Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 33 of 325
Found at i:7816430 original size:22 final size:22
Alignment explanation
Indices: 7816400--7816460 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
7816390 TTATTATATC
*
7816400 TTTTACTATTATTATTGTTGTA
1 TTTTACTATTATTATTGTTATA
* * *
7816422 TTTTTCTATTATTGTTATTATA
1 TTTTACTATTATTATTGTTATA
* *
7816444 TTTTCCT-TTATTTTTGT
1 TTTTACTATTATTATTGT
7816461 ATTTACTTAT
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.18, C:0.07, G:0.07, T:0.69
Consensus pattern (22 bp):
TTTTACTATTATTATTGTTATA
Found at i:7816434 original size:3 final size:3
Alignment explanation
Indices: 7816180--7816415 Score: 78
Period size: 3 Copynumber: 79.3 Consensus size: 3
7816170 TTCTCATCAC
* * *
7816180 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
7816226 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* * * * *
7816271 CAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAG CAC TACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * ** *
7816317 T-T TAT TAC TAT TAT T-T AAT ATAT TAT TTT TAC TAT TAT CGT CA-
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
7816360 TAT TGT TAC TAT TAC TAT TA- TAT TAT TA- TGT TAT TA- TAT CTTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
*
7816403 TAC TAT TAT TAT T
1 TAT TAT TAT TAT T
7816416 GTTGTATTTT
Statistics
Matches: 169, Mismatches: 46, Indels: 36
0.67 0.18 0.14
Matches are distributed among these distances:
2 16 0.09
3 137 0.81
4 16 0.09
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:7828709 original size:22 final size:23
Alignment explanation
Indices: 7828668--7828710 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7828658 TGGGCCCAGA
* *
7828668 AATAAATCCAAAAACTAAAATAT
1 AATAAACCCAAAAACAAAAATAT
7828691 AATAAACCCAAAAA-AAAAAT
1 AATAAACCCAAAAACAAAAAT
7828711 GAAGTCCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.70, C:0.14, G:0.00, T:0.16
Consensus pattern (23 bp):
AATAAACCCAAAAACAAAAATAT
Found at i:7828853 original size:19 final size:19
Alignment explanation
Indices: 7828829--7828889 Score: 99
Period size: 19 Copynumber: 3.3 Consensus size: 19
7828819 AATCTTTAAG
7828829 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
7828848 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
7828867 GATAT--AGTCTTAGATAT
1 GATATGCAATCTTAGATAT
7828884 GATATG
1 GATATG
7828890 ATATGATATG
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
17 16 0.40
19 24 0.60
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:7832757 original size:80 final size:80
Alignment explanation
Indices: 7832673--7832821 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
7832663 TATGGTAACC
* * * *
7832673 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
7832737 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
7832753 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
7832818 CCGG
66 CCGG
7832822 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:7832763 original size:40 final size:38
Alignment explanation
Indices: 7832714--7832821 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
7832704 ATCACGATTT
*
7832714 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
7832754 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
7832794 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
7832822 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:7840836 original size:80 final size:80
Alignment explanation
Indices: 7840752--7840900 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
7840742 TATGGTAACC
* * * *
7840752 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
7840816 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
7840832 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
7840897 CCGG
66 CCGG
7840901 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:7840842 original size:40 final size:38
Alignment explanation
Indices: 7840793--7840900 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
7840783 ATCACGATTT
*
7840793 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
7840833 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
7840873 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
7840901 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:7846684 original size:2 final size:2
Alignment explanation
Indices: 7846677--7846703 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7846667 ATCTATTGAG
7846677 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7846704 GAATAAATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7849965 original size:26 final size:26
Alignment explanation
Indices: 7849934--7850040 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
7849924 TGAAATGCCC
*
7849934 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
7849960 ATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
7849985 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
7850011 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7850037 ATCA
1 ATCA
7850041 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
25 24 0.32
26 51 0.68
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7850004 original size:51 final size:52
Alignment explanation
Indices: 7849934--7850040 Score: 189
Period size: 51 Copynumber: 2.1 Consensus size: 52
7849924 TGAAATGCCC
7849934 ATCATGGAACATTTACCTAAACCATTATCAT-GAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
7849985 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
7850037 ATCA
1 ATCA
7850041 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
51 29 0.55
52 24 0.45
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:7856952 original size:26 final size:26
Alignment explanation
Indices: 7856921--7857028 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
7856911 TGAAATGCCC
*
7856921 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
7856947 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
7856973 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
7856999 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
7857025 ATCA
1 ATCA
7857029 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:7873275 original size:18 final size:18
Alignment explanation
Indices: 7873252--7873287 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7873242 GATAAACGCG
7873252 CACATAATACGGCTATGA
1 CACATAATACGGCTATGA
*
7873270 CACATAATACGGGTATGA
1 CACATAATACGGCTATGA
7873288 AACTAGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.22
Consensus pattern (18 bp):
CACATAATACGGCTATGA
Found at i:7876352 original size:16 final size:16
Alignment explanation
Indices: 7876316--7876345 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7876306 TGCTATATGT
7876316 TGATTAAATGTAATTA
1 TGATTAAATGTAATTA
7876332 TGATTAAA-GTAATT
1 TGATTAAATGTAATT
7876346 GTGGATTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (16 bp):
TGATTAAATGTAATTA
Found at i:7880839 original size:28 final size:28
Alignment explanation
Indices: 7880799--7880854 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
7880789 CCTCAAAAGT
*
7880799 ATGTCATGATAAGTAATAAGCTAGTGGA
1 ATGTCATGATAAGCAATAAGCTAGTGGA
7880827 ATGTCATGATAAGCAATAAGCTAGTGGA
1 ATGTCATGATAAGCAATAAGCTAGTGGA
7880855 CTTTCTTTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.39, C:0.09, G:0.25, T:0.27
Consensus pattern (28 bp):
ATGTCATGATAAGCAATAAGCTAGTGGA
Found at i:7885924 original size:95 final size:96
Alignment explanation
Indices: 7885760--7885963 Score: 313
Period size: 95 Copynumber: 2.1 Consensus size: 96
7885750 TGTGAGCCAG
* * *
7885760 TGTAAGACCATGTCTAGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACTATGTTTGG
1 TGTAAGACCATGTCTAGAACATCGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGG
7885825 AACATGACATCAGCATTGTTATGAGAGCTAA
66 AACATGACATCAGCATTGTTATGAGAGCTAA
*
7885856 TGTAAGACCATGTCTAGAACATCGCATC-G-CTGCAATATGTGAGCTAGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTAGAACATCGCATCGGCCT-CAATATGTGAGCCAGTGTAAGACCATGTTTG
* ** *
7885919 GAACATGGCATTGGCATTGTTATGAGAGCTAG
65 GAACATGACATCAGCATTGTTATGAGAGCTAA
7885951 TGTAAGACCATGT
1 TGTAAGACCATGT
7885964 GTAACACCCC
Statistics
Matches: 99, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
94 2 0.02
95 71 0.72
96 26 0.26
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (96 bp):
TGTAAGACCATGTCTAGAACATCGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGG
AACATGACATCAGCATTGTTATGAGAGCTAA
Found at i:7885962 original size:48 final size:48
Alignment explanation
Indices: 7885753--7885963 Score: 205
Period size: 48 Copynumber: 4.4 Consensus size: 48
