Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 39 of 325
Found at i:9607855 original size:21 final size:22
Alignment explanation
Indices: 9607809--9607871 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 22
9607799 CACATCAGTC
* *
9607809 AAAAAATAA-TTGCAAAAAATGT
1 AAAAAA-AATTTGAAAAAAAAGT
9607831 AAAAAAAAATTT-AAAAAAAAG-
1 -AAAAAAAATTTGAAAAAAAAGT
*
9607852 AAAAAATATTTGAAAAAAAA
1 AAAAAAAATTTGAAAAAAAA
9607872 TATTAATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
20 10 0.29
21 8 0.23
22 9 0.26
23 8 0.23
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.19
Consensus pattern (22 bp):
AAAAAAAATTTGAAAAAAAAGT
Found at i:9608096 original size:23 final size:23
Alignment explanation
Indices: 9608066--9608118 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
9608056 ATTAACCTTG
* *
9608066 GAAATTTTTATTTTTATTTTTTT
1 GAAATTTTGATTTTGATTTTTTT
*
9608089 GAAATTTTGCTTTTGATTTTTTT
1 GAAATTTTGATTTTGATTTTTTT
*
9608112 AAAATTT
1 GAAATTT
9608119 ATTTTCTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.25, C:0.02, G:0.08, T:0.66
Consensus pattern (23 bp):
GAAATTTTGATTTTGATTTTTTT
Found at i:9612047 original size:32 final size:33
Alignment explanation
Indices: 9612011--9612075 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
9612001 ATGCAAACCG
*
9612011 CAAAAACAAAA-CCTAAATCTCATAGAGTTTTC
1 CAAAAACAAAATCCTAAATCTCATACAGTTTTC
* *
9612043 CAAAAACAAAATCCTGACTCTCATACAGTTTTC
1 CAAAAACAAAATCCTAAATCTCATACAGTTTTC
9612076 TTAAAAGTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 11 0.38
33 18 0.62
ACGTcount: A:0.43, C:0.25, G:0.06, T:0.26
Consensus pattern (33 bp):
CAAAAACAAAATCCTAAATCTCATACAGTTTTC
Found at i:9612457 original size:12 final size:12
Alignment explanation
Indices: 9612440--9612465 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
9612430 GTTACAACCC
9612440 ATTTTGATGATT
1 ATTTTGATGATT
9612452 ATTTTGATGATT
1 ATTTTGATGATT
9612464 AT
1 AT
9612466 GTATGAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (12 bp):
ATTTTGATGATT
Found at i:9613091 original size:29 final size:30
Alignment explanation
Indices: 9613039--9613102 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 30
9613029 TATATTTGTA
*
9613039 AAAATTTATAAATAATTTTAATAAATAAAT
1 AAAATTTATAAATAATATTAATAAATAAAT
*
9613069 AAAATTTA-AAATATATATT-ATAATTAAAT
1 AAAATTTATAAATA-ATATTAATAAATAAAT
9613098 AAAAT
1 AAAAT
9613103 AATTTTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 19 0.61
30 12 0.39
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (30 bp):
AAAATTTATAAATAATATTAATAAATAAAT
Found at i:9621256 original size:7 final size:7
Alignment explanation
Indices: 9621240--9621277 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
9621230 GACAGAAGTA
9621240 TTTAGGG
1 TTTAGGG
*
9621247 TTTAGAG
1 TTTAGGG
9621254 TTTAGGG
1 TTTAGGG
9621261 TTTAGGG
1 TTTAGGG
*
9621268 TTTAAGG
1 TTTAGGG
9621275 TTT
1 TTT
9621278 TAAAAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.34, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:9622656 original size:29 final size:29
Alignment explanation
Indices: 9622622--9622696 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 29
9622612 TAAAAAAAAC
*
9622622 TAATAAAAATTATAAAAATTA-TTAAATTT
1 TAATAAAAATTATAAAAA-TACTTAAAATT
9622651 TAATAAAAA-TATAAAAATACTTAAAATT
1 TAATAAAAATTATAAAAATACTTAAAATT
* *
9622679 TATTAAAAATTACAAAAA
1 TAATAAAAATTATAAAAA
9622697 AATTATAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 2 0.05
28 23 0.56
29 16 0.39
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.35
Consensus pattern (29 bp):
TAATAAAAATTATAAAAATACTTAAAATT
Found at i:9622706 original size:10 final size:10
Alignment explanation
Indices: 9622626--9622768 Score: 52
Period size: 9 Copynumber: 14.6 Consensus size: 10
9622616 AAAAACTAAT
9622626 AAAAATTAT-
1 AAAAATTATA
9622635 AAAAATTAT-
1 AAAAATTATA
* *
9622644 -TAAATTTTA
1 AAAAATTATA
*
9622653 ATAAAAATAT-
1 A-AAAATTATA
*
9622663 AAAAA-TACTT
1 AAAAATTA-TA
* *
9622673 AAAATTTATT
1 AAAAATTATA
*
9622683 AAAAATTACAA
1 AAAAATTA-TA
9622694 AAAAATTATA
1 AAAAATTATA
*
9622704 AAATA-TAT-
1 AAAAATTATA
* *
9622712 AGAAATATAGAA
1 AAAAAT-TA-TA
9622724 AAAAATTA-A
1 AAAAATTATA
9622733 AAAAATT-TA
1 AAAAATTATA
* * *
9622742 TAAAGTTGTA
1 AAAAATTATA
9622752 AGAAAATTATA
1 A-AAAATTATA
9622763 AAAAAT
1 AAAAAT
9622769 GTAAAGAAAT
Statistics
Matches: 100, Mismatches: 20, Indels: 27
0.68 0.14 0.18
Matches are distributed among these distances:
8 11 0.11
9 31 0.31
10 28 0.28
11 25 0.25
12 5 0.05
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.31
Consensus pattern (10 bp):
AAAAATTATA
Found at i:9622766 original size:39 final size:39
Alignment explanation
Indices: 9622723--9622805 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 39
9622713 GAAATATAGA
* * *
9622723 AAAAAAT-TAAAAAAATTTATAAAGTT-GTAAGAAAATTAT
1 AAAAAATGTAAAAAAA--TATAAAATTCGTAAAAAAAATAT
*
9622762 AAAAAATGTAAAGAAATATAAAATTCGTAAAAAAAATAT
1 AAAAAATGTAAAAAAATATAAAATTCGTAAAAAAAATAT
9622801 AAAAA
1 AAAAA
9622806 TTATTGTACC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 8 0.21
39 23 0.61
40 7 0.18
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.25
Consensus pattern (39 bp):
AAAAAATGTAAAAAAATATAAAATTCGTAAAAAAAATAT
Found at i:9622766 original size:40 final size:38
Alignment explanation
Indices: 9622683--9622805 Score: 90
Period size: 39 Copynumber: 3.1 Consensus size: 38
9622673 AAAATTTATT
* * *
9622683 AAAAATTACAAAAAAATTATAAAATATATAG-AAATATAGAA
1 AAAAATT--AAAAAAATTATAAATTGTA-AGAAAAT-TATAA
9622724 AAAAATTAAAAAAATTTATAAAGTTGTAAGAAAATTAT-A
1 AAAAATTAAAAAAA-TTATAAA-TTGTAAGAAAATTATAA
* * *
9622763 AAAAATGTAAAGAAA-TATAAAATTCGTAAAAAAAATATAA
1 AAAAAT-TAAAAAAATTAT-AAATT-GTAAGAAAATTATAA
9622803 AAA
1 AAA
9622806 TTATTGTACC
Statistics
Matches: 69, Mismatches: 6, Indels: 15
0.77 0.07 0.17
Matches are distributed among these distances:
38 5 0.07
39 28 0.41
40 22 0.32
41 14 0.20
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.25
Consensus pattern (38 bp):
AAAAATTAAAAAAATTATAAATTGTAAGAAAATTATAA
Found at i:9622993 original size:10 final size:10
Alignment explanation
Indices: 9622980--9623053 Score: 66
Period size: 10 Copynumber: 7.6 Consensus size: 10
9622970 TTTTTATGCA
9622980 TTTTATAATT
1 TTTTATAATT
*
9622990 TTTTATGA-T
1 TTTTATAATT
**
9622999 TTTTATAAAA
1 TTTTATAATT
9623009 TTTTATAATT
1 TTTTATAATT
9623019 TTTTAT-ATT
1 TTTTATAATT
9623028 TTTTA-ATATT
1 TTTTATA-ATT
*
9623038 TTTAAT-ATT
1 TTTTATAATT
9623047 CTTTTAT
1 -TTTTAT
9623054 TAAAATTCAA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
9 19 0.37
10 33 0.63
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (10 bp):
TTTTATAATT
Found at i:9622994 original size:19 final size:19
Alignment explanation
Indices: 9622970--9623041 Score: 69
Period size: 19 Copynumber: 3.8 Consensus size: 19
9622960 TTAAAGGGTC
9622970 TTTTTATGCA-TTTTATAAT
1 TTTTTATG-ATTTTTATAAT
*
9622989 TTTTTATGATTTTTATAAA
1 TTTTTATGATTTTTATAAT
* *
9623008 ATTTTATAATTTTT-TATAT
1 TTTTTATGATTTTTATA-AT
9623027 TTTTTAAT-ATTTTTA
1 TTTTT-ATGATTTTTA
9623042 ATATTCTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 3 0.07
19 39 0.89
20 2 0.05
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTTTATGATTTTTATAAT
Found at i:9623011 original size:29 final size:27
Alignment explanation
Indices: 9622979--9623043 Score: 96
Period size: 29 Copynumber: 2.4 Consensus size: 27
9622969 CTTTTTATGC
9622979 ATTTTATAATTTTTTATGATTTTTATAAA
1 ATTTTATAATTTTTTAT-ATTTTT-TAAA
*
9623008 ATTTTATAATTTTTTATATTTTTTAAT
1 ATTTTATAATTTTTTATATTTTTTAAA
9623035 ATTTT-TAAT
1 ATTTTATAAT
9623044 ATTCTTTTAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 4 0.11
27 8 0.23
28 6 0.17
29 17 0.49
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (27 bp):
ATTTTATAATTTTTTATATTTTTTAAA
Found at i:9623045 original size:19 final size:17
Alignment explanation
Indices: 9622980--9623052 Score: 56
Period size: 19 Copynumber: 3.8 Consensus size: 17
9622970 TTTTTATGCA
9622980 TTTTATAATTTTTTATGATT
1 TTTTAT-ATTTTTTA--ATT
* *
9623000 TTTATAAAATTTTATAATT
1 TTT-T-ATATTTTTTAATT
9623019 TTTTATATTTTTTAATAT
1 TTTTATATTTTTTAAT-T
9623037 TTTTAATATTCTTTTA
1 TTTT-ATATT-TTTTA
9623053 TTAAAATTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
17 10 0.23
18 6 0.14
19 11 0.25
20 8 0.18
21 8 0.18
22 1 0.02
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (17 bp):
TTTTATATTTTTTAATT
Found at i:9624568 original size:72 final size:71
Alignment explanation
Indices: 9624420--9624630 Score: 171
Period size: 72 Copynumber: 2.9 Consensus size: 71
9624410 GTAGAGCTAA
* * * * * * *
9624420 AGCCCCTTAAA-ATTTGTC-AATTTACATATTGACTTCTACATTATATATCTAAAAAGTGATAAT
1 AGCCCCTTAAATATTT-TCAAATTT-CATTTTAACCTCCACAATAAATATCTAAAAAATGATAAT
* *
9624483 TCATGTTT
64 TTATATTT
* *
9624491 TGCCCCTTCTAAAT-TTTGTCAAGTTTCATTTTAA-CT-CACAATAAATATCTAAAAACATGATA
1 AGCCCC-T-TAAATATTT-TCAAATTTCATTTTAACCTCCACAATAAATATCTAAAAA-ATGATA
*
9624553 ATTTTTATTT
62 ATTTATATTT
** ** *
9624563 AGCCCCTTAAATATTTTCAAATTTTGTTTTAACCTCCACTTTAAACATCTAAAAATATGATAATT
1 AGCCCCTTAAATATTTTCAAATTTCATTTTAACCTCCACAATAAATATCTAAAAA-ATGATAATT
9624628 TAT
65 TAT
9624631 GTTGCCCCCA
Statistics
Matches: 111, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
70 18 0.16
71 27 0.24
72 46 0.41
73 16 0.14
74 4 0.04
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (71 bp):
AGCCCCTTAAATATTTTCAAATTTCATTTTAACCTCCACAATAAATATCTAAAAAATGATAATTT
ATATTT
Found at i:9627058 original size:16 final size:17
Alignment explanation
Indices: 9627037--9627069 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
9627027 TTACAAAAAT
9627037 ATTATAAAAATA-ATTA
1 ATTATAAAAATAGATTA
9627053 ATTATAAAAATAGATTA
1 ATTATAAAAATAGATTA
9627070 GGGAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (17 bp):
ATTATAAAAATAGATTA
Found at i:9629797 original size:17 final size:18
Alignment explanation
Indices: 9629777--9629820 Score: 65
Period size: 17 Copynumber: 2.5 Consensus size: 18
9629767 ATAAATTTTA
9629777 TATATATTTAAAAAAA-T
1 TATATATTTAAAAAAATT
9629794 TATAT-TATTAAAAAAATT
1 TATATAT-TTAAAAAAATT
9629812 TATATATTT
1 TATATATTT
9629821 TTATATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.04
17 14 0.58
18 8 0.33
19 1 0.04
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TATATATTTAAAAAAATT
