAGATGCCAAATC
97034105 ATCTTAGATC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
43 17 0.50
44 15 0.44
45 2 0.06
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (43 bp):
TCTTCGATCTGCTCTCTGATAATACAGAGATGCCAAATCTGTT
Found at i:97034438 original size:87 final size:87
Alignment explanation
Indices: 97034287--97034847 Score: 897
Period size: 87 Copynumber: 6.4 Consensus size: 87
97034277 AAATCTGTTA
* *
97034287 TCTTTGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
97034352 CGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* * *
97034374 TCTTTGATCTGCTCCTTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAATGCAAACA
1 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
* *
97034439 TGTGAAAACCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* * * *
97034461 TCATCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTACTTCAACGCAAACA
1 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
97034526 AGTGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* * * *
97034548 TCTTTAATCTGCTCCCTGCCAATACAGAGATGCCAAATCATCTTAGATTTTCTTCAACATAAACA
1 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
97034613 CGTGAAAGCCAAATCAGCTATT
66 CGTGAAAGCCAAATCAGCTATG
* * *
97034635 TCCTCGATCTGCTCCCTGCCCATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
97034700 CATGAAAGCCAAATCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
*
97034722 TCTTTGATCTGCTCCCTGCCAATACGGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
1 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
*
97034787 CGTGAAAGCCAAACCAGCTATG
66 CGTGAAAGCCAAATCAGCTATG
* *
97034809 TCCTCGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
1 TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATC
97034848 TGCTGTCTTC
Statistics
Matches: 433, Mismatches: 41, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 433 1.00
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (87 bp):
TCTTTGATCTGCTCCCTGCCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACA
CGTGAAAGCCAAATCAGCTATG
Found at i:97034500 original size:46 final size:45
Alignment explanation
Indices: 97034359--97034980 Score: 133
Period size: 44 Copynumber: 14.2 Consensus size: 45
97034349 ACACGTGAAA
* *
97034359 GCCAAATCAGCTATGTCTTTGATCTGCTCCTTGCCAATACAGAGAC
1 GCCAAATCAGCTATGTC-ATGATCTGCTCCATGCCAATACAGAGAC
* * * * *
97034405 GCCAAATCA--TCT-T-A-GATTTGCTTCAATG-CAA-ACATGTGAAA
1 GCCAAATCAGCTATGTCATGATCTGC-TCCATGCCAATACA-GAG-AC
* *
97034446 ACCAAATCAGCTATGTCATCGATCTGCTCCCTGCCAATACAGAGAC
1 GCCAAATCAGCTATGTCAT-GATCTGCTCCATGCCAATACAGAGAC
* * * * * * *
97034492 GCCAAATCA--TCT-T-A-GATTTACTTCA-ACGCAA-ACAAGTGAAA
1 GCCAAATCAGCTATGTCATGATCTGCTCCATGC-CAATAC-AGAG-AC
* * * *
97034533 GCCAAATCAGCTATGTCTTTAATCTGCTCCCTGCCAATACAGAGAT
1 GCCAAATCAGCTATGTC-ATGATCTGCTCCATGCCAATACAGAGAC
* * * * * * * *
97034579 GCCAAATCA--TCT-T-A-GATTTTCTTCA--ACATAAACACGTGAAA
1 GCCAAATCAGCTATGTCATGATCTGCTCCATGCCA-ATACA-GAG-AC
* * * *
97034620 GCCAAATCAGCTATTTCCTCGATCTGCTCCCTGCCCATACAGAGAC
1 GCCAAATCAGCTATGTCAT-GATCTGCTCCATGCCAATACAGAGAC
* * * * ** * *
97034666 GCCAAATCA--TCT-T-A-GATTTGCTTCAACGTAAACACATGA-AA
1 GCCAAATCAGCTATGTCATGATCTGC-TCCATGCCAATACA-GAGAC
* * *
97034707 GCCAAATCAGCTATGTCTTTGATCTGCTCCCTGCCAATACGGAGAC
1 GCCAAATCAGCTATGTC-ATGATCTGCTCCATGCCAATACAGAGAC
* * * * * * *
97034753 GCCAAATCA--TCT-T-A-GATTTGCTTCA-ACGTAA-ACACGTGAAA