7885743 GGGTACATGT
* * * ** *
7885753 GAGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCCTCAATATGT
1 GAGCTAGTGTAAGACCATGT-TTGGAACATGGCATCGGCATTGATATGA
* * * * *
7885801 GAGCCAGTGTAAGACTATGTTTGGAACATGACATCAGCATTGTTATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGA
* * * * *
7885849 GAGCTAATGTAAGACCATGTCTAGAACATCGCATC-GC--TGCAATATGT
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--ATATGA
* *
7885896 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTGTTATGA
1 GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGA
7885944 GAGCTAGTGTAAGACCATGT
1 GAGCTAGTGTAAGACCATGT
7885964 GTAACACCCC
Statistics
Matches: 132, Mismatches: 25, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
45 2 0.02
47 39 0.30
48 89 0.67
50 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGATATGA
Found at i:7888914 original size:48 final size:48
Alignment explanation
Indices: 7888836--7889176 Score: 390
Period size: 48 Copynumber: 7.2 Consensus size: 48
7888826 TGTCTAGGAT
* * *
7888836 ATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCACGTTTGGAAC
1 ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGAAC
* *** *
7888884 ATGGCATCGGGATTGTTATGAGAGCTAGTGTAAG---A---TT-GAGAC
1 ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGA-AC
* * *
7888926 ATGGCATCGGCCTCAATATGTGAGCTAGTGTAAGACCATGTCTGGGAC
1 ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGAAC
* *
7888974 ATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAAC
1 ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGAAC
*** * *
7889022 ATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGATTGGAAC
1 ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGAAC
* *
7889070 ATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAAC
1 ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGAAC
*** * * *
7889118 ATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGTTCGGGAC
1 ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGAAC
7889166 ATGGCATCGGC
1 ATGGCATCGGC
7889177 CTCTTACCCT
Statistics
Matches: 245, Mismatches: 40, Indels: 16
0.81 0.13 0.05
Matches are distributed among these distances:
41 2 0.01
42 32 0.13
45 2 0.01
48 208 0.85
49 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (48 bp):
ATGGCATCGGCATCAATATGTGAGCTAGTGTAAGACCATGTTTGGAAC
Found at i:7889053 original size:96 final size:95
Alignment explanation
Indices: 7888924--7889179 Score: 431
Period size: 96 Copynumber: 2.7 Consensus size: 95
7888914 TAAGATTGAG
* *** *
7888924 ACATGGCATCGGCCTCAATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCA
1 ACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGT-TGGGACATGGCATCGGCCTCA
7888989 ATATGTGAGCCAGTGTAAGACCATGTTTGGA
65 ATATGTGAGCCAGTGTAAGACCATGTTTGGA
*
7889020 ACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGATTGGAACATGGCATCGGCCTCA
1 ACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATG-TTGGGACATGGCATCGGCCTCA
7889085 ATATGTGAGCCAGTGTAAGACCATGTTTGGA
65 ATATGTGAGCCAGTGTAAGACCATGTTTGGA
7889116 ACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGTTCGGGACATGGCATCGGCCTC
1 ACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGTT-GGGACATGGCATCGGCCTC
7889180 TTACCCTTTT
Statistics
Matches: 151, Mismatches: 7, Indels: 4
0.93 0.04 0.02
Matches are distributed among these distances:
95 2 0.01
96 148 0.98
97 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (95 bp):
ACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGTTGGGACATGGCATCGGCCTCAA
TATGTGAGCCAGTGTAAGACCATGTTTGGA
Found at i:7889148 original size:144 final size:138
Alignment explanation
Indices: 7888822--7889176 Score: 496
Period size: 144 Copynumber: 2.5 Consensus size: 138
7888812 AGGATGTTAC
* * *
7888822 ACCATGTCTAGG-ATATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCACGTTTGGAACAT
1 ACCATGTCT-GGAACATGGCATCGGCATCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACAT
* *
7888886 GGCATCGGGATTGTTATGAGAGCTAGTGTAAGATTGAGACATGGCATCGGCCTCAATATGTGAGC
65 GGCATCGGCATTGTTATGAGAGCTAGTGTAAGAATGAGACATGGCATCGGCCTCAATATGTGAGC
*
7888951 TAGTGTAAG
130 CAGTGTAAG
* *
7888960 ACCATGTCTGGGACATGGCATCGGCCTCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATG
1 ACCATGTCTGGAACATGGCATCGGCATCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATG
7889025 GCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGATTGGAACATGGCATCGGCCTCAATATG
66 GCATCGGCATTGTTATGAGAGCTAGTGTAAGA--ATGA---G-ACATGGCATCGGCCTCAATATG
7889090 TGAGCCAGTGTAAG
125 TGAGCCAGTGTAAG
* *** * * * *
7889104 ACCATGTTTGGAACATGGCATCGGCATTGTTATGAGAGCTAGTGTAAGACCATGTTCGGGACATG
1 ACCATGTCTGGAACATGGCATCGGCATCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATG
7889169 GCATCGGC
66 GCATCGGC
7889177 CTCTTACCCT
Statistics
Matches: 195, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
137 2 0.01
138 91 0.47
140 3 0.02
143 1 0.01
144 98 0.50
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (138 bp):
ACCATGTCTGGAACATGGCATCGGCATCAATATGTGAGCCAGTGTAAGACCATGTTTGGAACATG
GCATCGGCATTGTTATGAGAGCTAGTGTAAGAATGAGACATGGCATCGGCCTCAATATGTGAGCC
AGTGTAAG
Found at i:7899301 original size:84 final size:85
Alignment explanation
Indices: 7899109--7899411 Score: 346
Period size: 85 Copynumber: 3.6 Consensus size: 85
7899099 GTTTGATCAC
* * * * *
7899109 GAACCAAGTGGCAGTTTATTTAAT-TAGCAAATTTGTTGTGCACCTACAACAAGTGGA-AGTAAG
1 GAACCAAGTGGCAATTTGTTTAATCT-GCAAATATGTTGTGCACCCACAACAAGT-GACAGTAAC
* *
7899172 TGCAAATATGTGGTTC-GATCAC
64 TGAAAATATGTGGTTCAG-TCAT
* *
7899194 GAACCAAGTGGAAATTTGCTTAATCTGCAAATATGTTGTGCACCCA-AACAAGTGACAGTAACTG
1 GAACCAAGTGGCAATTTGTTTAATCTGCAAATATGTTGTGCACCCACAACAAGTGACAGTAACTG
7899258 AAAATATGTGGTTCAGTCAT
66 AAAATATGTGGTTCAGTCAT
* * * * * * * * *
7899278 GAACCAAATGGCAGTATGTTTAATCTACAAATATGTTTTGCAACCATAACAAATGGCAGTAACT-
1 GAACCAAGTGGCAATTTGTTTAATCTGCAAATATGTTGTGCACCCACAACAAGTGACAGTAACTG
*
7899342 ACAAATATGTGGTTCAATCAT
66 A-AAATATGTGGTTCAGTCAT
* *
7899363 GAACCAAGTGGCAATTTGTTTAATTTGCAAACATGTTGTGCACCCACAA
1 GAACCAAGTGGCAATTTGTTTAATCTGCAAATATGTTGTGCACCCACAA
7899412 GTGGCAGTAA
Statistics
Matches: 184, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
83 2 0.01
84 69 0.38
85 112 0.61
86 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (85 bp):
GAACCAAGTGGCAATTTGTTTAATCTGCAAATATGTTGTGCACCCACAACAAGTGACAGTAACTG
AAAATATGTGGTTCAGTCAT
Found at i:7899401 original size:169 final size:167
Alignment explanation
Indices: 7899109--7899429 Score: 430
Period size: 169 Copynumber: 1.9 Consensus size: 167
7899099 GTTTGATCAC
* * * * * *
7899109 GAACCAAGTGGCAGTTTATTTAATTAGCAAATTTGTTGTGCACCTACAACAAGTGGAAGTAAGTG
1 GAACCAAATGGCAGTATATTTAATTAGCAAATATGTTGTGCACCTACAACAAATGGAAGTAACTA
* *
7899174 CAAATATGTGGTTCGATCACGAACCAAGTGGAAATTTGCTTAATCTGCAAATATGTTGTGCACCC
66 CAAATATGTGGTTCAATCACGAACCAAGTGGAAATTTGCTTAATCTGCAAACATGTTGTGCACCC
7899239 AAACAAGTGACAGTAACTGAAAATATGTGGTTCAGTCAT
131 --ACAAGTGACAGTAACTGAAAATATGTGGTTCAGTCAT
* * * *
7899278 GAACCAAATGGCAGTATGTTTAATCTA-CAAATATGTTTTGCAACC-ATAACAAATGGCAGTAAC
1 GAACCAAATGGCAGTATATTTAAT-TAGCAAATATGTTGTGC-ACCTACAACAAATGGAAGTAAC
* * * *
7899341 TACAAATATGTGGTTCAATCATGAACCAAGTGGCAATTTGTTTAATTTGCAAACATGTTGTGCAC
64 TACAAATATGTGGTTCAATCACGAACCAAGTGGAAATTTGCTTAATCTGCAAACATGTTGTGCAC
* *
7899406 CCACAAGTGGCAGTAACTGCAAAT
129 CCACAAGTGACAGTAACTGAAAAT
7899430 TAGCAGTAGT
Statistics
Matches: 132, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
167 20 0.15
169 107 0.81
170 5 0.04
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (167 bp):
GAACCAAATGGCAGTATATTTAATTAGCAAATATGTTGTGCACCTACAACAAATGGAAGTAACTA
CAAATATGTGGTTCAATCACGAACCAAGTGGAAATTTGCTTAATCTGCAAACATGTTGTGCACCC
ACAAGTGACAGTAACTGAAAATATGTGGTTCAGTCAT
Found at i:7906111 original size:31 final size:31
Alignment explanation
Indices: 7906073--7906135 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
7906063 CTTTTCACAC
7906073 TTCATATTTCATAACACTGGGCCAAAGCCTT
1 TTCATATTTCATAACACTGGGCCAAAGCCTT
** *
7906104 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCAAAGCCTT
7906135 T
1 T
7906136 ACTGTAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCAAAGCCTT
Found at i:7906380 original size:24 final size:24
Alignment explanation
Indices: 7906343--7906426 Score: 114
Period size: 24 Copynumber: 3.4 Consensus size: 24
7906333 CTGGATGCCT
*
7906343 AGCCTCTTTTAATAACTGGGGAATA
1 AGCC-CTTTTAATAACTGGGGCATA
7906368 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
7906392 ACCCCTTTATCATAATTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
7906417 AGCCCTTTTA
1 AGCCCTTTTA
7906427 CACATCCTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
24 27 0.52
25 25 0.48