Found at i:9629807 original size:18 final size:19
Alignment explanation
Indices: 9629774--9629818 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
9629764 CTTATAAATT
*
9629774 TTATATATATTTAAAAAAA
1 TTATATATATTAAAAAAAA
*
9629793 TTATAT-TATTAAAAAAAT
1 TTATATATATTAAAAAAAA
9629811 TTATATAT
1 TTATATAT
9629819 TTTTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 16 0.70
19 7 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TTATATATATTAAAAAAAA
Found at i:9629825 original size:10 final size:10
Alignment explanation
Indices: 9629810--9629939 Score: 73
Period size: 9 Copynumber: 13.5 Consensus size: 10
9629800 ATTAAAAAAA
9629810 TTTATATATT
1 TTTATATATT
9629820 TTTATATA-T
1 TTTATATATT
9629829 TTTAGTA-A-T
1 TTTA-TATATT
*
9629838 TTT-CATATT
1 TTTATATATT
*
9629847 TTAATA-ATT
1 TTTATATATT
*
9629856 TTTCATA-AAT
1 TTT-ATATATT
**
9629866 TGAATATATT
1 TTTATATATT
9629876 TTTATATATT
1 TTTATATATT
9629886 TCTATATATATT
1 T-T-TATATATT
**
9629898 GCTATA-ATT
1 TTTATATATT
9629907 TTTA-ATATT
1 TTTATATATT
9629916 TTTAT-TGATT
1 TTTATAT-ATT
*
9629926 TTAATA-ATT
1 TTTATATATT
9629935 TTTAT
1 TTTAT
9629940 CTTTTTTTTC
Statistics
Matches: 92, Mismatches: 16, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
7 1 0.01
8 2 0.02
9 41 0.45
10 39 0.42
11 1 0.01
12 8 0.09
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (10 bp):
TTTATATATT
Found at i:9629839 original size:19 final size:19
Alignment explanation
Indices: 9629817--9629939 Score: 87
Period size: 18 Copynumber: 6.4 Consensus size: 19
9629807 AAATTTATAT
*
9629817 ATTTTTATATATTTTAGTA
1 ATTTTTATATATTTTAATA
*
9629836 A-TTTT-CATATTTTAATA
1 ATTTTTATATATTTTAATA
* *
9629853 ATTTTTCATA-AATTGAATA
1 ATTTTT-ATATATTTTAATA
9629872 TATTTTTATATATTTCTATATA
1 -ATTTTTATATATTT-TA-ATA
**
9629894 TATTGCTATA-ATTTTTAAT-
1 -ATTTTTATATA-TTTTAATA
9629913 ATTTTTAT-TGATTTTAATA
1 ATTTTTATAT-ATTTTAATA
9629932 ATTTTTAT
1 ATTTTTAT
9629940 CTTTTTTTTC
Statistics
Matches: 82, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
17 11 0.13
18 21 0.26
19 20 0.24
20 12 0.15
21 4 0.05
22 14 0.17
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (19 bp):
ATTTTTATATATTTTAATA
Found at i:9629847 original size:17 final size:18
Alignment explanation
Indices: 9629825--9629862 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
9629815 ATATTTTTAT
*
9629825 ATATTTTAGTAA-TTTTC
1 ATATTTTAATAATTTTTC
9629842 ATATTTTAATAATTTTTC
1 ATATTTTAATAATTTTTC
9629860 ATA
1 ATA
9629863 AATTGAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (18 bp):
ATATTTTAATAATTTTTC
Found at i:9630478 original size:2 final size:2
Alignment explanation
Indices: 9630473--9630503 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9630463 CTAAGAAAAA
9630473 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9630504 AACCTTTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9633461 original size:24 final size:25
Alignment explanation
Indices: 9633415--9633475 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
9633405 TATATGTTAT
* *
9633415 ATATAACAATTATTTAATCAAAAGA
1 ATATAATAATTATTTAATCAAAACA
*
9633440 ATATAATAATTA-TTAATTAAAACA
1 ATATAATAATTATTTAATCAAAACA
9633464 ATATAATAATTA
1 ATATAATAATTA
9633476 ATCCATTACG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 22 0.67
25 11 0.33
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (25 bp):
ATATAATAATTATTTAATCAAAACA
Found at i:9647547 original size:47 final size:44
Alignment explanation
Indices: 9647436--9647549 Score: 115
Period size: 47 Copynumber: 2.5 Consensus size: 44
9647426 TCTTTATACT
* * *
9647436 ATTATATTATTTTACATTTTAACAATATATTATTTCATATTATT
1 ATTATATTATTTTATATTTTAACAATATATCATTTCATATTATA
*
9647480 ATTAT-TTATTATATATTATTTTTAC-ATATATACACTTTCATATTATAA
1 ATTATATTATT-T-TA-TATTTTAACAATATAT-CA-TTTCATATTAT-A
9647528 ATTATAATTATTTTATATTTTA
1 ATTAT-ATTATTTTATATTTTA
9647550 TACCTTTATG
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
43 5 0.09
44 6 0.11
45 8 0.14
46 8 0.14
47 17 0.30
48 7 0.12
49 1 0.02
50 5 0.09
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (44 bp):
ATTATATTATTTTATATTTTAACAATATATCATTTCATATTATA
Found at i:9647839 original size:17 final size:17
Alignment explanation
Indices: 9647819--9647884 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
9647809 TTATATACCA
*
9647819 ATATATTTTATATTTTT
1 ATATATATTATATTTTT
*
9647836 ATATA-ATTATTATTCTT
1 ATATATATTA-TATTTTT
*
9647853 ATAAATA-TAT-TTTTT
1 ATATATATTATATTTTT
9647868 ATTATATATTATATTTT
1 A-TATATATTATATTTT
9647885 AAATCTGTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.13
16 9 0.23
17 20 0.51
18 5 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATATTATATTTTT
Found at i:9654915 original size:14 final size:14
Alignment explanation
Indices: 9654896--9654925 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
9654886 GGAGGAGAAG
9654896 TGGAGTGGGACCGA
1 TGGAGTGGGACCGA
9654910 TGGAGTGGGACCGA
1 TGGAGTGGGACCGA
9654924 TG
1 TG
9654926 ACATTCCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.13, G:0.50, T:0.17
Consensus pattern (14 bp):
TGGAGTGGGACCGA
Found at i:9660188 original size:204 final size:205
Alignment explanation
Indices: 9659630--9660379 Score: 1093
Period size: 205 Copynumber: 3.7 Consensus size: 205
9659620 GGCTAAAAGA
* * *
9659630 AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTGATTTGGT
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
** * *
9659695 TTTCGTGTGCTTACGCTGAAGCAAATCTAAGATAATTTGGCATCTCTGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * * * *
9659760 TCGAATTTTGGCTTCTCTA-TATTGAAACGGAGG-GCAGACACATAGCAGATC-CAGCCTTCAGA
131 TCGAAGTCTGGCATCTCCACT-TTG--ACGG-GGAGCAGATACATAGCAGATCTCA-CCTTCAGA
9659822 TGTTTATACTGAAGC
191 TGTTTATACTGAAGC
* * * * *
9659837 AGATCTAAGATGGTTTGGTATCCTTGTGCTTACAAGGAGTAAATCGAAGACATAGCTGATTTTGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
*
9659902 TTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
66 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
9659967 TCGAAGTCTGGCATCTCCACTTTGACGGGGAGCAGATACATAGTAGATCTCACCTTTAGATGTTT
131 TCGAAGTCTGGCATCTCCACTTTGACGGGGAGCAGATACATAGCAGATCTCACCTTCAGATGTTT
9660032 ATACTGAAGC
196 ATACTGAAGC
* * * *
9660042 AGATCCAAGACGATTTGGCATCCTTGTGCTTATAAGGAGCGAATTGAAGACATAGCTGATTTGGC
1 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
* *
9660107 TTTCACGTGTTTA-GATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACGAA
66 TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* *
9660171 TCGAAGTCTGGCATCTCCACTTTAACGGGGAGCAGATACATAGCAGATCTCACCTTCAGATAATT
131 TCGAAGTCTGGCATCTCCACTTTGACGGGGAGCAGATACATAGCAGATCTCACCTTCAGAT-GTT
*
9660236 T-CACTGAAGC
195 TATACTGAAGC
* * *
9660246 AAGATCCAAGATGATTTGACATTCTTGTGCTTACAAGGAACAAA---AAGACATAGCTGATTTGG
1 -AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGG
9660308 CTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
65 CTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAA
9660373 ATCGAAG
130 ATCGAAG
9660380 AAGCATATTT
Statistics
Matches: 498, Mismatches: 39, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
202 31 0.06
203 56 0.11
204 118 0.24
205 151 0.30
206 2 0.00
207 139 0.28
208 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (205 bp):
AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCTGATTTGGC
TTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
TCGAAGTCTGGCATCTCCACTTTGACGGGGAGCAGATACATAGCAGATCTCACCTTCAGATGTTT
ATACTGAAGC
Found at i:9662524 original size:17 final size:16
Alignment explanation
Indices: 9662511--9662568 Score: 66
Period size: 17 Copynumber: 3.6 Consensus size: 16
9662501 CCAATATATT
9662511 TTATATTTTTATATAA
1 TTATATTTTTATATAA
*
9662527 TTATTATTCTTATA-AA
1 TTA-TATTTTTATATAA
9662543 -TATATTTTTATTATATA
1 TTATATTTTTA-TATA-A
9662560 TTATATTTT
1 TTATATTTT
9662569 AAATCTGTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 7 0.20
15 4 0.11
16 6 0.17
17 10 0.29
18 8 0.23
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATATTTTTATATAA
Found at i:9662569 original size:17 final size:17
Alignment explanation
Indices: 9662504--9662569 Score: 50
Period size: 17 Copynumber: 3.9 Consensus size: 17
9662494 TTATATACCA
*
9662504 ATATATTTTATATTT-TT
1 ATATATTATAT-TTTATT
9662521 ATATAATTATTATTCTTA-T
1 ATAT-ATTA-TATT-TTATT
*
9662540 AAATA-TAT-TTTTATT
1 ATATATTATATTTTATT
9662555 ATATATTATATTTTA
1 ATATATTATATTTTA
9662570 AATCTGTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
14 3 0.08
15 7 0.18
16 4 0.10
17 11 0.28
18 5 0.13
19 9 0.23
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
ATATATTATATTTTATT
Found at i:9662783 original size:2 final size:2
Alignment explanation
Indices: 9662771--9662802 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
9662761 TTTCAAATGC
*
9662771 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9662803 GTCAAAATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:9664789 original size:2 final size:2
Alignment explanation
Indices: 9664782--9664821 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
9664772 CAGATGTCAA
9664782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9664822 CAGACTAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9669413 original size:110 final size:110
Alignment explanation
Indices: 9669292--9669520 Score: 440
Period size: 110 Copynumber: 2.1 Consensus size: 110
9669282 AACTTTTGCA
9669292 ATACTACTAGGTTTCCATAATTGCAACTTATTTGCAATTCCTTTGCAAGGCCTTATTTATTTGAT
1 ATACTACTAGGTTTCCATAATTGCAACTTATTTGCAATTCCTTTGCAAGGCCTTATTTATTTGAT
9669357 GGACTTCTTTCTATTACTACTCTGAACAACTTATATGTTATTCGT
66 GGACTTCTTTCTATTACTACTCTGAACAACTTATATGTTATTCGT
9669402 ATACTACTAGGTTTCCATAATTGCAACTTATTTGCAATTCCTTTGCAAGGCCTTATTTATTTGAT
1 ATACTACTAGGTTTCCATAATTGCAACTTATTTGCAATTCCTTTGCAAGGCCTTATTTATTTGAT
*
9669467 GGACTTCTTTCTATTACTACTTTGAACAACTTATATGTTATTCGT
66 GGACTTCTTTCTATTACTACTCTGAACAACTTATATGTTATTCGT
9669512 ACTACTACT
1 A-TACTACT
9669521 TTGAACAACT
Statistics
Matches: 117, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
110 110 0.94
111 7 0.06
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44
Consensus pattern (110 bp):
ATACTACTAGGTTTCCATAATTGCAACTTATTTGCAATTCCTTTGCAAGGCCTTATTTATTTGAT
GGACTTCTTTCTATTACTACTCTGAACAACTTATATGTTATTCGT
Found at i:9669520 original size:33 final size:33
Alignment explanation
Indices: 9669481--9669548 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
