Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 52 of 325
Found at i:13473732 original size:18 final size:18
Alignment explanation
Indices: 13473709--13473750 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
13473699 AATTATATGA
*
13473709 AAACCCAACTAAACCTCT
1 AAACCCAACTAAAACTCT
13473727 AAACCC-ACTAAAACTCT
1 AAACCCAACTAAAACTCT
*
13473744 TAACCCA
1 AAACCCA
13473751 TGACCCATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (18 bp):
AAACCCAACTAAAACTCT
Found at i:13473836 original size:15 final size:15
Alignment explanation
Indices: 13473818--13473852 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
13473808 AACCTAACCC
13473818 AAAAAAAA-AACAAAG
1 AAAAAAAAGAA-AAAG
13473833 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
13473848 AAAAA
1 AAAAA
13473853 CCTACCCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 17 0.89
16 2 0.11
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:13473867 original size:16 final size:16
Alignment explanation
Indices: 13473848--13473883 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
13473838 AAAGAAAAAG
13473848 AAAAACCT-ACCCCAA
1 AAAAACCTAACCCCAA
13473863 AAAAACCTAACCCCAA
1 AAAAACCTAACCCCAA
13473879 AAAAA
1 AAAAA
13473884 AAAGAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.61, C:0.33, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAACCTAACCCCAA
Found at i:13473924 original size:43 final size:42
Alignment explanation
Indices: 13473805--13473924 Score: 109
Period size: 43 Copynumber: 2.7 Consensus size: 42
13473795 GCCCCCCAAA
*
13473805 AAAAACCTAACCCAAAAAAAA-AACAAAGAAAAAAAAGAAAAAG
1 AAAAACCTAA--CAAAAAAAATAACAAAAAAAAAAAAGAAAAAG
* *
13473848 AAAAACCTACCCCAAAAAAACCTAACCCCAAAAAAAAAAGAAGAAAAAG
1 AAAAACCTA--ACAAAAAAA-ATAA---CAAAAAAAAAA-AAGAAAAAG
13473897 AAAAACCTAACAAAAAAAGATAA-AAAAA
1 AAAAACCTAACAAAAAAA-ATAACAAAAA
13473925 CCTAGCCACC
Statistics
Matches: 63, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
43 22 0.35
45 2 0.03
47 11 0.17
48 10 0.16
49 18 0.29
ACGTcount: A:0.72, C:0.17, G:0.06, T:0.04
Consensus pattern (42 bp):
AAAAACCTAACAAAAAAAATAACAAAAAAAAAAAAGAAAAAG
Found at i:13474482 original size:2 final size:2
Alignment explanation
Indices: 13474477--13474507 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
13474467 TAAATACTAT
*
13474477 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13474508 TTTAAATACC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:13474759 original size:2 final size:2
Alignment explanation
Indices: 13474752--13474783 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
13474742 TATTATATGC
13474752 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13474784 GTATTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13476527 original size:12 final size:12
Alignment explanation
Indices: 13476507--13476542 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
13476497 ATTCATTTAA
13476507 CATTCATGCATT
1 CATTCATGCATT
*
13476519 CATTTATGCATT
1 CATTCATGCATT
*
13476531 CATTCATTCATT
1 CATTCATGCATT
13476543 GCATATTCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.22, G:0.06, T:0.47
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:13483541 original size:70 final size:68
Alignment explanation
Indices: 13483422--13483843 Score: 399
Period size: 70 Copynumber: 6.2 Consensus size: 68
13483412 GAGTTAAGCC
*
13483422 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTG-TTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGC
13483486 TGAGGTA
62 TGAGGTA
* * * * *
13483493 TTTTCAATTTTTGTGTTTTAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTG
1 TTTTCAATTTTTGT-TTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTG
13483558 AGGTA
64 AGGTA
* *
13483563 TTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCTG
1 TTTTCAATTTTTGTTTT--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTG
13483628 AGGTA
64 AGGTA
* * * ** * * *
13483633 TTTTTAGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT--------TTTA-
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAG
13483689 --A
66 GTA
** ** *
13483690 TTTT-TGTTTTTCA---AAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGA
13483751 GGTA
65 GGTA
* *
13483755 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAA-TTTT-TGTTTTAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGC
13483820 TGAGGTA
62 TGAGGTA
*
13483827 TTTTCAATTTCTGTTTT
1 TTTTCAATTTTTGTTTT
13483844 CAATTTACGT
Statistics
Matches: 287, Mismatches: 41, Indels: 47
0.77 0.11 0.13
Matches are distributed among these distances:
53 31 0.11
56 5 0.02
57 5 0.02
60 2 0.01
62 2 0.01
65 5 0.02
67 4 0.01
68 32 0.11
69 3 0.01
70 91 0.32
71 43 0.15
72 64 0.22
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (68 bp):
TTTTCAATTTTTGTTTTAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAG
GTA
Found at i:13483729 original size:121 final size:124
Alignment explanation
Indices: 13483564--13483809 Score: 383
Period size: 121 Copynumber: 2.0 Consensus size: 124
13483554 GTTGAGGTAT
13483564 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCTG
1 TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
* *
13483628 AGGTATTTT-TA-GTTTATGTTTTAAATT-GACTCATATTGCGAGAGGTGAGTTAAGCC
66 AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
* *
13483684 TTTTAATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTTTG-TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCT
* * * *
13483749 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCC
65 GAGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
13483809 T
1 T
13483810 CAGGTCACGC
Statistics
Matches: 113, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
120 12 0.11
121 40 0.35
122 19 0.17
123 1 0.01
124 13 0.12
125 28 0.25
ACGTcount: A:0.24, C:0.14, G:0.22, T:0.39
Consensus pattern (124 bp):
TTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTG
AGGTATTTTCAATGTTTATGTTTTAAATTCAACTCATATTGCGAGAGGTGAGTTAAGCC
Found at i:13483752 original size:262 final size:257
Alignment explanation
Indices: 13483255--13483846 Score: 1042
Period size: 262 Copynumber: 2.3 Consensus size: 257
13483245 TTTCAAGGAA
*
13483255 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTGTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
13483320 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
13483385 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
131 TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
13483450 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
196 CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
13483512 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
1 AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
13483577 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGG-CACGCTGAGGTATTTTTAGT
66 TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTA---TT--T
13483641 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
126 TTA-GTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAA
13483706 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
190 TCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGT
13483771 TTT
255 TTT
* * * * * *
13483774 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCT
1 AA--TCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
13483839 GTTTTCAA
64 GTTTTCAA
13483847 TTTACGTTGT
Statistics
Matches: 320, Mismatches: 7, Indels: 9
0.95 0.02 0.03
Matches are distributed among these distances:
256 12 0.04
257 108 0.34
259 2 0.01
261 4 0.01
262 131 0.41
264 63 0.20
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.37
Consensus pattern (257 bp):
AATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTGT
TTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTTAGT
TTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACT
CATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTGTGTTTT
Found at i:13483805 original size:72 final size:71
Alignment explanation
Indices: 13483684--13483849 Score: 244
Period size: 72 Copynumber: 2.3 Consensus size: 71
13483674 GAGTTAAGCC
** * *
13483684 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
13483748 TGAGGTA
65 TGAGGTA
*
13483755 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGC
13483820 TGAGGTA
65 TGAGGTA
* *
13483827 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
13483850 ACGTTGTTCA
Statistics
Matches: 86, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 12 0.14
72 70 0.81
73 4 0.05
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCT
GAGGTA
Found at i:13484180 original size:74 final size:76
Alignment explanation
Indices: 13484074--13484218 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 76
13484064 TTTTTGCCTT
*
13484074 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACG-CTGAGGTAATTT
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTC-GAGGTAATTT
13484136 CAATTTCTGTTG
65 CAATTTCTGTTG
* * *
13484148 TCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
13484213 AATTTC
66 AATTTC
13484219 CATTTTTCAA
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
74 42 0.66
76 21 0.33
77 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (76 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAATTTC
AATTTCTGTTG
Found at i:13484186 original size:165 final size:166
Alignment explanation
Indices: 13483914--13484392 Score: 707
Period size: 165 Copynumber: 2.9 Consensus size: 166
13483904 CTACTTTTTC
13483914 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * *
13483979 GTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
* *
13484044 TTTCAATTTCCGTTTTTCAATTTTTGCCTTTC-AAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
13484079 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
13484144 GTTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
13484209 TTTCAATTTCCATTTTTCAATTTCTGCATTTCAAAAAAAAAA
131 TTTCAATTTCCGTTTTTCAATTTCTGCATTTC------AAAA
*
13484251 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * * * ** * *
13484316 GTTTTC--AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTAT
66 GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
*
13484377 TTTCAATTTCTGTTTT
131 TTTCAATTTCCGTTTT
13484393 CAAAAAATCA
Statistics
Matches: 287, Mismatches: 20, Indels: 11
0.90 0.06 0.03
Matches are distributed among these distances:
165 154 0.54
168 27 0.09
170 34 0.12
172 72 0.25
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (166 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGTCAAAAAAATCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGTCGAGGTAT
TTTCAATTTCCGTTTTTCAATTTCTGCATTTCAAAA
Found at i:13484333 original size:72 final size:73
Alignment explanation
Indices: 13484249--13484755 Score: 406
Period size: 72 Copynumber: 6.5 Consensus size: 73
13484239 TCAAAAAAAA
*
13484249 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
13484314 CTGTTTTC
66 CTGTTTTC
* * ** ** *
13484322 -AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
13484386 CTGTTTTC
66 CTGTTTTC
* * * ** *
13484394 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACA--CGCTGAGGTATTTTCAAT
*
13484459 TTCTATCTTTC
64 TTCTGT-TTTC
* ** *
13484470 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTA--TTTTC
* *
13484535 AATTTATATTTTTC
61 AATTTCT-GTTTTC
* * *
13484549 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCA
**
13484613 AAATCTGTTTTTC
62 ATTTCTG-TTTTC
* * **
13484626 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGA
*
13484691 GCTATTTTCAATTTCTGTTTTTTTTTC
52 GGTATTTTCAATTTCTG-----TTTTC
13484718 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
13484756 TTTTTAATTT
Statistics
