Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 321 of 325
Found at i:97128507 original size:46 final size:46
Alignment explanation
Indices: 97128332--97128507 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
97128322 TGTAACCCGC
* * *
97128332 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
97128378 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
97128428 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
97128471 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97128508 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:97133468 original size:2 final size:2
Alignment explanation
Indices: 97133461--97133485 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97133451 TAAATATGAA
97133461 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
97133486 AGGAAATGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:97140838 original size:16 final size:15
Alignment explanation
Indices: 97140812--97140841 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
97140802 AATTTATTTG
97140812 AAAATTAAAAAAATT
1 AAAATTAAAAAAATT
97140827 AAAATCTAAAAAAAT
1 AAAAT-TAAAAAAAT
97140842 ACCTTTTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATTAAAAAAATT
Found at i:97147269 original size:12 final size:12
Alignment explanation
Indices: 97147252--97147276 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97147242 TCGATTTGTA
97147252 TTAATATTATTG
1 TTAATATTATTG
97147264 TTAATATTATTG
1 TTAATATTATTG
97147276 T
1 T
97147277 CAACATAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (12 bp):
TTAATATTATTG
Found at i:97154241 original size:28 final size:28
Alignment explanation
Indices: 97154184--97154244 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
97154174 CAAAACTTAT
* **
97154184 TTTTATTTAATTATAATATATTTTTTAA
1 TTTTATTTAATTATAAAATATTTTAAAA
*
97154212 TTTTATTTTATTA-AAAATATTTATAAAA
1 TTTTATTTAATTATAAAATATTT-TAAAA
97154240 TTTTA
1 TTTTA
97154245 CAAATATAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 8 0.29
28 20 0.71
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (28 bp):
TTTTATTTAATTATAAAATATTTTAAAA
Found at i:97154910 original size:12 final size:13
Alignment explanation
Indices: 97154888--97154937 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
97154878 ACATTAAGAG
97154888 GTTTTTGAAAAAA
1 GTTTTTGAAAAAA
97154901 GTTTTT--AAAAA
1 GTTTTTGAAAAAA
* *
97154912 GTTCTATAGAAAAAT
1 GTT-T-TTGAAAAAA
97154927 GTTTTTGAAAA
1 GTTTTTGAAAA
97154938 TTTTAGTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
11 8 0.27
12 1 0.03
13 13 0.43
14 1 0.03
15 7 0.23
ACGTcount: A:0.44, C:0.02, G:0.14, T:0.40
Consensus pattern (13 bp):
GTTTTTGAAAAAA
Found at i:97156596 original size:39 final size:39
Alignment explanation
Indices: 97156541--97156619 Score: 133
Period size: 39 Copynumber: 2.0 Consensus size: 39
97156531 CAAGACATGG
*
97156541 TTTATTCCTTTCATCTAAGGA-ACAAAATTTAACTATCAA
1 TTTATTCCTTTAATCTAA-GATACAAAATTTAACTATCAA
97156580 TTTATTCCTTTAATCTAAGATACAAAATTTAACTATCAA
1 TTTATTCCTTTAATCTAAGATACAAAATTTAACTATCAA
97156619 T
1 T
97156620 CATTGGAACA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 2 0.05
39 36 0.95
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (39 bp):
TTTATTCCTTTAATCTAAGATACAAAATTTAACTATCAA
Found at i:97159975 original size:2 final size:2
Alignment explanation
Indices: 97159968--97159995 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
97159958 TCAAATAATC
97159968 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97159996 TATGTTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97161061 original size:10 final size:10
Alignment explanation
Indices: 97161018--97161159 Score: 50
Period size: 10 Copynumber: 14.7 Consensus size: 10
97161008 TATTTTTATC
97161018 AAAAAATCATT
1 AAAAAATCA-T
* *
97161029 AAAAAGT-AA
1 AAAAAATCAT
* *
97161038 AAAAAATTAC
1 AAAAAATCAT
97161048 AAAAAATCAT
1 AAAAAATCAT
97161058 -AAAAAT-AT
1 AAAAAATCAT
*
97161066 -AAAAATTAT
1 AAAAAATCAT
*
97161075 -TAAAA-C-T
1 AAAAAATCAT
* *
97161082 CAAAATTCAT
1 AAAAAATCAT
* * *
97161092 ATAAACTTAT
1 AAAAAATCAT
* *
97161102 TAAAAATTAT
1 AAAAAATCAT
*
97161112 AAATAATCAT
1 AAAAAATCAT
97161122 -AAAAATCAT
1 AAAAAATCAT
*
97161131 AAAAAAACTTAT
1 -AAAAAA-TCAT
97161143 AAATAAAT-AT
1 AAA-AAATCAT
97161153 AAAAAAT
1 AAAAAAT
97161160 TTATAATAAA
Statistics
Matches: 100, Mismatches: 22, Indels: 20
0.70 0.15 0.14
Matches are distributed among these distances:
7 1 0.01
8 11 0.11
9 31 0.31
10 36 0.36
11 15 0.15
12 6 0.06
ACGTcount: A:0.65, C:0.07, G:0.01, T:0.27
Consensus pattern (10 bp):
AAAAAATCAT
Found at i:97161067 original size:8 final size:9
Alignment explanation
Indices: 97161049--97161135 Score: 63
Period size: 9 Copynumber: 9.6 Consensus size: 9
97161039 AAAAATTACA
97161049 AAAAATCAT
1 AAAAATCAT
97161058 AAAAAT-AT
1 AAAAATCAT
*
97161066 AAAAATTAT
1 AAAAATCAT
*
97161075 TAAAA-C-T
1 AAAAATCAT
*
97161082 CAAAATTCAT
1 -AAAAATCAT
* *
97161092 ATAAACTTATT
1 A-AAAATCA-T
*
97161103 AAAAATTAT
1 AAAAATCAT
97161112 AAATAATCAT
1 AAA-AATCAT
97161122 AAAAATCAT
1 AAAAATCAT
97161131 AAAAA
1 AAAAA
97161136 AACTTATAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
7 1 0.02
8 11 0.17
9 29 0.46
10 20 0.32
11 2 0.03
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (9 bp):
AAAAATCAT
Found at i:97161168 original size:24 final size:22
Alignment explanation
Indices: 97161133--97161194 Score: 60
Period size: 21 Copynumber: 2.9 Consensus size: 22
97161123 AAAATCATAA
*
97161133 AAAAACTTATAAATAAATATAA--
1 AAAAA-TTAT-AATAAATAAAACT
*
97161155 AAAATTTATAATAAA-AAAACT
1 AAAAATTATAATAAATAAAACT
97161176 AAAAATTATAAT-AATAAAA
1 AAAAATTATAATAAATAAAA
97161195 AAAGTCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 3 0.09
20 8 0.24
21 19 0.56
22 4 0.12
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.27
Consensus pattern (22 bp):
AAAAATTATAATAAATAAAACT
Found at i:97161179 original size:21 final size:22
Alignment explanation
Indices: 97161154--97161195 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
97161144 AATAAATATA
97161154 AAAAATTTATAATAA-AAAAACT
1 AAAAA-TTATAATAATAAAAACT
97161176 AAAAATTATAATAATAAAAA
1 AAAAATTATAATAATAAAAA
97161196 AAGTCATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (22 bp):
AAAAATTATAATAATAAAAACT
Found at i:97161195 original size:24 final size:22
Alignment explanation
Indices: 97161154--97161197 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
97161144 AATAAATATA
97161154 AAAAATTTATAATAAAAAAACT
1 AAAAATTTATAATAAAAAAACT
97161176 AAAAATTATAATAATAAAAAAA
1 AAAAATT-T-ATAATAAAAAAA
97161198 GTCATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 12 0.60
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (22 bp):
AAAAATTTATAATAAAAAAACT
Found at i:97183270 original size:47 final size:47
Alignment explanation
Indices: 97183170--97183395 Score: 272
Period size: 46 Copynumber: 5.0 Consensus size: 47
97183160 TGATGTCATA
* * *
97183170 GTATCTTTCAACTATGGTTTTACTCGTTTTC-TGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATG
* **
97183216 GTATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATG
*
97183263 GTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCAGGTTG-C---
1 GTATCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATG
* * *
97183305 --ATCTTTCAACCATGGTCTTATTCA-TTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATG
* * *
97183349 GTATCTTTCAACCATGGTCTTACACATTTTCATATCACGTTGCCATG
1 GTATCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATG
97183396 CTAGCTGGAT
Statistics
Matches: 158, Mismatches: 14, Indels: 15
0.84 0.07 0.08
Matches are distributed among these distances:
40 36 0.23
41 1 0.01
45 1 0.01
46 61 0.39
47 59 0.37
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (47 bp):
GTATCTTTCAACCATGGTCTTACTCATTTTCATGTCATGTTGCCATG
Found at i:97183310 original size:40 final size:41
Alignment explanation
Indices: 97183265--97183391 Score: 157
Period size: 40 Copynumber: 3.0 Consensus size: 41
97183255 TTGCCATGGT
* *
97183265 ATCTTTCAACCATGGTCTTACTCATTTCATGTCAGGTTGC-
1 ATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCG
*
97183305 ATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGG
1 ATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTG-C---G
*
97183350 TATCTTTCAACCATGGTCTTACACATTTTCATATCACGTTGC
1 -ATCTTTCAACCATGGTCTTACTCA-TTTCATATCACGTTGC
97183392 CATGCTAGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
40 36 0.48
41 1 0.01
46 23 0.31
47 15 0.20
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (41 bp):
ATCTTTCAACCATGGTCTTACTCATTTCATATCACGTTGCG
Found at i:97183366 original size:86 final size:88
Alignment explanation
Indices: 97183218--97183391 Score: 271
Period size: 86 Copynumber: 2.0 Consensus size: 88