9669471 TTCTTTCTAT
9669481 TACTACTTTGAACAACTTATATGTTATTCGTAC
1 TACTACTTTGAACAACTTATATGTTATTCGTAC
9669514 TACTACTTTGAACAACTTATATGTTATTCGTAC
1 TACTACTTTGAACAACTTATATGTTATTCGTAC
9669547 TA
1 TA
9669549 ACACAGGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.43
Consensus pattern (33 bp):
TACTACTTTGAACAACTTATATGTTATTCGTAC
Found at i:9670554 original size:142 final size:142
Alignment explanation
Indices: 9670298--9670584 Score: 574
Period size: 142 Copynumber: 2.0 Consensus size: 142
9670288 ATGGCCAACC
9670298 ATGATGCTTATTGGGTACAAGTCTTAAGGTCTAAATATAATATATGTATATATATAAAAATTTCC
1 ATGATGCTTATTGGGTACAAGTCTTAAGGTCTAAATATAATATATGTATATATATAAAAATTTCC
9670363 CTAGCAACTTGATGAGATGTAATTGCTCCTATGTATAGTGTTCCTTCTCGAAGGTTTGGGCGAAC
66 CTAGCAACTTGATGAGATGTAATTGCTCCTATGTATAGTGTTCCTTCTCGAAGGTTTGGGCGAAC
9670428 ATTAGAGAGAAT
131 ATTAGAGAGAAT
9670440 ATGATGCTTATTGGGTACAAGTCTTAAGGTCTAAATATAATATATGTATATATATAAAAATTTCC
1 ATGATGCTTATTGGGTACAAGTCTTAAGGTCTAAATATAATATATGTATATATATAAAAATTTCC
9670505 CTAGCAACTTGATGAGATGTAATTGCTCCTATGTATAGTGTTCCTTCTCGAAGGTTTGGGCGAAC
66 CTAGCAACTTGATGAGATGTAATTGCTCCTATGTATAGTGTTCCTTCTCGAAGGTTTGGGCGAAC
9670570 ATTAGAGAGAAT
131 ATTAGAGAGAAT
9670582 ATG
1 ATG
9670585 TGTTGGGAGT
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 145 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.35
Consensus pattern (142 bp):
ATGATGCTTATTGGGTACAAGTCTTAAGGTCTAAATATAATATATGTATATATATAAAAATTTCC
CTAGCAACTTGATGAGATGTAATTGCTCCTATGTATAGTGTTCCTTCTCGAAGGTTTGGGCGAAC
ATTAGAGAGAAT
Found at i:9671945 original size:19 final size:18
Alignment explanation
Indices: 9671921--9671962 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
9671911 TTTATCTTTC
9671921 ATTTTAAATATATTTAATA
1 ATTTTAAATATATTTAA-A
9671940 ATTTT--ATATATTTAAA
1 ATTTTAAATATATTTAAA
9671956 ATTTTAA
1 ATTTTAA
9671963 TAGTTAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 6 0.29
17 10 0.48
19 5 0.24
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAAATATATTTAAA
Found at i:9671950 original size:17 final size:17
Alignment explanation
Indices: 9671928--9671971 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
9671918 TTCATTTTAA
9671928 ATATATTTAATAATTTT
1 ATATATTTAATAATTTT
9671945 ATATATTTAA-AATTTT
1 ATATATTTAATAATTTT
*
9671961 A-ATAGTTAATA
1 ATATATTTAATA
9671972 GAGCAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 8 0.32
17 10 0.40
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
ATATATTTAATAATTTT
Found at i:9674105 original size:19 final size:20
Alignment explanation
Indices: 9674068--9674108 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
9674058 TACAACACAA
*
9674068 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
9674088 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
9674107 TT
1 TT
9674109 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:9674511 original size:10 final size:10
Alignment explanation
Indices: 9674496--9674542 Score: 62
Period size: 10 Copynumber: 4.9 Consensus size: 10
9674486 TGTGGGTTCT
9674496 TCTTTCTTTC
1 TCTTTCTTTC
9674506 TCTTTCTTT-
1 TCTTTCTTTC
*
9674515 T-TTTCTTTT
1 TCTTTCTTTC
9674524 TCTTTCTTTC
1 TCTTTCTTTC
*
9674534 TGTTTCTTT
1 TCTTTCTTT
9674543 TTGCTTTTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
8 7 0.21
9 2 0.06
10 24 0.73
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (10 bp):
TCTTTCTTTC
Found at i:9674514 original size:14 final size:14
Alignment explanation
Indices: 9674495--9674542 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
9674485 CTGTGGGTTC
9674495 TTCTTTCTTTCTCT
1 TTCTTTCTTTCTCT
* *
9674509 TTCTTTTTTTCTTT
1 TTCTTTCTTTCTCT
*
9674523 TTCTTTCTTTCTGT
1 TTCTTTCTTTCTCT
9674537 TTCTTT
1 TTCTTT
9674543 TTGCTTTTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (14 bp):
TTCTTTCTTTCTCT
Found at i:9674526 original size:28 final size:27
Alignment explanation
Indices: 9674495--9674568 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 27
9674485 CTGTGGGTTC
*
9674495 TTCTTTCTTTCTCTTTCTTTTTTTCTTT
1 TTCTTTCTTTCT-TTTCTTTTTTGCTTT
9674523 TTCTTTCTTTCTGTTTC-TTTTTGCTTT
1 TTCTTTCTTTCT-TTTCTTTTTTGCTTT
9674550 TGTCTTT-TTT-TTTTCTTTT
1 T-TCTTTCTTTCTTTTCTTTT
9674569 ATTACTATAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
25 4 0.10
26 4 0.10
27 13 0.31
28 21 0.50
ACGTcount: A:0.00, C:0.18, G:0.04, T:0.78
Consensus pattern (27 bp):
TTCTTTCTTTCTTTTCTTTTTTGCTTT
Found at i:9680144 original size:38 final size:37
Alignment explanation
Indices: 9680078--9680210 Score: 106
Period size: 38 Copynumber: 3.5 Consensus size: 37
9680068 ACCAATTTGG
* * *
9680078 CACCCAGTGCCTCATCGGATAGTTCGAAGCAAAGTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGTAAAGTTGA
* *
9680116 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAAAG-TGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGTAAAGTTGA
* * * * *
9680153 TACCCAGTACCTCATCGAATCTATCCGAAGTAAAATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGTAAAGT--TGA
*
9680194 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
9680211 ACTCGAGATC
Statistics
Matches: 74, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
37 16 0.22
38 39 0.53
39 3 0.04
41 16 0.22
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGTAAAGTTGA
Found at i:9681305 original size:8 final size:8
Alignment explanation
Indices: 9681292--9681322 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
9681282 ATGCTCTCTG
9681292 TTTCTTTA
1 TTTCTTTA
9681300 TTTCTTTA
1 TTTCTTTA
9681308 TTTCTTTA
1 TTTCTTTA
9681316 TTTCTTT
1 TTTCTTT
9681323 TATGCTTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTCTTTA
Found at i:9681330 original size:16 final size:16
Alignment explanation
Indices: 9681295--9681333 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
9681285 CTCTCTGTTT
*
9681295 CTTTATTTCTTTATTT
1 CTTTATTTCTTTATTG
9681311 CTTTATTTCTTT-TATG
1 CTTTATTTCTTTAT-TG
9681327 CTTTATT
1 CTTTATT
9681334 ATTTTGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 1 0.05
16 20 0.95
ACGTcount: A:0.13, C:0.13, G:0.03, T:0.72
Consensus pattern (16 bp):
CTTTATTTCTTTATTG
Found at i:9689338 original size:19 final size:20
Alignment explanation
Indices: 9689301--9689341 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
9689291 TACAACACAA
*
9689301 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
9689321 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
9689340 TT
1 TT
9689342 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:9694196 original size:13 final size:13
Alignment explanation
Indices: 9694178--9694214 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
9694168 AGATAATTAG
9694178 CAAATCATACATA
1 CAAATCATACATA
9694191 CAAATCATACATA
1 CAAATCATACATA
*
9694204 TAAATTCATAC
1 CAAA-TCATAC
9694215 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:9695601 original size:17 final size:17
Alignment explanation
Indices: 9695579--9695611 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9695569 ATTTCTCCTT
9695579 TTTCTTTTCTTT-TATTC
1 TTTC-TTTCTTTCTATTC
9695596 TTTCTTTCTTTCTATT
1 TTTCTTTCTTTCTATT
9695612 TCGTTTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTCTTTCTTTCTATTC
Found at i:9695672 original size:16 final size:16
Alignment explanation
Indices: 9695651--9695681 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9695641 TTTCTTTTGT
*
9695651 TTCTTTATTTTATTTA
1 TTCTTTATTTCATTTA
9695667 TTCTTTATTTCATTT
1 TTCTTTATTTCATTT
9695682 TATTTACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTATTTCATTTA
Found at i:9695828 original size:3 final size:3
Alignment explanation
Indices: 9695807--9695871 Score: 107
Period size: 3 Copynumber: 22.0 Consensus size: 3
9695797 TTATCTCAAT
9695807 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9695851 TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
9695872 GTAAATATCT
Statistics
Matches: 59, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.07
3 52 0.88
4 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9695912 original size:26 final size:25
Alignment explanation
Indices: 9695863--9695912 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
9695853 ATAATAATAA
* *
9695863 TAATAATAAGTAAATATCTTTAACT
1 TAATAATAAGTAAATATATATAACT
9695888 TAATAAATAAGTAAATATATATAAC
1 TAAT-AATAAGTAAATATATATAAC
9695913 ATACATTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 4 0.18
26 18 0.82
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.36
Consensus pattern (25 bp):
TAATAATAAGTAAATATATATAACT
Found at i:9701796 original size:13 final size:13
Alignment explanation
Indices: 9701778--9701814 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
9701768 AGATAATTAG
9701778 CAAATCATACATA
1 CAAATCATACATA
9701791 CAAATCATACATA
1 CAAATCATACATA
*
9701804 TAAATTCATAC
1 CAAA-TCATAC
9701815 CAAACTATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.51, C:0.22, G:0.00, T:0.27
Consensus pattern (13 bp):
CAAATCATACATA
Found at i:9703283 original size:16 final size:16
Alignment explanation
Indices: 9703262--9703292 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9703252 TTTCTTTTGT
*
9703262 TTCTTTATTTTATTTA
1 TTCTTTATTTCATTTA
9703278 TTCTTTATTTCATTT
1 TTCTTTATTTCATTT
9703293 TATTTACTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCTTTATTTCATTTA
Found at i:9703439 original size:3 final size:3
Alignment explanation
Indices: 9703418--9703485 Score: 113
Period size: 3 Copynumber: 23.0 Consensus size: 3
9703408 TTATCTCAAT
9703418 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9703462 TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
9703486 GTAAATATCT
Statistics
Matches: 62, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
2 4 0.06
3 55 0.89
4 3 0.05
ACGTcount: A:0.66, C:0.00, G:0.01, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9704397 original size:48 final size:47
Alignment explanation
Indices: 9704322--9704597 Score: 230
Period size: 48 Copynumber: 5.7 Consensus size: 47
9704312 GGTTATGTGG
* **
9704322 GCTAGTGTAAGACCATGTTTCCAACATGGCATCGACATTTATATGAGA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGAC-TTTATATGAGA
* * * * * *
9704370 GCTAGTGTAAGAACATGTCTGGGACATGGCATC-AGCTTCGACATGTGG
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGA-CTT-TATATGAGA
* * * **