Matches: 348, Mismatches: 53, Indels: 57
0.76 0.12 0.12
Matches are distributed among these distances:
72 64 0.18
73 33 0.09
75 21 0.06
76 4 0.01
77 57 0.16
78 5 0.01
79 64 0.18
80 1 0.00
81 5 0.01
82 29 0.08
86 2 0.01
88 54 0.16
89 1 0.00
91 2 0.01
92 6 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:13484572 original size:79 final size:76
Alignment explanation
Indices: 13484248--13484965 Score: 427
Period size: 88 Copynumber: 9.0 Consensus size: 76
13484238 TTCAAAAAAA
** *
13484248 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACGCTGAGGTAATTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
13484311 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * *
13484322 --AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCA-A-GACACGTTGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
13484383 TTTCTGTTTTC
66 TTTCTGTTTTC
* * ** * ** *
13484394 -AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
*
13484458 TTTCTATCTTTC
66 TTTCTGT-TTTC
* *
13484470 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTA--TTTTC
* *
13484535 AATTTATATTTTTC
64 AATTTCT-GTTTTC
* * * * * *
13484549 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTTACATG-TCGAGGTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCT-GAGGTATTTTCA
**
13484613 AAATCTGTTTTTC
65 ATTTCTG-TTTTC
* ** * **
13484626 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 -AA----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
13484691 GCTATTTTCAATTTCTGTTTTTTTTTC
55 GGTATTTTCAATTTCTG-----TTTTC
* * * * * *
13484718 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTCTGCGAGAGTTGAGTT
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--CTCAGA--TC-AC-A-CGCTGAGGT
*
13484782 GAGTCTTTTAATTTCTGTTTTTC
58 -A-T-TTTCAATTTCTG-TTTTC
* **
13484805 --AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCT-GAGGTATTTTC
**
13484866 AAAATCTGCTTTTC
64 AATTTCTG-TTTTC
** * *
13484880 AAGTTAAGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGA
1 ------A-----AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGA
*
13484945 GCTATTTTCAATTTCTGTTTT
55 GGTATTTTCAATTTCTGTTTT
13484966 TAATGTCTGT
Statistics
Matches: 503, Mismatches: 84, Indels: 101
0.73 0.12 0.15
Matches are distributed among these distances:
72 64 0.13
73 31 0.06
75 36 0.07
76 5 0.01
77 63 0.13
78 7 0.01
79 64 0.13
80 2 0.00
81 7 0.01
82 30 0.06
83 1 0.00
84 31 0.06
85 7 0.01
86 1 0.00
87 11 0.02
88 120 0.24
89 3 0.01
90 1 0.00
91 13 0.03
92 6 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (76 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCTGAGGTATTTTCAA
TTTCTGTTTTC
Found at i:13484626 original size:14 final size:13
Alignment explanation
Indices: 13484607--13484642 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
13484597 TGTCGAGGTA
13484607 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
13484620 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
13484634 TTTTCAAAA
1 TTTTCAAAA
13484643 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:13484727 original size:399 final size:392
Alignment explanation
Indices: 13483909--13484755 Score: 931
Period size: 399 Copynumber: 2.1 Consensus size: 392
13483899 AATTTCTACT
*
13483909 TTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
* * *
13483973 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCG
66 ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGACCCTCAGGTCACACGCCG
*
13484038 AGGTATTTTCAATTTCCGTTTTTCAATTTTTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGG
131 AGCTATTTTCAATTTCC----TT-AA---TT-CCTTTCAAAAAAATCAACTCATATTGCGAGAGG
* * * * **
13484103 TGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTAT
187 TGAGTTGAGCCTCAGCACACACTGAGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTCACAT
** *
13484168 TGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTCAATTTCCATTTTTCAATTTC
252 TGCGAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTCAAAATCCATTTTTCAAATTC
* *
13484233 TGCATTTCAAAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
317 TGCATTTC--------AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCACACGCT
*
13484298 GAGGTAATTTCAATTTCTG
374 GAGCTAATTTCAATTTCTG
* ** * *
13484317 TTTTCAAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
* * * * ** *
13484382 ATTTCTGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCT-TGGCTCATGCGCT
66 ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGACCCTCAGG-TCACACGCC
13484445 GAGCTATTTTCAATTT-C-T-A-T-CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
130 GAGCTATTTTCAATTTCCTTAATTCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * *
13484505 GCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGC
195 GCCTCAG--CACACACTGAGGTA--ATTTCAATTTAT-GTTGTCAAAAAAATCAACTCACATTGC
* * * * * **
13484570 GAGATGTGAGTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCTG-
255 GAGAGGTGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTCAAAATCCATTTTTCAAATTCTGC
* * * *
13484634 TTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTT
320 ATTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCACAC--GCTGAGCTAATT
13484698 TCAATTTCTG
383 TCAATTTCTG
13484708 TTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -----TTTTC---AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
13484756 TTTTTAATTT
Statistics
Matches: 375, Mismatches: 47, Indels: 43
0.81 0.10 0.09
Matches are distributed among these distances:
389 41 0.11
391 20 0.05
394 46 0.12
396 18 0.05
398 14 0.04
399 108 0.29
400 1 0.00
402 1 0.00
407 3 0.01
408 63 0.17
409 60 0.16
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (392 bp):
TTTTCAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCA
ATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGACCCTCAGGTCACACGCCG
AGCTATTTTCAATTTCCTTAATTCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGCACACACTGAGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTCACATTGCGAGAGG
TGAGTTGAGCCTCAGATCACACGTCGAGGTATTTTCAAAATCCATTTTTCAAATTCTGCATTTCA
AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGCACACGCTGAGCTAATTTCAATTTC
TG
Found at i:13484773 original size:30 final size:30
Alignment explanation
Indices: 13484737--13484798 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
13484727 CAACTCATAT
13484737 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
13484767 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
13484797 TG
1 TG
13484799 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:13484899 original size:254 final size:248
Alignment explanation
Indices: 13484388--13484966 Score: 762
Period size: 254 Copynumber: 2.3 Consensus size: 248
13484378 TTCAATTTCT
* * *
13484388 GTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGACCCTTGGCTCATGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
*
13484453 TTCAATTTC----TATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
66 TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
* *
13484514 CACACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGA
131 CACACACTGAGGTATCTTTTCAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGA
* ** * * * **
13484579 GTTGAGCCTCGGGTTACATGTCGAGGTATTTTCAAAATCTGTTTTTCAAATTCT
195 GTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
* *
13484633 GTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
* *
13484697 TTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA
66 TTCAATTTCTGTTTTTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCA
* * * * * * *
13484762 -ATTTCTGCGAGAGTTGAGTTGAGTCTTTT-AATTTCTGTTTTTC-AAAAATCAACTCATATTGC
128 GA--TC-AC-ACA-CTGAGGT-A-TCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGC
*
13484824 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAA
186 GAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
13484887 G-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
1 GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
13484951 TTCAATTTCTGTTTTT
66 TTCAATTTCTGTTTTT
13484967 AATGTCTGTT
Statistics
Matches: 291, Mismatches: 28, Indels: 21
0.86 0.08 0.06
Matches are distributed among these distances:
244 62 0.21
245 6 0.02
248 13 0.04
249 30 0.10
250 1 0.00
251 3 0.01
252 2 0.01
253 5 0.02
254 146 0.50
255 5 0.02
256 13 0.04
257 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
GTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATT
TTCAATTTCTGTTTTTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGAT
CACACACTGAGGTATCTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAG
TTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCAAATTAA
Found at i:13485630 original size:17 final size:17
Alignment explanation
Indices: 13485610--13485645 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
13485600 AACCTAACCC
*
13485610 AAAAAAAA-ACAAAGAA
1 AAAAAAAAGAAAAAGAA
13485626 AAAAAAAAGAAAAAGAA
1 AAAAAAAAGAAAAAGAA
13485643 AAA
1 AAA
13485646 CCTACCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.89, C:0.03, G:0.08, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAGAA
Found at i:13485644 original size:11 final size:11
Alignment explanation
Indices: 13485612--13485645 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
13485602 CCTAACCCAA
13485612 AAAAAAACAAAG
1 AAAAAAA-AAAG
13485624 AAAAAAAAAAG
1 AAAAAAAAAAG
13485635 AAAAAGAAAAA
1 AAAAA-AAAAA
13485646 CCTACCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.88, C:0.03, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:13485657 original size:13 final size:15
Alignment explanation
Indices: 13485641--13485673 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
13485631 AAAGAAAAAG
13485641 AAAAACCT-A-CCAA
1 AAAAACCTAACCCAA
13485654 AAAAACCTAACCCAA
1 AAAAACCTAACCCAA
13485669 AAAAA
1 AAAAA
13485674 AAAAGAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 1 0.06
15 9 0.50
ACGTcount: A:0.67, C:0.27, G:0.00, T:0.06
Consensus pattern (15 bp):
AAAAACCTAACCCAA
Found at i:13485714 original size:58 final size:57
Alignment explanation
Indices: 13485595--13485720 Score: 139
Period size: 57 Copynumber: 2.2 Consensus size: 57
13485585 TAAGCCCCCA
* * ***
13485595 AAAAAAACCTAACCCAAAAAAAAACAAAGAAAAAAAAAAGAAAAAGAAAAACCTACC
1 AAAAAAACCTAACCCAAAAAAAAAAAAAGAAAAAAAAAAGAAAAACAAAAAAAGACC
** *
13485652 AAAAAAACCTAACCCAAAAAAAAAAAGAAGAAAAAAGAAAA-ACCTAACAAAAAAAGA-T
1 AAAAAAACCTAACCCAAAAAAAAAAA-AAGAAAAAA-AAAAGA-AAAACAAAAAAAGACC
13485710 AAAAAAACCTA
1 AAAAAAACCTA
13485721 GCCACCTAAC
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
57 25 0.43
58 21 0.36
59 12 0.21
ACGTcount: A:0.74, C:0.16, G:0.06, T:0.05
Consensus pattern (57 bp):
AAAAAAACCTAACCCAAAAAAAAAAAAAGAAAAAAAAAAGAAAAACAAAAAAAGACC
Found at i:13489976 original size:21 final size:21
Alignment explanation
Indices: 13489952--13490009 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
13489942 TATCTGGGAT
* *
13489952 CATCACATGACATTCTTGCTG
1 CATCAAATGACATCCTTGCTG
* *
13489973 CATCAAAAGACATCCTTGGTG
1 CATCAAATGACATCCTTGCTG
13489994 CATCAAATGACATCCT
1 CATCAAATGACATCCT
13490010 CCCAGCATCA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.28
Consensus pattern (21 bp):
CATCAAATGACATCCTTGCTG
Found at i:13497178 original size:2 final size:2
Alignment explanation
Indices: 13497171--13497212 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
13497161 TTAGTAAGTG
13497171 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13497213 ATGTGTAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13498185 original size:334 final size:328
Alignment explanation
Indices: 13497571--13498234 Score: 1078
Period size: 334 Copynumber: 2.0 Consensus size: 328
13497561 TTCATGGGCC
* *