97183208 TTGCCATGGT
* * *
97183218 ATCTTTCAACCATGGTCTTATTCATTTTCCCGTCATGTTGCCATGGTATCTTTCAACCATGGTCT
1 ATCTTTCAACCATGGTCTTATTCATTTTCACATCACGTTGCCATGGTATCTTTCAACCATGGTCT
* * *
97183283 TACTCA-TTTCATGTCAGGTTGC
66 TACACATTTTCATATCACGTTGC
*
97183305 ATCTTTCAACCATGGTCTTATTCA-TTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCT
1 ATCTTTCAACCATGGTCTTATTCATTTTCACATCACGTTGCCATGGTATCTTTCAACCATGGTCT
97183369 TACACATTTTCATATCACGTTGC
66 TACACATTTTCATATCACGTTGC
97183392 CATGCTAGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
86 41 0.52
87 38 0.48
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.41
Consensus pattern (88 bp):
ATCTTTCAACCATGGTCTTATTCATTTTCACATCACGTTGCCATGGTATCTTTCAACCATGGTCT
TACACATTTTCATATCACGTTGC
Found at i:97188010 original size:13 final size:13
Alignment explanation
Indices: 97187992--97188019 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
97187982 TATATATATA
97187992 AAAGAAACAAAAG
1 AAAGAAACAAAAG
97188005 AAAGAAACAAAAG
1 AAAGAAACAAAAG
97188018 AA
1 AA
97188020 TAAAAGGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.14, T:0.00
Consensus pattern (13 bp):
AAAGAAACAAAAG
Found at i:97188845 original size:2 final size:2
Alignment explanation
Indices: 97188840--97188875 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
97188830 TATATATATA
97188840 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
97188876 AATGAGATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:97189049 original size:15 final size:15
Alignment explanation
Indices: 97189031--97189087 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
97189021 TATCTGTTTT
*
97189031 ATTGAATTTCTATTG
1 ATTGAATTTATATTG
* * *
97189046 ATTGAAATTATTTTA
1 ATTGAATTTATATTG
97189061 ATTGAATTTATATTG
1 ATTGAATTTATATTG
97189076 ATTGAA-TTATAT
1 ATTGAATTTATAT
97189088 AATATATATG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
14 6 0.17
15 29 0.83
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:97189066 original size:30 final size:28
Alignment explanation
Indices: 97189027--97189085 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
97189017 TGAATATCTG
*
97189027 TTTTATTGAATTTCTATTGATTGAAATTA
1 TTTTATTGAATTTATATTGATTG-AATTA
97189056 TTTTAATTGAATTTATATTGATTGAATTA
1 TTTT-ATTGAATTTATATTGATTGAATTA
97189085 T
1 T
97189086 ATAATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 10 0.36
30 18 0.64
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (28 bp):
TTTTATTGAATTTATATTGATTGAATTA
Found at i:97189434 original size:21 final size:22
Alignment explanation
Indices: 97189375--97189440 Score: 89
Period size: 21 Copynumber: 3.0 Consensus size: 22
97189365 GCTTTACCGA
97189375 TTAGGCACTTTATGTGTCGTAT
1 TTAGGCACTTTATGTGTCGTAT
* **
97189397 TTCAGGCACCTCGTGTGTCGT-T
1 TT-AGGCACTTTATGTGTCGTAT
97189419 TTAGGCACTTTATGTGTCGTAT
1 TTAGGCACTTTATGTGTCGTAT
97189441 ACTGATCAGG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 15 0.42
22 6 0.17
23 15 0.42
ACGTcount: A:0.15, C:0.18, G:0.24, T:0.42
Consensus pattern (22 bp):
TTAGGCACTTTATGTGTCGTAT
Found at i:97189623 original size:18 final size:19
Alignment explanation
Indices: 97189602--97189642 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
97189592 AATGAAATGA
97189602 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
97189620 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
97189639 GAAA
1 GAAA
97189643 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:97190825 original size:23 final size:23
Alignment explanation
Indices: 97190794--97190851 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
97190784 CTAAATAACT
* *
97190794 CAAACATTCAATCTAACCTTTAAA
1 CAAAAATTCAATCCAACC-TTAAA
*
97190818 -AAAAATTCAATCCAATCTTAAA
1 CAAAAATTCAATCCAACCTTAAA
*
97190840 CAAACATTCAAT
1 CAAAAATTCAAT
97190852 ACATAATTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
22 5 0.17
23 24 0.83
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (23 bp):
CAAAAATTCAATCCAACCTTAAA
Found at i:97195291 original size:6 final size:6
Alignment explanation
Indices: 97195282--97195346 Score: 130
Period size: 6 Copynumber: 10.8 Consensus size: 6
97195272 AGGCTTAGGC
97195282 CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG
1 CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG CTATGG
97195330 CTATGG CTATGG CTATG
1 CTATGG CTATGG CTATG
97195347 AGTAGTGTAA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 59 1.00
ACGTcount: A:0.17, C:0.17, G:0.32, T:0.34
Consensus pattern (6 bp):
CTATGG
Found at i:97197362 original size:24 final size:24
Alignment explanation
Indices: 97197304--97197362 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
97197294 CATAATTGTG
* *
97197304 AAATAATAATAAAATAGTAGAAAA
1 AAATAACAAAAAAATAGTAGAAAA
*
97197328 AAACAACAAAAAAATAGTAAGAAAA
1 AAATAACAAAAAAATAGT-AGAAAA
*
97197353 TAATAA-AAAA
1 AAATAACAAAA
97197363 GCAAAAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 19 0.66
25 10 0.34
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (24 bp):
AAATAACAAAAAAATAGTAGAAAA
Found at i:97197371 original size:32 final size:31
Alignment explanation
Indices: 97197324--97197387 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 31
97197314 AAAATAGTAG
97197324 AAAAAAACAACAAAAAAATAGTAAGAAAATAAT
1 AAAAAAACAACAAAAAAATAGTAA-AAAA-AAT
*
97197357 AAAAAAGCAA-AAAAAAATAGTAAAAAAAAT
1 AAAAAAACAACAAAAAAATAGTAAAAAAAAT
97197387 A
1 A
97197388 GCAATTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 4 0.13
31 4 0.13
32 13 0.43
33 9 0.30
ACGTcount: A:0.78, C:0.05, G:0.06, T:0.11
Consensus pattern (31 bp):
AAAAAAACAACAAAAAAATAGTAAAAAAAAT
Found at i:97198029 original size:59 final size:59
Alignment explanation
Indices: 97197966--97198079 Score: 156
Period size: 59 Copynumber: 1.9 Consensus size: 59
97197956 TTATTAGTTT
* * * ** *
97197966 AAATTAGGCCTTAAACTTGATAACTGTTCTTACATTGGGACCTAAACTTTTTTTTGTCC
1 AAATTAGGCCATAAACTTGACAAATGTTCCCACATTGGAACCTAAACTTTTTTTTGTCC
* *
97198025 AAATTAGGCCATAAACTTGACAAATGTTCCCACATTGGAACTTGAACTTTTTTTT
1 AAATTAGGCCATAAACTTGACAAATGTTCCCACATTGGAACCTAAACTTTTTTTT
97198080 TATCTAAGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 47 1.00
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39
Consensus pattern (59 bp):
AAATTAGGCCATAAACTTGACAAATGTTCCCACATTGGAACCTAAACTTTTTTTTGTCC
Found at i:97201088 original size:46 final size:44
Alignment explanation
Indices: 97200984--97201091 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
97200974 TGTCTTTGAC
** * * *
97200984 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
97201028 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
97201074 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
97201092 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:97207231 original size:46 final size:44
Alignment explanation
Indices: 97207127--97207234 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
97207117 TGTCTTTGAC
** * * *
97207127 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
97207171 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
97207217 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
97207235 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:97213947 original size:17 final size:17
Alignment explanation
Indices: 97213925--97213959 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97213915 AGATCTACAG
97213925 AAGCCTAATGCCTCAAT
1 AAGCCTAATGCCTCAAT
*
97213942 AAGCCTAGTGCCTCAAT
1 AAGCCTAATGCCTCAAT
97213959 A
1 A
97213960 GTATCACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (17 bp):
AAGCCTAATGCCTCAAT
Found at i:97216706 original size:22 final size:21
Alignment explanation
Indices: 97216678--97216720 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
97216668 AAAATGATAG
97216678 TTTAAATATTA-AAATTGAATTT
1 TTTAAATA-TACAAATT-AATTT
97216700 TTTAAATATACAAATTAATTT
1 TTTAAATATACAAATTAATTT
97216721 AGATTATTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TTTAAATATACAAATTAATTT
Found at i:97217542 original size:3 final size:3
Alignment explanation
Indices: 97217534--97217577 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
97217524 ATTCCCACTT
97217534 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
97217578 TGGCCTTAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:97218544 original size:21 final size:21
Alignment explanation
Indices: 97218515--97218557 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
97218505 ATGAACAATA
97218515 TAATGATTTT-ACATTTTAACT
1 TAATGATTTTGA-ATTTTAACT
*
97218536 TAATTATTTTGAATTTTAACT
1 TAATGATTTTGAATTTTAACT
97218557 T
1 T
97218558 TTAAAAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (21 bp):
TAATGATTTTGAATTTTAACT
Found at i:97227858 original size:46 final size:46