1 GCCAAATCAGCTATGTCATGATCTGCTCCATGC-CAATACA-GAG-AC
* * *
97034794 GCCAAACCAGCTATGTCCTCGATCTGCTCCCTGCCAATACAGAGAC
1 GCCAAATCAGCTATGTCAT-GATCTGCTCCATGCCAATACAGAGAC
* * *
97034840 GCCAAATCTGC--TGTCTTCGATCTGCTCTC-TGCCAATACAGAGAT
1 GCCAAATCAGCTATGTCAT-GATCTGCTC-CATGCCAATACAGAGAC
* * * *
97034884 GCCAAATCTG-T-TATCTTCGATCTGCTCTC-TGCCAATACAGAGAT
1 GCCAAATCAGCTATGTCAT-GATCTGCTC-CATGCCAATACAGAGAC
* * * *
97034928 GCCAAATCTGCTA--TCTTCGATCTACTCTC-TGACAATACAGAGAC
1 GCCAAATCAGCTATGTCAT-GATCTGCTC-CATGCCAATACAGAGAC
97034972 GCCAAATCA
1 GCCAAATCA
97034981 TCTTGGATTT
Statistics
Matches: 413, Mismatches: 106, Indels: 116
0.65 0.17 0.18
Matches are distributed among these distances:
38 2 0.00
39 13 0.03
40 50 0.12
41 59 0.14
42 3 0.01
43 15 0.04
44 132 0.32
45 5 0.01
46 69 0.17
47 50 0.12
48 14 0.03
49 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.26
Consensus pattern (45 bp):
GCCAAATCAGCTATGTCATGATCTGCTCCATGCCAATACAGAGAC
Found at i:97034861 original size:44 final size:44
Alignment explanation
Indices: 97034812--97035110 Score: 279
Period size: 44 Copynumber: 6.8 Consensus size: 44
97034802 AGCTATGTCC
* *
97034812 TCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTGTCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
* *
97034856 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
*
97034900 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
* *
97034944 TCGATCTACTCTCTGACAATACAGAGACGCCAAA--T-C-ATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
* * ** * * * ** *
97034984 TGGATTTGCT-TCAACGTAA-ACATGTGAAAGCCAAATCAATTATGTCT
1 TCGATCTGCTCTCTGC-CAATACA-GAG-ACGCCAAATC--TGCTATCT
* * * * *
97035031 TCGATCTGCTCTTTGCCAATATAGAGATGTCAAATCT-ATCATCT
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCT-ATCT
**
97035075 TCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
1 TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATC
97035111 ATCTTGGATC
Statistics
Matches: 207, Mismatches: 36, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
39 5 0.02
40 15 0.07
41 8 0.04
42 1 0.00
43 2 0.01
44 148 0.71
45 1 0.00
46 8 0.04
47 15 0.07
48 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (44 bp):
TCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTGCTATCT
Found at i:97034920 original size:88 final size:86
Alignment explanation
Indices: 97034812--97035110 Score: 309
Period size: 88 Copynumber: 3.4 Consensus size: 86
97034802 AGCTATGTCC
* *
97034812 TCGATCTGCTCCCTGCCAATACAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTGCCAATA
1 TCGATCTGCTCTCTACCAATACAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTGCCAATA
97034877 CAGAGATGCCAAATCTGTTATCT
66 CAGAGATGCCAAATC--TTATCT
* * * * *
97034900 TCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGCTATCTTCGATCTACTCTCTGACAATA
1 TCGATCTGCTCTCTACCAATACAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTGCCAATA
*
97034965 CAGAGACGCCAAATC--ATCT
66 CAGAGATGCCAAATCTTATCT
* * * * * * ** *
97034984 TGGATTTGCT-TCAACGTAA-ACATGTGAAAGCCAAATCAATTATGTCTTCGATCTGCTCTTTGC
1 TCGATCTGCTCTCTAC-CAATACA-GAG-ACGCCAAATC--TGCTGTCTTCGATCTGCTCTCTGC
* *
97035047 CAATATAGAGATGTCAAATCTATCATCT
61 CAATACAGAGATGCCAAATCT-T-ATCT
*
97035075 TCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
1 TCGATCTGCTCTCTACCAATACAGAGACGCCAAATC
97035111 ATCTTGGATC
Statistics
Matches: 171, Mismatches: 29, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