13497571 TTTTTACCAAGTTAGTACCCGGACCCCATAGCATTATCATGTAGCACCCGCTCATTAAGCTACTC
1 TTTTTACCAAGTTAGTACCCGGACCCCATAGCACTATCATGTAACACCCGCTCATTAAGCTACTC
* *
13497636 ACGAGTCTGTACAAAAAGTCAGCACCCGGACCCATATAGAGTTAACATGAAATGCTCGTTCAGCG
66 ACGAGTCTGTACAAAAAGTCAGCACCCGGACCCATATAGAGTTAACATAAAATACTCGTTCAGCG
* * *
13497701 AGTTACTCACTGGTTTAGTCACAAAGTCAATACCCGGACCCACATTACATATAACATTTATCTCA
131 AGTTACTCACGGGTTTAGTCACAAAGTCAATACCCAGACCCACATTACATATAACATTTATCTAA
13497766 TGAACTCAGACACAACTCATGAGTTCAGACCACATAGTTTTTCATGACATACCTTGTGTATCCTA
196 TGAACTCAGACACAACTCATGAGTTCAGACCACATAGTTTTTCATGACATACCTTGTGTATCCTA
* *
13497831 TACTATTCCTGAGGTTCAACGAGATT-TCATATCTAACCCGATGTCATCGCACTTGCTCATAATG
261 TACAATTCCTGAGATTCAACGAGATTAT-ATATCTAACCCGATGTCATCGCACTTGCTCATAATG
13497895 TAGG
325 TAGG
** *
13497899 TTTTTACCAAGTTAGTACTTGGACCCCATAGCACTATCATGTAACACCCGTTCATTAAGCTACTC
1 TTTTTACCAAGTTAGTACCCGGACCCCATAGCACTATCATGTAACACCCGCTCATTAAGCTACTC
* * *
13497964 ACGGGTCTGTACAAAATGTCAGCACCCGGACCCATATAGCGTTAACATAAAATACTCGCTTAGCG
66 ACGAGTCTGTACAAAAAGTCAGCACCCGGACCCATATAGAGTTAACATAAAATACTCG--T----
* *
13498029 TCAGCGAGTTACTCACGGGTTTAGTCACGAAGTCAGTACCCAGACCCACATTACATATAACATTT
125 TCAGCGAGTTACTCACGGGTTTAGTCACAAAGTCAATACCCAGACCCACATTACATATAACATTT
13498094 ATCTAATGAACTCAGACACAACTCATGAGTTCAGACCACATAGTTTTTCATGACATACCTTGTGT
190 ATCTAATGAACTCAGACACAACTCATGAGTTCAGACCACATAGTTTTTCATGACATACCTTGTGT
* * *
13498159 ATCCTATACAATTCTTGAGATTCAACGAGATTATTTATCTAACCTGATGTCATCGCACTTGCTCA
255 ATCCTATACAATTCCTGAGATTCAACGAGATTATATATCTAACCCGATGTCATCGCACTTGCTCA
13498224 TAATGTAGG
320 TAATGTAGG
13498233 TT
1 TT
13498235 ACTTTTGTAT
Statistics
Matches: 309, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
328 113 0.37
330 1 0.00
334 194 0.63
335 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (328 bp):
TTTTTACCAAGTTAGTACCCGGACCCCATAGCACTATCATGTAACACCCGCTCATTAAGCTACTC
ACGAGTCTGTACAAAAAGTCAGCACCCGGACCCATATAGAGTTAACATAAAATACTCGTTCAGCG
AGTTACTCACGGGTTTAGTCACAAAGTCAATACCCAGACCCACATTACATATAACATTTATCTAA
TGAACTCAGACACAACTCATGAGTTCAGACCACATAGTTTTTCATGACATACCTTGTGTATCCTA
TACAATTCCTGAGATTCAACGAGATTATATATCTAACCCGATGTCATCGCACTTGCTCATAATGT
AGG
Found at i:13530635 original size:47 final size:46
Alignment explanation
Indices: 13530562--13530734 Score: 165
Period size: 47 Copynumber: 3.7 Consensus size: 46
13530552 CCACATTATG
* *
13530562 AGTGCTAGTATAAGACCATGTCTGGGAGATGGCATCGGCGTAGAGATA
1 AGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGTAGAGATA
* * * *
13530610 AGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATT
1 AGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGA-GATA
* * * * *
13530657 A-TAGCCAGTGTAAGACGTGTTTGGGACACGCATCGAC-TA-AGAGT-
1 AGT-GCTAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGA-TA
*
13530701 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 AGTGCTAGTGTAAGACATGTCTGGGACATGCATC
13530735 AGCACGTGTA
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
44 29 0.28
45 3 0.03
46 13 0.12
47 47 0.45
48 13 0.12
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (46 bp):
AGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCGTAGAGATA
Found at i:13531724 original size:55 final size:55
Alignment explanation
Indices: 13531598--13531724 Score: 155
Period size: 55 Copynumber: 2.3 Consensus size: 55
13531588 TAAACTTTTT
* * *
13531598 AGTCAGTGTTGTACATGGGTAGGCCACACGGGCGTGTACCATGGCCGTGTCTTAA
1 AGTCAGTGTTGTACACGGGCAGGCCACACGGGCATGTACCATGGCCGTGTCTTAA
* * * * * * *
13531653 AGTCAGTATCGTACACGGGCAGGTCACACGGGCATGTGCCATGGCTGTGTGTTGA
1 AGTCAGTGTTGTACACGGGCAGGCCACACGGGCATGTACCATGGCCGTGTCTTAA
*
13531708 AGTCAGTGTTGCACACG
1 AGTCAGTGTTGTACACG
13531725 AGCTAAGGAC
Statistics
Matches: 59, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 59 1.00
ACGTcount: A:0.20, C:0.22, G:0.33, T:0.24
Consensus pattern (55 bp):
AGTCAGTGTTGTACACGGGCAGGCCACACGGGCATGTACCATGGCCGTGTCTTAA
Found at i:13537536 original size:48 final size:46
Alignment explanation
Indices: 13537441--13537657 Score: 201
Period size: 47 Copynumber: 4.7 Consensus size: 46
13537431 ATTTCTTGTA
**
13537441 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAG
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAG
* *
13537487 TGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCGTA-AAGATGAG
1 TGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACAAGATGAG
* *
13537535 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA-
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-AAGATGAG
* * * * * * *
13537581 TATCCAGTGTAAGACGTGTCTTGGACACGCATCAG-C-TAAGA-GTTG
1 T-GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATG-AG
* * *
13537626 TGCTAGTGTAAGACATGCCTGGGACATCCATC
1 TGCCAGTGTAAGACATGTCTGGGACATGCATC
13537658 AGCACGTATA
Statistics
Matches: 140, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 27 0.19
45 1 0.01
46 22 0.16
47 62 0.44
48 26 0.19
49 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (46 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACAAGATGAG
Found at i:13537607 original size:94 final size:91
Alignment explanation
Indices: 13537441--13537657 Score: 251
Period size: 94 Copynumber: 2.4 Consensus size: 91
13537431 ATTTCTTGTA
*
13537441 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGTGCCAGTATAAGACCATGT
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGTGCCAGTATAAGACCATGT
* *
13537506 CTGGGACATGGCATCGGCGTAA-AGATGAG
66 CTGGGACA-CGCATCAGC-TAAGAG-T-AG
* * * *
13537535 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATGATGA-TATCCAGTGTAAGA-CGT
1 TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGT-GCCAGTATAAGACCAT
* *
13537598 GTCTTGGACACGCATCAGCTAAGAGTTG
64 GTCTGGGACACGCATCAGCTAAGAGTAG
* * *
13537626 TGCTAGTGTAAGACATGCCTGGGACATCCATC
1 TGCCAGTGTAAGACATGTCTGGGACATGCATC
13537658 AGCACGTATA
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
91 30 0.28
92 4 0.04
93 9 0.08
94 49 0.45
95 16 0.15
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (91 bp):
TGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGTGCCAGTATAAGACCATGT
CTGGGACACGCATCAGCTAAGAGTAG
Found at i:13538647 original size:55 final size:55
Alignment explanation
Indices: 13538521--13538647 Score: 148
Period size: 55 Copynumber: 2.3 Consensus size: 55
13538511 TAAACTTTTT
*
13538521 AGTCAGTGTTGTACACGGGTAGGCCACACGGGCGTGTGCCATGGCCGTGTCTTAA
1 AGTCAGTGTTGTACACGGGTAGGCCACACGGACGTGTGCCATGGCCGTGTCTTAA
* ** * * * *
13538576 AGTCAGTATCATACACGGGTA-GCTCACACGGATGTGTGCCATGGCCTTGTGTTGA
1 AGTCAGTGTTGTACACGGGTAGGC-CACACGGACGTGTGCCATGGCCGTGTCTTAA
* *
13538631 AGTCAATGTTGCACACG
1 AGTCAGTGTTGTACACG
13538648 AGCTAAGGAC
Statistics
Matches: 58, Mismatches: 13, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
54 2 0.03
55 56 0.97
ACGTcount: A:0.21, C:0.23, G:0.31, T:0.25
Consensus pattern (55 bp):
AGTCAGTGTTGTACACGGGTAGGCCACACGGACGTGTGCCATGGCCGTGTCTTAA
Found at i:13541575 original size:18 final size:18
Alignment explanation
Indices: 13541536--13541577 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
13541526 GCATCATTTG
*
13541536 ATCACATATACATAACAT
1 ATCACATATACATAACAC
*
13541554 ATCACATATGA-ATAATAC
1 ATCACATAT-ACATAACAC
13541572 ATCACA
1 ATCACA
13541578 ACCTATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.50, C:0.21, G:0.02, T:0.26
Consensus pattern (18 bp):
ATCACATATACATAACAC
Found at i:13542915 original size:20 final size:20
Alignment explanation
Indices: 13542887--13542930 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
13542877 AGCAATGTGC
* *
13542887 TCATAAAATTTTAGAATTTT
1 TCATAAAATTTTACAACTTT
*
13542907 TCATCAAATTTTACAACTTT
1 TCATAAAATTTTACAACTTT
13542927 TCAT
1 TCAT
13542931 TTTAGTCCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.36, C:0.14, G:0.02, T:0.48
Consensus pattern (20 bp):
TCATAAAATTTTACAACTTT
Found at i:13551094 original size:50 final size:50
Alignment explanation
Indices: 13551035--13551135 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
13551025 TGATTACTCT
13551035 TGGCTAGGGGAAGGTCAATGAGCAATTGTTACTCTTTTCGCGATTTAATC
1 TGGCTAGGGGAAGGTCAATGAGCAATTGTTACTCTTTTCGCGATTTAATC
13551085 TGGCTAGGGGAAGGTCAATGAGCAATTGTTACTCTTTTCGCGATTTAATC
1 TGGCTAGGGGAAGGTCAATGAGCAATTGTTACTCTTTTCGCGATTTAATC
13551135 T
1 T
13551136 TTAAGTGTCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.35
Consensus pattern (50 bp):
TGGCTAGGGGAAGGTCAATGAGCAATTGTTACTCTTTTCGCGATTTAATC
Found at i:13567099 original size:30 final size:26
Alignment explanation
Indices: 13567037--13567092 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
13567027 CAATAAAGTA
13567037 GAGGAGCCTATGCTAACTATAGAGAG
1 GAGGAGCCTATGCTAACTATAGAGAG
13567063 GAGGAGCCTATGCTAACTATAGAGAG
1 GAGGAGCCTATGCTAACTATAGAGAG
13567089 GAGG
1 GAGG
13567093 GTGGAGCTCG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.14, G:0.34, T:0.18
Consensus pattern (26 bp):
GAGGAGCCTATGCTAACTATAGAGAG
Found at i:13572394 original size:40 final size:40
Alignment explanation
Indices: 13572335--13572503 Score: 173
Period size: 40 Copynumber: 4.2 Consensus size: 40
13572325 CGGGACTTTA
* * *
13572335 CCCGGATATCACGATTTGCACAAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* *
13572375 CCCGGATTTAACAACTTGCACGAATGCCTTCGGGTCTTAG
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * * * *
13572415 CCCGGATATAGCTACTAGCACAATTGCCTTCGGGTCTTAA
1 CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
* * *
13572455 CCCGGATAT-A-AA-TTTCAGCATAATTGTCTTCGGGGCTTAG
1 CCCGGATATAACAACTTGCA-CA-AA-TGCCTTCGGGTCTTAG
13572495 CCCGGATAT
1 CCCGGATAT
13572504 CATTCAATTT
Statistics
Matches: 106, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
37 3 0.03
38 3 0.03
39 1 0.01
40 99 0.93
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (40 bp):
CCCGGATATAACAACTTGCACAAATGCCTTCGGGTCTTAG
Found at i:13576493 original size:50 final size:50
Alignment explanation
Indices: 13576438--13576535 Score: 187
Period size: 50 Copynumber: 2.0 Consensus size: 50
13576428 CTATATTACA
13576438 AGTGGTACAGGTATGTACACGGAACTCATGTAAAGTGAATTTGATATACG
1 AGTGGTACAGGTATGTACACGGAACTCATGTAAAGTGAATTTGATATACG
*
13576488 AGTGGTACAGGTATGTACACGGAACTCATGTGAAGTGAATTTGATATA
1 AGTGGTACAGGTATGTACACGGAACTCATGTAAAGTGAATTTGATATA
13576536 TGGTGAATTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.29
Consensus pattern (50 bp):
AGTGGTACAGGTATGTACACGGAACTCATGTAAAGTGAATTTGATATACG
Found at i:13584885 original size:6 final size:6
Alignment explanation
Indices: 13584846--13584902 Score: 53
Period size: 6 Copynumber: 9.7 Consensus size: 6
13584836 TATGATATAT
* *** * *
13584846 TTTTAA TTTT-A TTTTAA ATTTAA AGATAA CTTTAG TTTTAA TTTTAA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
13584893 TTTTAA TTTT
1 TTTTAA TTTT
13584903 TTTATTGTGA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
5 5 0.12
6 36 0.88
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (6 bp):
TTTTAA
Found at i:13589400 original size:41 final size:41
Alignment explanation
Indices: 13589355--13589437 Score: 139
Period size: 41 Copynumber: 2.0 Consensus size: 41
13589345 TCCAAGATAG
* *
13589355 TTTCTGGAATGGGTTAAACCCAATCGGCAGAGGCGGTAGGA
1 TTTCTGGAATGGGTTAAACCCAATCGGCAGAAGCAGTAGGA
*
13589396 TTTCTGGAATGGGTTAAACCCAATTGGCAGAAGCAGTAGGA
1 TTTCTGGAATGGGTTAAACCCAATCGGCAGAAGCAGTAGGA
13589437 T
1 T
13589438 ACTGGCAGAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (41 bp):
TTTCTGGAATGGGTTAAACCCAATCGGCAGAAGCAGTAGGA
Found at i:13590926 original size:18 final size:18
Alignment explanation
Indices: 13590903--13590945 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
13590893 AGTAAAGAGC
* *
13590903 AATTTTGACTAGCATTAT
1 AATTTTGACCAGCAGTAT
*
13590921 AATTTTGACCAGTAGTAT