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:7906500 original size:20 final size:20
Alignment explanation
Indices: 7906475--7906541 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
7906465 TTATGAATAC
7906475 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
7906495 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
* *
7906515 GTCATGTGCATGTCATACAT
1 ATCATGTGCATATCATACAT
*
7906535 ACCATGT
1 ATCATGT
7906542 TTACTAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:7909523 original size:41 final size:41
Alignment explanation
Indices: 7909478--7909617 Score: 169
Period size: 41 Copynumber: 3.4 Consensus size: 41
7909468 GTGTAATTAG
*
7909478 GGGCATGTATGTGCT-ATTCAGGGGTACCAGAGTACAAACAA
1 GGGCACGTATGTG-TAATTCAGGGGTACCAGAGTACAAACAA
* * *
7909519 GGGCACGTATGTGTAATTTAGGGGAACCAAAGTACAAACAA
1 GGGCACGTATGTGTAATTCAGGGGTACCAGAGTACAAACAA
* *
7909560 GGGCACGTATGTGTAATTCAAGGGTACC-GAAGTACAAACAG
1 GGGCACGTATGTGTAATTCAGGGGTACCAG-AGTACAAACAA
* *
7909601 GGGCTCG-ATGTGAAATT
1 GGGCACGTATGTGTAATT
7909618 AAAAGTATAA
Statistics
Matches: 86, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 10 0.12
41 76 0.88
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (41 bp):
GGGCACGTATGTGTAATTCAGGGGTACCAGAGTACAAACAA
Found at i:7913293 original size:27 final size:28
Alignment explanation
Indices: 7913236--7913305 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
7913226 AAATTTGTAC
**
7913236 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
*
7913264 AGCACTATGTGTGCG-AGCTGATTATAT
1 AGCACTAAGTGTGCGAAGCTGATTATAT
7913291 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
7913306 GACTTATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
27 24 0.63
28 14 0.37
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAAGCTGATTATAT
Found at i:7913314 original size:27 final size:27
Alignment explanation
Indices: 7913236--7913317 Score: 103
Period size: 27 Copynumber: 3.0 Consensus size: 27
7913226 AAATTTGTAC
* *
7913236 AGCACTAAGTGTGCGAATTTGATTATAT
1 AGCACTAAGTGTGCGGACTT-ATTATAT
* *
7913264 AGCACTATGTGTGC-GAGCTGATTATAT
1 AGCACTAAGTGTGCGGA-CTTATTATAT
7913291 AGCACTAAGTGTGCGGACTTATTATAT
1 AGCACTAAGTGTGCGGACTTATTATAT
7913318 GCTTTTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
27 30 0.65
28 16 0.35
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGACTTATTATAT
Found at i:7920519 original size:38 final size:39
Alignment explanation
Indices: 7920428--7920536 Score: 152
Period size: 38 Copynumber: 2.8 Consensus size: 39
7920418 CTGGAAATTA
*
7920428 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGGGCTAC
* *
7920468 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCA-GTCTTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAGGGCTAC
7920505 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCA
7920537 CGTGGTTATA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
37 4 0.06
38 35 0.55
39 25 0.39
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAGGGCTAC
Found at i:7928554 original size:40 final size:39
Alignment explanation
Indices: 7928461--7928569 Score: 150
Period size: 40 Copynumber: 2.8 Consensus size: 39
7928451 CTGGAAATTA
* *
7928461 TATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGGCTAC
1 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGGCTAC
* *
7928500 -ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCGTTC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGGC-TAC
7928539 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGC
7928570 ACGTGGTTAT
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
37 3 0.05
38 28 0.44
39 2 0.03
40 30 0.48
ACGTcount: A:0.23, C:0.27, G:0.29, T:0.21
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGGCTAC
Found at i:7928583 original size:40 final size:40
Alignment explanation
Indices: 7928458--7928585 Score: 149
Period size: 40 Copynumber: 3.2 Consensus size: 40
7928448 ATGCTGGAAA
*
7928458 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTG--C-TAGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCACGT-GG
* * *
7928496 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
*
7928536 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
7928576 TTATATCCGG
1 TTATATCCGG
7928586 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 10
0.80 0.10 0.11
Matches are distributed among these distances:
37 3 0.04
38 26 0.35
39 1 0.01
40 44 0.59
41 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
Found at i:7936532 original size:124 final size:124
Alignment explanation
Indices: 7936310--7936534 Score: 326
Period size: 124 Copynumber: 1.8 Consensus size: 124
7936300 GAATTATGTG
* * * * * * *
7936310 AAATGAAATATGGATGTGTATTGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
* **
7936375 GCTAAGTCCCGAAGGCGATTATGCTAGTGATTATATTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
*
7936434 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATATCCGG
1 AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
*
7936499 GCTAAGTCCCGAAGACG-TTATTGCTGGAAATTATAT
66 GCTAAGTCCCGAAGACGATTA-TGCTAGAAATTATAT
7936535 CCGGGTTAAG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 3 0.03
124 85 0.97
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (124 bp):
AAATGAAATATGAATGTCTAATGATTATTGATGTATGTGTGCATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGAAATTATATTTGTGTTTGAGCCTTAGTAACGA
Found at i:7936656 original size:40 final size:40
Alignment explanation
Indices: 7936529--7936658 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
7936519 TTGCTGGAAA
* * *
7936529 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGCGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
7936569 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
7936609 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
7936649 TTATATCCGG
1 TTATATCCGG
7936659 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:7940000 original size:20 final size:21
Alignment explanation
Indices: 7939975--7940016 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7939965 CCGAATATGA
*
7939975 CCTTC-TTGGGGGTTGGTAAG
1 CCTTCTTTAGGGGTTGGTAAG
7939995 CCTTCTTTAGGGGTTGGTAAG
1 CCTTCTTTAGGGGTTGGTAAG
7940016 C
1 C
7940017 TTAAGGAGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.12, C:0.17, G:0.36, T:0.36
Consensus pattern (21 bp):
CCTTCTTTAGGGGTTGGTAAG
Found at i:7940722 original size:25 final size:26
Alignment explanation
Indices: 7940675--7940723 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
7940665 TTAATCTCTA
* *
7940675 TTTTTAAATTTTATAATATATATTTG
1 TTTTAAAATTTTATAATAAATATTTG
7940701 TTTTAAAATTTTATAA-AAATATT
1 TTTTAAAATTTTATAATAAATATT
7940724 AAATACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.29
26 15 0.71
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (26 bp):
TTTTAAAATTTTATAATAAATATTTG
Found at i:7942578 original size:2 final size:2
Alignment explanation
Indices: 7942571--7942604 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7942561 CTTTGTTTCA
7942571 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7942605 CGCACATAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7942713 original size:19 final size:19
Alignment explanation
Indices: 7942691--7942746 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 19
7942681 ATTAAGGTTA
7942691 ATAAATATTTTATAAAAAT
1 ATAAATATTTTATAAAAAT
*** *
7942710 AT-AATAAAATATTAAAAAG
1 ATAAATATTTTA-TAAAAAT
7942729 ATAAATATTTTA-AAAAAT
1 ATAAATATTTTATAAAAAT
7942747 TACATATTAA
Statistics
Matches: 27, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
18 11 0.41
19 10 0.37
20 6 0.22
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAATATTTTATAAAAAT
Found at i:7943466 original size:37 final size:37
Alignment explanation
Indices: 7943425--7943508 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 37
7943415 CCCCCCCAAA
7943425 AAAAACCTAACCCCCCAAAAAAAAGAAA-AAG-AAAAAG
1 AAAAACCTAA-CCCCCAAAAAAAA-AAAGAAGAAAAAAG
7943462 AAAAACCTAA--CCCAAAAAAAAAAAGAAGAAAAAAG
1 AAAAACCTAACCCCCAAAAAAAAAAAGAAGAAAAAAG
7943497 AAAAACCTAACC
1 AAAAACCTAACC
7943509 AAAAATAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
33 3 0.07
34 14 0.33
35 16 0.37
37 10 0.23
ACGTcount: A:0.69, C:0.20, G:0.07, T:0.04
Consensus pattern (37 bp):
AAAAACCTAACCCCCAAAAAAAAAAAGAAGAAAAAAG
Found at i:7943511 original size:34 final size:34
Alignment explanation
Indices: 7943438--7943530 Score: 134
Period size: 35 Copynumber: 2.7 Consensus size: 34
7943428 AACCTAACCC
7943438 CCCAAAAAAAAGAAAAAG-AAAAAGAAAAACCTAA
1 CCCAAAAAAAA-AAAAAGAAAAAAGAAAAACCTAA
7943472 CCCAAAAAAAAAAAGAAGAAAAAAGAAAAACCTAA