83 6 0.04
84 16 0.09
85 9 0.05
87 35 0.20
88 74 0.43
90 9 0.05
91 16 0.09
92 6 0.04
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (86 bp):
TCGATCTGCTCTCTACCAATACAGAGACGCCAAATCTGCTGTCTTCGATCTGCTCTCTGCCAATA
CAGAGATGCCAAATCTTATCT
Found at i:97035016 original size:219 final size:220
Alignment explanation
Indices: 97034707--97035110 Score: 578
Period size: 219 Copynumber: 1.8 Consensus size: 220
97034697 ACACATGAAA
* * * *
97034707 GCCAAATCAGCTATGTCTTTGATCTGCTCCCTGCCAATACGGAGACGCCAAATCATCTTAGATTT
1 GCCAAATCAGCTA-GTCTTCGATCTACTCCCTGACAATACAGAGACGCCAAATCATCTTAGATTT
*
97034772 GCTTCAACGTAAACACGTGAAAGCCAAACCAGCTATGTCCTCGATCTGCTCCCTGCCAATACAGA
65 GCTTCAACGTAAACACGTGAAAGCCAAACCAACTATGTCCTCGATCTGCTCCCTGCCAATACAGA
* * ** *
97034837 GACGCCAAATCT-GCTGTCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTGTTATCTT
130 GACGCCAAATCTATC-ATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCTGTTATCTT
97034901 CGATCTGCTCTCTGCCAATACAGAGAT
194 CGATCTGCTCTCTGCCAATACAGAGAT
* * *
97034928 GCCAAATCTGCTA-TCTTCGATCTACTCTCTGACAATACAGAGACGCCAAATCATCTTGGATTTG
1 GCCAAATCAGCTAGTCTTCGATCTACTCCCTGACAATACAGAGACGCCAAATCATCTTAGATTTG
* * * * ** *
97034992 CTTCAACGTAAACATGTGAAAGCCAAATCAATTATGTCTTCGATCTGCTCTTTGCCAATATAGAG
66 CTTCAACGTAAACACGTGAAAGCCAAACCAACTATGTCCTCGATCTGCTCCCTGCCAATACAGAG
* *
97035057 ATGTCAAATCTATCATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
131 ACGCCAAATCTATCATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATC
97035111 ATCTTGGATC
Statistics
Matches: 160, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
219 147 0.92
220 1 0.01
221 12 0.08
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (220 bp):
GCCAAATCAGCTAGTCTTCGATCTACTCCCTGACAATACAGAGACGCCAAATCATCTTAGATTTG
CTTCAACGTAAACACGTGAAAGCCAAACCAACTATGTCCTCGATCTGCTCCCTGCCAATACAGAG
ACGCCAAATCTATCATCTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCTGTTATCTTCG
ATCTGCTCTCTGCCAATACAGAGAT
Found at i:97036095 original size:14 final size:13
Alignment explanation
Indices: 97036079--97036135 Score: 78
Period size: 14 Copynumber: 4.2 Consensus size: 13
97036069 GGCCTCTTCA
97036079 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
*
97036092 ATTTTTTCTTGTATT
1 -TTTTTTCTT-TTTT
*
97036107 TTTTTTCTTTTCT
1 TTTTTTCTTTTTT
97036120 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
97036133 TTT
1 TTT
97036136 GAAATAGAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
13 17 0.45
14 18 0.47
15 3 0.08
ACGTcount: A:0.04, C:0.09, G:0.02, T:0.86
Consensus pattern (13 bp):
TTTTTTCTTTTTT
Found at i:97039587 original size:42 final size:42
Alignment explanation
Indices: 97039464--97039589 Score: 243
Period size: 42 Copynumber: 3.0 Consensus size: 42
97039454 AATAACAAAG
*
97039464 TTAACTTTCGACCATGATCTGACTGTAGCTCATATTGGTACT
1 TTAACTTTCGACCATGATCTGACTGTAGCTCATATTGGTGCT
97039506 TTAACTTTCGACCATGATCTGACTGTAGCTCATATTGGTGCT
1 TTAACTTTCGACCATGATCTGACTGTAGCTCATATTGGTGCT
97039548 TTAACTTTCGACCATGATCTGACTGTAGCTCATATTGGTGCT
1 TTAACTTTCGACCATGATCTGACTGTAGCTCATATTGGTGCT
97039590 CAACTTGCTC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 83 1.00
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.38
Consensus pattern (42 bp):
TTAACTTTCGACCATGATCTGACTGTAGCTCATATTGGTGCT
Found at i:97041950 original size:22 final size:21
Alignment explanation