1 AATTTTGACCAGCAGTAT
13590939 AATTTTG
1 AATTTTG
13590946 GCCAAAATCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (18 bp):
AATTTTGACCAGCAGTAT
Found at i:13599242 original size:31 final size:31
Alignment explanation
Indices: 13599185--13599254 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
13599175 TTCAAAATGG
* *
13599185 TCAAATAAGGGTCAGATATTTATGAAAGTGC
1 TCAAATAAGGGTCAGAAATTTATGAAAGTAC
*
13599216 TCAAATAAGGGTCA-AAACTTTTTGAAAGTAC
1 TCAAATAAGGGTCAGAAA-TTTATGAAAGTAC
*
13599247 TTAAATAA
1 TCAAATAA
13599255 AGGCTTTTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 2 0.06
31 32 0.94
ACGTcount: A:0.43, C:0.10, G:0.17, T:0.30
Consensus pattern (31 bp):
TCAAATAAGGGTCAGAAATTTATGAAAGTAC
Found at i:13599311 original size:41 final size:41
Alignment explanation
Indices: 13599254--13599335 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
13599244 TACTTAAATA
*
13599254 AAGGCTTTTCAAATGTCGTATATTAGGTCTAAAACTATGTT
1 AAGGCTTCTCAAATGTCGTATATTAGGTCTAAAACTATGTT
13599295 AAGGCTTCTCAAATGTCGTATATTAGGTCTAAAACTATGTT
1 AAGGCTTCTCAAATGTCGTATATTAGGTCTAAAACTATGTT
13599336 TTATTATTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (41 bp):
AAGGCTTCTCAAATGTCGTATATTAGGTCTAAAACTATGTT
Found at i:13603121 original size:16 final size:17
Alignment explanation
Indices: 13603100--13603132 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13603090 ATAAATCCTA
*
13603100 TATTCATTTAT-AAATT
1 TATTCACTTATGAAATT
13603116 TATTCACTTATGAAATT
1 TATTCACTTATGAAATT
13603133 CAGAGTGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (17 bp):
TATTCACTTATGAAATT
Found at i:13605623 original size:53 final size:53
Alignment explanation
Indices: 13605535--13605685 Score: 205
Period size: 53 Copynumber: 2.8 Consensus size: 53
13605525 CTTACACGGT
* * *
13605535 TCACATATCATACCGAAGCCATATCCAAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
13605590 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
13605643 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
13605686 GCGCACTTAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.01
53 80 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:13613116 original size:53 final size:53
Alignment explanation
Indices: 13613035--13613185 Score: 214
Period size: 53 Copynumber: 2.8 Consensus size: 53
13613025 CTTACACGGT
* *
13613035 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
13613090 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
** *
13613143 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
13613186 GTGCACTTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.01
53 81 0.91
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:13618191 original size:14 final size:14
Alignment explanation
Indices: 13618172--13618202 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
13618162 AACATATATA
13618172 ACAACCTATTCAAT
1 ACAACCTATTCAAT
13618186 ACAACCTATTCAAT
1 ACAACCTATTCAAT
13618200 ACA
1 ACA
13618203 TTTTTATCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (14 bp):
ACAACCTATTCAAT
Found at i:13621013 original size:11 final size:9
Alignment explanation
Indices: 13620931--13621022 Score: 53
Period size: 10 Copynumber: 9.4 Consensus size: 9
13620921 AAATAAAGAG
13620931 TATAAAAATT
1 TATAAAAA-T
*
13620941 TATATAAAT
1 TATAAAAAT
13620950 TAATAGAAAA-
1 T-ATA-AAAAT
*
13620960 TAGAAAAAT
1 TATAAAAAT
*
13620969 ATAGAAAAAT
1 -TATAAAAAT
*
13620979 ATTTAAAAAATT
1 -TAT-AAAAA-T
13620991 TATAAAAA-
1 TATAAAAAT
13620999 TATAGAAACAT
1 TATA-AAA-AT
13621010 TATAAAAAT
1 TATAAAAAT
13621019 TATA
1 TATA
13621023 TATATATATA
Statistics
Matches: 67, Mismatches: 6, Indels: 19
0.73 0.07 0.21
Matches are distributed among these distances:
8 8 0.12
9 13 0.19
10 31 0.46
11 14 0.21
12 1 0.01
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (9 bp):
TATAAAAAT
Found at i:13622755 original size:31 final size:31
Alignment explanation
Indices: 13622717--13622775 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
13622707 ACTGAGCCGA
13622717 AGCCTTTTCATAAATCATATCACTGGGCCAG
1 AGCCTTTTCATAAATCATATCACTGGGCCAG
*
13622748 AGCCTTTTCATAAATCATTTCACTGGGC
1 AGCCTTTTCATAAATCATATCACTGGGC
13622776 TGAAGCCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.32
Consensus pattern (31 bp):
AGCCTTTTCATAAATCATATCACTGGGCCAG
Found at i:13622783 original size:31 final size:30
Alignment explanation
Indices: 13622714--13622785 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 30
13622704 GTTACTGAGC
13622714 CGAAGCCTTTTCATAAATCATATCACTGGG
1 CGAAGCCTTTTCATAAATCATATCACTGGG
* *
13622744 CCAGAGCCTTTTCATAAATCATTTCACTGGG
1 CGA-AGCCTTTTCATAAATCATATCACTGGG
13622775 CTGAAGCCTTT
1 C-GAAGCCTTT
13622786 ACTGTAAACG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 2 0.05
31 34 0.92
32 1 0.03
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (30 bp):
CGAAGCCTTTTCATAAATCATATCACTGGG
Found at i:13622860 original size:42 final size:42
Alignment explanation
Indices: 13622813--13622900 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
13622803 CTATAGGCCT
* ** *
13622813 ATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
13622855 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
1 ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
13622897 ATTT
1 ATTT
13622901 AGGGAGACTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (42 bp):
ATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCCC
Found at i:13623090 original size:26 final size:26
Alignment explanation
Indices: 13623045--13623189 Score: 212
Period size: 26 Copynumber: 5.8 Consensus size: 26
13623035 CCTCTTTAAT
*
13623045 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
13623070 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
13623096 AACTGGGGCATAAGCCCTTTTCAGT-
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
13623121 -A---GGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAGTA
*
13623143 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAGTA
13623169 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
13623190 GCACTTCCTC
Statistics
Matches: 108, Mismatches: 6, Indels: 11
0.86 0.05 0.09
Matches are distributed among these distances:
21 19 0.18
23 1 0.01
24 1 0.01
25 10 0.09
26 77 0.71
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAGTA
Found at i:13623131 original size:47 final size:47
Alignment explanation
Indices: 13623075--13623164 Score: 180
Period size: 47 Copynumber: 1.9 Consensus size: 47
13623065 CGGTAAACTG
13623075 GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAGTA
1 GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAGTA
13623122 GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTC
1 GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTC
13623165 GGTAAACTGG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (47 bp):
GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAGTA
Found at i:13623137 original size:73 final size:72
Alignment explanation
Indices: 13623050--13623189 Score: 235
Period size: 73 Copynumber: 1.9 Consensus size: 72
13623040 TTAATAACTG
**
13623050 GGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTT
1 GGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTT
13623115 TTCAGTA
66 TTCAGTA
**
13623122 GGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCT
1 GGGCA-AAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCT
13623187 TTT
65 TTT
13623190 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 5 0.08
73 58 0.92
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (72 bp):
GGGCAAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTT
TTCAGTA
Found at i:13624061 original size:27 final size:27
Alignment explanation
Indices: 13623993--13624050 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
13623983 TATTCGTCAT
* *
13623993 TTTACCATACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACAGTCTC
13624020 TTTACCCTACAGGGGCTTTACAGTCTC
1 TTTACCCTACAGGGGCTTTACAGTCTC
13624047 TTTA
1 TTTA
13624051 TCTAATAGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACAGTCTC
Found at i:13624136 original size:27 final size:27
Alignment explanation
Indices: 13624106--13624362 Score: 101
Period size: 27 Copynumber: 9.4 Consensus size: 27
13624096 GTAAATCTAC
13624106 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
13624133 AAACTAATGGTATTTCCA-TAATTTT-T
1 AAACCAAGGGTATTT-CAGTAATTTTGT
* * *
13624159 AGAAAGTCAAGGGTATTTCTGTAACTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* ** **
13624189 AAATC-AGAGGTATTTTGGTAATTTTAC
1 AAACCAAG-GGTATTTCAGTAATTTTGT
*** * ***
13624216 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTGT
* **
13624243 AAACCAAAGGTATTTTGGTAA-TTT-T
1 AAACCAAGGGTATTTCAGTAATTTTGT
* ** ***
13624268 ACAACCTAGGGGTATTTTGGTAATTTCAC
1 A-AACC-AAGGGTATTTCAGTAATTTTGT
* *
13624297 AAACCAATGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* * *** *
13624324 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
13624351 AAATCAAGGGTA
1 AAACCAAGGGTA
13624363 AAATAGTAAT
Statistics
Matches: 177, Mismatches: 41, Indels: 24
0.73 0.17 0.10
Matches are distributed among these distances:
25 1 0.01
26 9 0.05
27 133 0.75
28 17 0.10
29 16 0.09
30 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:13624211 original size:56 final size:52
Alignment explanation
Indices: 13624103--13624271 Score: 135
Period size: 54 Copynumber: 3.1 Consensus size: 52
13624093 TTGGTAAATC
* ***
13624103 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACTAATGGTATTTCCATAATTTT
1 TACAAATCAAGGGTATTTCAGTAA-TTTGTAAAC-AA-GGTATTTTGGTAATTTT
* *
13624158 TAGAAAGTCAAGGGTATTTCTGTAACTTTGTAAATCAGAGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAA-TTTGTAAA-CA-AGGTATTTTGGTAATTTT
** * **
13624213 TACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAAGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCAGTAATTT-GTAAA-C-AAGGTATTTTGGTAATTTT
13624267 TACAA
1 TACAA
13624272 CCTAGGGGTA
Statistics
Matches: 95, Mismatches: 14, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
53 3 0.03
54 41 0.43
55 14 0.15
56 35 0.37
57 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.17, T:0.38
Consensus pattern (52 bp):
TACAAATCAAGGGTATTTCAGTAATTTGTAAACAAGGTATTTTGGTAATTTT
Found at i:13624254 original size:54 final size:54
Alignment explanation
Indices: 13624196--13624335 Score: 192
Period size: 54 Copynumber: 2.6 Consensus size: 54
13624186 TGTAAATCAG
13624196 AGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
1 AGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
** *
13624250 AGGTATTTTGGTAATTTTACAACCT-AGGGGTATTTTGGTAATTTCACAAACCAA
1 AGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAA
* * ** *
13624304 TGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGTATTTTGGTAATTTTACAAATTGAGGGTA
13624336 AAACAGTAAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 72 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
AGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAA
Found at i:13624345 original size:54 final size:55
Alignment explanation
Indices: 13624287--13624446 Score: 146
Period size: 54 Copynumber: 3.0 Consensus size: 55
13624277 GGGTATTTTG
* *** * *
13624287 GTAATTTC-ACAAACCAATGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
** * *
13624341 GTAA-TTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
** * * ** *
13624395 GTAA-TTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATTGAGGGTAAAA
1 GTAATTTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA
13624447 TGGTAATTCT
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 3 0.03
54 88 0.97