Alignment explanation
Indices: 97227791--97227965 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
97227781 TGTAACCCGC
97227791 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
97227837 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
97227887 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
97227930 CCATAAGTGAACTCGGACTCAACTCGACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
97227966 ATGCTCAACC
Statistics
Matches: 108, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:97227911 original size:93 final size:93
Alignment explanation
Indices: 97227799--97227969 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
97227789 GCCCATAAGT
** *
97227799 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97227864 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
97227892 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCGA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
97227957 CGAGTTCGGATGC
66 CGAGCTCGGATGC
97227970 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:97249609 original size:9 final size:9
Alignment explanation
Indices: 97249595--97249636 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
97249585 AACCCAAAAT
97249595 AAAAAATAA
1 AAAAAATAA
97249604 AAAAAATAA
1 AAAAAATAA
97249613 AAAAAATGAA
1 AAAAAAT-AA
* *
97249623 GAAAAAGAA
1 AAAAAATAA
97249632 AAAAA
1 AAAAA
97249637 CCTAACCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
9 22 0.76
10 7 0.24
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (9 bp):
AAAAAATAA
Found at i:97249618 original size:18 final size:19
Alignment explanation
Indices: 97249595--97249636 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
97249585 AACCCAAAAT
*
97249595 AAAAAAT-AAAAAAAATAA
1 AAAAAATGAAAAAAAAGAA
*
97249613 AAAAAATGAAGAAAAAGAA
1 AAAAAATGAAAAAAAAGAA
97249632 AAAAA
1 AAAAA
97249637 CCTAACCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (19 bp):
AAAAAATGAAAAAAAAGAA
Found at i:97250547 original size:2 final size:2
Alignment explanation
Indices: 97250540--97250569 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
97250530 TCTGTTTATG
*
97250540 TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
97250570 ATTTACCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:97250865 original size:19 final size:19
Alignment explanation
Indices: 97250838--97250875 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
97250828 TTGAGATTGC
*
97250838 CAACTTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
97250857 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
97250876 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:97250967 original size:7 final size:7
Alignment explanation
Indices: 97250955--97250979 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
97250945 CCCTTTTAAA
97250955 AAAAAAT
1 AAAAAAT
97250962 AAAAAAT
1 AAAAAAT
97250969 AAAAAAT
1 AAAAAAT
97250976 AAAA
1 AAAA
97250980 TTTCAAAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:97254847 original size:20 final size:20
Alignment explanation
Indices: 97254822--97254861 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
97254812 GCCCAAAAAT
* *
97254822 GTTTAAAATGCCTTAAATGA
1 GTTTAAAATGACTGAAATGA
*
97254842 GTTTAATATGACTGAAATGA
1 GTTTAAAATGACTGAAATGA
97254862 AGTGCAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.35
Consensus pattern (20 bp):
GTTTAAAATGACTGAAATGA
Found at i:97258098 original size:20 final size:19
Alignment explanation
Indices: 97258057--97258102 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
97258047 AATATTTTTT
*
97258057 AAATTATTAAAAACCAATA
1 AAATTATTAAAAACAAATA
97258076 AAATTATTAAAAA-AAATTCA
1 AAATTATTAAAAACAAA-T-A
97258096 AAATTAT
1 AAATTAT
97258103 CTTGGACAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 2 0.08
19 14 0.58
20 8 0.33
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATTATTAAAAACAAATA
Found at i:97258371 original size:52 final size:52
Alignment explanation
Indices: 97258314--97258420 Score: 214
Period size: 52 Copynumber: 2.1 Consensus size: 52
97258304 CTTATTGGAG
97258314 AGTAAAAATATTTGAGTACATTACTAATAAAGTTCTTAGACTCCACAAGTAA
1 AGTAAAAATATTTGAGTACATTACTAATAAAGTTCTTAGACTCCACAAGTAA
97258366 AGTAAAAATATTTGAGTACATTACTAATAAAGTTCTTAGACTCCACAAGTAA
1 AGTAAAAATATTTGAGTACATTACTAATAAAGTTCTTAGACTCCACAAGTAA
97258418 AGT
1 AGT
97258421 TAGGGTGATG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 55 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (52 bp):
AGTAAAAATATTTGAGTACATTACTAATAAAGTTCTTAGACTCCACAAGTAA
Found at i:97258396 original size:25 final size:25
Alignment explanation
Indices: 97258316--97258396 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
97258306 TATTGGAGAG
97258316 TAAAAATATTTGAGTACATTACTAA
1 TAAAAATATTTGAGTACATTACTAA
** * * * * ** *
97258341 TAAAGTTCTTAGACTCCACAAGTAAA
1 TAAAAATATTTGAGTACATTACT-AA
97258367 GTAAAAATATTTGAGTACATTACTAA
1 -TAAAAATATTTGAGTACATTACTAA
97258393 TAAA
1 TAAA
97258397 GTTCTTAGAC
Statistics
Matches: 36, Mismatches: 18, Indels: 4
0.62 0.31 0.07
Matches are distributed among these distances:
25 18 0.50
26 4 0.11
27 14 0.39
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.32
Consensus pattern (25 bp):
TAAAAATATTTGAGTACATTACTAA
Found at i:97258475 original size:15 final size:17
Alignment explanation
Indices: 97258455--97258486 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
97258445 AGATATAATA
97258455 AAATAT-TAAAA-AAAT
1 AAATATATAAAAGAAAT
97258470 AAATATATAAAAGAAAT
1 AAATATATAAAAGAAAT
97258487 GAGACACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 5 0.33
17 4 0.27
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (17 bp):
AAATATATAAAAGAAAT
Found at i:97258783 original size:19 final size:18
Alignment explanation
Indices: 97258754--97258789 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
97258744 GGGACGTTAA
*
97258754 TAGTTTTTAAATAAATTT
1 TAGTTTTTAAAAAAATTT
97258772 TAGTTATTTAAAAAAATT
1 TAGTT-TTTAAAAAAATT
97258790 CTCATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (18 bp):
TAGTTTTTAAAAAAATTT
Found at i:97258897 original size:21 final size:21
Alignment explanation
Indices: 97258873--97258923 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
97258863 ATTTGATCAA
* *
97258873 TTTTAATAATTTTC-TATAATG
1 TTTTTATAATTCTCATA-AATG
97258894 TTTTTATAATTCTCATAAATG
1 TTTTTATAATTCTCATAAATG
97258915 TTTTTATAA
1 TTTTTATAA
97258924 ATATTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (21 bp):
TTTTTATAATTCTCATAAATG
Found at i:97259495 original size:6 final size:6
Alignment explanation
Indices: 97259484--97259510 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
97259474 GGAAGGGCGA
97259484 CTGAGG CTGAGG CTGAGG CTGAGG CTG
1 CTGAGG CTGAGG CTGAGG CTGAGG CTG
97259511 GGGTATAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.19, G:0.48, T:0.19
Consensus pattern (6 bp):
CTGAGG
Found at i:97263809 original size:23 final size:21
Alignment explanation
Indices: 97263766--97263804 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
97263756 AAAAATACTA
*
97263766 AAAAATCATAAAAAATTATTT
1 AAAAATCATAAAAAATAATTT
*
97263787 AAAAATC-TAATAAATAAT
1 AAAAATCATAAAAAATAAT
97263805 AATTTTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAATCATAAAAAATAATTT
Found at i:97264226 original size:14 final size:14
Alignment explanation
Indices: 97264207--97264236 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
97264197 TTTTAGTTTG
*
97264207 ATAAAAATAATAAA
1 ATAAAAATAAAAAA
97264221 ATAAAAATAAAAAA
1 ATAAAAATAAAAAA
97264235 AT
1 AT
97264237 GGTTCAATCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
ATAAAAATAAAAAA
Found at i:97264349 original size:20 final size:20
Alignment explanation
Indices: 97264324--97264380 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
97264314 CAGTCCAGTT
*
97264324 TAAGTTTTTATAATTTTTTA
1 TAAGTTTTTATAATTTTTAA
*
97264344 TAAGTTTATATCAA-TTTTAA
1 TAAGTTTTTAT-AATTTTTAA
97264364 T-A-TTTTTATAATTTTTA
1 TAAGTTTTTATAATTTTTA
97264381 TTGCATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
17 2 0.06
18 11 0.34
19 1 0.03
20 16 0.50
21 2 0.06
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (20 bp):
TAAGTTTTTATAATTTTTAA
Found at i:97264377 original size:9 final size:9
Alignment explanation
Indices: 97264328--97264505 Score: 82
Period size: 9 Copynumber: 19.0 Consensus size: 9
97264318 CCAGTTTAAG
97264328 TTTTTATAA
1 TTTTTATAA
97264337 TTTTTTATAA
1 -TTTTTATAA
*
97264347 GTTTATATCAA
1 -TTTTTAT-AA
*
97264358 TTTTAAT-A
1 TTTTTATAA
97264366 TTTTTATAA
1 TTTTTATAA
*
97264375 TTTTTATTGCA
1 TTTTTA-T-AA
97264386 TTTTTA-AGA
1 TTTTTATA-A
* *
97264395 CTTCTAATACA
1 -TTTTTATA-A
97264406 TTTTT-TAA
1 TTTTTATAA
*
97264414 -ATTTA-AA
1 TTTTTATAA
*
97264421 TATTTTAAATCA