9704418 GCTAGTGTAAGATCATGTTTGGAACATAGCATCAGCACCGATATATGAGA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATC-G-A-CTTTATATGAGA
* * * ** * *
9704468 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGTCATGTGG
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGACTTTAT-ATGAGA
* * *
9704516 GCTAGTGTAAGGCCATGTTTGGAACATGGCATCGACACTGATATATGAGA
1 GCTAGTGTAAGACCATGTCTGGAACATGGCATCG--ACT-TTATATGAGA
*
9704566 GCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 GCTAGTGTAAGACCATGTCTGGAACATGGCAT
9704598 TGGTATTTTA
Statistics
Matches: 174, Mismatches: 45, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
47 5 0.03
48 97 0.56
49 1 0.01
50 68 0.39
51 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACCATGTCTGGAACATGGCATCGACTTTATATGAGA
Found at i:9704495 original size:98 final size:97
Alignment explanation
Indices: 9704316--9704597 Score: 422
Period size: 98 Copynumber: 2.9 Consensus size: 97
9704306 TACTAGGGTT
** **
9704316 ATGTGGGCTAGTGTAAGACCATGTTTCCAACATGGCATCG-ACATTTATATGAGAGCTAGTGTAA
1 ATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCACAGATATATGAGAGCTAGTGTAA
*
9704380 GAACATGTCTGGGACATGGCATCAGCTTCGAC
66 GACCATGTCTGGGACATGGCATCAGCTTCGAC
* * * *
9704412 ATGTGGGCTAGTGTAAGATCATGTTTGGAACATAGCATCAGCACCGATATATGAGAGCCAGTGTA
1 ATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGCATC-GCACAGATATATGAGAGCTAGTGTA
* *
9704477 AGACCATGTCTGGGACATGGCATCGGCTTCGTC
65 AGACCATGTCTGGGACATGGCATCAGCTTCGAC
* *
9704510 ATGTGGGCTAGTGTAAGGCCATGTTTGGAACATGGCATCGACACTGATATATGAGAGCTAGTGTA
1 ATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGCATCG-CACAGATATATGAGAGCTAGTGTA
9704575 AGACCATGTCTGGGACATGGCAT
65 AGACCATGTCTGGGACATGGCAT
9704598 TGGTATTTTA
Statistics
Matches: 167, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
96 35 0.21
97 2 0.01
98 130 0.78
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (97 bp):
ATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGCATCGCACAGATATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCAGCTTCGAC
Found at i:9706747 original size:32 final size:32
Alignment explanation
Indices: 9706701--9706764 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
9706691 TAATTACCCA
*
9706701 ATAAGAGCACAAGAGGTAAATATATCTTCTAT
1 ATAAAAGCACAAGAGGTAAATATATCTTCTAT
9706733 ATAAAAGCACAAGAGGTAAATATATCTTCTAT
1 ATAAAAGCACAAGAGGTAAATATATCTTCTAT
9706765 GGAAAGTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (32 bp):
ATAAAAGCACAAGAGGTAAATATATCTTCTAT
Found at i:9718229 original size:38 final size:40
Alignment explanation
Indices: 9718177--9718473 Score: 286
Period size: 46 Copynumber: 7.0 Consensus size: 40
9718167 CTGATATGAA
9718177 ATGTGTAA-ACCATGGTTGAAAGATACCATGGCAACC-TG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
9718215 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG
9718258 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-TG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
*
9718299 -TGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----ATG
9718342 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC----AT--G
9718390 ATGTGTAAGACC-TGGTTGAAAGATACCATGGC-ACGTGACATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC----CATG
* **
9718432 AAAAGAATAAGACCATGGTTGAAAGATACCATGGCAA-CATG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
9718473 A
1 A
9718474 CAGAAAATGA
Statistics
Matches: 227, Mismatches: 5, Indels: 53
0.80 0.02 0.19
Matches are distributed among these distances:
37 7 0.03
38 63 0.28
39 1 0.00
41 6 0.03
42 1 0.00
43 4 0.02
44 13 0.06
45 40 0.18
46 90 0.40
48 2 0.01
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (40 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCATG
Found at i:9718282 original size:46 final size:46
Alignment explanation
Indices: 9718215--9718513 Score: 395
Period size: 46 Copynumber: 6.7 Consensus size: 46
9718205 TGGCAACCTG
9718215 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
9718261 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG---
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
9718299 TGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
*
9718345 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* *
9718391 TGTGTAAGACC-TGGTTGAAAGATACCATGGC-ACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
* ** * *
9718435 AGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAA
* * * *
9718481 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
9718514 TCACGTCAAA
Statistics
Matches: 227, Mismatches: 15, Indels: 22
0.86 0.06 0.08
Matches are distributed among these distances:
38 35 0.15
41 2 0.01
43 2 0.01
44 18 0.08
45 41 0.18
46 129 0.57
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAA
Found at i:9718286 original size:84 final size:84
Alignment explanation
Indices: 9718167--9718469 Score: 459
Period size: 84 Copynumber: 3.5 Consensus size: 84
9718157 AGTGTGCTCT
9718167 CTGATATGAAATGTGTAA-ACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
9718231 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
*
9718250 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACTATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
9718315 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
9718334 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
9718399 ACC-TGGTTGAAAGATACCATGGC-AC
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * **
9718424 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
9718470 ATGACAGAAA
Statistics
Matches: 204, Mismatches: 7, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
83 18 0.09
84 111 0.54
89 1 0.00
90 43 0.21
91 21 0.10
92 10 0.05
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:9718466 original size:90 final size:90
Alignment explanation
Indices: 9718299--9718513 Score: 270
Period size: 90 Copynumber: 2.4 Consensus size: 90
9718289 TGGCAACCTG
* * * **
9718299 TGTGTAAGACTATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGA
1 TGTGTAAGAC-CTGGTTGAAAGATACCATGGC-ACCTGACATGAAAAGAATAAGACCATGGTTGA
* * *
9718364 AAGATACCATGGCAACCTGATATG-AGA
64 AAGATACCATGGCAACATGACA-GAAAA
*
9718391 TGTGTAAGACCTGGTTGAAAGATACCATGGCACGTGACATGAAAAGAATAAGACCATGGTTGAAA
1 TGTGTAAGACCTGGTTGAAAGATACCATGGCACCTGACATGAAAAGAATAAGACCATGGTTGAAA
9718456 GATACCATGGCAACATGACAGAAAA
66 GATACCATGGCAACATGACAGAAAA
* * * *
9718481 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACC-TGGTTGAAAGATACCATGGCA
9718514 TCACGTCAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
89 1 0.01
90 59 0.55
91 38 0.35
92 10 0.09
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.22
Consensus pattern (90 bp):
TGTGTAAGACCTGGTTGAAAGATACCATGGCACCTGACATGAAAAGAATAAGACCATGGTTGAAA
GATACCATGGCAACATGACAGAAAA
Found at i:9718819 original size:23 final size:25
Alignment explanation
Indices: 9718774--9718820 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
9718764 AATAAATATA
*
9718774 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
9718799 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
9718821 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:9719745 original size:12 final size:12
Alignment explanation
Indices: 9719728--9719765 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
9719718 CGACCCGCCC
9719728 ATATTAATTTTT
1 ATATTAATTTTT
9719740 ATATT-ATTTTT
1 ATATTAATTTTT
*
9719751 ATA-TAATTTTA
1 ATATTAATTTTT
9719762 ATAT
1 ATAT
9719766 ATATATAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 1 0.04
11 17 0.74
12 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:9719918 original size:30 final size:30
Alignment explanation
Indices: 9719882--9719942 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
9719872 CAATTTAACA
**
9719882 AGCAAATGCCTCTAAAATAATAGCAAAATT
1 AGCAAATGCCTCTAAAATAATAAAAAAATT
* *
9719912 AGCAAATGTCTTTAAAATAATAAAAAAATT
1 AGCAAATGCCTCTAAAATAATAAAAAAATT
9719942 A
1 A
9719943 ACAATAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.54, C:0.11, G:0.08, T:0.26
Consensus pattern (30 bp):
AGCAAATGCCTCTAAAATAATAAAAAAATT
Found at i:9737018 original size:6 final size:6
Alignment explanation
Indices: 9737007--9737034 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
9736997 AGGTTTATAT
9737007 GGGGGA GGGGGA GGGGGA GGGGGA GGGG
1 GGGGGA GGGGGA GGGGGA GGGGGA GGGG
9737035 CAAAGGGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.86, T:0.00
Consensus pattern (6 bp):
GGGGGA
Found at i:9737416 original size:33 final size:33
Alignment explanation
Indices: 9737374--9737469 Score: 138
Period size: 33 Copynumber: 2.9 Consensus size: 33
9737364 GCAAATAGTA
* *
9737374 AAGTAAACTAATAGGCATTCTTTGGGGGAAGTG
1 AAGTAAACTAATAGGAATGCTTTGGGGGAAGTG
*
9737407 AAGTAAACTAATAAGAATGCTTTGGGGGAAGTG
1 AAGTAAACTAATAGGAATGCTTTGGGGGAAGTG
* * *
9737440 AAGTAAACTAACAGGTATGGTTTGGGGGAA
1 AAGTAAACTAATAGGAATGCTTTGGGGGAA
9737470 CTAGATTTGA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.36, C:0.07, G:0.31, T:0.25
Consensus pattern (33 bp):
AAGTAAACTAATAGGAATGCTTTGGGGGAAGTG
Found at i:9738695 original size:41 final size:42
Alignment explanation
Indices: 9738628--9738709 Score: 96
Period size: 41 Copynumber: 2.0 Consensus size: 42
9738618 TTGTTTGTGG
** *
9738628 GTTTGGAGCTTTTGGACTTTATTTAGACAAAATTGTCTTTGA
1 GTTTGGAGCTTTTCAACTTTATTTAGACAAAATTATCTTTGA
* *
9738670 GTTTGGA-CTTTTCAACTTT-TATTAGATAATATTATCTTTG
1 GTTTGGAGCTTTTCAACTTTAT-TTAGACAAAATTATCTTTG
9738710 TTTTATGTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
40 1 0.03
41 26 0.76
42 7 0.21
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (42 bp):
GTTTGGAGCTTTTCAACTTTATTTAGACAAAATTATCTTTGA
Found at i:9742701 original size:157 final size:156
Alignment explanation
Indices: 9742432--9742898 Score: 613
Period size: 157 Copynumber: 2.9 Consensus size: 156
9742422 AGTTTTTTTT
* * **
9742432 AAATCACTACTTTTTTTAAAGATCAAAAC-TTTATTTCGAAATAATTGAAAAAAAATCAAATTTT
1 AAATCACTACTTTTCTTAAAGATCAAAACTTTTATTTCGAAATAGTTG-AAAAAAATCAAAAATT
* * *
9742496 TTTTTTAAAAATTTTAAACTTTCTTTTAAAATGACTAAAAAAACATATTTTGT-TTTTTAAAATC
65 TGTTTTAAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAATATATTTT-TATTTTTAAAATC
9742560 TAAACTTTCTCCTTTTTTTTCTTTTAAAAAA
129 TAAACTTTCTCCTTTTTTTTC-TTT--AAAA
* *
9742591 AAATCACTAC-TTTCTTAAAGATCAAACCTTTTATTTCGAAATAGTTGAAAAAAATCAAAAAATT
1 AAATCACTACTTTTCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAAAAATCAAAAATTT
* *