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.30
Consensus pattern (55 bp):
GTAATTTCTACAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:13624363 original size:27 final size:27
Alignment explanation
Indices: 13624314--13624550 Score: 298
Period size: 27 Copynumber: 8.8 Consensus size: 27
13624304 TGGTATTTTA
* *
13624314 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAACG
* **
13624341 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
13624368 GTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
13624395 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* * *
13624422 GTAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAACG
13624449 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAACG
* *
13624476 ATAATTAC-GTAAATCGGGGGTAAAACG
1 GTAATT-CTGTAAATCGAGGGTAAAACG
* * * * *
13624503 GTAATTATATAAATTGGGGGTAAAGCG
1 GTAATTCTGTAAATCGAGGGTAAAACG
*
13624530 GTAATTATGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
13624551 CTTTGGTAAT
Statistics
Matches: 185, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.03
27 179 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAACG
Found at i:13624372 original size:81 final size:82
Alignment explanation
Indices: 13624287--13624516 Score: 209
Period size: 81 Copynumber: 2.8 Consensus size: 82
13624277 GGGTATTTTG
* **** * *
13624287 GTAATTTC-ACAAACCAATGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGT
1 GTAATTTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
13624351 AAATCAAGGGTAAAATA
66 AAATCAAGGGTAAAATA
* * * * *
13624368 GTAA-TTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTAT
1 GTAATTTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
** *
13624432 AAATTGAGGGTAAAATG
66 AAATCAAGGGTAAAATA
** * * * * *
13624449 GTAA-TTCTGTAAATCGAGGGTAAAAC-GATAATTAC-GTAAATCGGGGGTAAAACGGTAATTAT
1 GTAATTTCTACAAACCAAGGGTAAAACAG-TAATT-CTGTAAATCGAGGGTAAAACAGTAATTCT
13624511 ATAAAT
64 ATAAAT
13624517 TGGGGGTAAA
Statistics
Matches: 128, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
80 4 0.03
81 123 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (82 bp):
GTAATTTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTAT
AAATCAAGGGTAAAATA
Found at i:13624652 original size:28 final size:27
Alignment explanation
Indices: 13624556--13624654 Score: 103
Period size: 27 Copynumber: 3.6 Consensus size: 27
13624546 GGGTACTTTG
* *
13624556 GTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTTTACAA-ACTAAGGGTATTTCA
*
13624583 GTAATTTTACAAA-TCCAGGGTATTTCA
1 GTAATTTTACAAACT-AAGGGTATTTCA
* *
13624610 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGGGTATTTCA
*
13624637 GTAATTTTAGTAAACTAA
1 GTAATTTTA-CAAACTAA
13624655 AGTATTCTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
26 1 0.02
27 51 0.85
28 8 0.13
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.38
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGGGTATTTCA
Found at i:13626919 original size:31 final size:31
Alignment explanation
Indices: 13626881--13626958 Score: 115
Period size: 31 Copynumber: 2.5 Consensus size: 31
13626871 TTTAACGGTT
13626881 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
13626912 ACTGGGCC-AGAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGA-AGCCTTTTCATAAATCATATC
*
13626943 ACT-GGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
13626959 ACTGTAAACG
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
30 11 0.26
31 32 0.74
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:13627029 original size:42 final size:42
Alignment explanation
Indices: 13626982--13627073 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
13626972 TGGCCTATAG
* **
13626982 GCCCATTTCAATATCACATGTAATGTCAAT-AGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGA-ATGTATGCAA
13627024 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
13627066 GCCCATTT
1 GCCCATTT
13627074 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.13, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:13627263 original size:26 final size:26
Alignment explanation
Indices: 13627218--13627336 Score: 169
Period size: 26 Copynumber: 4.8 Consensus size: 26
13627208 CCTCTTTAAT
13627218 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
13627243 AACTGGGGCATAAGCCCTTTTCGGT-
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
13627268 -A---GGGCATAAACCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
13627290 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
13627316 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
13627337 GCACTTCCTC
Statistics
Matches: 82, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
21 17 0.21
23 1 0.01
24 1 0.01
25 10 0.12
26 53 0.65
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:13627292 original size:47 final size:46
Alignment explanation
Indices: 13627223--13627315 Score: 150
Period size: 47 Copynumber: 2.0 Consensus size: 46
13627213 TTAATAACTG
* **
13627223 GGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCGGTA
1 GGGCAAAACCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
13627269 GGGCATAAACCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
1 GGGCA-AAACCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
13627316 AACTGGGGCA
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
46 5 0.12
47 38 0.88
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (46 bp):
GGGCAAAACCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTA
Found at i:13628170 original size:27 final size:27
Alignment explanation
Indices: 13628135--13628226 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
13628125 GGGCATATTC
* * * *
13628135 GTCATTTTACCATATAGGGG-TATTATG
1 GTCACTTTACCCTACAGGGGCT-TTACG
13628162 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCACTTTACCCTACAGGGGCTTTACG
* *
13628189 GTCTCTTTACCCTACAGGGGCTTTACA
1 GTCACTTTACCCTACAGGGGCTTTACG
*
13628216 GTCTCTTTACC
1 GTCACTTTACC
13628227 TAATAGGGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 57 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTACG
Found at i:13628235 original size:27 final size:27
Alignment explanation
Indices: 13628166--13628226 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
13628156 ATTATGGTCA
*
13628166 CTTTACCCTACAGGGGCTTTACGGTCT
1 CTTTACCCTACAGGGGCTTTACAGTCT
13628193 CTTTACCCTACAGGGGCTTTACAGTCT
1 CTTTACCCTACAGGGGCTTTACAGTCT
13628220 CTTTACC
1 CTTTACC
13628227 TAATAGGGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.34
Consensus pattern (27 bp):
CTTTACCCTACAGGGGCTTTACAGTCT
Found at i:13628309 original size:27 final size:27
Alignment explanation
Indices: 13628279--13628561 Score: 147
Period size: 27 Copynumber: 10.4 Consensus size: 27
13628269 GTAAATCTAC
*
13628279 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
13628306 AAACCAATAGTATTTCCA-TAATTTTTAG
1 AAACCAAGGGTATTT-CAGTAA-TTTTAT
* * * *
13628334 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* ** *
13628362 AAATC-AGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
13628388 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
** *
13628415 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
13628442 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
13628469 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *** * *
13628496 AAATCGAGGGTAAAACAGTAATTCTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *** *
13628523 AAATCAAGGGTAAAACAGTAATTCTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
13628550 AAATCGAGGGTA
1 AAACCAAGGGTA
13628562 AAACGGTAAT
Statistics
Matches: 210, Mismatches: 41, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
26 20 0.10
27 162 0.77
28 16 0.08
29 12 0.06
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:13628428 original size:54 final size:54
Alignment explanation
Indices: 13628367--13628507 Score: 203
Period size: 54 Copynumber: 2.6 Consensus size: 54
13628357 TTTGTAAATC
13628367 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
* * *
13628421 AGGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCA
* ** *
13628475 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 AGGGTATTTTGGTAATTTTACAAATTGAGGGTA
13628508 AAACAGTAAT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
53 1 0.01
54 75 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.38
Consensus pattern (54 bp):
AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
Found at i:13628517 original size:54 final size:54
Alignment explanation
Indices: 13628367--13628572 Score: 171
Period size: 54 Copynumber: 3.8 Consensus size: 54
13628357 TTTGTAAATC
* * *** *
13628367 AGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCA
1 AGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCA
* * ****
13628421 AGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTTAGTAATTTTACAAATCGA-GGGTAAAACGGTAATTTTACAAACCA
** * * ** *
13628475 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCA
**** * *
13628529 AGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGGTAATT
1 AGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATT
13628573 CTGTAAATTG
Statistics
Matches: 126, Mismatches: 24, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
53 1 0.01
54 123 0.98
55 2 0.02
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.34
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAATCGAGGGTAAAACGGTAATTTTACAAACCA
Found at i:13628544 original size:81 final size:81
Alignment explanation
Indices: 13628459--13628687 Score: 225
Period size: 81 Copynumber: 2.9 Consensus size: 81
13628449 GGGTATTTTG
* **** *
13628459 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA-GTAATTCTGT
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA-AGGTAATTCTGT
13628523 AAATCAAGGGTAAAACA
65 AAATCAAGGGTAAAACA
* * * * *
13628540 GTAATTCTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAAAGGTAATTCTGTA
1 GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAAGGTAATTCTGTA
* *
13628605 AATCGAGGGTAAAACG
66 AATCAAGGGTAAAACA
* * * * * *
13628621 GTAA-T-TAGTAAATCAAGGGTAAAAC-GATAATTATGTAAATCG-GGGTAAAACGGCAATTATG
1 GTAATTCTA-CAAACCAAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAAAGGTAATTCTG
13628682 TAAATC
64 TAAATC
13628688 GGGGTACTTT
Statistics
Matches: 126, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
79 25 0.20
80 31 0.25
81 70 0.56
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.28
Consensus pattern (81 bp):
GTAATTCTACAAACCAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAAGGTAATTCTGTA
AATCAAGGGTAAAACA
Found at i:13628562 original size:27 final size:27
Alignment explanation
Indices: 13628485--13628693 Score: 257
Period size: 27 Copynumber: 7.9 Consensus size: 27
13628475 AGGGTATTTT
*
13628485 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
13628512 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
13628539 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
13628566 GGTAATTCTGTAAATTGAGGGTAAAA-
1 AGTAATTCTGTAAATCGAGGGTAAAAC
13628592 AGGTAATTCTGTAAATCGAGGGTAAAAC
1 A-GTAATTCTGTAAATCGAGGGTAAAAC
* * *
13628620 GGTAATT-AGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
13628646 -GATAATTATGTAAATCG-GGGTAAAAC
1 AG-TAATTCTGTAAATCGAGGGTAAAAC
* * *
13628672 GGCAATTATGTAAATCG-GGGTA
1 AGTAATTCTGTAAATCGAGGGTA
13628694 CTTTGGTAAT
Statistics
Matches: 162, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
25 1 0.01
26 50 0.31
27 111 0.69
ACGTcount: A:0.41, C:0.09, G:0.23, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:13628729 original size:27 final size:27
Alignment explanation
Indices: 13628699--13628788 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