1 T-TTTT--ATAA
97264433 TTTTTATAA
1 TTTTTATAA
*
97264442 ATTTTATAA
1 TTTTTATAA
*
97264451 TTTATTATAG
1 TTT-TTATAA
97264461 TTTGTTAT-A
1 TTT-TTATAA
97264470 TTTATTAT-A
1 TTT-TTATAA
97264479 TTTTTATAA
1 TTTTTATAA
*
97264488 TATTTATAA
1 TTTTTATAA
*
97264497 TTTTAATAA
1 TTTTTATAA
97264506 GTTCATATCA
Statistics
Matches: 128, Mismatches: 25, Indels: 31
0.70 0.14 0.17
Matches are distributed among these distances:
7 5 0.04
8 12 0.09
9 53 0.41
10 40 0.31
11 16 0.12
12 2 0.02
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:97264390 original size:29 final size:27
Alignment explanation
Indices: 97264329--97264392 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
97264319 CAGTTTAAGT
97264329 TTTTATAATTTTTTATAAGTTTATATCA
1 TTTT-TAATTTTTTATAAGTTTATATCA
* *
97264357 ATTTTAATATTTTTATAA-TTTTTATTGCA
1 TTTTTAAT-TTTTTATAAGTTTATA-T-CA
97264386 TTTTTAA
1 TTTTTAA
97264393 GACTTCTAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 9 0.30
28 13 0.43
29 8 0.27
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTTAATTTTTTATAAGTTTATATCA
Found at i:97264494 original size:17 final size:18
Alignment explanation
Indices: 97264443--97264501 Score: 68
Period size: 17 Copynumber: 3.3 Consensus size: 18
97264433 TTTTTATAAA
97264443 TTTTATAATTTATTATAGT
1 TTTTATAATTTATTATA-T
97264462 TTGTTAT-ATTTATTATAT
1 TT-TTATAATTTATTATAT
* *
97264480 TTTTATAATAT-TTATAA
1 TTTTATAATTTATTATAT
97264497 TTTTA
1 TTTTA
97264502 ATAAGTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
17 14 0.39
18 6 0.17
19 12 0.33
20 4 0.11
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTTATAATTTATTATAT
Found at i:97264494 original size:20 final size:19
Alignment explanation
Indices: 97264445--97264486 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
97264435 TTTATAAATT
97264445 TTATAATTTATTATAGTTTG
1 TTAT-ATTTATTATAGTTTG
97264465 TTATATTTATTATA-TTT-
1 TTATATTTATTATAGTTTG
97264482 TTATA
1 TTATA
97264487 ATATTTATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 3 0.14
19 10 0.45
20 4 0.18
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (19 bp):
TTATATTTATTATAGTTTG
Found at i:97265175 original size:11 final size:11
Alignment explanation
Indices: 97265148--97265207 Score: 52
Period size: 11 Copynumber: 5.5 Consensus size: 11
97265138 TTCCCTACAT
* *
97265148 TGTTTTGTTAT
1 TGTTTTGCTAC
97265159 TG-TTTGCTAC
1 TGTTTTGCTAC
97265169 TGTTTTGCT-C
1 TGTTTTGCTAC
*
97265179 TTTTTTTGCTAC
1 -TGTTTTGCTAC
*
97265191 TGTATTGCTAC
1 TGTTTTGCTAC
*
97265202 TATTTT
1 TGTTTT
97265208 ATTATTATTG
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
10 9 0.23
11 29 0.74
12 1 0.03
ACGTcount: A:0.10, C:0.13, G:0.15, T:0.62
Consensus pattern (11 bp):
TGTTTTGCTAC
Found at i:97265207 original size:22 final size:22
Alignment explanation
Indices: 97265161--97265207 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
97265151 TTTGTTATTG
* *
97265161 TTTGCTACTGTTTTGCTCTTTT
1 TTTGCTACTGTATTGCTCTTAT
97265183 TTTGCTACTGTATTGCTAC-TAT
1 TTTGCTACTGTATTGCT-CTTAT
97265205 TTT
1 TTT
97265208 ATTATTATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.11, C:0.17, G:0.13, T:0.60
Consensus pattern (22 bp):
TTTGCTACTGTATTGCTCTTAT
Found at i:97265263 original size:18 final size:19
Alignment explanation
Indices: 97265224--97265264 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
97265214 ATTGTTAAGA
*
97265224 TATTGTATAATTCTTATTT
1 TATTGTATAATTCTTATAT
97265243 TATTGT-TAATT-TTACTAT
1 TATTGTATAATTCTTA-TAT
97265261 TATT
1 TATT
97265265 TTAGAAGCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 3 0.15
18 11 0.55
19 6 0.30
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.63
Consensus pattern (19 bp):
TATTGTATAATTCTTATAT
Found at i:97265779 original size:2 final size:2
Alignment explanation
Indices: 97265772--97265796 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
97265762 TGATGATTAT
97265772 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
97265797 TAATTATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:97266220 original size:21 final size:23
Alignment explanation
Indices: 97266189--97266230 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
97266179 AAAAAAGAAA
*
97266189 ATTTAAAATTATG-ATATTTTGG
1 ATTTAAAATTAAGTATATTTTGG
97266211 ATTT-AAATTAAGTATATTTT
1 ATTTAAAATTAAGTATATTTT
97266231 ACTTTTGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (23 bp):
ATTTAAAATTAAGTATATTTTGG
Found at i:97270940 original size:17 final size:17
Alignment explanation
Indices: 97270918--97270965 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 17
97270908 GAAATATTTA
97270918 TTTTAATTTTTTAGTAT
1 TTTTAATTTTTTAGTAT
* *
97270935 TTTTAATGTATTA-TAT
1 TTTTAATTTTTTAGTAT
97270951 TTTT-ATTTTTT-GTAT
1 TTTTAATTTTTTAGTAT
97270966 AAAAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 8 0.31
16 7 0.27
17 11 0.42
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTTAATTTTTTAGTAT
Found at i:97277924 original size:21 final size:21
Alignment explanation
Indices: 97277898--97277945 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
97277888 AAATAAAAGA
* *
97277898 AAAAGAATAAAGAAAAGAAAC
1 AAAAGAACAAAGAAAAAAAAC
97277919 AAAAGAACAAAGAAAAAAAAC
1 AAAAGAACAAAGAAAAAAAAC
97277940 AGAAAG
1 A-AAAG
97277946 CAATCAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.77, C:0.06, G:0.15, T:0.02
Consensus pattern (21 bp):
AAAAGAACAAAGAAAAAAAAC
Found at i:97277943 original size:27 final size:27
Alignment explanation
Indices: 97277883--97277944 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
97277873 ATTAGTAACT
* *
97277883 AAAACAAATAAAAGAAAAAGAATAAAG
1 AAAAGAAACAAAAGAAAAAGAATAAAG
97277910 AAAAGAAACAAAAGAACAAAGAA-AAA-
1 AAAAGAAACAAAAGAA-AAAGAATAAAG
97277936 AAACAGAAA
1 AAA-AGAAA
97277945 GCAATCAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 3 0.10
27 22 0.71
28 6 0.19
ACGTcount: A:0.79, C:0.06, G:0.11, T:0.03
Consensus pattern (27 bp):
AAAAGAAACAAAAGAAAAAGAATAAAG
Found at i:97284874 original size:51 final size:49
Alignment explanation
Indices: 97284801--97284897 Score: 176
Period size: 51 Copynumber: 1.9 Consensus size: 49
97284791 AAGTGCATGT
97284801 ATGATTTATTGGTCACCAGATACGGATAGAGTCTGTAGGACTTGCTAATGC
1 ATGATTTATTGGTCACCAGATACGGAT--AGTCTGTAGGACTTGCTAATGC
97284852 ATGATTTATTGGTCACCAGATACGGATAGTCTGTAGGACTTGCTAA
1 ATGATTTATTGGTCACCAGATACGGATAGTCTGTAGGACTTGCTAA
97284898 CTGATATTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
49 19 0.41
51 27 0.59
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (49 bp):
ATGATTTATTGGTCACCAGATACGGATAGTCTGTAGGACTTGCTAATGC
Found at i:97294589 original size:13 final size:13
Alignment explanation
Indices: 97294573--97294606 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
97294563 TAAATTATAA
*
97294573 ATTATTATTAACT
1 ATTATTATTAAAT
97294586 ATTATTATTAAAT
1 ATTATTATTAAAT
*
97294599 AATATTAT
1 ATTATTAT
97294607 ATATATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATTATTAAAT
Found at i:97294660 original size:17 final size:17
Alignment explanation
Indices: 97294638--97294672 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
97294628 AAATGAAGAA
*
97294638 AAAGAATAAAAAGAAAC
1 AAAGAAGAAAAAGAAAC
*
97294655 AAAGAAGAATAAGAAAC
1 AAAGAAGAAAAAGAAAC
97294672 A
1 A
97294673 GAGAGCATTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.14, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAGAAAC
Found at i:97297261 original size:2 final size:2
Alignment explanation
Indices: 97297251--97297285 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
97297241 AAAAGTGTGT
*
97297251 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
97297286 TACTATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:97298896 original size:5 final size:5
Alignment explanation
Indices: 97298883--97298912 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
97298873 TAGTGTACAG
*
97298883 ACAAC ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
97298913 TGCCCCCAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (5 bp):
ACAAT
Found at i:97307687 original size:26 final size:24
Alignment explanation
Indices: 97307653--97307701 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
97307643 TAAATAAAAA
* *
97307653 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
97307679 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
97307702 TTAAAACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:97309666 original size:24 final size:23
Alignment explanation
Indices: 97309616--97309666 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 23
97309606 ATCTCAATTT
*
97309616 TATTGATGAAAATTTAAATTTAT
1 TATTGATGAAAATTTAAATTTAA
* * *
97309639 TATTAGATTAAAATTTTATTTTAA
1 TATT-GATGAAAATTTAAATTTAA
97309663 TATT