1 CCCAAAAAAAAAAA-AAGAAAAAAGAAAAACCTAA
* *
7943507 CCAAAAATAAAAAAAAATAAAAAA
1 CCCAAAA-AAAAAAAAAGAAAAAA
7943531 ACCTAGCCAC
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
33 3 0.06
34 14 0.26
35 30 0.56
36 7 0.13
ACGTcount: A:0.76, C:0.13, G:0.06, T:0.04
Consensus pattern (34 bp):
CCCAAAAAAAAAAAAAGAAAAAAGAAAAACCTAA
Found at i:7944078 original size:2 final size:2
Alignment explanation
Indices: 7944073--7944103 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7944063 TAAATACTAT
*
7944073 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7944104 TTTAAATACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:7944377 original size:19 final size:19
Alignment explanation
Indices: 7944309--7944381 Score: 69
Period size: 19 Copynumber: 3.7 Consensus size: 19
7944299 TCGTAGATAT
7944309 TATTATTATTATTAT-TACA
1 TATTATTATT-TTATGTACA
* * *
7944328 TACTT-TTATTATATGCATA
1 TA-TTATTATTTTATGTACA
7944347 TATATATGTATTTTATGTACA
1 TAT-TAT-TATTTTATGTACA
7944368 TATTATTATTTTAT
1 TATTATTATTTTAT
7944382 ATTATTATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
18 4 0.09
19 20 0.47
20 6 0.14
21 13 0.30
ACGTcount: A:0.33, C:0.05, G:0.04, T:0.58
Consensus pattern (19 bp):
TATTATTATTTTATGTACA
Found at i:7947053 original size:14 final size:15
Alignment explanation
Indices: 7947025--7947056 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
7947015 ATTCATTTCA
7947025 CAAATATCAAAACAT
1 CAAATATCAAAACAT
7947040 CAAATATC-AAACAT
1 CAAATATCAAAACAT
7947054 CAA
1 CAA
7947057 TACAGTGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.59, C:0.22, G:0.00, T:0.19
Consensus pattern (15 bp):
CAAATATCAAAACAT
Found at i:7963169 original size:23 final size:23
Alignment explanation
Indices: 7963099--7963170 Score: 85
Period size: 23 Copynumber: 3.2 Consensus size: 23
7963089 GATAAGCTAT
7963099 TGAGCTG-AACAGTAAGCTCTT-
1 TGAGCTGAAACAGTAAGCTCTTA
* * **
7963120 TCGAGCTGAATCTGTAAGCTCCAA
1 T-GAGCTGAAACAGTAAGCTCTTA
7963144 TGAGCTGAAACAGTAAGCTCTTA
1 TGAGCTGAAACAGTAAGCTCTTA
7963167 TGAG
1 TGAG
7963171 TGTGGTGAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
21 1 0.03
22 6 0.15
23 32 0.80
24 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTTA
Found at i:7968320 original size:29 final size:29
Alignment explanation
Indices: 7968239--7968345 Score: 119
Period size: 29 Copynumber: 3.7 Consensus size: 29
7968229 TACATACATG
*
7968239 CATATGGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
7968267 CAAATGGCCCATCT-GGCCCAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* * *
7968296 CTTATGGCCCACTAGGACCAATTCACATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
7968325 CATATAGCCCATTAGGCCCAA
1 CATATGGCCCACTAGGCCCAA
7968346 ATCGTATTAT
Statistics
Matches: 64, Mismatches: 12, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:7968572 original size:24 final size:24
Alignment explanation
Indices: 7968542--7968592 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
7968532 GTAGCCCAAC
*
7968542 TTTCGGCTTTTTGGCATTTCAGCT
1 TTTCGGCTTTTCGGCATTTCAGCT
*
7968566 TTTCGGCTTTTCGGCATTTCGGCT
1 TTTCGGCTTTTCGGCATTTCAGCT
7968590 TTT
1 TTT
7968593 GCCGATTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.06, C:0.22, G:0.22, T:0.51
Consensus pattern (24 bp):
TTTCGGCTTTTCGGCATTTCAGCT
Found at i:7968574 original size:8 final size:8
Alignment explanation
Indices: 7968542--7968592 Score: 66
Period size: 8 Copynumber: 6.4 Consensus size: 8
7968532 GTAGCCCAAC
7968542 TTTCGGCT
1 TTTCGGCT
* *
7968550 TTTTGGCA
1 TTTCGGCT
*
7968558 TTTCAGCT
1 TTTCGGCT
7968566 TTTCGGCT
1 TTTCGGCT
*
7968574 TTTCGGCA
1 TTTCGGCT
7968582 TTTCGGCT
1 TTTCGGCT
7968590 TTT
1 TTT
7968593 GCCGATTCAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.06, C:0.22, G:0.22, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:7971746 original size:18 final size:18
Alignment explanation
Indices: 7971720--7971754 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7971710 AGATAAGTGA
*
7971720 AGAAGATGAAAAAATAAT
1 AGAAAATGAAAAAATAAT
*
7971738 AGAAAATGAAAGAATAA
1 AGAAAATGAAAAAATAA
7971755 CACTAGAGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.14
Consensus pattern (18 bp):
AGAAAATGAAAAAATAAT
Found at i:7974285 original size:14 final size:14
Alignment explanation
Indices: 7974245--7974286 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
7974235 TGATTAGAGG
* *
7974245 TTAATTAATTTAAT
1 TTAATTAACTTAAC
7974259 TTAATTAACTTAAGC
1 TTAATTAACTTAA-C
7974274 TTAATTAA-TTAAC
1 TTAATTAACTTAAC
7974287 CATTAAGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 1 0.04
14 16 0.64
15 8 0.32
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (14 bp):
TTAATTAACTTAAC
Found at i:7976601 original size:16 final size:16
Alignment explanation
Indices: 7976580--7976617 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7976570 CCGGCAAATC
7976580 CTGAAATGC-GAACAAG
1 CTGAAATGCTGAA-AAG
7976596 CTGAAATGCTGAAAAG
1 CTGAAATGCTGAAAAG
7976612 CTGAAA
1 CTGAAA
7976618 GTTTGGCTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.45, C:0.16, G:0.24, T:0.16
Consensus pattern (16 bp):
CTGAAATGCTGAAAAG
Found at i:7976869 original size:28 final size:27
Alignment explanation
Indices: 7976829--7976930 Score: 132
Period size: 28 Copynumber: 3.7 Consensus size: 27
7976819 ATTGCATGAC
* *
7976829 TATGAATGTGATTAGGCCTGACGGGCCA
1 TATGAAAGTGATT-GGCCTGATGGGCCA
7976857 TATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAAAGTGATT-GGCCTGATGGGCCA
*
7976885 TATGAAAGTGATTGGTCCCGATGGGCCA
1 TATGAAAGTGATTGG-CCTGATGGGCCA
* *
7976913 TATGAATGAGATTGGCCT
1 TATGAAAGTGATTGGCCT
7976931 AAAGGGGCCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
27 4 0.06
28 62 0.94
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.26
Consensus pattern (27 bp):
TATGAAAGTGATTGGCCTGATGGGCCA
Found at i:7976939 original size:56 final size:56
Alignment explanation
Indices: 7976829--7976946 Score: 132
Period size: 56 Copynumber: 2.1 Consensus size: 56
7976819 ATTGCATGAC
* * * * *
7976829 TATGAATGTGATTAGGCCTGACGGGCCATATGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAAAGTGATTAGGCCCGACGGGCCATATGAAAGAGATTGGGCCTAAGGGGCCA
* *
7976885 TATGAAAGTGATT-GGTCCCGATGGGCCATATGAATGAGATT-GGCCTAAAGGGGCCA
1 TATGAAAGTGATTAGG-CCCGACGGGCCATATGAAAGAGATTGGGCCT-AAGGGGCCA
*
7976941 AATGAA
1 TATGAA
7976947 TAAGTATGGA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
55 7 0.13
56 45 0.87
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (56 bp):
TATGAAAGTGATTAGGCCCGACGGGCCATATGAAAGAGATTGGGCCTAAGGGGCCA
Found at i:7980630 original size:24 final size:25
Alignment explanation
Indices: 7980576--7980643 Score: 72
Period size: 24 Copynumber: 2.8 Consensus size: 25
7980566 GAGCTTACTG
7980576 TTCAGCTCAATAGAGCTTATCGTTT
1 TTCAGCTCAATAGAGCTTATCGTTT
7980601 TT-AGCTCAAT-GAGCTTA-C-TATT
1 TTCAGCTCAATAGAGCTTATCGT-TT
*
7980623 TATCAGCTCATAAAGAGCTTA
1 T-TCAGCTCA-ATAGAGCTTA
7980644 CCGACCATGT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 8 0.22
24 14 0.38
25 3 0.08
26 7 0.19
ACGTcount: A:0.29, C:0.19, G:0.15, T:0.37
Consensus pattern (25 bp):
TTCAGCTCAATAGAGCTTATCGTTT
Found at i:7984843 original size:52 final size:54
Alignment explanation
Indices: 7984764--7984870 Score: 182
Period size: 52 Copynumber: 2.0 Consensus size: 54
7984754 TTTTACTGAT
7984764 AGGTCCCTTTTAGGTGTTTTCATGAAAAATCACC-TAAAATATGTTTATCTAAA
1 AGGTCCCTTTTAGGTGTTTTCATGAAAAATCACCATAAAATATGTTTATCTAAA
7984817 AGGT-CCTTTTAGGTGTTTTCATGAAAAATCACCTAATAAAATATGTTTATCTAA
1 AGGTCCCTTTTAGGTGTTTTCATGAAAAATCACC--ATAAAATATGTTTATCTAA
7984871 CATCTAATTT
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
52 29 0.57
53 4 0.08
55 18 0.35
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (54 bp):
AGGTCCCTTTTAGGTGTTTTCATGAAAAATCACCATAAAATATGTTTATCTAAA
Found at i:7990676 original size:17 final size:17
Alignment explanation
Indices: 7990654--7990708 Score: 69
Period size: 16 Copynumber: 3.4 Consensus size: 17
7990644 TAAACAAGTT
7990654 AGTTATACACATCATGA
1 AGTTATACACATCATGA
* *
7990671 AGTTAT-CAAATCAT-T
1 AGTTATACACATCATGA
7990686 AGTTATACACATCATGA
1 AGTTATACACATCATGA
*
7990703 AATTAT
1 AGTTAT
7990709 CAAATCAACA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 6 0.19
16 14 0.45
17 11 0.35
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.35
Consensus pattern (17 bp):
AGTTATACACATCATGA
Found at i:7990688 original size:32 final size:32
Alignment explanation
Indices: 7990652--7990715 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
7990642 ATTAAACAAG
*
7990652 TTAGTTATACACATCATGAAGTTATCAAATCA
1 TTAGTTATACACATCATGAAATTATCAAATCA