13628689 GGGTACTTTG
* * * *
13628699 GTAATATTACAAGTCGAAGGTGTTTCA
1 GTAATTTTACAAATCCAAGGTATTTCA
*
13628726 GTAATTTTACAAATCCAGGGTATTTCA
1 GTAATTTTACAAATCCAAGGTATTTCA
* * *
13628753 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCCAA-GGTATTTCA
13628780 GTAATTTTA
1 GTAATTTTA
13628789 GTAAACTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.04
27 50 0.96
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAATCCAAGGTATTTCA
Found at i:13628795 original size:28 final size:27
Alignment explanation
Indices: 13628721--13628797 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 27
13628711 GTCGAAGGTG
*
13628721 TTTCAGTAATTTTACAAA-TCCAGGGTA
1 TTTCAGTAATTTTACAAACT-AAGGGTA
*
13628748 TTTCAGTATTTTTACAAACTAAGGGTA
1 TTTCAGTAATTTTACAAACTAAGGGTA
* *
13628775 TTTCGGTAATTTTAGTAAACTAA
1 TTTCAGTAATTTTA-CAAACTAA
13628798 AGTATTCTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 35 0.81
28 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (27 bp):
TTTCAGTAATTTTACAAACTAAGGGTA
Found at i:13632370 original size:32 final size:32
Alignment explanation
Indices: 13632328--13632421 Score: 97
Period size: 32 Copynumber: 3.0 Consensus size: 32
13632318 GGCAAAAATC
*
13632328 TGAACAGGAAAGCCTTTGTGGTAAGTACTATA
1 TGAAAAGGAAAGCCTTTGTGGTAAGTACTATA
* * *
13632360 TGAAAAGGAAAGCTTTTGTGGCAA-AACT-T-
1 TGAAAAGGAAAGCCTTTGTGGTAAGTACTATA
* *
13632389 TGGACAA-GAAAGCCTTTATGGTAAGTACTATA
1 T-GAAAAGGAAAGCCTTTGTGGTAAGTACTATA
13632421 T
1 T
13632422 TTTATGGCAA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
29 15 0.31
30 8 0.16
31 4 0.08
32 22 0.45
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (32 bp):
TGAAAAGGAAAGCCTTTGTGGTAAGTACTATA
Found at i:13635217 original size:51 final size:51
Alignment explanation
Indices: 13635157--13635260 Score: 199
Period size: 51 Copynumber: 2.0 Consensus size: 51
13635147 ATTTCAAAAA
13635157 TAAGTGATAAAATGATATCTAAGGCAAACAAAAGTGACTATTTAGATAGTT
1 TAAGTGATAAAATGATATCTAAGGCAAACAAAAGTGACTATTTAGATAGTT
*
13635208 TAAGTGATAAAATGATATCTAAGGCAAACAAAAGTGACTATTTTGATAGTT
1 TAAGTGATAAAATGATATCTAAGGCAAACAAAAGTGACTATTTAGATAGTT
13635259 TA
1 TA
13635261 CCCAATAAAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (51 bp):
TAAGTGATAAAATGATATCTAAGGCAAACAAAAGTGACTATTTAGATAGTT
Found at i:13641303 original size:2 final size:2
Alignment explanation
Indices: 13641296--13641348 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
13641286 ATTTTGGACT
13641296 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13641338 TA TA TA TA TA T
1 TA TA TA TA TA T
13641349 CTTAGAGACT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13642900 original size:32 final size:32
Alignment explanation
Indices: 13642859--13642920 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
13642849 TTATGCCTTA
*
13642859 AATTAAAAATAATTTTTATATAA-AGGGAGCTT
1 AATTAAAAATAACTTTTAT-TAAGAGGGAGCTT
* *
13642891 AATTGAAAATGACTTTTATTAAGAGGGAGC
1 AATTAAAAATAACTTTTATTAAGAGGGAGC
13642921 AATCTATTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 3 0.12
32 23 0.88
ACGTcount: A:0.44, C:0.05, G:0.18, T:0.34
Consensus pattern (32 bp):
AATTAAAAATAACTTTTATTAAGAGGGAGCTT
Found at i:13643286 original size:20 final size:20
Alignment explanation
Indices: 13643261--13643310 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
13643251 TATCGATCTA
*
13643261 GTATCGATACT-TTTCTTAAG
1 GTATCGATA-TATTTCCTAAG
*
13643281 GTATCGTTATATTTCCTAAG
1 GTATCGATATATTTCCTAAG
13643301 GTATCGATAT
1 GTATCGATAT
13643311 TCCTACTCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 1 0.04
20 25 0.96
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (20 bp):
GTATCGATATATTTCCTAAG
Found at i:13643315 original size:17 final size:19
Alignment explanation
Indices: 13643272--13643315 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
13643262 TATCGATACT
*
13643272 TTTCTTAAGGTATCGTTATA
1 TTTCCTAAGGTATCG-TATA
13643292 TTTCCTAAGGTATCG-ATA
1 TTTCCTAAGGTATCGTATA
13643310 -TTCCTA
1 TTTCCTA
13643316 CTCCAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 6 0.26
18 3 0.13
20 14 0.61
ACGTcount: A:0.25, C:0.16, G:0.14, T:0.45
Consensus pattern (19 bp):
TTTCCTAAGGTATCGTATA
Found at i:13646867 original size:16 final size:16
Alignment explanation
Indices: 13646846--13646876 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13646836 AAACTCTAAA
13646846 ATATTTATAATATTTT
1 ATATTTATAATATTTT
*
13646862 ATATTTATCATATTT
1 ATATTTATAATATTT
13646877 ATCATAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATTTATAATATTTT
Found at i:13646879 original size:9 final size:9
Alignment explanation
Indices: 13646846--13646882 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
13646836 AAACTCTAAA
*
13646846 ATATTTATA
1 ATATTTATC
13646855 ATATTT-T-
1 ATATTTATC
13646862 ATATTTATC
1 ATATTTATC
13646871 ATATTTATC
1 ATATTTATC
13646880 ATA
1 ATA
13646883 ATATTTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 6 0.23
8 2 0.08
9 18 0.69
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (9 bp):
ATATTTATC
Found at i:13651849 original size:68 final size:68
Alignment explanation
Indices: 13651740--13651876 Score: 274
Period size: 68 Copynumber: 2.0 Consensus size: 68
13651730 CCTAAAAGTA
13651740 AGAAACTTGGAGAAATTAGTATGCAAACATCACCACCACGAGTTCCTGTAGCAACTTAGGAAAGG
1 AGAAACTTGGAGAAATTAGTATGCAAACATCACCACCACGAGTTCCTGTAGCAACTTAGGAAAGG
13651805 AGC
66 AGC
13651808 AGAAACTTGGAGAAATTAGTATGCAAACATCACCACCACGAGTTCCTGTAGCAACTTAGGAAAGG
1 AGAAACTTGGAGAAATTAGTATGCAAACATCACCACCACGAGTTCCTGTAGCAACTTAGGAAAGG
13651873 AGC
66 AGC
13651876 A
1 A
13651877 TTTTAGATAG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.39, C:0.20, G:0.22, T:0.19
Consensus pattern (68 bp):
AGAAACTTGGAGAAATTAGTATGCAAACATCACCACCACGAGTTCCTGTAGCAACTTAGGAAAGG
AGC
Found at i:13662607 original size:22 final size:22
Alignment explanation
Indices: 13662568--13662626 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
13662558 GTTTTAAGAA
*
13662568 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
13662589 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
13662611 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
13662627 GATTTATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.47
22 11 0.32
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:13662643 original size:26 final size:24
Alignment explanation
Indices: 13662597--13662656 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 24
13662587 ATTTGTTTTA
*
13662597 ATATTTATTTTTATGTTTTTAAAT
1 ATATTTATTTTTATATTTTTAAAT
13662621 ATATTTGATTTATTATATTTTTAAAT
1 ATATTT-ATTT-TTATATTTTTAAAT
* *
13662647 TTTTTTATTT
1 ATATTTATTT
13662657 AATAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 8 0.26
26 17 0.55
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (24 bp):
ATATTTATTTTTATATTTTTAAAT
Found at i:13666587 original size:16 final size:16
Alignment explanation
Indices: 13666558--13666597 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
13666548 AAATTGATAT
*
13666558 GAGAAAGAGTGAGAGA
1 GAGAAAGAGAGAGAGA
* *
13666574 GAGAAGGAGAGAGATA
1 GAGAAAGAGAGAGAGA
13666590 GAGAAAGA
1 GAGAAAGA
13666598 TTTGGGCTTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.53, C:0.00, G:0.42, T:0.05
Consensus pattern (16 bp):
GAGAAAGAGAGAGAGA
Found at i:13668145 original size:32 final size:33
Alignment explanation
Indices: 13668109--13668181 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 33
13668099 AAGTTTTTAT
13668109 AAAATATTTTCAGA-AAAT-T-TGCCAAACACCAG
1 AAAATATTTT-AGAGAAATCTAT-CCAAACACCAG
* *
13668141 AAAATATTTTATAGAAATCTATCCAAACACTAG
1 AAAATATTTTAGAGAAATCTATCCAAACACCAG
13668174 AAAATATT
1 AAAATATT
13668182 AACATTTACA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
31 2 0.06
32 14 0.39
33 19 0.53
34 1 0.03
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (33 bp):
AAAATATTTTAGAGAAATCTATCCAAACACCAG
Found at i:13671660 original size:21 final size:21
Alignment explanation
Indices: 13671636--13671676 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
13671626 TCCAATATGG
*
13671636 CTAGTTAACAAGCCATATCAA
1 CTAGTTAACAAGCCACATCAA
*
13671657 CTAGTTAACAGGCCACATCA
1 CTAGTTAACAAGCCACATCA
13671677 CATATCCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.39, C:0.27, G:0.12, T:0.22
Consensus pattern (21 bp):
CTAGTTAACAAGCCACATCAA
Found at i:13672299 original size:19 final size:19
Alignment explanation
Indices: 13672259--13672299 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
13672249 AAGGGTAAAT
* *
13672259 AAATTAGAAATGAAATAGA
1 AAATTAGAAATGAAAGAAA
*
13672278 AAATTTGAAATGAAAGAAA
1 AAATTAGAAATGAAAGAAA
13672297 AAA
1 AAA
13672300 ATTACTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.15, T:0.20
Consensus pattern (19 bp):
AAATTAGAAATGAAAGAAA
Found at i:13673121 original size:20 final size:21
Alignment explanation
Indices: 13673086--13673124 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
13673076 ACCATTTTCA
*
13673086 AATCGAGTTTTGAAAAATGGG
1 AATCGAGTTTTAAAAAATGGG
13673107 AATCGA-TTTTAAAAAATG
1 AATCGAGTTTTAAAAAATG
13673125 AAAACGGGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (21 bp):
AATCGAGTTTTAAAAAATGGG
Found at i:13674447 original size:18 final size:18
Alignment explanation
Indices: 13674359--13674462 Score: 63
Period size: 18 Copynumber: 5.8 Consensus size: 18
13674349 ATGTAATATA
*
13674359 AATATATAAGAAT-T-AT
1 AATATATAAAAATATAAT
* * *
13674375 AATAGATATAATATAAAAT
1 AATATATA-AAAATATAAT
* * *
13674394 AACATGTAAATATATATAT
1 AATATATAAAAATATA-AT
*
13674413 AAT-TAATAAATATATAAT
1 AATAT-ATAAAAATATAAT
*
13674431 -ATATGTGAAAAATATAAT
1 AATATAT-AAAAATATAAT
13674449 AATATATAAAAATA
1 AATATATAAAAATA
13674463 GTGATAATTT
Statistics
Matches: 67, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
16 7 0.10
17 6 0.09
18 28 0.42
19 26 0.39
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.35
Consensus pattern (18 bp):
AATATATAAAAATATAAT
Found at i:13678428 original size:21 final size:20
Alignment explanation
Indices: 13678404--13678442 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
13678394 TAGCTTAGGC
*
13678404 ACACATTCGTGTGAGACAGAG
1 ACACAGTCGTGTGA-ACAGAG
*
13678425 ACACGGTCGTGTGAACAG
1 ACACAGTCGTGTGAACAG
13678443 GCCGTGTAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.18
Consensus pattern (20 bp):
ACACAGTCGTGTGAACAGAG
Found at i:13679160 original size:23 final size:23
Alignment explanation
Indices: 13679108--13679173 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
13679098 ATTTTCAAAA
13679108 AAGAACAAAAAAGAAAGAAAAAGC
1 AAGAAC-AAAAAGAAAGAAAAAGC
* *
13679132 AA-AACAAAAGGAAATGAAAGAG-
1 AAGAACAAAAAGAAA-GAAAAAGC
**
13679154 AAGAACATGAA-AAAGAAAAA
1 AAGAACAAAAAGAAAGAAAAA
13679174 AGGAAAAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
21 5 0.15
22 13 0.38
23 14 0.41
24 2 0.06
ACGTcount: A:0.73, C:0.06, G:0.18, T:0.03
Consensus pattern (23 bp):
AAGAACAAAAAGAAAGAAAAAGC
Found at i:13679181 original size:14 final size:15
Alignment explanation
Indices: 13679115--13679189 Score: 53
Period size: 15 Copynumber: 4.9 Consensus size: 15
13679105 AAAAAGAACA
*
13679115 AAAAAGAAAGAAAAAGC
1 AAAAAG-AAG-AAAAGG
* * *
13679132 AAAACAAAAGGAAATG
1 AAAA-AGAAGAAAAGG
* * *
13679148 AAAGAGAAGAACATG
1 AAAAAGAAGAAAAGG
13679163 AAAAAGAA-AAAAGG
1 AAAAAGAAGAAAAGG
13679177 AAAAAGAAGAAAA
1 AAAAAGAAGAAAA
13679190 AAATTCAAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
14 12 0.27
15 19 0.42
16 6 0.13
17 7 0.16
18 1 0.02
ACGTcount: A:0.73, C:0.04, G:0.20, T:0.03
Consensus pattern (15 bp):
AAAAAGAAGAAAAGG
Found at i:13683347 original size:40 final size:40