Indices: 97041915--97041972 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
97041905 AAAAGGTATC
* * *
97041915 TACAAATTAAATCTCTAATAT
1 TACAAATCATATCTCTAAGAT
97041936 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
97041959 TGCATATCATATCT
1 TACAAATCATATCT
97041973 AAGATTGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97041975 original size:19 final size:19
Alignment explanation
Indices: 97041951--97042095 Score: 230
Period size: 19 Copynumber: 7.9 Consensus size: 19
97041941 AATCATATCT
97041951 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
97041970 TCTAAGATTGTA-ATCATA
1 TCTAAGATTGCATATCATA
97041988 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
97042005 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97042024 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
97042042 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
97042059 TCTAATATTGCATATCATA
1 TCTAAGATTGCATATCATA
97042078 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97042096 TGAAGATTAT
Statistics
Matches: 117, Mismatches: 3, Indels: 12
0.89 0.02 0.09
Matches are distributed among these distances:
17 31 0.26
18 32 0.27
19 54 0.46
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97042019 original size:54 final size:54
Alignment explanation
Indices: 97041951--97042095 Score: 263
Period size: 54 Copynumber: 2.7 Consensus size: 54
97041941 AATCATATCT
*
97041951 TCTAAGATTGCATATCATATCTAAGATTGTAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
97042005 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
97042059 TCTAATATTGCATATCATATCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCATATCTAAGATTGCA-ATCAT
97042096 TGAAGATTAT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
54 83 0.94
55 5 0.06
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:97042032 original size:73 final size:71
Alignment explanation
Indices: 97041944--97042096 Score: 247
Period size: 73 Copynumber: 2.1 Consensus size: 71
97041934 ATTACAAAAT
97041944 CATATC-TTCTAAGATTGCATATCATATCTAAGATTGTAATCATATCTAAGATTG-TATCATATC
1 CATATCATTCTAAGATTGCA-ATCATATCTAAGATTGT-ATCATATCTAAGATTGATATCATATC
97042007 TAAGATTG
64 TAAGATTG
*
97042015 CATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAATATTGCATATCATATC
1 CATATCAT-TCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTG-ATATCATATC
97042080 TAAGATTG
64 TAAGATTG
97042088 CATATCATT
1 CATATCATT
97042097 GAAGATTATA
Statistics
Matches: 77, Mismatches: 1, Indels: 7
0.91 0.01 0.08
Matches are distributed among these distances:
71 21 0.27
72 19 0.25
73 37 0.48
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (71 bp):
CATATCATTCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGATATCATATCTA
AGATTG
Found at i:97042451 original size:15 final size:16
Alignment explanation
Indices: 97042431--97042461 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
97042421 ATAAACCCCA
97042431 TATAAGATAAT-ATAT
1 TATAAGATAATGATAT
97042446 TATAAGATAATGATAT
1 TATAAGATAATGATAT
97042462 AATGATCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
TATAAGATAATGATAT
Found at i:97048001 original size:29 final size:29
Alignment explanation
Indices: 97047960--97048015 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
97047950 TCAAATTATT
97047960 TAAAAAAATATT-ATTATATTTATTTAATA
1 TAAAAAAATATTAATT-TATTTATTTAATA
*
97047989 TAAAAATAA-ATTAATTTATTTTTTTAA