7990684 TTAGTTATACACATCATGAAATTATCAAATCA
1 TTAGTTATACACATCATGAAATTATCAAATCA
7990716 ACATAGATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (32 bp):
TTAGTTATACACATCATGAAATTATCAAATCA
Found at i:7990715 original size:16 final size:16
Alignment explanation
Indices: 7990654--7990715 Score: 63
Period size: 16 Copynumber: 3.8 Consensus size: 16
7990644 TAAACAAGTT
*
7990654 AGTTATACACATCATGA
1 AGTTAT-CAAATCATGA
*
7990671 AGTTATCAAATCAT-T
1 AGTTATCAAATCATGA
*
7990686 AGTTATACACATCATGA
1 AGTTAT-CAAATCATGA
*
7990703 AATTATCAAATCA
1 AGTTATCAAATCA
7990716 ACATAGATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
15 6 0.16
16 20 0.54
17 11 0.30
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (16 bp):
AGTTATCAAATCATGA
Found at i:8000275 original size:17 final size:19
Alignment explanation
Indices: 8000249--8000285 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
8000239 TGTAAAACCC
8000249 ATGAGTATGAACT-TTGGT
1 ATGAGTATGAACTCTTGGT
8000267 ATGAG-ATGAACTCTTGGT
1 ATGAGTATGAACTCTTGGT
8000285 A
1 A
8000286 AGAATGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.30, C:0.08, G:0.27, T:0.35
Consensus pattern (19 bp):
ATGAGTATGAACTCTTGGT
Found at i:8003272 original size:43 final size:42
Alignment explanation
Indices: 8003211--8003403 Score: 180
Period size: 41 Copynumber: 4.6 Consensus size: 42
8003201 CGGGCCTTCG
8003211 AGCCTAGCAGGCTATAATGCCGGTGAGTTAACATCAGGCTTTA
1 AGCCTAGCAGGCTATAATGCCGGTGAGTTAA-ATCAGGCTTTA
* **
8003254 AGCCTAGCAGGCTATAATGCCGGTGAGTTAATATCGGGCTTCG
1 AGCCTAGCAGGCTATAATGCCGGTGAGTTAA-ATCAGGCTTTA
* * * * * *
8003297 AGCCTAGCAGGC-GTAATGCCGGTGAATGAATTCAGACTTAA
1 AGCCTAGCAGGCTATAATGCCGGTGAGTTAAATCAGGCTTTA
* ** *
8003338 AGTCTAGCAGGCT-TCGTGCCGGTGA-TAAAATTCAGG-TTTCA
1 AGCCTAGCAGGCTATAATGCCGGTGAGTTAAA-TCAGGCTTT-A
* *
8003379 AACCTAGCAGGCTA-ATTGCCGGTGA
1 AGCCTAGCAGGCTATAATGCCGGTGA
8003404 TTTGATATAA
Statistics
Matches: 123, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
40 5 0.04
41 52 0.42
42 15 0.12
43 51 0.41
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (42 bp):
AGCCTAGCAGGCTATAATGCCGGTGAGTTAAATCAGGCTTTA
Found at i:8004956 original size:40 final size:40
Alignment explanation
Indices: 8004919--8005105 Score: 236
Period size: 40 Copynumber: 4.7 Consensus size: 40
8004909 GCTACTCGTT
*
8004919 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
8004959 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
8004999 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
8005038 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
8005079 CAAAAGCCTTCGGGACTTAGCCCGGAT
1 CAAATGCCTTCGGGACTTAGCCCGGAT
8005106 ATCATTCGAA
Statistics
Matches: 127, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 2 0.02
39 32 0.25
40 61 0.48
41 29 0.23
42 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:8005030 original size:79 final size:82
Alignment explanation
Indices: 8004919--8005104 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
8004909 GCTACTCGTT
* *
8004919 CAAATGCCTTCGGGACATAGCCC-GATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* * *
8004982 GGATTTAGTAAC-TCGGA
65 GGATATAGTAACTTAGCA
* **
8004999 CCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
*
8005062 GATATAGTCACTTAGCA
66 GATATAGTAACTTAGCA
*
8005079 CAAAAGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
8005105 TATCATTCGA
Statistics
Matches: 91, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 46 0.51
80 31 0.34
81 11 0.12
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:8009186 original size:18 final size:18
Alignment explanation
Indices: 8009163--8009199 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
8009153 ATATGGGTAA
8009163 ACTACACCCAAGATCACT
1 ACTACACCCAAGATCACT
8009181 ACTACACCCAAGATCACT
1 ACTACACCCAAGATCACT
8009199 A
1 A
8009200 AACTATTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.38, G:0.05, T:0.16
Consensus pattern (18 bp):
ACTACACCCAAGATCACT
Found at i:8010388 original size:2 final size:2
Alignment explanation
Indices: 8010381--8010419 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8010371 CTTAAAATTT
8010381 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8010420 TAATTTTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8011876 original size:13 final size:13
Alignment explanation
Indices: 8011855--8011895 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
8011845 GAAAGTTCAC
*
8011855 AAATGTTTTATAA
1 AAATATTTTATAA
8011868 AAATATTTTAT-A
1 AAATATTTTATAA
*
8011880 AAATATTTTTTAA
1 AAATATTTTATAA
8011893 AAA
1 AAA
8011896 AATTAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (13 bp):
AAATATTTTATAA
Found at i:8011884 original size:12 final size:12
Alignment explanation
Indices: 8011855--8011894 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
8011845 GAAAGTTCAC
*
8011855 AAATGTTTTATAA
1 AAATATTTTAT-A
8011868 AAATATTTTATA
1 AAATATTTTATA
*
8011880 AAATATTTTTTA
1 AAATATTTTATA
8011892 AAA
1 AAA
8011895 AAATTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (12 bp):
AAATATTTTATA
Found at i:8024384 original size:2 final size:2
Alignment explanation
Indices: 8024377--8024404 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8024367 TTCGCATGGC
8024377 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8024405 CAAATATCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8025558 original size:43 final size:43
Alignment explanation
Indices: 8025279--8025576 Score: 320
Period size: 43 Copynumber: 7.0 Consensus size: 43
8025269 CGTACAATGT
* ** *
8025279 CAACGTCCCAGACATGGTCTTACAT-GCT-ATCTTATATTGATGC
1 CAACGTCCCAGACGTGGTCTTAC-TCG-TAATCACATATCGATGC
** *
8025322 CATTGTCCCAGACAG-GGTCTTACAT-G-AATCAAATA-CGATGC
1 CAACGTCCCAGAC-GTGGTCTTAC-TCGTAATCACATATCGATGC
* * * * * *
8025363 CGATGTCCCAGACATGGTCTTACACGTAACCACATATCAATGC
1 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATGC
* * * * *
8025406 CAACATCCCAAACGTGGACTTACACGTAATCACATATTGATGC
1 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATGC
* *
8025449 CAACGTCCCAGACTTGGTCTTACACGTAATCACATATCGATGC
1 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATGC
* *
8025492 CAGCATCCCAGACGTGGTCTTACTCGTAATCACATATCGATGC
1 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATGC
8025535 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATG
1 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATG
8025577 TCACATATAT
Statistics
Matches: 216, Mismatches: 33, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
41 25 0.12
42 13 0.06
43 178 0.82
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATGC
Found at i:8025573 original size:86 final size:86
Alignment explanation
Indices: 8025279--8025576 Score: 354
Period size: 86 Copynumber: 3.5 Consensus size: 86
8025269 CGTACAATGT
* ** * ***
8025279 CAACGTCCCAGACATGGTCTTACATGCT-ATCTTATATTGATGCCATTGTCCCAGACAG-GGTCT
1 CAACGTCCCAGACATGGTCTTACACG-TAATCACATATCGATGCCAACATCCCAGAC-GTGGTCT
*
8025342 TACAT-G-AATCAAATA-CGATGC
64 TAC-TCGTAATCACATATCGATGC
* * * * * *
8025363 CGATGTCCCAGACATGGTCTTACACGTAACCACATATCAATGCCAACATCCCAAACGTGGACTTA
1 CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCTTA
* *
8025428 CACGTAATCACATATTGATGC
66 CTCGTAATCACATATCGATGC
* *
8025449 CAACGTCCCAGACTTGGTCTTACACGTAATCACATATCGATGCCAGCATCCCAGACGTGGTCTTA
1 CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCTTA
8025514 CTCGTAATCACATATCGATGC
66 CTCGTAATCACATATCGATGC
* *
8025535 CAACGTCCCAGACGTGGTCTTACTCGTAATCACATATCGATG
1 CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATG
8025577 TCACATATAT
Statistics
Matches: 181, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
83 2 0.01
84 50 0.28
85 8 0.04
86 121 0.67
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (86 bp):
CAACGTCCCAGACATGGTCTTACACGTAATCACATATCGATGCCAACATCCCAGACGTGGTCTTA
CTCGTAATCACATATCGATGC
Found at i:8025689 original size:2 final size:2
Alignment explanation
Indices: 8025682--8025720 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
8025672 ATATAGTCGA
8025682 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8025721 CACTCATGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8028418 original size:24 final size:24
Alignment explanation
Indices: 8028391--8028439 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
8028381 TGAATTTAAA
8028391 GTAATTAGGTATAAGGACTAAATT
1 GTAATTAGGTATAAGGACTAAATT
*
8028415 GTAATTAGGTATAATGACTAAATT
1 GTAATTAGGTATAAGGACTAAATT
8028439 G
1 G
8028440 CATATAGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.04, G:0.20, T:0.35
Consensus pattern (24 bp):
GTAATTAGGTATAAGGACTAAATT
Found at i:8028616 original size:9 final size:9