1 TATT
97309667 TTTTATGCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (23 bp):
TATTGATGAAAATTTAAATTTAA
Found at i:97311884 original size:25 final size:24
Alignment explanation
Indices: 97311828--97311886 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
97311818 TAAGTAGAAA
*
97311828 ATAAACAAATAATCATATTTATATT
1 ATAAA-AAATAATCATATTTATACT
* * *
97311853 CTCAAAAATATTCATATTTTATACT
1 ATAAAAAATAATCATA-TTTATACT
97311878 ATAAAAAAT
1 ATAAAAAAT
97311887 TTATTACAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.39
Consensus pattern (24 bp):
ATAAAAAATAATCATATTTATACT
Found at i:97312693 original size:17 final size:17
Alignment explanation
Indices: 97312661--97312693 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
97312651 TGCACATATT
97312661 AAATAAAATTTCATTTG
1 AAATAAAATTTCATTTG
97312678 AAATGAAAATTT-ATTT
1 AAAT-AAAATTTCATTT
97312694 CAACCAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (17 bp):
AAATAAAATTTCATTTG
Found at i:97317341 original size:42 final size:42
Alignment explanation
Indices: 97317281--97317377 Score: 99
Period size: 42 Copynumber: 2.3 Consensus size: 42
97317271 CGGAAATCTG
** **
97317281 TAAGGGTTAAAAACAAGCTCGTAAGAGCTGAA-TGGAAACGC-A
1 TAAGGGTTAAACTCAAGCTCAAAAGAGCTGAAGT-GAAAC-CTA
* *
97317323 TAAGGGTTAAACTGAAGCTCAAAAGAGCTTAAGTGAAACCTA
1 TAAGGGTTAAACTCAAGCTCAAAAGAGCTGAAGTGAAACCTA
*
97317365 GAAGGGTTAAACT
1 TAAGGGTTAAACT
97317378 AAAACTCATA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.02
42 44 0.96
43 1 0.02
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (42 bp):
TAAGGGTTAAACTCAAGCTCAAAAGAGCTGAAGTGAAACCTA
Found at i:97319297 original size:31 final size:29
Alignment explanation
Indices: 97319262--97319322 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
97319252 TTAATGATCG
97319262 AATTACATATCCCAAAATAATTTGTTGCCAA
1 AATTACA-A-CCCAAAATAATTTGTTGCCAA
* * *
97319293 AATTACAACTCAAGATAATTTGTTGTCAA
1 AATTACAACCCAAAATAATTTGTTGCCAA
97319322 A
1 A
97319323 TTTTACCAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 19 0.70
30 1 0.04
31 7 0.26
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (29 bp):
AATTACAACCCAAAATAATTTGTTGCCAA
Found at i:97319313 original size:29 final size:31
Alignment explanation
Indices: 97319278--97319336 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 31
97319268 ATATCCCAAA
97319278 ATAATTTGTTGCCAAA-ATTA-CAACTCAAG
1 ATAATTTGTTGCCAAATATTACCAACTCAAG
* *
97319307 ATAATTTGTTGTCAAATTTTACCAACTCAA
1 ATAATTTGTTGCCAAATATTACCAACTCAA
97319337 ACATGACAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 15 0.58
30 3 0.12
31 8 0.31
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (31 bp):
ATAATTTGTTGCCAAATATTACCAACTCAAG
Found at i:97324617 original size:10 final size:10
Alignment explanation
Indices: 97324602--97324626 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
97324592 TCAAGTTTTA
97324602 TTTTTTCTGT
1 TTTTTTCTGT
97324612 TTTTTTCTGT
1 TTTTTTCTGT
97324622 TTTTT
1 TTTTT
97324627 GTAGTGGCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (10 bp):
TTTTTTCTGT
Found at i:97326846 original size:25 final size:25
Alignment explanation
Indices: 97326801--97327081 Score: 61
Period size: 25 Copynumber: 11.0 Consensus size: 25
97326791 AATCTAACCC
* *
97326801 TATATATTTATTAT-TATTATTATTA
1 TATATATATATTTTATATTATTA-TA
*
97326826 TATATATATATATTTTATATTGTTAT-
1 T--ATATATATATTTTATATTATTATA
* * * ** *
97326852 T-TGT-TTTATTTAACCTTATT-TT
1 TATATATATATTTTATATTATTATA
* *
97326874 TATATTATATATTATATAATTATTTTA
1 TATA-TATATATTTTAT-ATTATTATA
*
97326901 T-TATATAT-TATTTACATTATTAT-
1 TATATATATAT-TTTATATTATTATA
* * *
97326924 TATTTATTATATATTACT-TTATTATT
1 TATATA-TATATTTTA-TATTATTATA
97326950 TATATAT-TATTATTATATT-TTACT-
1 TATATATATATT-TTATATTATTA-TA
* *
97326974 TGTATTATATATTTAT-TAATATATATA
1 TATA-TATATATTT-TATATTAT-TATA
* * *
97327001 TAT-TATATTATTTTTTACTCTTATA
1 TATATATA-TATTTTATATTATTATA
*
97327026 TTATATATTATAATTATTTTATTA-TATA
1 -TATATA-TAT-ATT-TTATATTATTATA
* *
97327054 TTATTATGTCATTTTTTATATTATTATA
1 -TA-TATAT-ATATTTTATATTATTATA
97327082 CATTTTTATC
Statistics
Matches: 188, Mismatches: 34, Indels: 65
0.66 0.12 0.23
Matches are distributed among these distances:
21 1 0.01
22 12 0.06
23 4 0.02
24 22 0.12
25 51 0.27
26 33 0.18
27 28 0.15
28 26 0.14
29 11 0.06
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.62
Consensus pattern (25 bp):
TATATATATATTTTATATTATTATA
Found at i:97326902 original size:50 final size:52
Alignment explanation
Indices: 97326816--97327058 Score: 125
Period size: 50 Copynumber: 4.9 Consensus size: 52
97326806 ATTTATTATT
* ** * *
97326816 ATTATTATTATA-TATATA-TATATTTTATATTGTTATT-TGTTTTATTTAAC
1 ATTATTTTTATATTATATATTATATAATATATTGTTATTATATATTATTT-AC
*
97326866 CTTATTTTTATATTATATATTATATAAT-TATT-TTATTATATATTATTTAC
1 ATTATTTTTATATTATATATTATATAATATATTGTTATTATATATTATTTAC
* * *
97326916 ATTATTATTAT-TTAT-TA-TATAT--TACT-TTATTATTTATATATTATTATTAT
1 ATTATTTTTATATTATATATTATATAATA-TATTGTTA-TTATATATTA-T-TTAC
* * *
97326966 ATT-TTACTTGTATTATATATT-TATTAATATA-T-ATA-TATTATATTATTT--
1 ATTATT-TTTATATTATATATTATA-TAATATATTGTTATTA-TATATTATTTAC
* * *
97327014 TTTACTCTTATATTATATA-T-TATAAT-TATT-TTATTATATATTATT
1 ATTATTTTTATATTATATATTATATAATATATTGTTATTATATATTATT
97327059 ATGTCATTTT
Statistics
Matches: 156, Mismatches: 16, Indels: 46
0.72 0.07 0.21
Matches are distributed among these distances:
45 3 0.02
46 18 0.12
47 14 0.09
48 26 0.17
49 8 0.05
50 37 0.24
51 25 0.16
52 17 0.11
53 4 0.03
54 2 0.01
55 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (52 bp):
ATTATTTTTATATTATATATTATATAATATATTGTTATTATATATTATTTAC
Found at i:97326910 original size:30 final size:30
Alignment explanation
Indices: 97326874--97327057 Score: 158
Period size: 30 Copynumber: 6.3 Consensus size: 30
97326864 ACCTTATTTT
*
97326874 TATATTATATATTATATAATTATTTTATTA
1 TATATTATATATTATATTATTATTTTATTA
* *
97326904 TATATTATTTA-CATTATTATTA-TTTATTA
1 TATATTATATATTA-TATTATTATTTTATTA
*
97326933 TATATTACTTTATTAT-TTATATATTATTATTA
1 TATATTA-TATATTATATTAT-TATT-TTATTA
* *
97326965 TAT-TT-TA-CTTGTATTA-TATATTTATTA
1 TATATTATATATTATATTATTAT-TTTATTA
97326992 -ATATATATATATTATATTATT-TTTTACTCT-
1 TATAT-TATATATTATATTATTATTTTA-T-TA
97327022 TATATTATATATTATA--ATTATTTTATTA
1 TATATTATATATTATATTATTATTTTATTA
97327050 TATATTAT
1 TATATTAT
97327058 TATGTCATTT
Statistics
Matches: 127, Mismatches: 9, Indels: 38
0.73 0.05 0.22
Matches are distributed among these distances:
26 2 0.02
27 11 0.09
28 17 0.13
29 34 0.27
30 44 0.35
31 10 0.08
32 9 0.07
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (30 bp):
TATATTATATATTATATTATTATTTTATTA
Found at i:97326912 original size:41 final size:41
Alignment explanation
Indices: 97326867--97327077 Score: 146
Period size: 39 Copynumber: 5.4 Consensus size: 41
97326857 TTATTTAACC
*
97326867 TTATTTTTATATTATATATTATATAATTATTTTATTATATA
1 TTATTTTTATATTATATATTATATTATTATTTTATTATATA
* * *
97326908 TTA--TTTACATTAT-TATTAT-TTATTA-TATATTACTTTA
1 TTATTTTTATATTATATATTATATTATTATTTTATTA-TATA
* *
97326945 TTATTTATATATTAT-TATTATATT-TTACTTGTATTATATA
1 TTATTTTTATATTATATATTATATTATTA-TTTTATTATATA
* * * *
97326985 TT-TATTAATATATATATATTATATTATT-TTTTACTCT-TA
1 TTATTTTTATAT-TATATATTATATTATTATTTTATTATATA
* * *
97327024 -TA-TTATATATTATA-ATTATTTTATTA-TATATTAT-TA
1 TTATTTTTATATTATATATTATATTATTATTTTATTATATA
97327060 TGTCATTTTTTATATTAT
1 T-T-A-TTTTTATATTAT
97327078 TATACATTTT
Statistics
Matches: 132, Mismatches: 22, Indels: 32
0.71 0.12 0.17
Matches are distributed among these distances:
36 23 0.17
37 15 0.11
38 13 0.10
39 35 0.27
40 16 0.12
41 28 0.21
42 2 0.02
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.63
Consensus pattern (41 bp):
TTATTTTTATATTATATATTATATTATTATTTTATTATATA
Found at i:97326989 original size:44 final size:44
Alignment explanation
Indices: 97326916--97327104 Score: 142
Period size: 44 Copynumber: 4.1 Consensus size: 44
97326906 TATTATTTAC
*
97326916 ATTATTATTATTTA--TTA-TATATTACTTTATTAT-TTATATATT
1 ATTATTATTTTTTACTTTATTATA-TA-TTTATTATATTATATATT
*
97326958 ATTATTATATTTTACTTGTATTATATATTTATTAATATATATATATT
1 ATTATTATTTTTTACTT-TATTATATATTTATT-ATAT-TATATATT
97327005 A-TATTATTTTTTACTCTTATATTATATATTATAATTATTTTATTATATATT
1 ATTATTATTTTTTA--CTT-TATTATATATT-T-ATTA---TATTATATATT
* *
97327056 ATTATGTCATTTTTTA-TATTATTATACATTT-TTAT-CTATATATT
1 ATTAT-T-ATTTTTTACT-TTATTATATATTTATTATATTATATATT
97327100 ATTAT
1 ATTAT
97327105 CATTAAAGGT
Statistics
Matches: 123, Mismatches: 6, Indels: 34
0.75 0.04 0.21
Matches are distributed among these distances:
42 12 0.10
44 20 0.16
45 7 0.06
46 16 0.13
47 9 0.07
48 17 0.14
49 2 0.02
50 4 0.03
51 20 0.16
52 7 0.06
53 1 0.01
54 8 0.07
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (44 bp):