9742655 GTTTT-AAAATTTTAAACTTTCCTTTAAAATAAATAAAAAAATATATTTTTATTTTTAAAATCTA
66 GTTTTAAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAATATATTTTTATTTTTAAAATCTA
*
9742719 AACTTTTTCTCTCTTTTTTTCTTTAAAA
131 AACTTTCTC-CT-TTTTTTTCTTTAAAA
* * *
9742747 AAATCACTACTTTTCTTAAAGATTAAAGCTTTTATATT-GAAATAGTTGAAGAAAAATCAAAACT
1 AAATCACTACTTTTCTTAAAGATCAAAACTTTTAT-TTCGAAATAGTTGAA-AAAAATCAAAAAT
*
9742811 TTGTTTTAAAATTTTAAATTTTAAATTTTCCTTTAAAATGACTAAAAAAATATATTTTTATTTTT
64 TTGTTTT--AA----AAATTTTAAACTTTCCTTTAAAATGACTAAAAAAATATATTTTTATTTTT
9742876 AAAATCTAAACTTTCT-CTTTTTT
123 AAAATCTAAACTTTCTCCTTTTTT
9742899 AAAAAAATAA
Statistics
Matches: 274, Mismatches: 20, Indels: 25
0.86 0.06 0.08
Matches are distributed among these distances:
156 15 0.05
157 95 0.35
158 59 0.22
159 35 0.13
161 1 0.00
162 5 0.02
163 2 0.01
165 62 0.23
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (156 bp):
AAATCACTACTTTTCTTAAAGATCAAAACTTTTATTTCGAAATAGTTGAAAAAAATCAAAAATTT
GTTTTAAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAATATATTTTTATTTTTAAAATCTA
AACTTTCTCCTTTTTTTTCTTTAAAA
Found at i:9748031 original size:40 final size:39
Alignment explanation
Indices: 9747974--9748158 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 39
9747964 ATTAAATGAT
* * *
9747974 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * *
9748014 ATCCGGGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
9748054 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
9748094 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
9748134 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
9748159 CGTGCATGTG
Statistics
Matches: 126, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:9748110 original size:80 final size:80
Alignment explanation
Indices: 9747973--9748179 Score: 247
Period size: 80 Copynumber: 2.6 Consensus size: 80
9747963 AATTAAATGA
* * ** * *
9747973 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGGGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
9748038 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
9748051 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
9748116 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
9748133 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
9748180 TTGTATTCCG
Statistics
Matches: 110, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
80 106 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:9748164 original size:40 final size:39
Alignment explanation
Indices: 9747972--9748179 Score: 211
Period size: 40 Copynumber: 5.2 Consensus size: 39
9747962 CAATTAAATG
* * ** *
9747972 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* * * * *
9748012 AAATCCGGGTTAAGACCCGAAGGCAATT-ATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTG-TT
*
9748052 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAG-TGTT
* * *
9748092 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
* *
9748132 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGT-GTT
9748172 ATATCCGG
1 ATATCCGG
9748180 TTGTATTCCG
Statistics
Matches: 145, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
39 5 0.03
40 135 0.93
41 5 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTGTT
Found at i:9756083 original size:40 final size:39
Alignment explanation
Indices: 9756026--9756210 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 39
9756016 ATTAAATGAT
* * *
9756026 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
* * * * *
9756066 ATCCGAGTTAAGACCCGAAGGCAATTATGCTAGTGACTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTG-TTAA
**
9756106 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAG-TGTTAA
* * **
9756146 ATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTCT
1 ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGT-GTTAA
9756186 ATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATT
9756211 CGTGCATGTG
Statistics
Matches: 124, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 2 0.02
40 120 0.97
41 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.24
Consensus pattern (39 bp):
ATCCGGGCTAAGACCCGAAGGCATTTATGCAAGTGTTAA
Found at i:9756162 original size:80 final size:80
Alignment explanation
Indices: 9756025--9756231 Score: 238
Period size: 80 Copynumber: 2.6 Consensus size: 80
9756015 AATTAAATGA
* * ** * * *
9756025 TATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTTAAATCCGAGTTAAGACCCGAAGGCAA
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
*
9756090 TTATGCTAGT-G-AC
66 TTATGCAAGTCGTAC
* *
9756103 TAAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGC
1 T--ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGC
* * *
9756168 ATTTGTGCAAGTCGTTC
64 AATTATGCAAGTCGTAC
* * *
9756185 TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGG
9756232 TTGTATTCCG
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
78 1 0.01
80 105 0.96
81 1 0.01
82 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTAAATCCGGGCTAAGACCCGAAGGCAA
TTATGCAAGTCGTAC
Found at i:9756216 original size:40 final size:40
Alignment explanation
Indices: 9756024--9756231 Score: 204
Period size: 40 Copynumber: 5.2 Consensus size: 40
9756014 CAATTAAATG
* * ** * *
9756024 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * * * *
9756064 AAATCCGAGTTAAGACCCGAAGGCAATT-ATGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
* *
9756104 AAATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
9756144 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
9756184 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
9756224 ATATCCGG
1 ATATCCGG
9756232 TTGTATTCCG
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 4 0.03
40 135 0.94
41 4 0.03
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:9759199 original size:14 final size:14
Alignment explanation
Indices: 9759171--9759206 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
9759161 TAAAATAATT
9759171 ATTTAA-TATTATA
1 ATTTAATTATTATA
*
9759184 ATTTAATTATTTTA
1 ATTTAATTATTATA
9759198 ATTTAATTA
1 ATTTAATTA
9759207 GTGATAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
ATTTAATTATTATA
Found at i:9761309 original size:3 final size:3
Alignment explanation
Indices: 9761301--9761342 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
9761291 AGATATTTAC
9761301 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9761343 ATTGAGATAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:9763468 original size:20 final size:20
Alignment explanation
Indices: 9763439--9763492 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
9763429 AGGTTAGTCC
*
9763439 CACGGCCATGTGCCAAGCCA
1 CACGGGCATGTGCCAAGCCA
* *
9763459 CACGGGCATGTCCCAGGCCA
1 CACGGGCATGTGCCAAGCCA
* *
9763479 CAAGGGCGTGTGCC
1 CACGGGCATGTGCC
9763493 CCTATCTTCA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.20, C:0.37, G:0.31, T:0.11
Consensus pattern (20 bp):
CACGGGCATGTGCCAAGCCA
Found at i:9768052 original size:35 final size:35
Alignment explanation
Indices: 9767970--9768053 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
9767960 TGACTGGTTA
*
9767970 TTCAAGGTGACACCATGTAAACGATTTATAGGTCC
1 TTCAAGGTGACACCATGTAAACGATTTATAGGCCC
** ** * *
9768005 TTCGGGGTGACACTGTGTGAACGGTTTATAGGCCC
1 TTCAAGGTGACACCATGTAAACGATTTATAGGCCC
*
9768040 TTCAAGGAGACACC
1 TTCAAGGTGACACC
9768054 TCGTAAAGAG
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (35 bp):
TTCAAGGTGACACCATGTAAACGATTTATAGGCCC
Found at i:9773421 original size:14 final size:16
Alignment explanation
Indices: 9773395--9773428 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
9773385 AAATAAAAAT
9773395 ATAAAATATGACAA-A
1 ATAAAATATGACAATA
9773410 ATAAAA-ATGACAATA
1 ATAAAATATGACAATA
9773425 ATAA
1 ATAA
9773429 TGATAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.68, C:0.06, G:0.06, T:0.21
Consensus pattern (16 bp):
ATAAAATATGACAATA
Found at i:9773429 original size:3 final size:3
Alignment explanation
Indices: 9773421--9773743 Score: 170
Period size: 3 Copynumber: 107.7 Consensus size: 3
9773411 TAAAAATGAC
* * * * * * *
9773421 AAT AAT AAT GAT AAT AAT AAT AAT AGT AGT AGT AGT AGT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * **
9773469 AAT AAT AAT GAT GGT AAT AAT AAT AGT AAT AAT AAT -AT GCT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
* * * * * * * * *
9773514 AAT AAT AGT AAA AAA AAT AGT AAT AGT AAT TAC AAA AAT GAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * ** * *
9773562 AAT AA- AAT AA- AAT GAT AAT AGT ACT AAT GTT AAT AGT AAT AAA AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
9773608 AAA AAT AGT AAT AAT AGT AAT AAT AAT AAT ATT GAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
* * * * *
9773654 AAT AGT AA- AAGG AAT AAT AAT AAT AAT AGT AAT AAT AAA AAT ATT
1 AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* ** * *
9773699 AAT AAT AGT AATT AATT AAT TTT AAT AAT AA- AAT AGT AAA AAT AA
1 AAT AAT AAT AA-T AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9773744 CTTAAAAAAG
Statistics
Matches: 239, Mismatches: 72, Indels: 18
0.73 0.22 0.05
Matches are distributed among these distances:
2 10 0.04
3 216 0.90
4 13 0.05
ACGTcount: A:0.59, C:0.01, G:0.09, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9773634 original size:76 final size:76
Alignment explanation
Indices: 9773516--9773660 Score: 175
Period size: 76 Copynumber: 1.9 Consensus size: 76
9773506 TGCTAAATAA
** * * *
9773516 TAATAGTAAAAAAAATAGTAATAGTAATTACAAAAATGATAATAATAAT-AAAATAAAATGATAA
1 TAATAGTAAAAAAAATAAAAATAGTAATAACAAAAATAATAATAATAATGAAAAT-AAATAATAA
9773580 TAGTACTAATGT
65 TAGTACTAATGT
* * ** * *
9773592 TAATAGTAATAAAAATAAAAATAGTAATAATAGTAATAATAATAATATTGATAATAAATAATAAT
1 TAATAGTAAAAAAAATAAAAATAGTAATAACAAAAATAATAATAATAATGAAAATAAATAATAAT
9773657 AGTA
66 AGTA
9773661 AAAGGAATAA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
76 53 0.93
77 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.08, T:0.30
Consensus pattern (76 bp):
TAATAGTAAAAAAAATAAAAATAGTAATAACAAAAATAATAATAATAATGAAAATAAATAATAAT
AGTACTAATGT
Found at i:9775262 original size:44 final size:44
Alignment explanation
Indices: 9775098--9775575 Score: 214
Period size: 44 Copynumber: 10.8 Consensus size: 44
9775088 TGGTTTCAGG
* * *
9775098 TTTAATCTGAC-CTATTGCAACTTCA--GAGGTATAGTACTTGTCGC
1 TTTAATCTG-CTCTACTGCAACTTCAGGGAGATA-AG-ACTTGTGGC