Alignment explanation
Indices: 8028602--8028631 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
8028592 TTAATGTTTA
8028602 ATTATATAT
1 ATTATATAT
8028611 ATTATATAT
1 ATTATATAT
8028620 ATTATATTAT
1 ATTATA-TAT
8028630 AT
1 AT
8028632 AATAATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 15 0.75
10 5 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
ATTATATAT
Found at i:8031990 original size:8 final size:8
Alignment explanation
Indices: 8031979--8032003 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8031969 GTGTGTGTAC
8031979 GTGAGAGA
1 GTGAGAGA
8031987 GTGAGAGA
1 GTGAGAGA
8031995 GTGAGAGA
1 GTGAGAGA
8032003 G
1 G
8032004 AGAAGTAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.52, T:0.12
Consensus pattern (8 bp):
GTGAGAGA
Found at i:8032427 original size:18 final size:18
Alignment explanation
Indices: 8032404--8032441 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8032394 TTGAGGTTGG
8032404 GGATATGGATACGGGTAT
1 GGATATGGATACGGGTAT
* *
8032422 GGATATTGATATGGGTAT
1 GGATATGGATACGGGTAT
8032440 GG
1 GG
8032442 TGGCATGTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.39, T:0.32
Consensus pattern (18 bp):
GGATATGGATACGGGTAT
Found at i:8032894 original size:15 final size:15
Alignment explanation
Indices: 8032874--8032910 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 15
8032864 CCTGAGGTAA
8032874 ACCACCGCCATTTTT
1 ACCACCGCCATTTTT
8032889 ACCACCG---TTTTT
1 ACCACCGCCATTTTT
8032901 ACCACCGCCA
1 ACCACCGCCA
8032911 CCTTGATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 6
0.76 0.00 0.24
Matches are distributed among these distances:
12 12 0.63
15 7 0.37
ACGTcount: A:0.22, C:0.43, G:0.08, T:0.27
Consensus pattern (15 bp):
ACCACCGCCATTTTT
Found at i:8033232 original size:9 final size:9
Alignment explanation
Indices: 8033210--8033297 Score: 58
Period size: 9 Copynumber: 9.8 Consensus size: 9
8033200 GATGACGATG
8033210 ATCATCCAAC
1 ATCAT-CAAC
*
8033220 -TCATCACC
1 ATCATCAAC
*
8033228 ATCATCAAA
1 ATCATCAAC
*
8033237 ATCATCATC
1 ATCATCAAC
*
8033246 ATCATCAAG
1 ATCATCAAC
8033255 ATCA-CAATC
1 ATCATCAA-C
8033264 ATCATCCAA-
1 ATCAT-CAAC
* *
8033273 GTCATCATC
1 ATCATCAAC
8033282 ATCAT-AATC
1 ATCATCAA-C
8033291 ATCATCA
1 ATCATCA
8033298 CTGAAATCTT
Statistics
Matches: 59, Mismatches: 12, Indels: 14
0.69 0.14 0.16
Matches are distributed among these distances:
8 9 0.15
9 46 0.78
10 1 0.02
11 3 0.05
ACGTcount: A:0.40, C:0.32, G:0.02, T:0.26
Consensus pattern (9 bp):
ATCATCAAC
Found at i:8033233 original size:18 final size:18
Alignment explanation
Indices: 8033210--8033297 Score: 87
Period size: 18 Copynumber: 5.1 Consensus size: 18
8033200 GATGACGATG
* *
8033210 ATCATCCAACTCATCACC
1 ATCATCCAAATCATCATC
*
8033228 ATCATCAAAATCATCATC
1 ATCATCCAAATCATCATC
8033246 ATCAT-CAAGATCA-CAATC
1 ATCATCCAA-ATCATC-ATC
*
8033264 ATCATCCAAGTCATCATC
1 ATCATCCAAATCATCATC
8033282 ATCAT---AATCATCATC
1 ATCATCCAAATCATCATC
8033297 A
1 A
8033298 CTGAAATCTT
Statistics
Matches: 60, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
15 10 0.17
17 3 0.05
18 43 0.72
19 4 0.07
ACGTcount: A:0.40, C:0.32, G:0.02, T:0.26
Consensus pattern (18 bp):
ATCATCCAAATCATCATC
Found at i:8033243 original size:3 final size:3
Alignment explanation
Indices: 8033220--8033297 Score: 59
Period size: 3 Copynumber: 25.0 Consensus size: 3
8033210 ATCATCCAAC
* ** **
8033220 TCA TCA CCA TCA TCA AAA TCA TCA TCA TCA TCA AGA TCA -CAA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC-A TCA
*
8033265 TCA TCCAA GTCA TCA TCA TCA TAA TCA TCA TCA
1 TCA T-C-A -TCA TCA TCA TCA TCA TCA TCA TCA
8033298 CTGAAATCTT
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
2 1 0.02
3 51 0.88
4 3 0.05
5 2 0.03
6 1 0.02
ACGTcount: A:0.40, C:0.31, G:0.03, T:0.27
Consensus pattern (3 bp):
TCA
Found at i:8033531 original size:3 final size:3
Alignment explanation
Indices: 8033523--8033560 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
8033513 CTGACCACCC
*
8033523 TTG TTG TTG TT- TTGG TTG TTG TTC TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TT-G TTG TTG TTG TTG TTG TTG TTG TT
8033561 TCCACCTTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.06
3 27 0.87
4 2 0.06
ACGTcount: A:0.00, C:0.03, G:0.29, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:8047735 original size:23 final size:23
Alignment explanation
Indices: 8047704--8047757 Score: 81
Period size: 24 Copynumber: 2.3 Consensus size: 23
8047694 CCCTAGCTTT
*
8047704 ATCTCATTTATTTTTCAAAAATG
1 ATCTTATTTATTTTTCAAAAATG
*
8047727 ATCTTATTTTATTTTTCACAAATG
1 ATCTTA-TTTATTTTTCAAAAATG
8047751 ATCTTAT
1 ATCTTAT
8047758 CCTTTCTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.31, C:0.13, G:0.04, T:0.52
Consensus pattern (23 bp):
ATCTTATTTATTTTTCAAAAATG
Found at i:8047742 original size:24 final size:24
Alignment explanation
Indices: 8047710--8047757 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
8047700 CTTTATCTCA
8047710 TTTATTTTTCAAAAATGATCTTAT
1 TTTATTTTTCAAAAATGATCTTAT
*
8047734 TTTATTTTTCACAAATGATCTTAT
1 TTTATTTTTCAAAAATGATCTTAT
8047758 CCTTTCTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.04, T:0.54
Consensus pattern (24 bp):
TTTATTTTTCAAAAATGATCTTAT
Found at i:8049929 original size:15 final size:16
Alignment explanation
Indices: 8049863--8049930 Score: 63
Period size: 16 Copynumber: 4.2 Consensus size: 16
8049853 ATGCGTTCTC
*
8049863 TATAACAATTATTT-T
1 TATAATAATTATTTAT
8049878 TATAATAA-TATTTCAT
1 TATAATAATTATTT-AT
8049894 TATAATAATTAAATTTAT
1 TATAATAATT--ATTTAT
8049912 TATAA-AATTGATTT-T
1 TATAATAATT-ATTTAT
8049927 TATA
1 TATA
8049931 TTTTATTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
14 5 0.11
15 12 0.26
16 13 0.28
17 5 0.11
18 7 0.15
19 4 0.09
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (16 bp):
TATAATAATTATTTAT
Found at i:8049960 original size:17 final size:17
Alignment explanation
Indices: 8049940--8049973 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8049930 ATTTTATTTT
* *
8049940 TTTTCTTTTATATCAAC
1 TTTTCATTTATAACAAC
8049957 TTTTCATTTATAACAAC
1 TTTTCATTTATAACAAC
8049974 AATCATAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.18, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTTCATTTATAACAAC
Found at i:8052812 original size:19 final size:19
Alignment explanation
Indices: 8052788--8052843 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 19
8052778 TAGTTTGAAG
8052788 AAAAATATTAAGCTATAAAAA
1 AAAAATATTAAGC--TAAAAA
* *
8052809 AAATGAAAATTAAGCAAAAAA
1 AAA--AATATTAAGCTAAAAA
8052830 AAAAATATTAAGCT
1 AAAAATATTAAGCT
8052844 TGATTAACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
19 9 0.31
21 11 0.38
23 9 0.31
ACGTcount: A:0.66, C:0.05, G:0.07, T:0.21
Consensus pattern (19 bp):
AAAAATATTAAGCTAAAAA
Found at i:8052933 original size:14 final size:14
Alignment explanation
Indices: 8052914--8052943 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8052904 ATTTTCAACT
8052914 TTATAATATGTTTA
1 TTATAATATGTTTA
8052928 TTATAATATGTTTA
1 TTATAATATGTTTA
8052942 TT
1 TT
8052944 TTATTTATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (14 bp):
TTATAATATGTTTA
Found at i:8053317 original size:6 final size:6
Alignment explanation
Indices: 8053306--8053335 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
8053296 TTTAAAACTA
8053306 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
8053336 GATGTATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:8053841 original size:19 final size:20
Alignment explanation
Indices: 8053800--8053841 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
8053790 TTAATCATAT
* *
8053800 TTTATTAAATGAAAATAATA
1 TTTAATAAATGAAAATAACA
*
8053820 TTTAATAAAT-AAAATTACA
1 TTTAATAAATGAAAATAACA
8053839 TTT
1 TTT
8053842 GTAATAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
TTTAATAAATGAAAATAACA
Found at i:8054752 original size:21 final size:22
Alignment explanation
Indices: 8054720--8054763 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
8054710 AATTTAAATT
*
8054720 TTTTTTCTTTTAACTTTCTTTC
1 TTTTTTCTTTTAACTTTCATTC
*
8054742 TTTTTTC-TTTATCTTTCATTC
1 TTTTTTCTTTTAACTTTCATTC
8054763 T
1 T
8054764 CCTCTACTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTTTCTTTTAACTTTCATTC
Found at i:8055753 original size:2 final size:2
Alignment explanation
Indices: 8055746--8055777 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8055736 AGTAATTAAG
8055746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8055778 TAAAAAGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8056317 original size:2 final size:2