Alignment explanation
Indices: 13683283--13683525 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
13683273 CGGAATACAA
* ** * * *
13683283 CGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGCC
1 CGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
*
13683323 CGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGCC
1 CGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
13683363 CGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
1 CGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
13683403 CGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
1 CGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
* * * * *
13683443 CGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAACC
1 CGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGCC
** * * *
13683483 CGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGCC
1 CGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGCC
13683523 CGG
1 CGG
13683526 GTATCATTCA
Statistics
Matches: 181, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 180 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGCC
Found at i:13683680 original size:64 final size:64
Alignment explanation
Indices: 13683612--13683800 Score: 142
Period size: 64 Copynumber: 3.0 Consensus size: 64
13683602 GAACACAAAC
13683612 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
13683676 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
13683733 AC
63 AT
13683735 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
13683799 AT
1 AT
13683801 GTCAATAATC
Statistics
Matches: 80, Mismatches: 34, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 26 0.32
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:13683713 original size:123 final size:123
Alignment explanation
Indices: 13683494--13683832 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
13683484 GGATATAATT
* * * * * * *
13683494 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
13683559 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
13683617 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13683682 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
13683740 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13683805 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
13683833 CACATAATTC
Statistics
Matches: 207, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
123 207 1.00
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:13690761 original size:40 final size:40
Alignment explanation
Indices: 13690696--13690939 Score: 303
Period size: 40 Copynumber: 6.1 Consensus size: 40
13690686 CGGAATACAA
* ** * * *
13690696 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
13690736 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
13690776 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
13690816 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
13690856 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
13690896 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
13690936 CCGG
1 CCGG
13690940 GTATCATTCA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 181 0.99
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:13691094 original size:64 final size:64
Alignment explanation
Indices: 13691026--13691215 Score: 144
Period size: 64 Copynumber: 3.0 Consensus size: 64
13691016 GAACACAAAC
13691026 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
13691090 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
13691147 AC
63 AT
13691149 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
13691213 ATA
1 ATA
13691216 AATAATCATT
Statistics
Matches: 81, Mismatches: 34, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 27 0.33
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.28
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:13691127 original size:123 final size:122
Alignment explanation
Indices: 13690908--13691354 Score: 706
Period size: 123 Copynumber: 3.8 Consensus size: 122
13690898 GGATATAATT
* * * * * * *
13690908 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13690973 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTC-AACACAAACATATC
13691031 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13691096 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTC-AACACAAACATATC
13691154 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATA--A
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13691217 ATAATCATTACACATCCATATTTCA-TTTC---ACTAA---TCAACAC--A-ATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAACACAAACATATC
*
13691264 ACTAGCATAATTGCCTTC-GGACTTAGCCCGGGTACCATTCAAATACTCAT-CACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13691327 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
13691355 CACATAATTC
Statistics
Matches: 312, Mismatches: 9, Indels: 18
0.92 0.03 0.05
Matches are distributed among these distances:
108 9 0.03
109 32 0.10
110 49 0.16
111 3 0.01
113 5 0.02
114 2 0.01
117 5 0.02
120 4 0.01
121 26 0.08
123 177 0.57
ACGTcount: A:0.34, C:0.26, G:0.10, T:0.30
Consensus pattern (122 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAACACAAACATATC
Found at i:13694910 original size:40 final size:40
Alignment explanation
Indices: 13694865--13694994 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
13694855 CGGAATACAA
13694865 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
13694905 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
13694945 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
13694985 CCGGATATAA
1 CCGGATATAA
13694995 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:13695009 original size:40 final size:40
Alignment explanation
Indices: 13694865--13695031 Score: 153
Period size: 40 Copynumber: 4.2 Consensus size: 40
13694855 CGGAATACAA
* **
13694865 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
13694905 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
13694945 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * *
13694985 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
13695024 CCGGATAT
1 CCGGATAT
13695032 CATTCAATTT
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
39 15 0.14
40 89 0.86
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:13700145 original size:40 final size:40
Alignment explanation
Indices: 13700080--13700321 Score: 285
Period size: 40 Copynumber: 6.1 Consensus size: 40
13700070 CGGAATACAA
* ** * * *
13700080 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
13700120 CCGGATATAACGACTTGCACAAATGCCTT--GGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
13700158 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
13700198 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
13700238 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
13700278 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
13700318 CCGG
1 CCGG
13700322 GTATCATTCA
Statistics
Matches: 178, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
38 36 0.20
40 141 0.79
41 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:13700476 original size:64 final size:64
Alignment explanation
Indices: 13700408--13700596 Score: 142
Period size: 64 Copynumber: 3.0 Consensus size: 64
13700398 GAACACAAAC
13700408 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
* * * * *** * *** * ** * *
13700472 ATATCAATA--ATCATTACACATCCATATTTCATTTTC-GTTA-C--T--AAGGCTCAAACACAA
1 ATATCACTAGCATAATTGC-CTTCGGGACTT-A-GCCCGGGTACCATTCAAATACTCATACACAC
*
13700529 AC
63 AT
13700531 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
1 ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
13700595 AT
1 AT
13700597 TCAATAATCA
Statistics
Matches: 80, Mismatches: 34, Indels: 22
0.59 0.25 0.16
Matches are distributed among these distances:
58 1 0.01
59 24 0.30
60 7 0.09
61 7 0.09
62 7 0.09
63 7 0.09
64 26 0.32
65 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.11, T:0.29
Consensus pattern (64 bp):
ATATCACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACAT
Found at i:13700509 original size:123 final size:123
Alignment explanation
Indices: 13700290--13700627 Score: 597
Period size: 123 Copynumber: 2.8 Consensus size: 123
13700280 GGATATAATT
* * * * * * *
13700290 ACTAGCATAAATGTCTTCGGGACTTAGCCCGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
13700355 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
13700413 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13700478 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
13700536 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATAT-TCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13700600 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
13700628 CACATAATTC
Statistics
Matches: 207, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
122 31 0.15
123 176 0.85
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:13702651 original size:14 final size:14
Alignment explanation
Indices: 13702632--13702660 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13702622 TGCTGTAAGC
13702632 GAATTCAATCAAAG
1 GAATTCAATCAAAG
13702646 GAATTCAATCAAAG
1 GAATTCAATCAAAG
13702660 G
1 G
13702661 CAAATACCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (14 bp):
GAATTCAATCAAAG
Found at i:13707559 original size:40 final size:40
Alignment explanation
Indices: 13707494--13707734 Score: 297
Period size: 40 Copynumber: 6.0 Consensus size: 40
13707484 CGGAATACAA
* ** * * *
13707494 CCGGATATAACCACACGCACGAATGCCCTCGGGTCTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
*
13707534 CCGGATATAACGACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
13707574 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
13707614 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
* * * * *
13707654 CCGGATATAGTC-ACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATA-ACAACTTGCACAAATGCCTTCGGGTATTAGC
** * * *
13707694 CCGGATATAATTACTAGCATAAATGTCTTCGGG-ACTTAGC
1 CCGGATATAACAACTTGCACAAATGCCTTCGGGTA-TTAGC
13707734 C
1 C
13707735 TGGGTATCAT
Statistics
Matches: 179, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
40 178 0.99
41 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAACAACTTGCACAAATGCCTTCGGGTATTAGC
Found at i:13707925 original size:123 final size:123
Alignment explanation
Indices: 13707706--13708043 Score: 579
Period size: 123 Copynumber: 2.8 Consensus size: 123
13707696 GGATATAATT
* * * * * * * *
13707706 ACTAGCATAAATGTCTTCGGGACTTAGCCTGGGTATCATTCAATTGCTCATGCACACATAAATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
*
13707771 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCGAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
13707829 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13707894 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
66 ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
*
13707952 ACTAGCATAATTGCCTTCGGGACTTAGCCC-GGTACCATTCAAATACTCATACACACATATGTCA
1 ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
13708016 ATAATCATTACACATCCATATTTCATTT
66 ATAATCATTACACATCCATATTTCATTT
13708044 CACATAATTC
Statistics
Matches: 205, Mismatches: 10, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
122 61 0.30
123 144 0.70
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.30
Consensus pattern (123 bp):
ACTAGCATAATTGCCTTCGGGACTTAGCCCGGGTACCATTCAAATACTCATACACACATATATCA
ATAATCATTACACATCCATATTTCATTTTCGTTACTAAGGCTCAAACACAAACATATC
Found at i:13709445 original size:19 final size:19
Alignment explanation
Indices: 13709409--13709445 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13709399 TAATTAGGCT