* * *
9775142 CTTAATCTGCTCTACTGCAACTTCAGGGAGATAGGA-TTAGTTGTC
1 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTT-G-TGGC
* * * *
9775187 TTCAGTCTACTCTGCTGCAACTTC-GGAGAGATAAGACTTGTGGC
1 TTTAATCTGCTCTACTGCAACTTCAGG-GAGATAAGACTTGTGGC
* * *
9775231 TTTAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCCATGGTAGA
1 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTG---T-G--GC
* * ** * * * ** * *
9775281 TTTGATCCGAC-CTACTGTGACTTTAGAGG-TATAGGACTCATTGT
1 TTTAATCTG-CTCTACTGCAACTTCAG-GGAGATAAGACTTGTGGC
* * **
9775325 TTTAATCTGCTCCACTGCAAATTCAGGGAGATAAGACTTGT-AA
1 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTGGC
* * * * *
9775368 TTTCAACCTGCTCCACTGCAACTTCAGCGAGATAAG-GTT-T-GT
1 TTT-AATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTGGC
* * *
9775410 TTTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTAT-TGTC
1 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGA-CT-TGTGGC
* * * * * * * *
9775455 TTCACTATGCTCCATTGCAATTTCAGGGAGATAAGACTAGTGAC
1 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTGGC
* * * *
9775499 TTCAACCTGCTCCACTGCAACTTC-GAGGAGATAAGGCTTGT---
1 TTTAATCTGCTCTACTGCAACTTCAG-GGAGATAAGACTTGTGGC
* * * *
9775540 TTTGATTTGCTCTACTGTAACTTCAAGGAGATAAGA
1 TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGA
9775576 TCTGTTTATT
Statistics
Matches: 326, Mismatches: 82, Indels: 55
0.70 0.18 0.12
Matches are distributed among these distances:
41 55 0.17
42 4 0.01
43 13 0.04
44 153 0.47
45 61 0.19
46 7 0.02
47 2 0.01
48 1 0.00
50 27 0.08
51 3 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (44 bp):
TTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGACTTGTGGC
Found at i:9775503 original size:130 final size:130
Alignment explanation
Indices: 9775332--9775578 Score: 390
Period size: 130 Copynumber: 1.9 Consensus size: 130
9775322 TGTTTTAATC
* *
9775332 TGCTCCACTGCAAATTCAGGGAGATAAGACTTGTAATTTCAACCTGCTCCACTGCAACTTC-AGC
1 TGCTCCACTGCAAATTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCGAG-
*
9775396 GAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTC-AGAGAGATAAGATCTATTGTCTTCAC
65 GAGATAAGGCTTGTTTTGATCTGCTCTACTGCAACTTCAAG-GAGATAAGATCTATTGTCTTCAC
9775460 TA
129 TA
* * *
9775462 TGCTCCATTGCAATTTCAGGGAGATAAGACTAGTGACTTCAACCTGCTCCACTGCAACTTCGAGG
1 TGCTCCACTGCAAATTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCGAGG
* *
9775527 AGATAAGGCTTGTTTTGATTTGCTCTACTGTAACTTCAAGGAGATAAGATCT
66 AGATAAGGCTTGTTTTGATCTGCTCTACTGCAACTTCAAGGAGATAAGATCT
9775579 GTTTATTTAT
Statistics
Matches: 107, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
130 103 0.96
131 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (130 bp):
TGCTCCACTGCAAATTCAGGGAGATAAGACTAGTAACTTCAACCTGCTCCACTGCAACTTCGAGG
AGATAAGGCTTGTTTTGATCTGCTCTACTGCAACTTCAAGGAGATAAGATCTATTGTCTTCACTA
Found at i:9787313 original size:14 final size:16
Alignment explanation
Indices: 9787272--9787322 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 16
9787262 TAAATAAGTA
*
9787272 AATAA-AAAATAT-AA
1 AATAATAAAATATGAC
9787286 AAT-ATAAAATATGAC
1 AATAATAAAATATGAC
9787301 AA-AATAAAA-ATGAC
1 AATAATAAAATATGAC
9787315 AATAATAA
1 AATAATAA
9787323 TGATAATAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
13 1 0.03
14 17 0.53
15 14 0.44
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (16 bp):
AATAATAAAATATGAC
Found at i:9787323 original size:3 final size:3
Alignment explanation
Indices: 9787315--9787621 Score: 126
Period size: 3 Copynumber: 102.7 Consensus size: 3
9787305 TAAAAATGAC
* * * * * * * * *
9787315 AAT AAT AAT GAT AAT AAT AAT AAT AGT AGT AGT AGT AGT AGT AGT AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** * **
9787363 AAT AAA AAT AAT AAT GAT GGT AAT AAT AAT AGT AAT AAT AAT -AT GCT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
9787410 AAAT AAT AGT AGT AA- AA- AAT AAT AGT AAT AAT AAT TAC AAA AAT
1 -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * ** * * *
9787454 GAT AAT AAT ACT AAT GTT AAT AGT AAT AAA AAT AA- AACT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT
* * * *
9787499 AAT AGT AAT AAT AAT AAT AAT ATT GAT AAT AAAT AAT AAT AGT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
* * * * *
9787544 AAGG ACT AAT AAT AAT AGT AAT AAT AA- AAGT ATT AAT AAT AGT AATT
1 AA-T AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AA-T
** *
9787591 AATT AAT GTT AAT AAT AA- AAT AGT AA- AAT AA
1 AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9787622 CTAAAAAGGG
Statistics
Matches: 228, Mismatches: 63, Indels: 26
0.72 0.20 0.08
Matches are distributed among these distances:
2 16 0.07
3 198 0.87
4 14 0.06
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9787388 original size:12 final size:12
Alignment explanation
Indices: 9787315--9787621 Score: 139
Period size: 12 Copynumber: 25.4 Consensus size: 12
9787305 TAAAAATGAC
* *
9787315 AATAATAATGAT
1 AATAATAGTAAT
*
9787327 AATAATAATAAT
1 AATAATAGTAAT
* * *
9787339 AGTAGTAGTAGT
1 AATAATAGTAAT
* * *
9787351 AGTAGTAGTAAA
1 AATAATAGTAAT
* *
9787363 AATAAAAATAAT
1 AATAATAGTAAT
* *
9787375 AATGATGGTAAT
1 AATAATAGTAAT
9787387 AATAATAGTAAT
1 AATAATAGTAAT
9787399 AATAATATGCTAAAT
1 AATAATA-G-T-AAT
* *
9787414 AATAGTAGTAAAA
1 AATAATAGT-AAT
9787427 AATAATAGTAAT
1 AATAATAGTAAT
* *
9787439 AATAATTA-CAAA
1 AATAA-TAGTAAT
* *
9787451 AATGATAATAAT
1 AATAATAGTAAT
*
9787463 ACTAAT-GTTAAT
1 AATAATAG-TAAT
*
9787475 AGTAATA--AA-
1 AATAATAGTAAT
* * *
9787484 AATAAAACTAGT
1 AATAATAGTAAT
9787496 AATAATAGTAAT
1 AATAATAGTAAT
*
9787508 AATAATAATAAT
1 AATAATAGTAAT
* * *
9787520 ATTGATAATAAAT
1 AATAATAGT-AAT
9787533 AATAATAGT-A-
1 AATAATAGTAAT
** *
9787543 AA-AGGACTAAT
1 AATAATAGTAAT
9787554 AATAATAGTAAT
1 AATAATAGTAAT
* *
9787566 AATAAAAGTATT
1 AATAATAGTAAT
9787578 AATAATAGTAATT
1 AATAATAGTAA-T
9787591 AATTAAT-GTTAAT
1 AA-TAATAG-TAAT
9787604 AATAAAATAGTAA-
1 AAT--AATAGTAAT
9787617 AATAA
1 AATAA
9787622 CTAAAAAGGG
Statistics
Matches: 222, Mismatches: 53, Indels: 41
0.70 0.17 0.13
Matches are distributed among these distances:
9 8 0.04
10 5 0.02
11 8 0.04
12 142 0.64
13 34 0.15
14 15 0.07
15 10 0.05
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.31
Consensus pattern (12 bp):
AATAATAGTAAT
Found at i:9787430 original size:13 final size:13
Alignment explanation
Indices: 9787387--9787437 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
9787377 TGATGGTAAT
*
9787387 AATAATAGT-AAT
1 AATAATAGTAAAA
*
9787399 AATAATATGCTAAAT
1 AATAATA-G-TAAAA
*
9787414 AATAGTAGTAAAA
1 AATAATAGTAAAA
9787427 AATAATAGTAA
1 AATAATAGTAA
9787438 TAATAATTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 7 0.21
13 15 0.45
14 2 0.06
15 9 0.27
ACGTcount: A:0.59, C:0.02, G:0.10, T:0.29
Consensus pattern (13 bp):
AATAATAGTAAAA
Found at i:9791606 original size:30 final size:30
Alignment explanation
Indices: 9791570--9791631 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
9791560 TCTTATTTTA
9791570 TTGTTAAATTTT-TTATTATTTTA-AAGACAT
1 TTGTT-AATTTTGTTATTATTTTAGAA-ACAT
9791600 TTGTTAATTTTGTTATTATTTTAGAAACAT
1 TTGTTAATTTTGTTATTATTTTAGAAACAT
9791630 TT
1 TT
9791632 TCTTGTTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 6 0.20
30 22 0.73
31 2 0.07
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAAACAT
Found at i:9791785 original size:12 final size:12
Alignment explanation
Indices: 9791755--9791787 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
9791745 TATATATTTT
9791755 AAAATT-ATATA
1 AAAATTAATATA
9791766 AAAA-TAATATA
1 AAAATTAATATA
9791777 AAAATTAATAT
1 AAAATTAATAT
9791788 GGGCGGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 13 0.65
12 6 0.30
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AAAATTAATATA
Found at i:9794708 original size:40 final size:38
Alignment explanation
Indices: 9794627--9794712 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 38
9794617 TGAAAACTTA
* *
9794627 TTAAAAATATTTTTTTATATTTTTATACTTTTTAATTAT
1 TTAAAAATAATTTTTTATATTTTTATAATTTTTAA-TAT
*
9794666 TTAAAAATAATTTTTTATATGTTTTTTGAATTTTTAGA-AT
1 TTAAAAATAATTTTTTATAT-TTTTAT-AATTTTTA-ATAT
9794706 TTAAAAA
1 TTAAAAA
9794713 ACAGTTAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
39 19 0.46
40 14 0.34
41 7 0.17
42 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (38 bp):
TTAAAAATAATTTTTTATATTTTTATAATTTTTAATAT
Found at i:9794844 original size:33 final size:33
Alignment explanation
Indices: 9794781--9794845 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
9794771 AGTTAAAAAA
* *
9794781 TATTAACGTTTCTATCTAATTTGAGGTAATTTG
1 TATTAACGTTTCTATCTAATTTAAGATAATTTG
9794814 TATTAACGTTTCTATC-AATTTTAAGATAATTT
1 TATTAACGTTTCTATCTAA-TTTAAGATAATTT
9794846 AATAAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 2 0.07
33 27 0.93
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (33 bp):
TATTAACGTTTCTATCTAATTTAAGATAATTTG
Found at i:9798061 original size:63 final size:64
Alignment explanation
Indices: 9797990--9798117 Score: 249
Period size: 63 Copynumber: 2.0 Consensus size: 64
9797980 ACAAAGTAGT
9797990 TAGATAAATTGATTTCGTAAAAAGTATACAGTAAGGAGTTTTCAATCAC-GTACTTCTTGTGGA
1 TAGATAAATTGATTTCGTAAAAAGTATACAGTAAGGAGTTTTCAATCACGGTACTTCTTGTGGA
9798053 TAGATAAATTGATTTCGTAAAAAGTATACAGTAAGGAGTTTTCAATCACGGTACTTCTTGTGGA
1 TAGATAAATTGATTTCGTAAAAAGTATACAGTAAGGAGTTTTCAATCACGGTACTTCTTGTGGA
9798117 T
1 T
9798118 TGTTTTCAAT
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 49 0.77
64 15 0.23
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.35
Consensus pattern (64 bp):
TAGATAAATTGATTTCGTAAAAAGTATACAGTAAGGAGTTTTCAATCACGGTACTTCTTGTGGA
Found at i:9798134 original size:29 final size:29
Alignment explanation
Indices: 9798090--9798148 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
9798080 ACAGTAAGGA
*
9798090 GTTTTCAATCACGGTACTTCTTGTGGATT
1 GTTTTCAATCACGGTACTTCTCGTGGATT
*
9798119 GTTTTCAATCATGGTACTTCTCGTGGATT
1 GTTTTCAATCACGGTACTTCTCGTGGATT
9798148 G
1 G
9798149 ACTCCATGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.17, G:0.22, T:0.44
Consensus pattern (29 bp):
GTTTTCAATCACGGTACTTCTCGTGGATT
Found at i:9802006 original size:22 final size:24
Alignment explanation
Indices: 9801969--9802013 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
9801959 TGTAAAATCG
9801969 AATAATTGTCACATGTT-TATTAC
1 AATAATTGTCACATGTTATATTAC
*
9801992 AATAGTTG-CACATGTTATATTA