1 TAAAAA-AATATTAATTTATTTATTTAA
97048016 ATATGTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (29 bp):
TAAAAAAATATTAATTTATTTATTTAATA
Found at i:97048173 original size:127 final size:127
Alignment explanation
Indices: 97048024--97048285 Score: 336
Period size: 127 Copynumber: 2.1 Consensus size: 127
97048014 AAATATGTAA
* *
97048024 AATT-AAA-ATTAAAATACATTTGAGTCACACTTAAA-ATTTTACGTATACAATTGTAACAAATC
1 AATTAAAATATTAAAATACATTTGAATCACAC-TAAATATTTTACATATACAATTGTAACAAATC
** * * *
97048086 AAAGTTT-ATGTATCAAACTGTATATTAAATCAAAATTTATATATACTTTTAAAATTTATATC-T
65 AAAGTTTAATACAT-AAACTATACATTAAATCAAAATTTATATATAATTTTAAAATTTAT-TCTT
* * * *
97048149 AATTAAAATATTAAAATATATTTGAATCACACTAAATGTTTTATATATACAATTGTAACAAATTA
1 AATTAAAATATTAAAATACATTTGAATCACACTAAATATTTTACATATACAATTGTAACAAATCA
* * *
97048214 AAGTTTAATACATAAATTATACATTAAATTAAAATTTATATATAATTTTAAGATTTATTCTT
66 AAGTTTAATACATAAACTATACATTAAATCAAAATTTATATATAATTTTAAAATTTATTCTT
97048276 AATTAAAATA
1 AATTAAAATA
97048286 GACTTCAAAA
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
125 4 0.03
126 9 0.08
127 101 0.86
128 4 0.03
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (127 bp):
AATTAAAATATTAAAATACATTTGAATCACACTAAATATTTTACATATACAATTGTAACAAATCA
AAGTTTAATACATAAACTATACATTAAATCAAAATTTATATATAATTTTAAAATTTATTCTT
Found at i:97048788 original size:19 final size:19
Alignment explanation
Indices: 97048764--97048801 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
97048754 TATTCCTTTA
*
97048764 TAAATTTTATGATTTTAAT
1 TAAATTTTATAATTTTAAT
97048783 TAAATTTTATAATTTTAAT
1 TAAATTTTATAATTTTAAT
97048802 AACTTTAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (19 bp):
TAAATTTTATAATTTTAAT
Found at i:97051407 original size:9 final size:9
Alignment explanation
Indices: 97051391--97051442 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
97051381 TGTTTTTCAC
97051391 TTTT-TTAT
1 TTTTATTAT
97051399 TTTTATTAT
1 TTTTATTAT
*
97051408 TTTTAAAATAT
1 TTTT--ATTAT
97051419 CATTTTATTAT
1 --TTTTATTAT
97051430 TTTTATTAT
1 TTTTATTAT
97051439 TTTT
1 TTTT
97051443 TAAAATTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
8 4 0.11
9 21 0.57
11 8 0.22
13 4 0.11
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTATTAT
Found at i:97062786 original size:35 final size:35
Alignment explanation
Indices: 97062747--97063006 Score: 283
Period size: 35 Copynumber: 7.4 Consensus size: 35
97062737 TTTCAGTAGG
* ***
97062747 CATGCTAATCAAAATCAGTATAGCAACATGCTTAA
1 CATGCTAATCAGAATCAGTATAATGACATGCTTAA
* *
97062782 CATGCAAATCAGAATCAGTATAATGGCATGCTTAA
1 CATGCTAATCAGAATCAGTATAATGACATGCTTAA
* *
97062817 CATG-TGAATCAGAATCAGAATAATGACATGTTTAA
1 CATGCT-AATCAGAATCAGTATAATGACATGCTTAA
* *
97062852 CATGCGAATCAGAATCAATATAATGACATGCTTAA
1 CATGCTAATCAGAATCAGTATAATGACATGCTTAA
* * * *
97062887 CATGCGAATCATAATCGGTATAATGACATGCTTTA
1 CATGCTAATCAGAATCAGTATAATGACATGCTTAA
* * *
97062922 CATG-TGAAACAAAATCAGAATAATGACATGCTTAA
1 CATGCT-AATCAGAATCAGTATAATGACATGCTTAA
* *
97062957 CATG-TGAATTAGAATCAGTATAATGGCATGCTTAA
1 CATGCT-AATCAGAATCAGTATAATGACATGCTTAA
* *
97062992 CGTGCGAATCAGAAT
1 CATGCTAATCAGAAT
97063007 ATCAAAAAAT
Statistics
Matches: 189, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
35 189 1.00
ACGTcount: A:0.41, C:0.16, G:0.17, T:0.27
Consensus pattern (35 bp):
CATGCTAATCAGAATCAGTATAATGACATGCTTAA
Found at i:97062834 original size:70 final size:70