ATTATTATTTTTTACTTTATTATATATTTATTATATTATATATT
Found at i:97327054 original size:46 final size:44
Alignment explanation
Indices: 97326941--97327058 Score: 116
Period size: 46 Copynumber: 2.6 Consensus size: 44
97326931 TATATATTAC
* * *
97326941 TTTATTATTTATATATTAT-TATTATATTTTACTTGTATTATATA
1 TTTATTA-ATATATATTATATATTATTTTTTACTTATATTATATA
97326985 TTTATTAATATATATATATTATATTATTTTTTACTCTTATATTATATA
1 TTTATTAATATATAT-TA-TATATTATTTTTTA--CTTATATTATATA
*
97327033 -TTA-TAATTATTTTATTATATATTATT
1 TTTATTAA-TA-TATATTATATATTATT
97327059 ATGTCATTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 12
0.80 0.05 0.15
Matches are distributed among these distances:
43 7 0.11
44 9 0.14
45 1 0.02
46 23 0.37
47 7 0.11
48 16 0.25
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.63
Consensus pattern (44 bp):
TTTATTAATATATATTATATATTATTTTTTACTTATATTATATA
Found at i:97327069 original size:24 final size:22
Alignment explanation
Indices: 97327043--97327108 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 22
97327033 TTATAATTAT
97327043 TTTATTATATATTATTATGTCA-
1 TTTATTATATATTATTAT-TCAT
*
97327065 TTT-TT-TATATTATTATACATT
1 TTTATTATATATTATTATTCA-T
97327086 TTTATCTATATATTATTA-TCAT
1 TTTAT-TATATATTATTATTCAT
97327108 T
1 T
97327109 AAAGGTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 2 0.05
20 11 0.30
21 5 0.14
22 6 0.16
23 3 0.08
24 10 0.27
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (22 bp):
TTTATTATATATTATTATTCAT
Found at i:97327321 original size:19 final size:19
Alignment explanation
Indices: 97327297--97327335 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
97327287 ATTATAAATA
*
97327297 TAAATTCTTTTACAT-ATTT
1 TAAATT-TTATACATCATTT
97327316 TAAATTTTATACATCATTT
1 TAAATTTTATACATCATTT
97327335 T
1 T
97327336 TCTAAACCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.56
Consensus pattern (19 bp):
TAAATTTTATACATCATTT
Found at i:97327413 original size:30 final size:29
Alignment explanation
Indices: 97327357--97327415 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
97327347 ATATTTTATA
*
97327357 TTTTTTATAATTATTATTCTTATAAATAT
1 TTTTTTATAATTATTATTATTATAAATAT
*
97327386 TTTTTTATTATATATTA-TATTATTAAATAT
1 TTTTTTATAAT-TATTATTATTA-TAAATAT
97327416 CACATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 14 0.54
30 12 0.46
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (29 bp):
TTTTTTATAATTATTATTATTATAAATAT
Found at i:97329243 original size:13 final size:13
Alignment explanation
Indices: 97329225--97329249 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97329215 AGTATATTAA
97329225 TAAAATATTAAAG
1 TAAAATATTAAAG
97329238 TAAAATATTAAA
1 TAAAATATTAAA
97329250 ATATAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
TAAAATATTAAAG
Found at i:97336744 original size:14 final size:13
Alignment explanation
Indices: 97336720--97336754 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
97336710 TTTATCTAAA
*
97336720 TATTTTAAAAAAT
1 TATTTTTAAAAAT
97336733 TACTTTTTAAAAAT
1 TA-TTTTTAAAAAT
97336747 TATTTTTA
1 TATTTTTA
97336755 GTGAAACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTTTTAAAAAT
Found at i:97340176 original size:39 final size:39
Alignment explanation
Indices: 97340114--97340253 Score: 217
Period size: 39 Copynumber: 3.6 Consensus size: 39
97340104 ATCGTGATCT
* * * *
97340114 GAAGCCCGAAGTCTAGCTAAAGCACATAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
97340153 GATGCCCGAAGGCTAACTGAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
97340192 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
97340231 GAAGCACGAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
97340254 TCATCAGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 92 1.00
ACGTcount: A:0.38, C:0.24, G:0.26, T:0.13
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:97349349 original size:4 final size:4
Alignment explanation
Indices: 97349340--97349375 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
97349330 AACAATCTTA
97349340 TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG
97349376 AACTCGAATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:97352390 original size:21 final size:21
Alignment explanation
Indices: 97352364--97352449 Score: 100
Period size: 21 Copynumber: 4.1 Consensus size: 21
97352354 GGCTTTATCG
* *
97352364 ATCAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
97352385 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
*
97352406 ATCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
* * * *
97352427 TTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGT
97352448 AT
1 AT
97352450 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.16, C:0.22, G:0.26, T:0.36
Consensus pattern (21 bp):
ATCAGGCACCTCATGTGTCGT
Found at i:97357253 original size:5 final size:5
Alignment explanation
Indices: 97357243--97357267 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
97357233 TAAAAAATGT
97357243 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
97357268 TATTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:97360182 original size:44 final size:45
Alignment explanation
Indices: 97360092--97360220 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
97360082 GACAGAACGA
*
97360092 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
97360138 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
97360182 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
97360221 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:97367566 original size:44 final size:45
Alignment explanation
Indices: 97367476--97367604 Score: 152
Period size: 44 Copynumber: 2.8 Consensus size: 45
97367466 GACAGAACGA
*
97367476 AATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGG
* *
97367522 ATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
* ** * * *
97367566 AATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 AATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
97367605 CAGGATATTG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 36 0.51
45 1 0.01
46 33 0.47
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (45 bp):
AATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGG
Found at i:97375184 original size:133 final size:133
Alignment explanation
Indices: 97374944--97375567 Score: 824
Period size: 133 Copynumber: 4.7 Consensus size: 133
97374934 GATTACAGAT
* * * *
97374944 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGTTAAATATAGCAGATCTTATCTTCGC
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCT--ATAAACCAGATCTTATCTTCAC
* * * *
97375009 TGAGCAAGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
64 TGAGCAGGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGA
97375074 TTCCA
129 TTCCA
*
97375079 ATCATCAGCCTTATCTTCACTAAGCAGGAGTGAAGCAGGCTATAAACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTATAAACCAGATCTTATCTTCACTG
* * *
97375144 AGCAGGAGTGAAGCAGATCGAATTTTGATGAATCTTATCTCCACGTACCGACGATGGAACAGATT
66 AGCAGGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
97375209 CCA
131 CCA
* *
97375212 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAAGCTA-AATACCAGATCTTATCTTCACT
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTATAA-ACCAGATCTTATCTTCACT
* *
97375276 GAGCAGAAGTGAAGCAGATCGAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
65 GAGCAGGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
97375341 TCCA
130 TCCA
* * * *
97375345 ATCACCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTATATACTAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTATAAACCAGATCTTATCTTCACTG
* * * ** * * *
97375410 AGCAGGAGTGAAGCAGATCAAATTTT-AGCGAGTCTTATCTCTATATATCGGCAATGGAGTAGAT
66 AGCAGGAGTGAAGCAGATCAAATTTTGA-TGAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
*
97375474 TTCA
130 TCCA
** * * * * * *
97375478 GCCACCAACCTTATCTTCATTGAGCAGGAGTGAAGTAGGCTA-AACATACAGATCTTATCTTTAC
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTATAA-A-CCAGATCTTATCTTCAC
97375542 TGAGCAGGAGT-AACGCAGATCAAATT
64 TGAGCAGGAGTGAA-GCAGATCAAATT
97375568 ACAACAGATC
Statistics
Matches: 440, Mismatches: 43, Indels: 13
0.89 0.09 0.03
Matches are distributed among these distances:
132 4 0.01
133 359 0.82
134 38 0.09
135 39 0.09
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (133 bp):
ATCATCAGCCTTATCTTCACTGAGCAGGAGTGAAGCAGGCTATAAACCAGATCTTATCTTCACTG
AGCAGGAGTGAAGCAGATCAAATTTTGATGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
CCA
Found at i:97375415 original size:43 final size:43
Alignment explanation
Indices: 97375088--97375426 Score: 174
Period size: 43 Copynumber: 7.7 Consensus size: 43
97375078 AATCATCAGC
* * *
97375088 CTTATCTTCACTAAGCAGGAGTGAAGCAG-GCTATAAACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAGCTA-ATACCAGAT