1 AATAATTGTCACATGTTATATTA
9802014 TTAACCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.42
Consensus pattern (24 bp):
AATAATTGTCACATGTTATATTAC
Found at i:9802222 original size:95 final size:93
Alignment explanation
Indices: 9802123--9802319 Score: 358
Period size: 95 Copynumber: 2.1 Consensus size: 93
9802113 CTGTAGTGAC
* *
9802123 TTATTGCTTCAATTAAGTTATTTTAAAATATATATAAACATATCAATATTCAAATTTAAAATTTC
1 TTATTGCTTCAAATAAGTTATTTTAAAATATATATAAACATACCAATATTCAAATTTAAAATTTC
9802188 CTCAATAGTCAAATGTCAAAACTATTTTTT
66 CTCAATAGTCAAATGTCAAAACTA--TTTT
9802218 TTATTGCTTCAAATAAGTTATTTTAAAATATATATAAACATACCAATATTCAAATTTAAAATTTC
1 TTATTGCTTCAAATAAGTTATTTTAAAATATATATAAACATACCAATATTCAAATTTAAAATTTC
9802283 CTCAATAGTCAAATGTCAAAACTATTTT
66 CTCAATAGTCAAATGTCAAAACTATTTT
9802311 TTATTGCTT
1 TTATTGCTT
9802320 TATAGACTCT
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
93 13 0.13
95 87 0.87
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.43
Consensus pattern (93 bp):
TTATTGCTTCAAATAAGTTATTTTAAAATATATATAAACATACCAATATTCAAATTTAAAATTTC
CTCAATAGTCAAATGTCAAAACTATTTT
Found at i:9802942 original size:15 final size:15
Alignment explanation
Indices: 9802919--9802949 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9802909 AAAAATATGA
9802919 ATATATTATTTTATT
1 ATATATTATTTTATT
*
9802934 ATATTTTATTTTATT
1 ATATATTATTTTATT
9802949 A
1 A
9802950 AATTAGTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
ATATATTATTTTATT
Found at i:9803682 original size:15 final size:15
Alignment explanation
Indices: 9803662--9803728 Score: 68
Period size: 15 Copynumber: 4.5 Consensus size: 15
9803652 TTCTAATACT
9803662 ATTATTATTTATCTA
1 ATTATTATTTATCTA
9803677 ATTATTATTTATCTA
1 ATTATTATTTATCTA
* *
9803692 TTTA-TATTTCTACT-
1 ATTATTATTTAT-CTA
9803706 ATTATTATATT-TCTA
1 ATTATTAT-TTATCTA
*
9803721 TTTATTAT
1 ATTATTAT
9803729 ATTTCTATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
14 11 0.25
15 31 0.70
16 2 0.05
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTATCTA
Found at i:9803706 original size:44 final size:42
Alignment explanation
Indices: 9803657--9803774 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 42
9803647 TGTTATTCTA
9803657 ATACTATTATTATTTATCTAATTATTATTTATCTATTTATATTT
1 ATACTATTATTATTT-TCTAATTATTATTT-TCTATTTATATTT
* * *
9803701 CTACTATTATTATATTTCTATTTATTATATTTCTATTTCTATTT
1 ATACTATTATTAT-TTTCTAATTATTAT-TTTCTATTTATATTT
*
9803745 ATAGACTAATATTATTTTC--ATTATTATTTT
1 AT--ACTATTATTATTTTCTAATTATTATTTT
9803775 TCTTATATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 3 0.05
43 7 0.11
44 36 0.56
45 8 0.12
46 10 0.16
ACGTcount: A:0.30, C:0.08, G:0.01, T:0.61
Consensus pattern (42 bp):
ATACTATTATTATTTTCTAATTATTATTTTCTATTTATATTT
Found at i:9803729 original size:15 final size:15
Alignment explanation
Indices: 9803693--9803738 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
9803683 ATTTATCTAT
9803693 TTATATTTCTACTATTA
1 TTATATTTCTA-T-TTA
9803710 TTATATTTCTATTTA
1 TTATATTTCTATTTA
9803725 TTATATTTCTATTT
1 TTATATTTCTATTT
9803739 CTATTTATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:9803736 original size:29 final size:29
Alignment explanation
Indices: 9803618--9803737 Score: 97
Period size: 29 Copynumber: 4.1 Consensus size: 29
9803608 TTATTGCTAT
* *
9803618 TATTATTATGTTTCTATTTA-TATTTATTT
1 TATTATTATATTTCTATTTATTATTTA-TC
* * * *
9803647 TGTTATTCTAATACTA-TTATTATTTATC
1 TATTATTATATTTCTATTTATTATTTATC
*
9803675 TAATTATTAT-TTATCTATTTA-TATTTCTAC
1 T-ATTATTATATT-TCTATTTATTATTTAT-C
9803705 TATTATTATATTTCTATTTATTATATT-TC
1 TATTATTATATTTCTATTTATTAT-TTATC
9803734 TATT
1 TATT
9803738 TCTATTTATA
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
28 6 0.08
29 53 0.74
30 11 0.15
31 2 0.03
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.63
Consensus pattern (29 bp):
TATTATTATATTTCTATTTATTATTTATC
Found at i:9803883 original size:3 final size:3
Alignment explanation
Indices: 9803875--9803909 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9803865 TTTAAAACTT
9803875 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9803910 TATTCACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9807341 original size:15 final size:16
Alignment explanation
Indices: 9807308--9807338 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9807298 AATTAAAATT
9807308 TTAAATATTAAAAAAA
1 TTAAATATTAAAAAAA
*
9807324 TTAAGTATTAAAAAA
1 TTAAATATTAAAAAA
9807339 TTACGAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
TTAAATATTAAAAAAA
Found at i:9823383 original size:17 final size:16
Alignment explanation
Indices: 9823353--9823398 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
9823343 TTATTTTTAT
9823353 ATAAAAA-A-TAAAAA
1 ATAAAAACATTAAAAA
*
9823367 ATATAATACATTAAAAA
1 ATA-AAAACATTAAAAA
*
9823384 CTAAAAACATTAAAA
1 ATAAAAACATTAAAA
9823399 TAAATATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 3 0.12
15 3 0.12
16 12 0.46
17 8 0.31
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.22
Consensus pattern (16 bp):
ATAAAAACATTAAAAA
Found at i:9823920 original size:21 final size:21
Alignment explanation
Indices: 9823896--9823937 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
9823886 AATTATTAGA
9823896 TTTGAATAATC-AATAAAATAT
1 TTTGAAT-ATCTAATAAAATAT
*
9823917 TTTGAATATCTAATAATATAT
1 TTTGAATATCTAATAAAATAT
9823938 ATTTATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (21 bp):
TTTGAATATCTAATAAAATAT
Found at i:9827946 original size:21 final size:21
Alignment explanation
Indices: 9827913--9827953 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
9827903 TAGGGAGATT
*
9827913 CAAAATAAATAAT-AATAAAA
1 CAAAAAAAATAATAAATAAAA
9827933 CAAAAAAAAGTAATAAATAAA
1 CAAAAAAAA-TAATAAATAAA
9827954 TAAATCAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 4 0.22
22 6 0.33
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (21 bp):
CAAAAAAAATAATAAATAAAA
Found at i:9829489 original size:176 final size:176
Alignment explanation
Indices: 9829262--9829793 Score: 843
Period size: 176 Copynumber: 3.0 Consensus size: 176
9829252 TCTTGCTGCT
* * * **
9829262 TCAGAGAGATAAGGCTGGTGGCTAAAATTTGCTCCATTACCGATACATGGAGATAAGATTTTCCA
1 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCA
* * *
9829327 TCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAGTTTGCTCCTCTGGA
66 TCTTCGATCTGCTCCACTACTGCTTAGG-AGATAAGATCTGTAATTTTCAGTCTGCTCCACTGCA
9829392 ACTTTAGGGAGATAAGACTTGTATCTTGAGCCTGCTCCA-TGCAACC
130 ACTTTAGGGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACC
* * * * * *
9829438 TTAGGGAGATAAGACTAGTGGCTTAAATCTGCTCTATTACCAATACATGGAGATAAGATTCGCCG
1 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCA
* *
9829503 TCTTCGATCTACTCCACTATTGCTTAGGGAGATAAGATCTGTAATTTTCAGTCTGCTCCACTGCA
66 TCTTCGATCTGCTCCACTACTGCTTA-GGAGATAAGATCTGTAATTTTCAGTCTGCTCCACTGCA
9829568 ACTTTAGGGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACC
130 ACTTTAGGGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACC
*
9829615 TCAGGGAGATAAGGTTGGTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCA
1 TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCA
* * *
9829680 TTTTCGATCTGCTCCGCTACTGTTTAGG-GATAAGATCTGTAATTTTCAGTCTGCTCCACTGCAA
66 TCTTCGATCTGCTCCACTACTGCTTAGGAGATAAGATCTGTAATTTTCAGTCTGCTCCACTGCAA
*
9829744 CTTCAGGGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACC
131 CTTTAGGGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACC
9829790 TCAG
1 TCAG
9829794 AGAGTATCTT
Statistics
Matches: 325, Mismatches: 29, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
175 85 0.26
176 152 0.47
177 88 0.27
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (176 bp):
TCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTCCATTACCGATACATGGAGATAAGATTCGCCA
TCTTCGATCTGCTCCACTACTGCTTAGGAGATAAGATCTGTAATTTTCAGTCTGCTCCACTGCAA
CTTTAGGGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACC
Found at i:9829603 original size:44 final size:43
Alignment explanation
Indices: 9829310--9830012 Score: 268
Period size: 44 Copynumber: 16.2 Consensus size: 43
9829300 ACCGATACAT
* * **
9829310 GGAGATAAGATTTTCCATCTTCGA-TCTGCTCCACTACTGCTT-AG
1 GGAGATAAGATTGT--ATCTT-GAGTCTGCTCCACTGCAACTTCAG
* * * * * * *
9829354 GAAGATAAGATCTGTAATTTTCAGTTTGCTCCTCTGGAACTTTAG
1 GGAGATAAGAT-TGT-ATCTTGAGTCTGCTCCACTGCAACTTCAG
*
9829399 GGAGATAAGACTTGTATCTTGAGCCTGCTCCA-TGCAACCTT-AG
1 GGAGATAAGA-TTGTATCTTGAGTCTGCTCCACTGCAA-CTTCAG
* ** * * * * * * *
9829442 GGAGATAAGACTAGTGGCTTAAATCTGCTCTATTACCAA-TACAT
1 GGAGATAAGA-TTGTATCTTGAGTCTGCTCCACT-GCAACTTCAG
** * ****
9829486 GGAGATAAGATTCGCCGTCTTCGA-TCTACTCCACTATTGCTT-AG
1 GGAGATAAGATT-G-TATCTT-GAGTCTGCTCCACTGCAACTTCAG
* * *
9829530 GGAGATAAGATCTGTAATTTTCAGTCTGCTCCACTGCAACTTTAG
1 GGAGATAAGAT-TGT-ATCTTGAGTCTGCTCCACTGCAACTTCAG
* *
9829575 GGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACCTCAG
1 GGAGATAAGA-TTGTATCTTGAGTCTGCTCCACTGCAACTTCAG
* ** * * * * * * *
9829619 GGAGATAAGGTTGGTGGCTTAAATCTGCTCCATTACCGA-TACAT
1 GGAGATAAGATT-GTATCTTGAGTCTGCTCCACT-GCAACTTCAG
* * * * ** *
9829663 GGAGATAAGATTCGCCATTTTCGA-TCTGCTCCGCTAC-TGTTTA-
1 GGAGATAAGATT-G-TATCTT-GAGTCTGCTCCACTGCAACTTCAG
* *
9829706 GG-GATAAGATCTGTAATTTTCAGTCTGCTCCACTGCAACTTCAG
1 GGAGATAAGAT-TGT-ATCTTGAGTCTGCTCCACTGCAACTTCAG
* *
9829750 GGAGATAAGACTTGTATCTTGAGCCTGCTCCACTGCAACCTC--
1 GGAGATAAGA-TTGTATCTTGAGTCTGCTCCACTGCAACTTCAG
* * *
9829792 --AG---AGA--GTATCTTGAGCCTGCTCCAATGCAACCTCAG
1 GGAGATAAGATTGTATCTTGAGTCTGCTCCACTGCAACTTCAG
* * * * * * * * * * * *
9829828 AGAGATAAGGCTGGCAGCTTAAATCTGTTCCATTGTCGA-TACAT
1 GGAGATAA-GATTGTATCTTGAGTCTGCTCCACTG-CAACTTCAG
* * *
9829872 GGAGATAAGATTCGCTGTCTTCGA-TCTGCTCCACTACTACTT-AG
1 GGAGATAAGATT-G-TATCTT-GAGTCTGCTCCACTGCAACTTCAG
*
9829916 GGAGATAAGATCTGTAAT-TTTAGTCTGCTCCACTGCAACTTCAG
1 GGAGATAAGAT-TGT-ATCTTGAGTCTGCTCCACTGCAACTTCAG
* *
9829960 GGAGATAAGACTTGTATCTTGAGTCTACTCCACTGCAACCTCAG
1 GGAGATAAGA-TTGTATCTTGAGTCTGCTCCACTGCAACTTCAG
9830004 GGAGATAAG
1 GGAGATAAG
9830013 GCTAGTAGCT
Statistics
Matches: 485, Mismatches: 124, Indels: 100
0.68 0.17 0.14
Matches are distributed among these distances:
34 28 0.06
37 3 0.01
38 2 0.00
40 2 0.00
41 2 0.00
42 27 0.06
43 66 0.14
44 261 0.54
45 88 0.18
46 6 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
GGAGATAAGATTGTATCTTGAGTCTGCTCCACTGCAACTTCAG
Found at i:9829806 original size:34 final size:34