Alignment explanation
Indices: 97062753--97063006 Score: 312
Period size: 70 Copynumber: 3.6 Consensus size: 70
97062743 TAGGCATGCT
* *** *
97062753 AATCAAAATCAGTATAGCAACATGCTTAACATGCAAATCAGAATCAGTATAATGGCATGCTTAAC
1 AATCAGAATCAGTATAATGACATGCTTAACATGCAAATCAGAATCAGTATAATGACATGCTTAAC
97062818 ATGTG
66 ATGTG
* * * *
97062823 AATCAGAATCAGAATAATGACATGTTTAACATGCGAATCAGAATCAATATAATGACATGCTTAAC
1 AATCAGAATCAGTATAATGACATGCTTAACATGCAAATCAGAATCAGTATAATGACATGCTTAAC
*
97062888 ATGCG
66 ATGTG
* * * * * *
97062893 AATCATAATCGGTATAATGACATGCTTTACATGTGAAA-CAAAATCAGAATAATGACATGCTTAA
1 AATCAGAATCAGTATAATGACATGCTTAACATG-CAAATCAGAATCAGTATAATGACATGCTTAA
97062957 CATGTG
65 CATGTG
* * * *
97062963 AATTAGAATCAGTATAATGGCATGCTTAACGTGCGAATCAGAAT
1 AATCAGAATCAGTATAATGACATGCTTAACATGCAAATCAGAAT
97063007 ATCAAAAAAT
Statistics
Matches: 152, Mismatches: 30, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
69 2 0.01
70 148 0.97
71 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.27
Consensus pattern (70 bp):
AATCAGAATCAGTATAATGACATGCTTAACATGCAAATCAGAATCAGTATAATGACATGCTTAAC
ATGTG
Found at i:97062929 original size:105 final size:105
Alignment explanation
Indices: 97062772--97063006 Score: 353
Period size: 105 Copynumber: 2.2 Consensus size: 105
97062762 CAGTATAGCA
* * * *
97062772 ACATGCTTAACATGCAAATCAGAATCAGTATAATGGCATGCTTAACATGTGAATCAGAATCAGAA
1 ACATGCTTAACATGCGAATCAGAATCAGTATAATGACATGCTTAACATGTGAAACAAAATCAGAA
*
97062837 TAATGACATGTTTAACATGCGAATCAGAATCAATATAATG
66 TAATGACATGCTTAACATGCGAATCAGAATCAATATAATG
* * *
97062877 ACATGCTTAACATGCGAATCATAATCGGTATAATGACATGCTTTACATGTGAAACAAAATCAGAA
1 ACATGCTTAACATGCGAATCAGAATCAGTATAATGACATGCTTAACATGTGAAACAAAATCAGAA
* * *
97062942 TAATGACATGCTTAACATGTGAATTAGAATCAGTATAATG
66 TAATGACATGCTTAACATGCGAATCAGAATCAATATAATG
* *
97062982 GCATGCTTAACGTGCGAATCAGAAT
1 ACATGCTTAACATGCGAATCAGAAT
97063007 ATCAAAAAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
105 116 1.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.27
Consensus pattern (105 bp):
ACATGCTTAACATGCGAATCAGAATCAGTATAATGACATGCTTAACATGTGAAACAAAATCAGAA
TAATGACATGCTTAACATGCGAATCAGAATCAATATAATG
Found at i:97069891 original size:16 final size:14
Alignment explanation
Indices: 97069872--97069908 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 14
97069862 TTCTTCTCTT
97069872 TTTTTTTCCACGAAA
1 TTTTTTT-CACGAAA
97069887 CTTTTTTTCACGAAA
1 -TTTTTTTCACGAAA
97069902 TTTTTTT
1 TTTTTTT
97069909 AATACCGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.33
15 7 0.33
16 7 0.33
ACGTcount: A:0.22, C:0.16, G:0.05, T:0.57
Consensus pattern (14 bp):
TTTTTTTCACGAAA
Found at i:97069908 original size:15 final size:16
Alignment explanation
Indices: 97069871--97069908 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
97069861 GTTCTTCTCT
97069871 TTTTTTTTCCACGAAA
1 TTTTTTTTCCACGAAA
*
97069887 CTTTTTTT-CACGAAA
1 TTTTTTTTCCACGAAA
97069902 TTTTTTT
1 TTTTTTT
97069909 AATACCGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.21, C:0.16, G:0.05, T:0.58
Consensus pattern (16 bp):
TTTTTTTTCCACGAAA
Found at i:97070270 original size:23 final size:23
Alignment explanation
Indices: 97070240--97070286 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
97070230 CCTACGGTAT
*
97070240 GATTGACCGCGACACTCCAAAAA
1 GATTGACCGCCACACTCCAAAAA
*
97070263 GATTGACCGCCACACTTCAAAAA
1 GATTGACCGCCACACTCCAAAAA
97070286 G