Alignment explanation
Indices: 8056305--8056336 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
8056295 ACCTTTGTTT
8056305 TA TA TA GTA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA T
8056337 TTCAACATAC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8057300 original size:2 final size:2
Alignment explanation
Indices: 8057295--8057326 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8057285 TATAAATACC
8057295 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8057327 TTAAGAAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8058718 original size:20 final size:17
Alignment explanation
Indices: 8058697--8058729 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8058687 AAAAATTATT
8058697 TATTT-ATTTTTTATAG
1 TATTTAATTTTTTATAG
8058713 TATTTAATTTTTTATAG
1 TATTTAATTTTTTATAG
8058730 AATATTGTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TATTTAATTTTTTATAG
Found at i:8061790 original size:33 final size:34
Alignment explanation
Indices: 8061733--8061800 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
8061723 TTGTAATGGC
*
8061733 AGATATTCCCAGATTTTTCATTCCAGAAGTCAAA
1 AGATATTCCCAGATTTTTCATTCCACAAGTCAAA
* *
8061767 AGATATTCCCAGA-TTTTCTTTCCACAAGTTAAA
1 AGATATTCCCAGATTTTTCATTCCACAAGTCAAA
8061800 A
1 A
8061801 AGCTCAACTG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
33 18 0.58
34 13 0.42
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (34 bp):
AGATATTCCCAGATTTTTCATTCCACAAGTCAAA
Found at i:8061802 original size:34 final size:34
Alignment explanation
Indices: 8061733--8061802 Score: 97
Period size: 34 Copynumber: 2.1 Consensus size: 34
8061723 TTGTAATGGC
* *
8061733 AGATATTCCCAGATTTTTCATTCCAGAAGTCAAA
1 AGATATTCCCAGATTTTTCATTCCACAAGTAAAA
*
8061767 AGATATTCCCAGA-TTTTCTTTCCACAAGTTAAAA
1 AGATATTCCCAGATTTTTCATTCCACAAG-TAAAA
8061801 AG
1 AG
8061803 CTCAACTGGC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 13 0.41
34 19 0.59
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33
Consensus pattern (34 bp):
AGATATTCCCAGATTTTTCATTCCACAAGTAAAA
Found at i:8068360 original size:21 final size:23
Alignment explanation
Indices: 8068325--8068376 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
8068315 TTCCAGATTA
8068325 TTTCTCTCCTATTTCTCCTTTCC
1 TTTCTCTCCTATTTCTCCTTTCC
* *
8068348 TTTCTC-CCT-TTTCTTCTTTCT
1 TTTCTCTCCTATTTCTCCTTTCC
*
8068369 TTTTTCTC
1 TTTCTCTC
8068377 ACAGCAGCAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 15 0.60
22 4 0.16
23 6 0.24
ACGTcount: A:0.02, C:0.35, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTCTCTCCTATTTCTCCTTTCC
Found at i:8072170 original size:20 final size:20
Alignment explanation
Indices: 8072094--8072170 Score: 50
Period size: 20 Copynumber: 3.8 Consensus size: 20
8072084 TTAATTTATC
* *
8072094 ATTTTTATATATATTTT-TAG
1 ATTTTTA-AAATATTTTATTG
**
8072114 ATTTTTAAAAAATAAATTA-TG
1 ATTTTT--AAAATATTTTATTG
* *
8072135 ATATTTAAAATCTTTTATTG
1 ATTTTTAAAATATTTTATTG
*
8072155 ATTTTTAATATATTTT
1 ATTTTTAAAATATTTT
8072171 TTAAATTGTG
Statistics
Matches: 42, Mismatches: 11, Indels: 8
0.69 0.18 0.13
Matches are distributed among these distances:
19 8 0.19
20 21 0.50
21 12 0.29
22 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.57
Consensus pattern (20 bp):
ATTTTTAAAATATTTTATTG
Found at i:8073417 original size:33 final size:34
Alignment explanation
Indices: 8073345--8073418 Score: 132
Period size: 34 Copynumber: 2.2 Consensus size: 34
8073335 TTGAATATTT
8073345 ATAAAATTTAAATAAATTGTTGTGATAATATAAA
1 ATAAAATTTAAATAAATTGTTGTGATAATATAAA
8073379 ATAAAATTTAAATAAATTGTTGTGAT-ATATAAA
1 ATAAAATTTAAATAAATTGTTGTGATAATATAAA
*
8073412 GTAAAAT
1 ATAAAAT
8073419 AATATCATAT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
33 13 0.33
34 26 0.67
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (34 bp):
ATAAAATTTAAATAAATTGTTGTGATAATATAAA
Found at i:8080169 original size:28 final size:28
Alignment explanation
Indices: 8080138--8080194 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
8080128 ATTCGATGAC
*
8080138 AATCAATATTTTTCAATAACAATCATTT
1 AATCAATATTATTCAATAACAATCATTT
* * *
8080166 AATCATTATTATTCAATAGCAGTCATTT
1 AATCAATATTATTCAATAACAATCATTT
8080194 A
1 A
8080195 TTTATTCAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.40, C:0.14, G:0.04, T:0.42
Consensus pattern (28 bp):
AATCAATATTATTCAATAACAATCATTT
Found at i:8081675 original size:3 final size:3
Alignment explanation
Indices: 8081649--8081735 Score: 53
Period size: 3 Copynumber: 30.3 Consensus size: 3
8081639 TTATTTAATT
* * *
8081649 TAA TAA T-A TAA T-A TCAA TTA -AA TAA TAA TAA CAA TAA CAA TAA
1 TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
8081692 TAA TTA -AA T-A TAA -AA CT-A TAA TAA TAAA TAA TAA GAA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA T-AA TAA TAA TAA TAA TAA
8081735 T
1 T
8081736 TTAATATATT
Statistics
Matches: 64, Mismatches: 10, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
2 11 0.17
3 48 0.75
4 5 0.08
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:8081695 original size:21 final size:19
Alignment explanation
Indices: 8081669--8081735 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
8081659 ATATCAATTA
8081669 AATAATAATAACAATAACAAT
1 AATAATAATAA-AATAA-AAT
8081690 AATAAT--TAAATATAAAACT
1 AATAATAATAAA-ATAAAA-T
*
8081709 -ATAATAAT-AAATAATAAG
1 AATAATAATAAAATAA-AAT
8081727 AATAATAAT
1 AATAATAAT
8081736 TTAATATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
18 12 0.31
19 20 0.51
20 1 0.03
21 6 0.15
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (19 bp):
AATAATAATAAAATAAAAT
Found at i:8083359 original size:25 final size:24
Alignment explanation
Indices: 8083331--8083378 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
8083321 AATGCTAGAA
8083331 AATTTCTATAACAATTGCCTTTTAC
1 AATTT-TATAACAATTGCCTTTTAC
*
8083356 AATTTTGTAACAATTGCCTTTTA
1 AATTTTATAACAATTGCCTTTTA
8083379 TAATATCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.31, C:0.17, G:0.06, T:0.46
Consensus pattern (24 bp):
AATTTTATAACAATTGCCTTTTAC
Found at i:8086615 original size:8 final size:8
Alignment explanation
Indices: 8086602--8086629 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
8086592 TTTAAAAATG
8086602 TTTATAAA
1 TTTATAAA
8086610 TTTATAAA
1 TTTATAAA
8086618 TTTATAAA
1 TTTATAAA
8086626 TTTA
1 TTTA
8086630 AAAAAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
TTTATAAA
Found at i:8096644 original size:44 final size:46
Alignment explanation
Indices: 8096594--8096682 Score: 121
Period size: 44 Copynumber: 2.0 Consensus size: 46
8096584 TACAACATCT
8096594 ATTCCATTCAACCAAACACA-AAAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACA-ATAAAATTACTGATTACAGCTCTATTCC
* * *
8096638 ATTCCATTCAACTAAACAATTAAATTATTGATTACAGCTCTATTC
1 ATTCCATTCAACCAAACAATAAAATTACTGATTACAGCTCTATTC
8096683 TATTACAGCC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
43 1 0.03
44 22 0.56
45 1 0.03
46 15 0.38
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (46 bp):
ATTCCATTCAACCAAACAATAAAATTACTGATTACAGCTCTATTCC
Found at i:8096689 original size:16 final size:16
Alignment explanation
Indices: 8096668--8096706 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 16
8096658 TAAATTATTG
8096668 ATTACAG-CTCTATTCT
1 ATTACAGCCT-TATTCT
8096684 ATTACAGCCTTATTCT
1 ATTACAGCCTTATTCT
8096700 ATTACAG
1 ATTACAG
8096707 TGAACCAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 20 0.91
17 2 0.09
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (16 bp):
ATTACAGCCTTATTCT
Found at i:8098160 original size:15 final size:16
Alignment explanation
Indices: 8098133--8098162 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8098123 TTGAAATTGT
8098133 TATAAATTTTTAAAAA
1 TATAAATTTTTAAAAA
8098149 TATAAA-TTTTAAAA
1 TATAAATTTTTAAAA
8098163 TTTTTATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
TATAAATTTTTAAAAA
Found at i:8098185 original size:19 final size:19
Alignment explanation
Indices: 8098161--8098205 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
8098151 TAAATTTTAA
*
8098161 AATTTTTATAATTATTTTG
1 AATTTTTAAAATTATTTTG
*
8098180 AATTTTGAAAATTATTTTG
1 AATTTTTAAAATTATTTTG
8098199 AATTTTT
1 AATTTTT
8098206 TTGGTAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (19 bp):
AATTTTTAAAATTATTTTG
Found at i:8098910 original size:66 final size:70
Alignment explanation
Indices: 8098834--8098965 Score: 191
Period size: 70 Copynumber: 1.9 Consensus size: 70
8098824 ATAAACAATA
* **
8098834 TAATGGTTTTGCCTTTTAAC-TTA-ATGA-GTAAAT-ATTATCAAAACAACGTAGTTTTGCCTTT