Alignment explanation
Indices: 9829763--9829831 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
9829753 GATAAGACTT
*
9829763 GTATCTTGAGCCTGCTCCACTGCAACCTCAGAGA
1 GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGA
9829797 GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGA
1 GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGA
9829831 G
1 G
9829832 ATAAGGCTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (34 bp):
GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGA
Found at i:9829870 original size:209 final size:210
Alignment explanation
Indices: 9829588--9830003 Score: 665
Period size: 209 Copynumber: 2.0 Consensus size: 210
9829578 GATAAGACTT
* * * **
9829588 GTATCTTGAGCCTGCTCCACTGCAACCTCAGGGAGATAAGGTTGGTGGCTTAAATCTGCTCCATT
1 GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGAGATAAGGCTGGCAGCTTAAATCTGCTCCATT
* * **
9829653 ACCGATACATGGAGATAAGATTCGCCATTTTCGATCTGCTCCGCTACTGTTTA-GG-GATAAGAT
66 ACCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT
*
9829716 CTGTAATTTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTGCTCC
131 CTGTAATTTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCC
9829781 ACTGCAACCTCAGAGA
195 ACTGCAACCTCAGAGA
*
9829797 GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGAGATAAGGCTGGCAGCTTAAATCTGTTCCATT
1 GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGAGATAAGGCTGGCAGCTTAAATCTGCTCCATT
** **
9829862 GTCGATACATGGAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT
66 ACCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT
*
9829927 CTGTAATTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGTCTACTCCA
131 CTGTAATTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCCA
9829992 CTGCAACCTCAG
196 CTGCAACCTCAG
9830004 GGAGATAAGG
Statistics
Matches: 189, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
209 104 0.55
210 67 0.35
211 18 0.10
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.29
Consensus pattern (210 bp):
GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGAGATAAGGCTGGCAGCTTAAATCTGCTCCATT
ACCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGAT
CTGTAATTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGCCTACTCCA
CTGCAACCTCAGAGA
Found at i:9830031 original size:44 final size:44
Alignment explanation
Indices: 9829943--9830035 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
9829933 TTTTAGTCTG
* * * * *
9829943 CTCCACTGCAACTTCAGGGAGATAAGACTTGTATCTTGAGTCTA
1 CTCCACTGCAACCTCAGGGAGATAAGACTAGTAGCTTAAATCTA
*
9829987 CTCCACTGCAACCTCAGGGAGATAAGGCTAGTAGCTTAAATCTA
1 CTCCACTGCAACCTCAGGGAGATAAGACTAGTAGCTTAAATCTA
9830031 CTCCA
1 CTCCA
9830036 TTACCGATAC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (44 bp):
CTCCACTGCAACCTCAGGGAGATAAGACTAGTAGCTTAAATCTA
Found at i:9830035 original size:88 final size:87
Alignment explanation
Indices: 9829797--9830061 Score: 214
Period size: 88 Copynumber: 3.0 Consensus size: 87
9829787 ACCTCAGAGA
* * * * * *
9829797 GTATCTTGAGCCTGCTCCAATGCAACCTCAGAGAGATAAGGCTGGCAGCTTAAATCTGTTCCATT
1 GTATCTTGAGTCTGCTCCACTGCAACCTCAGGGAGATAAGGCT-GTAGCTTAAATCTGCTCCACT
* *
9829862 GTCGATACATGGAGATAAGATTC
65 GTCAATACAGGGAGATAAGATTC
* * * * * ** * *
9829885 GCTGTCTTCGA-TCTGCTCCACTACTA-CTTAGGGAGATAAGATCTGTAATTTTAGTCTGCTCCA
1 G-TATCTT-GAGTCTGCTCCACTGCAACCTCAGGGAGATAAG-GCTGTAGCTTAAATCTGCTCCA
*
9829948 CTG-CAACTTCAGGGAGATAAGACTT-
63 CTGTCAA-TACAGGGAGATAAGA-TTC
* * *
9829973 GTATCTTGAGTCTACTCCACTGCAACCTCAGGGAGATAAGGCTAGTAGCTTAAATCTACTCCATT
1 GTATCTTGAGTCTGCTCCACTGCAACCTCAGGGAGATAAGGCT-GTAGCTTAAATCTGCTCCACT
** * *
9830038 ACCGATACATGGAGATAAGATTC
65 GTCAATACAGGGAGATAAGATTC
9830061 G
1 G
9830062 CCGTCTTCGA
Statistics
Matches: 133, Mismatches: 34, Indels: 20
0.71 0.18 0.11
Matches are distributed among these distances:
86 2 0.02
87 23 0.17
88 84 0.63
89 22 0.17
90 2 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (87 bp):
GTATCTTGAGTCTGCTCCACTGCAACCTCAGGGAGATAAGGCTGTAGCTTAAATCTGCTCCACTG
TCAATACAGGGAGATAAGATTC
Found at i:9830094 original size:88 final size:86
Alignment explanation
Indices: 9829829--9830098 Score: 249
Period size: 88 Copynumber: 3.1 Consensus size: 86
9829819 CAACCTCAGA
* * *
9829829 GAGATAAGGCTGGCAGCTTAAATCTGTTCCATTGTCGATACATGGAGATAAGATTCGCTGTCTTC
1 GAGATAAGGCT-GTAGCTTAAATCTGCTCCATT-CCGATACATGGAGATAAGATTCGCTGTCTTC
9829894 GATCTGCTCCACTACTACTTAGG
64 GATCTGCTCCACTACTACTTAGG
* ** * * * * * * * *
9829917 GAGATAAGATCTGTAATTTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TATCTT
1 GAGATAAG-GCTGTAGCTTAAATCTGCTCCATTCCGA-TACATGGAGATAAGA-TTCGCTGTCTT
* * * *
9829980 -GAGTCTACTCCACTGCAACCTCAGG
63 CGA-TCTGCTCCACTACTA-CTTAGG
* *
9830005 GAGATAAGGCTAGTAGCTTAAATCTACTCCATTACCGATACATGGAGATAAGATTCGCCGTCTTC
1 GAGATAAGGCT-GTAGCTTAAATCTGCTCCATT-CCGATACATGGAGATAAGATTCGCTGTCTTC
*
9830070 GATCTGCTCCACTACTGCTTAGG
64 GATCTGCTCCACTACTACTTAGG
9830093 GAGATA
1 GAGATA
9830099 TGATCTGTAA
Statistics
Matches: 137, Mismatches: 35, Indels: 20
0.71 0.18 0.10
Matches are distributed among these distances:
86 2 0.01
87 23 0.17
88 89 0.65
89 21 0.15
90 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (86 bp):
GAGATAAGGCTGTAGCTTAAATCTGCTCCATTCCGATACATGGAGATAAGATTCGCTGTCTTCGA
TCTGCTCCACTACTACTTAGG
Found at i:9831235 original size:19 final size:19
Alignment explanation
Indices: 9831213--9831280 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
9831203 TTTTTCTCTT
9831213 TTTTGATTTTTTTATTTTA
1 TTTTGATTTTTTTATTTTA
* * *
9831232 TTTTTATTTTTTGA-TTGA
1 TTTTGATTTTTTTATTTTA
*
9831250 TTTT--TTTATTTATTATT-
1 TTTTGATTTTTTTATT-TTA
9831267 TTTTGATTTTTTTA
1 TTTTGATTTTTTTA
9831281 AGGTCTCAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
16 6 0.16
17 5 0.13
18 8 0.21
19 19 0.50
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.78
Consensus pattern (19 bp):
TTTTGATTTTTTTATTTTA
Found at i:9831253 original size:31 final size:35
Alignment explanation
Indices: 9831215--9831278 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 35
9831205 TTTCTCTTTT
9831215 TTGATTTTTTTA-TT-TTA-TTTTT-ATTTTTTGA
1 TTGATTTTTTTATTTATTATTTTTTGATTTTTTGA
9831246 TTGATTTTTTTATTTATTATTTTTTGATTTTTT
1 TTGATTTTTTTATTTATTATTTTTTGATTTTTT
9831279 TAAGGTCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
31 12 0.41
32 2 0.07
33 3 0.10
34 5 0.17
35 7 0.24
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.78
Consensus pattern (35 bp):
TTGATTTTTTTATTTATTATTTTTTGATTTTTTGA
Found at i:9831265 original size:27 final size:27
Alignment explanation
Indices: 9831211--9831274 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
9831201 CTTTTTTCTC
**
9831211 TTTTTTGATTTTTTTATTTTATTTTTA
1 TTTTTTGATTGATTTATTTTATTTTTA
9831238 TTTTTTGATTGATTT-TTTTATTTATTA
1 TTTTTTGATTGATTTATTTTATTT-TTA
9831265 TTTTTTGATT
1 TTTTTTGATT
9831275 TTTTTAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 8 0.24
27 26 0.76
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.78
Consensus pattern (27 bp):
TTTTTTGATTGATTTATTTTATTTTTA
Found at i:9831275 original size:23 final size:23
Alignment explanation
Indices: 9831218--9831280 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
9831208 CTCTTTTTTG
* *
9831218 ATTTTTTTATTTTATT-TTTATT
1 ATTTTTTGATTTTTTTATTTATT
9831240 -TTTTGATTGATTTTTTTATTTATT
1 ATTTT--TTGATTTTTTTATTTATT
9831264 ATTTTTTGATTTTTTTA
1 ATTTTTTGATTTTTTTA
9831281 AGGTCTCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
21 4 0.11
23 21 0.60
24 6 0.17
25 4 0.11
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (23 bp):
ATTTTTTGATTTTTTTATTTATT
Found at i:9838302 original size:15 final size:16
Alignment explanation
Indices: 9838282--9838311 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9838272 TGAGTATAGC
9838282 AAATA-TTAAAAAAAT
1 AAATATTTAAAAAAAT
9838297 AAATATTTAAAAAAA
1 AAATATTTAAAAAAA
9838312 AGAGATTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATATTTAAAAAAAT
Found at i:9846444 original size:31 final size:31
Alignment explanation
Indices: 9846406--9846530 Score: 112
Period size: 31 Copynumber: 4.1 Consensus size: 31
9846396 GAACATTTTC
9846406 AAAGTACAAGTACCACATTAGACATTTTATG
1 AAAGTACAAGTACCACATTAGACATTTTATG
* * * ****
9846437 AAAGTACAAGTACCAAATAATACAAAAAATG
1 AAAGTACAAGTACCACATTAGACATTTTATG
* *
9846468 ATAGTTCAAGTACCACATTAGACATTTT-T-
1 AAAGTACAAGTACCACATTAGACATTTTATG
* * *
9846497 AAAATACAAGTAACGCATT-GAACATTTTATG
1 AAAGTACAAGTACCACATTAG-ACATTTTATG
9846528 AAA
1 AAA
9846531 ATATAGGTAT
Statistics
Matches: 70, Mismatches: 21, Indels: 6
0.72 0.22 0.06
Matches are distributed among these distances:
28 1 0.01
29 21 0.30
30 2 0.03
31 46 0.66
ACGTcount: A:0.47, C:0.14, G:0.11, T:0.27
Consensus pattern (31 bp):
AAAGTACAAGTACCACATTAGACATTTTATG
Found at i:9846803 original size:26 final size:26
Alignment explanation
Indices: 9846770--9846824 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
9846760 TAAAAGTCAA
9846770 ATGTTCATTATTTCTATGTTTCTATG
1 ATGTTCATTATTTCTATGTTTCTATG
9846796 ATGTTCATTATTTCTATGTTTCTATG
1 ATGTTCATTATTTCTATGTTTCTATG
9846822 ATG
1 ATG
9846825 GAAAAATACT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.20, C:0.11, G:0.13, T:0.56
Consensus pattern (26 bp):
ATGTTCATTATTTCTATGTTTCTATG
Found at i:9853123 original size:23 final size:23
Alignment explanation
Indices: 9853105--9853155 Score: 93
Period size: 23 Copynumber: 2.2 Consensus size: 23
9853095 AGGAGAACAA
9853105 AAAAGGATGTAAGATGAGAGAGC
1 AAAAGGATGTAAGATGAGAGAGC
9853128 AAAAGGATGTAAGATGAGAGAGC
1 AAAAGGATGTAAGATGAGAGAGC
*
9853151 GAAAG
1 AAAAG
9853156 TGAGAATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.49, C:0.04, G:0.35, T:0.12
Consensus pattern (23 bp):
AAAAGGATGTAAGATGAGAGAGC
Found at i:9861437 original size:17 final size:14
Alignment explanation
Indices: 9861405--9861431 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9861395 AGATTTTATC
9861405 TATTATTCTTAATA
1 TATTATTCTTAATA
9861419 TATTATTCTTAAT
1 TATTATTCTTAAT
9861432 TGTATAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTATTCTTAATA
Found at i:9872915 original size:3 final size:3
Alignment explanation
Indices: 9872907--9872946 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
9872897 TTGATAAAAT
9872907 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
9872947 GTAAATATCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Done.