1 G
97070287 GGATGGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.30, G:0.17, T:0.15
Consensus pattern (23 bp):
GATTGACCGCCACACTCCAAAAA
Found at i:97079819 original size:7 final size:7
Alignment explanation
Indices: 97079807--97079836 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
97079797 AATAAGAACT
97079807 GATTTGG
1 GATTTGG
97079814 GATTTGG
1 GATTTGG
*
97079821 AATTTGG
1 GATTTGG
97079828 GATTTGG
1 GATTTGG
97079835 GA
1 GA
97079837 AAAGGGTCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (7 bp):
GATTTGG
Found at i:97084110 original size:32 final size:32
Alignment explanation
Indices: 97084069--97084131 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
97084059 CACACAGTTC
* * *
97084069 GATAAATATCAGAGCTGTAACAATCTGGTATG
1 GATAAATATCAGACCAGTAACAATCAGGTATG
*
97084101 GATAAATATCAGACCAGTAATAATCAGGTAT
1 GATAAATATCAGACCAGTAACAATCAGGTAT
97084132 ACTTAACAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (32 bp):
GATAAATATCAGACCAGTAACAATCAGGTATG
Found at i:97106531 original size:5 final size:5
Alignment explanation
Indices: 97106516--97106557 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
97106506 TCATATGTCC
*
97106516 CCCAA CTCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CC
1 CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CCCAA CC
97106558 TTTGAATCAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.38, C:0.60, G:0.00, T:0.02
Consensus pattern (5 bp):
CCCAA
Found at i:97112292 original size:15 final size:15
Alignment explanation
Indices: 97112272--97112303 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
97112262 TCTTACATGA
97112272 GTTAATCCAACCTAT
1 GTTAATCCAACCTAT
97112287 GTTAATCCAACCTAT
1 GTTAATCCAACCTAT
97112302 GT
1 GT
97112304 ACATGCCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.25, G:0.09, T:0.34
Consensus pattern (15 bp):
GTTAATCCAACCTAT
Found at i:97120873 original size:93 final size:93
Alignment explanation
Indices: 97120761--97120932 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97120751 CGCCCATAAG
* *
97120761 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97120826 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
97120854 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97120919 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97120933 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:97120929 original size:46 final size:46
Alignment explanation
Indices: 97120754--97120929 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
97120744 TGTAACCCGC
* * *
97120754 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
97120800 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
97120850 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
97120893 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97120930 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:97128451 original size:93 final size:93
Alignment explanation
Indices: 97128339--97128510 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97128329 CGCCCATAAG
* *
97128339 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97128404 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
97128432 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97128497 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97128511 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.