1 TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATGATTATCAAAACAACGTAGTTTTGCCTTT
8098895 TAATT
66 TAATT
* *
8098900 TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATGTTTATCAAAACAGCGTAGTTTTGCCTTT
1 TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATGATTATCAAAACAACGTAGTTTTGCCTTT
8098965 T
66 T
8098966 CTTATTCGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
66 19 0.33
67 3 0.05
68 2 0.04
69 6 0.11
70 27 0.47
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.43
Consensus pattern (70 bp):
TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAATGATTATCAAAACAACGTAGTTTTGCCTTT
TAATT
Found at i:8113154 original size:40 final size:43
Alignment explanation
Indices: 8113097--8113188 Score: 111
Period size: 40 Copynumber: 2.2 Consensus size: 43
8113087 TATATAGAGT
* **
8113097 ACGCCAT-AAAGTCTAACATAATGTGACAAAGGCTAACA-AA-
1 ACGCCATAAAAGTCTAACAAAATGCCACAAAGGCTAACAGAAC
* *
8113137 ATGCCATAAAAG-CTAACAAAATGCCATAAAGGCTAACAGAAC
1 ACGCCATAAAAGTCTAACAAAATGCCACAAAGGCTAACAGAAC
8113179 ACGCCATAAA
1 ACGCCATAAA
8113189 GGCCAAATCA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
40 28 0.65
41 6 0.14
42 9 0.21
ACGTcount: A:0.49, C:0.22, G:0.14, T:0.15
Consensus pattern (43 bp):
ACGCCATAAAAGTCTAACAAAATGCCACAAAGGCTAACAGAAC
Found at i:8113187 original size:22 final size:21
Alignment explanation
Indices: 8113124--8113228 Score: 101
Period size: 20 Copynumber: 5.0 Consensus size: 21
8113114 ATAATGTGAC
8113124 AAAGGCTAACA-AAATGCCAT
1 AAAGGCTAACAGAAATGCCAT
*
8113144 AAAAGCTAACA-AAATGCCAT
1 AAAGGCTAACAGAAATGCCAT
*
8113164 AAAGGCTAACAGAACACGCCAT
1 AAAGGCTAACAGAA-ATGCCAT
* *
8113186 AAAGGCCAAATCAG-AATAGATCAT
1 AAAGG-CTAA-CAGAAAT-G-CCAT
8113210 AAAGGCTAACAG-AATGCCA
1 AAAGGCTAACAGAAATGCCA
8113229 CCCAGGCACC
Statistics
Matches: 71, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
20 31 0.44
21 3 0.04
22 18 0.25
23 8 0.11
24 11 0.15
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (21 bp):
AAAGGCTAACAGAAATGCCAT
Found at i:8114448 original size:18 final size:18
Alignment explanation
Indices: 8114414--8114448 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8114404 TAAACACAAA
*
8114414 GAAATAAAAATCGAAAAT
1 GAAATAAAAATAGAAAAT
*
8114432 GAAATAAAAATATAAAA
1 GAAATAAAAATAGAAAA
8114449 ATGCTATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (18 bp):
GAAATAAAAATAGAAAAT
Found at i:8117723 original size:22 final size:22
Alignment explanation
Indices: 8117695--8117800 Score: 79
Period size: 22 Copynumber: 4.8 Consensus size: 22
8117685 TTGTATGGGT
* *
8117695 TCAACACTTTAATTCTCTCTGA
1 TCAACACTTCAATGCTCTCTGA
*
8117717 TCAACACTTCAATGCTCTTTGA
1 TCAACACTTCAATGCTCTCTGA
* * *
8117739 T-AAGCATTTCAATGCTCTTTGC
1 TCAA-CACTTCAATGCTCTCTGA
* * * *
8117761 TTAGCACTTCAGTGCTCTCTGT
1 TCAACACTTCAATGCTCTCTGA
* * *
8117783 TTAGCACTTCGATGCTCT
1 TCAACACTTCAATGCTCT
8117801 TTGGTATGGT
Statistics
Matches: 70, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
21 2 0.03
22 67 0.96
23 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (22 bp):
TCAACACTTCAATGCTCTCTGA
Found at i:8124202 original size:28 final size:28
Alignment explanation
Indices: 8124133--8124233 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
8124123 GACAAGATTG
* * * *
8124133 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
8124163 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
8124191 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
8124220 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
8124234 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:8132059 original size:28 final size:28
Alignment explanation
Indices: 8131990--8132090 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
8131980 GACAAGATTG
* * * *
8131990 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
8132020 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
8132048 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
8132077 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
8132091 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:8134228 original size:19 final size:19
Alignment explanation
Indices: 8134200--8134247 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
8134190 AGCTAATTTT
*
8134200 GGTATTGGTAAATTTCAGA
1 GGTATCGGTAAATTTCAGA
** *
8134219 GGTATCGGTACCTTTCAGG
1 GGTATCGGTAAATTTCAGA
8134238 GGTATCGGTA
1 GGTATCGGTA
8134248 CCTATTTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.23, C:0.12, G:0.31, T:0.33
Consensus pattern (19 bp):
GGTATCGGTAAATTTCAGA
Found at i:8134248 original size:19 final size:19
Alignment explanation
Indices: 8134212--8134250 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8134202 TATTGGTAAA
8134212 TTTCAGAGGTATCGGTACC
1 TTTCAGAGGTATCGGTACC
*
8134231 TTTCAGGGGTATCGGTACC
1 TTTCAGAGGTATCGGTACC
8134250 T
1 T
8134251 ATTTCAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.18, C:0.21, G:0.28, T:0.33
Consensus pattern (19 bp):
TTTCAGAGGTATCGGTACC
Found at i:8138707 original size:80 final size:80
Alignment explanation
Indices: 8138623--8138771 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
8138613 TATGGTAACC
* * * *
8138623 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
8138687 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
8138703 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
8138768 CCGG
66 CCGG
8138772 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:8138713 original size:40 final size:38
Alignment explanation
Indices: 8138664--8138771 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
8138654 ATCACGATTT
*
8138664 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
8138704 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
8138744 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
8138772 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:8142763 original size:17 final size:17
Alignment explanation
Indices: 8142741--8142773 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8142731 AATTAAAAAT
*
8142741 TTTATGTCTTGTATTCA
1 TTTATGTCTTGCATTCA
8142758 TTTATGTCTTGCATTC
1 TTTATGTCTTGCATTC
8142774 TTCTGATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.12, T:0.58
Consensus pattern (17 bp):
TTTATGTCTTGCATTCA
Found at i:8146795 original size:30 final size:31
Alignment explanation
Indices: 8146735--8146795 Score: 72
Period size: 30 Copynumber: 2.0 Consensus size: 31
8146725 ATAAGATTTA
*
8146735 ATATTAAATTTAATCTAATATTTATCAAGTT
1 ATATTAAATTTAATCTAATATTGATCAAGTT
* *
8146766 ATATT-AATTTAATATTAA-ATTGATTAAGTT
1 ATATTAAATTTAAT-CTAATATTGATCAAGTT
8146796 TAATCATAGT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (31 bp):
ATATTAAATTTAATCTAATATTGATCAAGTT
Found at i:8148330 original size:46 final size:46
Alignment explanation
Indices: 8148217--8148401 Score: 264
Period size: 46 Copynumber: 4.0 Consensus size: 46
8148207 TTATCTTTGA
* * * * * *
8148217 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
*
8148262 CATGTTTCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* ***
8148308 CACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
8148354 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
8148400 CA
1 CA
8148402 GAGAGCACAC
Statistics
Matches: 123, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 36 0.29
46 87 0.71
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
Found at i:8148383 original size:92 final size:91
Alignment explanation
Indices: 8148222--8148401 Score: 297
Period size: 92 Copynumber: 2.0 Consensus size: 91
8148212 TTTGACATGA
* * * *
8148222 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTCTGTCATGTTTCCATGGTATCTTTCAACC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCGTCATGTTGCCATGGTATCTTTCAACC
8148287 ATGGTCTTATTCATTTCATATCACGT
66 ATGGTCTTATTCATTTCATATCACGT
* *
8148313 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTT-CCGTCATGTTGCCATGGTATCTTTCAAC
8148378 CATGGTCTTATTCATTTCATATCA
65 CATGGTCTTATTCATTTCATATCA
8148402 GAGAGCACAC
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
91 32 0.39
92 50 0.61
ACGTcount: A:0.20, C:0.24, G:0.13, T:0.43
Consensus pattern (91 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCGTCATGTTGCCATGGTATCTTTCAACC
ATGGTCTTATTCATTTCATATCACGT
Found at i:8150882 original size:30 final size:30
Alignment explanation
Indices: 8150815--8150882 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
8150805 TCCCCTTAAA
* * *
8150815 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
8150845 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
8150874 AGTATTTAC
1 A-TATTTAC
8150883 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Done.