* * * ***
97375131 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCGAATTTTGATGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAGCTAA-TACCA-G-AT
* * * * * * * *
97375177 CTTATCTCCAC-GTACCGACGA-TGGAACAGATTCCAATCATCAG-C
1 CTTATCTTCACTG-AGC-AGGAGTGGAGCAGA-GCTAAT-ACCAGAT
97375221 CTTATCTTCACTGAGCAGGAGTGGAGCA-AGCTAAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAGCT-AATACCAGAT
* * * * ***
97375264 CTTATCTTCACTGAGCAGAAGTGAAGCAGATCGAATTTTGATGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAGCTAA-TACCA-G-AT
* * * * * *
97375310 CTTATCTCCAC-GTA-CCGGCGATGGAGCAGATTCCAATCACCAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGA-GCTAAT-ACCAGAT
*
97375354 CTTATCTTCACTGAGCAGGAGTGGAGCAG-GCTATATACTAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGAGCTA-ATACCAGAT
*
97375397 CTTATCTTCACTGAGCAGGAGTGAAGCAGA
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGA
97375427 TCAAATTTTA
Statistics
Matches: 222, Mismatches: 49, Indels: 49
0.69 0.15 0.15
Matches are distributed among these distances:
42 11 0.05
43 94 0.42
44 44 0.20
45 13 0.06
46 46 0.21
47 14 0.06
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (43 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGAGCTAATACCAGAT
Found at i:97376773 original size:20 final size:19
Alignment explanation
Indices: 97376741--97376778 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
97376731 TCTTTTGGTA
97376741 CTATTATTATTAATCTATTG
1 CTATTATTATTAA-CTATTG
97376761 CTATT-TTATTTAACTATT
1 CTATTATTA-TTAACTATT
97376779 TTAGGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.58
Consensus pattern (19 bp):
CTATTATTATTAACTATTG
Found at i:97376988 original size:19 final size:19
Alignment explanation
Indices: 97376956--97377003 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
97376946 TATACGTTTT
* *
97376956 TTTTAAGTAAAACTAATTA
1 TTTTATGTATAACTAATTA
**
97376975 TTTTATGTATAACTTGTTA
1 TTTTATGTATAACTAATTA
*
97376994 TTATATGTAT
1 TTTTATGTAT
97377004 TACATTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.52
Consensus pattern (19 bp):
TTTTATGTATAACTAATTA
Found at i:97377258 original size:8 final size:8
Alignment explanation
Indices: 97377245--97377271 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
97377235 ATAAACCTAC
97377245 TTTATTAT
1 TTTATTAT
97377253 TTTATTAT
1 TTTATTAT
97377261 TTTATTAT
1 TTTATTAT
97377269 TTT
1 TTT
97377272 TATATACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTATTAT
Found at i:97378110 original size:18 final size:19
Alignment explanation
Indices: 97378087--97378130 Score: 72
Period size: 18 Copynumber: 2.3 Consensus size: 19
97378077 ATTCAAACAC
97378087 CAGAAAAGTAAAT-ATTTT
1 CAGAAAAGTAAATCATTTT
97378105 CAGAAAAGTAAATCATTTT
1 CAGAAAAGTAAATCATTTT
97378124 CTAGAAA
1 C-AGAAA
97378131 TCATTTTCCG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 13 0.54
19 6 0.25
20 5 0.21
ACGTcount: A:0.50, C:0.09, G:0.11, T:0.30
Consensus pattern (19 bp):
CAGAAAAGTAAATCATTTT
Found at i:97381819 original size:16 final size:16
Alignment explanation
Indices: 97381800--97381850 Score: 66
Period size: 16 Copynumber: 3.2 Consensus size: 16
97381790 GTTGGGTTAG
97381800 TTTCAAGTTCGAGTCA
1 TTTCAAGTTCGAGTCA
* * *
97381816 TTTCGAGTTTGAATCA
1 TTTCAAGTTCGAGTCA
*
97381832 TTTCATGTTCGAGTCA
1 TTTCAAGTTCGAGTCA
97381848 TTT
1 TTT
97381851 ATGTTTGGTA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.45
Consensus pattern (16 bp):
TTTCAAGTTCGAGTCA
Found at i:97382057 original size:19 final size:18
Alignment explanation
Indices: 97382011--97382067 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 18
97382001 TTAATTTTAA
97382011 AATAAAATTATATTAAAGTG
1 AATAAAATTAT-TTAAA-TG
97382031 AA-ACAAATTATTTAAATG
1 AATA-AAATTATTTAAATG
97382049 AGATAAAATTATTATAAAT
1 A-ATAAAATTATT-TAAAT
97382068 TTAATAATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
18 3 0.09
19 15 0.45
20 15 0.45
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (18 bp):
AATAAAATTATTTAAATG
Found at i:97385912 original size:84 final size:81
Alignment explanation
Indices: 97385751--97385914 Score: 240
Period size: 84 Copynumber: 2.0 Consensus size: 81
97385741 AAGAGAAATG
* **
97385751 GACTCCTGGAGAGGTAAAGGACTTCAATTATATGCTAATATATCTATTTATATTTTAAGATTGAG
1 GACTCCTGGAGAGGTAAAGGACTTCAATTATATGCTAATATATATATTTATATACTAAGATTGAG
97385816 TTAGAATCACTAGATC
66 TTAGAATCACTAGATC
97385832 GACTCCTGGAGAGGTAAAGGACTTCAA-TATATGCTAATACATATATATATATATATACTAAGAT
1 GACTCCTGGAGAGGTAAAGGACTTCAATTATATGCTAAT--ATATATAT-T-TATATACTAAGAT
* *
97385896 TGAGTTAGGATTACTAGAT
62 TGAGTTAGAATCACTAGAT
97385915 TTCAAGTAGC
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
80 11 0.15
81 27 0.36
82 7 0.09
83 1 0.01
84 28 0.38
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.34
Consensus pattern (81 bp):
GACTCCTGGAGAGGTAAAGGACTTCAATTATATGCTAATATATATATTTATATACTAAGATTGAG
TTAGAATCACTAGATC
Found at i:97393535 original size:33 final size:33
Alignment explanation
Indices: 97393493--97393558 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
97393483 CTCCCTCATA
*
97393493 TTTTTTTGGTATGCTCTCATAAATTTTGGCATG
1 TTTTTTTGGTATGCTCTCATAAACTTTGGCATG
*
97393526 TTTTTTTGGTATGTTCTCATAAACTTTGGCATG
1 TTTTTTTGGTATGCTCTCATAAACTTTGGCATG
97393559 CTTTCAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.18, C:0.12, G:0.18, T:0.52
Consensus pattern (33 bp):
TTTTTTTGGTATGCTCTCATAAACTTTGGCATG
Found at i:97397120 original size:31 final size:32
Alignment explanation
Indices: 97397082--97397161 Score: 153
Period size: 31 Copynumber: 2.5 Consensus size: 32
97397072 TATAAAATCA
97397082 AATGGAGTAATTTCTTGCACTTTTAT-CCACT
1 AATGGAGTAATTTCTTGCACTTTTATCCCACT
97397113 AATGGAGTAATTTCTTGCACTTTTATCCCACT
1 AATGGAGTAATTTCTTGCACTTTTATCCCACT
97397145 AATGGAGTAATTTCTTG
1 AATGGAGTAATTTCTTG
97397162 AAAAAAATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 26 0.54
32 22 0.46
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41
Consensus pattern (32 bp):
AATGGAGTAATTTCTTGCACTTTTATCCCACT
Found at i:97397519 original size:19 final size:20
Alignment explanation
Indices: 97397495--97397534 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
97397485 GACTTCAGTC
97397495 TGCAGAACAAAG-AATCATA
1 TGCAGAACAAAGCAATCATA
*
97397514 TGCAGACCAAAGCAATCATA
1 TGCAGAACAAAGCAATCATA
97397534 T
1 T
97397535 TCTACCTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.47, C:0.20, G:0.15, T:0.17
Consensus pattern (20 bp):
TGCAGAACAAAGCAATCATA
Found at i:97401106 original size:38 final size:38
Alignment explanation
Indices: 97401055--97401129 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
97401045 ACAAGGCATT
97401055 ACCTAAACCAATCTCAAGTCACCGAAACTCAATTCAAA
1 ACCTAAACCAATCTCAAGTCACCGAAACTCAATTCAAA
*
97401093 ACCTAAACCAATCTCAAGTCACCGAGACTCAATTCAA
1 ACCTAAACCAATCTCAAGTCACCGAAACTCAATTCAA
97401130 TCTTAAAACT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.43, C:0.32, G:0.07, T:0.19
Consensus pattern (38 bp):
ACCTAAACCAATCTCAAGTCACCGAAACTCAATTCAAA
Found at i:97402486 original size:47 final size:48
Alignment explanation
Indices: 97402412--97402675 Score: 237
Period size: 47 Copynumber: 5.6 Consensus size: 48
97402402 TGGGTAAAGT
*
97402412 GCCGATGCTATGTCCCAGACATAGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCGAA
** * *
97402459 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTA
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCATCTCGAA
* * *
97402507 GCCGATG-CATGTCCCAGACATGTCTTACACTGACTTA-CGA-CTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATC-ATCTCGAA
* * * * *
97402553 GCTGAT-ACATGTCCCAGACATGTCTTACACTAGTTC-TCGTCTC-AA
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAA
* * **
97402598 TGCCGATACCATGTCCCAGACATGGTCTTACACTGGCTC-TCATAAT-GTG
1 -GCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCATCAT-CTCGAA
97402647 GCCGATG-CATGTCCCAGACATGTCTTACA
1 GCCGATGCCATGTCCCAGACATGTCTTACA
97402676 TTAGCTTACA
Statistics
Matches: 179, Mismatches: 26, Indels: 25
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 68 0.38
47 81 0.45
48 28 0.16
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCATCATCTCGAA
Found at i:97402564 original size:46 final size:46
Alignment explanation
Indices: 97402467--97402675 Score: 187
Period size: 46 Copynumber: 4.5 Consensus size: 46
97402457 AAGTTGATGC
*
97402467 CATGTCCCAGACATGGTCTTACACTGAC-TATC-ATCTCGTA-GCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGACTTA-CGA-CTCG-AGGCCGATA
*
97402514 CATGTCCCAGACATGTCTTACACTGACTTACGACTCGAGGCTGATA
1 CATGTCCCAGACATGTCTTACACTGACTTACGACTCGAGGCCGATA
* * * * *
97402560 CATGTCCCAGACATGTCTTACACT-AGTTCTCGTCTCAATGCCGATA
1 CATGTCCCAGACATGTCTTACACTGACTT-ACGACTCGAGGCCGATA
* * * * *
97402606 CCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGACT-TAC-GACTCGAGGCCGATA