* *
13709409 TTAATTAGGTGAATTTAGC
1 TTAATTAGGAGAAATTAGC
13709428 TTAATTAGGAGAAATTAG
1 TTAATTAGGAGAAATTAG
13709446 AAAAAAGGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.22, T:0.38
Consensus pattern (19 bp):
TTAATTAGGAGAAATTAGC
Found at i:13710072 original size:7 final size:7
Alignment explanation
Indices: 13710019--13710099 Score: 65
Period size: 7 Copynumber: 11.0 Consensus size: 7
13710009 TTAAGTTTAA
13710019 TATATAT
1 TATATAT
13710026 TATATTAT
1 TATA-TAT
* *
13710034 TAAATAA
1 TATATAT
*
13710041 TAAATA-
1 TATATAT
*
13710047 TATTTAT
1 TATATAT
*
13710054 TAGTTTTAT
1 TA--TATAT
13710063 TATATAT
1 TATATAT
13710070 TATATAT
1 TATATAT
13710077 TATATTAT
1 TATA-TAT
13710085 TATTATAT
1 TA-TATAT
13710093 TATATAT
1 TATATAT
13710100 AGTAAAGTAA
Statistics
Matches: 63, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
6 4 0.06
7 34 0.54
8 16 0.25
9 9 0.14
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (7 bp):
TATATAT
Found at i:13710073 original size:25 final size:24
Alignment explanation
Indices: 13710021--13710097 Score: 74
Period size: 23 Copynumber: 3.4 Consensus size: 24
13710011 AAGTTTAATA
* * * *
13710021 TATATTATATTATTAAATAATAAA
1 TATATTATATTATTATATTATTAT
*
13710045 TATATT-TATTAGT-T-TTATTA-
1 TATATTATATTATTATATTATTAT
13710065 TATATTATA-TATTATATTATTAT
1 TATATTATATTATTATATTATTAT
13710088 TATATTATAT
1 TATATTATAT
13710098 ATAGTAAAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
20 9 0.21
21 7 0.16
22 6 0.14
23 15 0.35
24 6 0.14
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (24 bp):
TATATTATATTATTATATTATTAT
Found at i:13710990 original size:70 final size:74
Alignment explanation
Indices: 13710907--13711082 Score: 191
Period size: 70 Copynumber: 2.4 Consensus size: 74
13710897 ATGTGAACAA
* *
13710907 ATTGGAAATTAAAAGTGATTTGAATT-AAGT-AATTGAATT-ATGCAT-TATGTGAATATTTGAA
1 ATTGGAAACTAAAAGTGATTTGAATTGAA-TAAATTGAATTAATGAATATATGTGAATATTTGAA
13710968 A-GTATATTG
65 ATGTATATTG
*
13710977 ATTGGAAACTAAAAGTGATTTGAATTGAATCAAATTGAATTGAATGAATAAAATATGTGAGTATT
1 ATTGGAAACTAAAAGTGATTTGAATTGAAT-AAATTGAATT-AATGAAT---ATATGTGAATATT
13711042 TGAAATGTATATTG
61 TGAAATGTATATTG
* * **
13711056 ATTGAAAAGTAATTGGTGATTTGAATT
1 ATTGGAAACTAA-AAGTGATTTGAATT
13711083 TGATTGGAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
70 26 0.30
71 2 0.02
72 9 0.10
74 5 0.06
78 16 0.18
79 18 0.20
80 12 0.14
ACGTcount: A:0.41, C:0.02, G:0.19, T:0.38
Consensus pattern (74 bp):
ATTGGAAACTAAAAGTGATTTGAATTGAATAAATTGAATTAATGAATATATGTGAATATTTGAAA
TGTATATTG
Found at i:13713039 original size:26 final size:26
Alignment explanation
Indices: 13713003--13713062 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
13712993 GAAGCTCCGG
13713003 AAAGCCATTAATCAGGAAGCTCACAA
1 AAAGCCATTAATCAGGAAGCTCACAA
* *
13713029 AAAGCCTTTAATCGGGAAGCTCACAA
1 AAAGCCATTAATCAGGAAGCTCACAA
*
13713055 AGAGCCAT
1 AAAGCCAT
13713063 ATATCGAGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.42, C:0.23, G:0.18, T:0.17
Consensus pattern (26 bp):
AAAGCCATTAATCAGGAAGCTCACAA
Found at i:13722006 original size:21 final size:21
Alignment explanation
Indices: 13721981--13722023 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
13721971 ATATATTATT
13721981 CATAAGTCCCTTATATGAGCC
1 CATAAGTCCCTTATATGAGCC
13722002 CATAAGTCCCTTATATGAGCC
1 CATAAGTCCCTTATATGAGCC
13722023 C
1 C
13722024 TCGAGGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (21 bp):
CATAAGTCCCTTATATGAGCC
Found at i:13727606 original size:2 final size:2
Alignment explanation
Indices: 13727599--13727633 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
13727589 CTAAAATTTG
13727599 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13727634 CACTTTAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:13735452 original size:335 final size:336
Alignment explanation
Indices: 13734833--13735509 Score: 1284
Period size: 335 Copynumber: 2.0 Consensus size: 336
13734823 TTAAGAAACA
13734833 TGATCTATGTGTATGGGATGAGGAATGCCAAAAGACCTTCGACAAGGCTAAACTCCATTTGTATA
1 TGATCTA-GTGTATGGGATGAGGAATGCCAAAAGACCTTCGACAAGGCTAAACTCCATTTGTATA
*
13734898 ATGCCCCAGTGTTGTTGCCACGTAGCCAAGATAAATAATTGATACTGTACTTGGAAGTATTTTGA
65 ATGCCCCAGTGTTGTTGCCACGTAGCCAAGATAAATAACTGATACTGTACTTGGAAGTATTTTGA
13734963 AATGTGATGAGATGCATACTTGGCCAATATGATGAGTCAGAGAGGAAAGAAAGAGCAATCTATTA
130 AATGTGATGAGATGCATACTTGGCCAATATGATGAGTCAGAGAGGAAAGAAAGAGCAATCTATTA
13735028 CCTCAGCAAGAAGTCCACCGAATGCGAGACAAGATATTCACCAATCGAGAAGTTGTGTTGCGCCT
195 CCTCAGCAAGAAGTCCACCGAATGCGAGACAAGATATTCACCAATCGAGAAGTTGTGTTGCGCCT
*
13735093 TCGATTATTTTGAAAATGAACCCTCTAAAGTTCATGATGGATTTGACCGCATTTGAATGGAAGAA
260 TCGATTATTTTGAAAATGAACCCTCTAAAGTTCATGATGGATTCGACCGCATTTGAATGGAAGAA
13735158 TGGCTCGATAAC
325 TGGCTCGATAAC
*
13735170 TGATCTA-TGTATGGGATGAGGAATGCCAGAAGACCTTCGACAAGGCTAAACTCCATTTGTATAA
1 TGATCTAGTGTATGGGATGAGGAATGCCAAAAGACCTTCGACAAGGCTAAACTCCATTTGTATAA
13735234 TGCCCCAGTGTTGTTGCCACGTAGCCAAGATAAATAACTGATACTGTACTTGGAAGTATTTTGAA
66 TGCCCCAGTGTTGTTGCCACGTAGCCAAGATAAATAACTGATACTGTACTTGGAAGTATTTTGAA
* *
13735299 ATGTTATGGGATGCATACTTGGCCAATATGATGAGTCAGAGAGGAAAGAAAGAGCAATCTATTAC
131 ATGTGATGAGATGCATACTTGGCCAATATGATGAGTCAGAGAGGAAAGAAAGAGCAATCTATTAC
13735364 CTCAGCAAGAAGTCCACCGAATGCGAGACAAGATATTCACCAATCGAGAAGTTGTGTTGCGCCTT
196 CTCAGCAAGAAGTCCACCGAATGCGAGACAAGATATTCACCAATCGAGAAGTTGTGTTGCGCCTT
13735429 CGATTATTTTGAAAATGAACCCTCTAAAGTTCATGATGGATTCGACCGCATTTGAATGGAAGAAT
261 CGATTATTTTGAAAATGAACCCTCTAAAGTTCATGATGGATTCGACCGCATTTGAATGGAAGAAT
*
13735494 GGCTTGATAAC
326 GGCTCGATAAC
13735505 TGATC
1 TGATC
13735510 CTGCTCTCCA
Statistics
Matches: 334, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
335 327 0.98
337 7 0.02
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (336 bp):
TGATCTAGTGTATGGGATGAGGAATGCCAAAAGACCTTCGACAAGGCTAAACTCCATTTGTATAA
TGCCCCAGTGTTGTTGCCACGTAGCCAAGATAAATAACTGATACTGTACTTGGAAGTATTTTGAA
ATGTGATGAGATGCATACTTGGCCAATATGATGAGTCAGAGAGGAAAGAAAGAGCAATCTATTAC
CTCAGCAAGAAGTCCACCGAATGCGAGACAAGATATTCACCAATCGAGAAGTTGTGTTGCGCCTT
CGATTATTTTGAAAATGAACCCTCTAAAGTTCATGATGGATTCGACCGCATTTGAATGGAAGAAT
GGCTCGATAAC
Found at i:13735863 original size:26 final size:26
Alignment explanation
Indices: 13735834--13735941 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
13735824 TGATACAAAT
*
13735834 TGATAATGGGTTAGGTAAATGTTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13735860 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13735886 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13735912 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13735938 TGAT
1 TGAT
13735942 TGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13737455 original size:26 final size:26
Alignment explanation
Indices: 13737426--13737478 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
13737416 TTTACAGTTT
13737426 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
13737452 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
13737478 T
1 T
13737479 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:13737665 original size:13 final size:13
Alignment explanation
Indices: 13737647--13737671 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13737637 GTGTTGGGCT
13737647 TGGGTTGAGCTAG
1 TGGGTTGAGCTAG
13737660 TGGGTTGAGCTA
1 TGGGTTGAGCTA
13737672 TTCCCACATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.44, T:0.32
Consensus pattern (13 bp):
TGGGTTGAGCTAG
Found at i:13741581 original size:94 final size:94
Alignment explanation
Indices: 13741311--13742612 Score: 1098
Period size: 94 Copynumber: 13.9 Consensus size: 94
13741301 TCAGTGAAAC
* * * * ** *
13741311 ACAAATCCTATACCCCTAAAGTTGTAGTGGGTCCGATTGAATTTACCATAATGGATCTTATCTCC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* * *
13741376 TTGAAGTTGCAGTGGAGCATATTTAAGCT
66 CTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * *
13741405 ACAAATCCTATA-CCCTGAAGTTGTAGTGGGTCAAATTAAATCTACCATAGCGAATCTTATCTCC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* * * *
13741469 TTCAAGTTGTAGTAGAGCAGATTGAAGCT
66 CTGAAGTTGCAGTGGAGCAGATTGAAGCT
* *
13741498 ACAAATCCTATACCCCTGAAGTTGCAGTAGGTCAGATTGAATCTACCATAGCGAATCTTATCTCT
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* * *
13741563 CTAAAATTGCAGTGGAGCAAATTGAAGCT
66 CTGAAGTTGCAGTGGAGCAGATTGAAGCT
* * * * * *
13741592 ACAAATCATATACCCTTGAAGTTTCAATGGTTC-GAATTGAATCTACTATAGCGAATCTTATCTC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGAATCTACCATAGCGAATCTTATCTC
* *
13741656 CCTGAAGTTGCAGTGGAGTAGGTTGAAGCT
65 CCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* *
13741686 ACAAAACCTATACCCCTGAAGTTGCAGTGGGTC-GAATTGAATCTTCCATAGCGAATCTTATCTC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGAATCTACCATAGCGAATCTTATCTC
*
13741750 CCTGAAGTTG-A---GAGCATATTGAAGCT
65 CCTGAAGTTGCAGTGGAGCAGATTGAAGCT
13741776 ACAAATCCTATA-CCCTGAAGTTGCAGTGGGTC-GAATTGAATCTACCATAGCGAATCTTATCTC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGAATCTACCATAGCGAATCTTATCTC
*
13741839 CCTGAAGTTGCAGTGGAGTAGGCATATTGAAGCT
65 CCTGAAGTTGCAGT-G-G-A-GCAGATTGAAGCT
* * *
13741873 ACAAATCCTATA-CCCTGAAGTTGCAGTGGGTCAGAATGAATCTACCATAGCAAATCTTATCTTC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* *
13741937 CTGAAGTTTCAGTGGAGTAGGATTGAAGCT
66 CTGAAGTTGCAGTGGAGCA-GATTGAAGCT
* *
13741967 ACAAATCCTATA-CCCTGAAGTTGCAGTGGGTCAAACTGAATCTACCATAGCGAATCTTATCTCC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
* * *
13742031 CTGAAGTTGTAGTGGAGTTGCAG-TGGGTCAAACT
66 CTGAAGTTGCAGTGGA---GCAGAT---TGAAGCT
* * *
13742065 GAAGCCACAATCTTAT-CTCCCTGAAGTTGTAGTGGAG-CAGATTGAA---GCC--A-C-AA-CT
1 --A--CA-AATCCTATAC-CCCTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGCGAATCT
* * * *
13742120 TATAC-CCCTGAAGTTGTAATGG-GTCCGATTGAATCT
59 TAT-CTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGCT
* *
13742156 ACCATAGCTAATCTTAT-CTCCCTGAAGTTGCAGTGGAGT-AGATTGAAGCTA-C--A---AATC
1 A-C--A---AATCCTATAC-CCCTGAAGTTGCAGTGG-GTCAGATTGAATCTACCATAGCGAATC
* ** * * *
13742213 CTATAGCCCTAAAGTTACAGTGGAGTAGATTGAAGCT
58 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCT
* ** * * * * *
13742250 TCAAATCCTATACCCCTGAAGTTATATTGGGTCGGATTAAAGT-TACCGTAGTGAATCTTATCTC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAA-TCTACCATAGCGAATCTTATCTC
* * * * *
13742314 TCTAAAGTTACAGTGGA-CAAAATTGAAACT
65 CCTGAAGTTGCAGTGGAGC-AGATTGAAGCT
* *
13742344 ACAAATCCTATACCCCTAAAGTTGCAGTGGGTCAGATTGAATCTA-CAGTGGCGAATCTTATCTC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCA-TAGCGAATCTTATCTC
* ** * *
13742408 TCTGAAGTTATAGTGGAGTAAGA-TGAAGCA
65 CCTGAAGTTGCAGTGGAG-CAGATTGAAGCT
* * * * *
13742438 ACAAATTCTATACCCCTGAAGTTGTAGTGGGTCAGATTAAAACTACAAT-GACGAATCTTATCTC
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAG-CGAATCTTATCTC
* * * * *
13742502 TCTAAAGTTGTAATAGAGCAAGA-TGAAGCT
65 CCTGAAGTTGCAGTGGAGC-AGATTGAAGCT
* * * * * * * * *
13742532 ACAAGTCCTATACCTCTAAAGTTGCAGTGGGTCGGAATGGAA-CTACAATGGTGAATCTTATCTA
1 ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAG-ATTGAATCTACCATAGCGAATCTTATCTC
*
13742596 CCTGAAATTGCAGTGGA
65 CCTGAAGTTGCAGTGGA
13742613 TGAGATTAAA
Statistics
Matches: 1004, Mismatches: 145, Indels: 118
0.79 0.11 0.09
Matches are distributed among these distances:
87 2 0.00
88 31 0.03
89 63 0.06
90 25 0.02
91 7 0.01
92 37 0.04
93 92 0.09
94 578 0.58
95 12 0.01
96 24 0.02
97 89 0.09
98 7 0.01
99 1 0.00
100 1 0.00
101 2 0.00
102 2 0.00
103 7 0.01
104 23 0.02
105 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (94 bp):
ACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAGATTGAATCTACCATAGCGAATCTTATCTCC
CTGAAGTTGCAGTGGAGCAGATTGAAGCT
Done.