97402654 CATGTCCCAGACATGTCTTACA
1 CATGTCCCAGACATGTCTTACA
97402676 TTAGCTTACA
Statistics
Matches: 136, Mismatches: 17, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
45 4 0.03
46 67 0.49
47 45 0.33
48 17 0.12
49 2 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGACTTACGACTCGAGGCCGATA
Found at i:97402673 original size:140 final size:140
Alignment explanation
Indices: 97402421--97402675 Score: 372
Period size: 140 Copynumber: 1.8 Consensus size: 140
97402411 TGCCGATGCT
* ** *
97402421 ATGTCCCAGACATAGTCTTACACTGGCTCATATCTCAAGTTGATGCCATGTCCCAGACATGGTCT
1 ATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATACCATGTCCCAGACATGGTCT
*
97402486 TACACTGACTATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACTTACGACTCG
66 TACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACTTACGACTCG
97402551 AGGCTGATAC
131 AGGCTGATAC
* *
97402561 ATGTCCCAGACAT-GTCTTACACTAGTTC-TCGTCTCAATGCCGATACCATGTCCCAGACATGGT
1 ATGTCCCAGACATAGTCTTACACTAGCTCAT-ATCTCAA-GCCGATACCATGTCCCAGACATGGT
* * *
97402624 CTTACACTGGCTCTCATAAT-GTGGCCGATGCATGTCCCAGACATGTCTTACA
64 CTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAGACATGTCTTACA
97402676 TTAGCTTACA
Statistics
Matches: 102, Mismatches: 10, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
138 1 0.01
139 19 0.19
140 81 0.79
141 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (140 bp):
ATGTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATACCATGTCCCAGACATGGTCT
TACACTGACTATCATATCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGACTTACGACTCG
AGGCTGATAC
Found at i:97404780 original size:29 final size:24
Alignment explanation
Indices: 97404719--97404766 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
97404709 GAAAGTTGTG
97404719 CTAAAACTTAACTTTGTTCCCAAT
1 CTAAAACTTAACTTTGTTCCCAAT
97404743 CTAAAACTTAACTTTGTTCCCAAT
1 CTAAAACTTAACTTTGTTCCCAAT
97404767 GCCTATTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.04, T:0.38
Consensus pattern (24 bp):
CTAAAACTTAACTTTGTTCCCAAT
Found at i:97409706 original size:47 final size:45
Alignment explanation
Indices: 97409637--97409897 Score: 242
Period size: 47 Copynumber: 5.6 Consensus size: 45
97409627 CCGATACTAA
*
97409637 GTCCCAGACATAGTCTTACACTGGCTCATATCTCAAGTCGATGCCAT
1 GTCCCAGACAT-GTCTTACACTGGCTCATATCTCAAGCCGATG-CAT
* * *
97409684 GTCCCAGACATGGTCTTACACTGACT-ATCATCTCGTAGCCGATGTAT
1 GTCCCAGACAT-GTCTTACACTGGCTCAT-ATCTC-AAGCCGATGCAT
* * * * *
97409731 GTCCCAGACATGTCTTACACTGACTTACGA-CTCGAGGCTGATGCAT
1 GTCCCAGACATGTCTTACACTGGCTCA-TATCTC-AAGCCGATGCAT
* *
97409777 GTCCCAGACATGTCTTACACTAGCTCTTATCTCAATGCCGATGCCAT
1 GTCCCAGACATGTCTTACACTGGCTCATATCTCAA-GCCGATG-CAT
* * *
97409824 GTCCCAGACATGGTCTTACACTGGCTCTCATAATGT--GGCCGATTCAT
1 GTCCCAGACAT-GTCTTACACTGG--CTCAT-ATCTCAAGCCGATGCAT
*
97409871 GTCCCAGACATGTCTTACACTAGCTCA
1 GTCCCAGACATGTCTTACACTGGCTCA
97409898 CACTCAAATG
Statistics
Matches: 180, Mismatches: 23, Indels: 25
0.79 0.10 0.11
Matches are distributed among these distances:
44 4 0.02
45 2 0.01
46 71 0.39
47 72 0.40
48 24 0.13
50 4 0.02
51 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
GTCCCAGACATGTCTTACACTGGCTCATATCTCAAGCCGATGCAT
Found at i:97409889 original size:140 final size:140
Alignment explanation
Indices: 97409637--97409891 Score: 399
Period size: 140 Copynumber: 1.8 Consensus size: 140
97409627 CCGATACTAA
* *
97409637 GTCCCAGACATAGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTA
1 GTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGACATGGTCTTA
*
97409702 CACTGACTATCATCTCGTAGCCGATGTATGTCCCAGACATGTCTTACACTGACTTACGACTCGAG
66 CACTGACTATCATATCGTAGCCGATGTATGTCCCAGACATGTCTTACACTGACTTACGACTCGAG
97409767 GCTGATGCAT
131 GCTGATGCAT
*
97409777 GTCCCAGACAT-GTCTTACACTAGCTCTTATCTCAATGCCGATGCCATGTCCCAGACATGGTCTT
1 GTCCCAGACATAGTCTTACACTAGCTCATATCTCAA-GCCGATGCCATGTCCCAGACATGGTCTT
* * *
97409841 ACACTGGCTCTCATAAT-GTGGCCGAT-TCATGTCCCAGACATGTCTTACACT
65 ACACTGACTATCAT-ATCGTAGCCGATGT-ATGTCCCAGACATGTCTTACACT
97409892 AGCTCACACT
Statistics
Matches: 105, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
139 23 0.22
140 81 0.77
141 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (140 bp):
GTCCCAGACATAGTCTTACACTAGCTCATATCTCAAGCCGATGCCATGTCCCAGACATGGTCTTA
CACTGACTATCATATCGTAGCCGATGTATGTCCCAGACATGTCTTACACTGACTTACGACTCGAG
GCTGATGCAT
Found at i:97410286 original size:30 final size:30
Alignment explanation
Indices: 97410229--97410286 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97410219 AAATTCACAT
* *
97410229 CTTTGGTAAAATGACCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
*
97410259 CTTTGGCAAAATGACCATTTTATCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
97410287 TGCTCAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:97424417 original size:18 final size:18
Alignment explanation
Indices: 97424390--97424424 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97424380 ACTTGGTTCT
* *
97424390 TCTTCTTCGTCATCTTCG
1 TCTTCATCGTCACCTTCG
97424408 TCTTCATCGTCACCTTC
1 TCTTCATCGTCACCTTC
97424425 ACCCTCGGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.37, G:0.09, T:0.46
Consensus pattern (18 bp):
TCTTCATCGTCACCTTCG
Found at i:97433071 original size:39 final size:39
Alignment explanation
Indices: 97433028--97433165 Score: 136
Period size: 39 Copynumber: 3.5 Consensus size: 39
97433018 ATTCACTTTA
* * *
97433028 AAGCAAACATCACATTACACATATATTCACATAACATTT
1 AAGCAAATATCACAATACTCATATATTCACATAACATTT
**
97433067 AAGCATTTATCACAATACTCATATAATT-ACATAAC-TTT
1 AAGCAAATATCACAATACTCATAT-ATTCACATAACATTT
* * * * *
97433105 CAAGCACATATCGCAATACTTATATAATCACATAACATTC
1 -AAGCAAATATCACAATACTCATATATTCACATAACATTT
* *
97433145 AAGCATATATCGCAATACTCA
1 AAGCAAATATCACAATACTCA
97433166 AGAACATGTT
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
38 5 0.06
39 72 0.88
40 5 0.06
ACGTcount: A:0.43, C:0.22, G:0.04, T:0.30
Consensus pattern (39 bp):
AAGCAAATATCACAATACTCATATATTCACATAACATTT
Found at i:97435140 original size:12 final size:12
Alignment explanation
Indices: 97435103--97435141 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
97435093 AATATTTTTG
97435103 TTTTTTATTTAA
1 TTTTTTATTTAA
* *
97435115 GTTTTTCTTCTAA
1 TTTTTTATT-TAA
97435128 TTTTTTATTTAA
1 TTTTTTATTTAA
97435140 TT
1 TT
97435142 ACTTCTAGCA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.72
Consensus pattern (12 bp):
TTTTTTATTTAA
Found at i:97441547 original size:21 final size:22
Alignment explanation
Indices: 97441518--97441593 Score: 64
Period size: 24 Copynumber: 3.4 Consensus size: 22
97441508 CGTTTGGCCC
* *
97441518 ATTTCTTTT-TTTCTTTTTATG
1 ATTTATTTTATTTATTTTTATG
*
97441539 ATTTATTTTATTTATTTTTATT
1 ATTTATTTTATTTATTTTTATG
* * *
97441561 ATATTCATTATATTTAGTTTTATT
1 AT-TT-ATTTTATTTATTTTTATG
97441585 ATTTTATTT
1 A-TTTATTT
97441594 ATTATTATCC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
21 8 0.18
22 12 0.27
23 5 0.11
24 19 0.42
25 1 0.02
ACGTcount: A:0.21, C:0.04, G:0.03, T:0.72
Consensus pattern (22 bp):
ATTTATTTTATTTATTTTTATG
Found at i:97441551 original size:9 final size:9
Alignment explanation
Indices: 97441539--97441601 Score: 53
Period size: 9 Copynumber: 7.2 Consensus size: 9
97441529 TCTTTTTATG
97441539 ATTTATTTT
1 ATTTATTTT
97441548 ATTTA--TT
1 ATTTATTTT
*
97441555 -TTTATTAT
1 ATTTATTTT
* *
97441563 ATTCATTAT
1 ATTTATTTT
97441572 ATTTAGTTTT
1 ATTTA-TTTT
97441582 A-TTATTTT
1 ATTTATTTT
97441590 ATTTATTATT
1 ATTTATT-TT
97441600 AT
1 AT
97441602 CCTTACTGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
6 4 0.09
7 2 0.05
8 6 0.14
9 24 0.55
10 8 0.18
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (9 bp):
ATTTATTTT
Found at i:97441595 original size:24 final size:24
Alignment explanation
Indices: 97441532--97441595 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
97441522 CTTTTTTTCT
* *
97441532 TTTTATGA-TTTATTT-TATTTAT
1 TTTTATTATTTTATTTATATTTAG
*
97441554 TTTTATTATATTCA-TTATATTTAG
1 TTTTATTAT-TTTATTTATATTTAG
97441578 TTTTATTATTTTATTTAT
1 TTTTATTATTTTATTTAT
97441596 TATTATCCTT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 7 0.21
23 5 0.15
24 22 0.65
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (24 bp):
TTTTATTATTTTATTTATATTTAG
Found at i:97445867 original size:93 final size:93
Alignment explanation
Indices: 97445755--97445926 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97445745 CGCCCATAAG
* *
97445755 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97445820 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
97445848 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97445913 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97445927 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Done.