Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 64 of 325
Found at i:17184020 original size:19 final size:19
Alignment explanation
Indices: 17183996--17184032 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
17183986 CCACAAACAA
17183996 TATGTTCATTTGGGTTGAC
1 TATGTTCATTTGGGTTGAC
17184015 TATGTTCATTTGGGTTGA
1 TATGTTCATTTGGGTTGA
17184033 TTATTTCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.08, G:0.27, T:0.49
Consensus pattern (19 bp):
TATGTTCATTTGGGTTGAC
Found at i:17185349 original size:20 final size:20
Alignment explanation
Indices: 17185324--17185415 Score: 69
Period size: 20 Copynumber: 4.6 Consensus size: 20
17185314 CCACCAATAA
*
17185324 TGCAAATAAACTGTCAGTAG
1 TGCAAATAAACTGCCAGTAG
* * * * *
17185344 TGCAAACAAGCTCCCAATAT
1 TGCAAATAAACTGCCAGTAG
* * *
17185364 TGCAGATAAATTTCCAGTAG
1 TGCAAATAAACTGCCAGTAG
*
17185384 TGCAAA-AACACTGCCAGTAT
1 TGCAAATAA-ACTGCCAGTAG
*
17185404 TGCAGATAAACT
1 TGCAAATAAACT
17185416 ACCAATACTT
Statistics
Matches: 52, Mismatches: 18, Indels: 4
0.70 0.24 0.05
Matches are distributed among these distances:
19 2 0.04
20 48 0.92
21 2 0.04
ACGTcount: A:0.39, C:0.21, G:0.16, T:0.24
Consensus pattern (20 bp):
TGCAAATAAACTGCCAGTAG
Found at i:17185405 original size:40 final size:40
Alignment explanation
Indices: 17185338--17185413 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
17185328 AATAAACTGT
*
17185338 CAGTAGTGCAAACAAGCTCCCAATATTGCAGATAAATTTC
1 CAGTAGTGCAAACAAACTCCCAATATTGCAGATAAATTTC
* *
17185378 CAGTAGTGCAAA-AACACTGCCAGTATTGCAGATAAA
1 CAGTAGTGCAAACAA-ACTCCCAATATTGCAGATAAA
17185414 CTACCAATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 2 0.06
40 30 0.94
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.22
Consensus pattern (40 bp):
CAGTAGTGCAAACAAACTCCCAATATTGCAGATAAATTTC
Found at i:17192467 original size:20 final size:20
Alignment explanation
Indices: 17192434--17192473 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
17192424 GGAATAAATC
* * *
17192434 GGAAACATTTGAAACATTAA
1 GGAAAAATTGGAAAAATTAA
17192454 GGAAAAATTGGAAAAATTAA
1 GGAAAAATTGGAAAAATTAA
17192474 ACTGTAGGGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.55, C:0.05, G:0.17, T:0.23
Consensus pattern (20 bp):
GGAAAAATTGGAAAAATTAA
Found at i:17195204 original size:16 final size:17
Alignment explanation
Indices: 17195170--17195215 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
17195160 ATGAATAGAT
17195170 AAAAGCCGAAATG-TCG
1 AAAAGCCGAAATGCTCG
*
17195186 AAATGCCGAAATGCT-G
1 AAAAGCCGAAATGCTCG
*
17195202 AAAAGTCGAAATGC
1 AAAAGCCGAAATGC
17195216 CACAAAGCCG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 25 0.96
17 1 0.04
ACGTcount: A:0.43, C:0.17, G:0.24, T:0.15
Consensus pattern (17 bp):
AAAAGCCGAAATGCTCG
Found at i:17195489 original size:29 final size:29
Alignment explanation
Indices: 17195452--17195553 Score: 134
Period size: 29 Copynumber: 3.6 Consensus size: 29
17195442 TGAGTGTGAC
*
17195452 TGGGCCTAACGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
17195481 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
17195510 TGGGCCTAATGGGCCATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATGTGATT
* *
17195538 TAGGCTTAATGGGCCA
1 TGGGCCTAATGGGCCA
17195554 GATACAGGTA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 15 0.23
29 49 0.77
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTGATT
Found at i:17195524 original size:58 final size:57
Alignment explanation
Indices: 17195452--17195562 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
17195442 TGAGTGTGAC
* * *
17195452 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTAGGCCTAATGGGCCAGATACAGGTGATT
* * *
17195510 TGGGCCTAATGGGCCATATGAATATGATTAGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGT
17195563 ATGTGAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTAGGCCTAATGGGCCAGATACAGGTGATT
Found at i:17214412 original size:14 final size:14
Alignment explanation
Indices: 17214388--17214434 Score: 60
Period size: 13 Copynumber: 3.4 Consensus size: 14
17214378 TTTTAACTGA
17214388 TTTTGGGTTATTTGG
1 TTTT-GGTTATTTGG
*
17214403 TTTTGGTTA-TTGT
1 TTTTGGTTATTTGG
17214416 TTTTGGTTATTTGG
1 TTTTGGTTATTTGG
*
17214430 CTTTG
1 TTTTG
17214435 CTGGGTTTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 12 0.43
14 12 0.43
15 4 0.14
ACGTcount: A:0.06, C:0.02, G:0.28, T:0.64
Consensus pattern (14 bp):
TTTTGGTTATTTGG
Found at i:17216854 original size:5 final size:5
Alignment explanation
Indices: 17216844--17216875 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
17216834 TTGTGTGTTC
17216844 TTTAT TTTAT TTTA- TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
17216876 TTCACAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:17216863 original size:14 final size:14
Alignment explanation
Indices: 17216844--17216874 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
17216834 TTGTGTGTTC
17216844 TTTATTTTATTTTA
1 TTTATTTTATTTTA
17216858 TTTATTTTATTTTA
1 TTTATTTTATTTTA
17216872 TTT
1 TTT
17216875 TTTCACAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:17219090 original size:284 final size:284
Alignment explanation
Indices: 17218580--17219149 Score: 1140
Period size: 284 Copynumber: 2.0 Consensus size: 284
17218570 AAATAGAAGG
17218580 GAAAACAGATAAAATACCTCCACACAGACAATGGCTTAGAGTTTTGTTCTGATGAGTTTAATAGA
1 GAAAACAGATAAAATACCTCCACACAGACAATGGCTTAGAGTTTTGTTCTGATGAGTTTAATAGA
17218645 TTGTGCAAGTCAAAAGGGATCATGAGACACTTGACAGTTCGTCATACTCCACAGTAAAACGGTGT
66 TTGTGCAAGTCAAAAGGGATCATGAGACACTTGACAGTTCGTCATACTCCACAGTAAAACGGTGT
17218710 TGCAGAACGAATGAACAGAACGATCATGAAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTAC
131 TGCAGAACGAATGAACAGAACGATCATGAAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTAC
17218775 CGAAGGCATTTTGGGCAGAAGCGGCCTCTACTGCATGTTTTTTAATCAATCGATCTCCATCCGTT
196 CGAAGGCATTTTGGGCAGAAGCGGCCTCTACTGCATGTTTTTTAATCAATCGATCTCCATCCGTT
17218840 GCCATTGAGAAAAAGACTCCACAA
261 GCCATTGAGAAAAAGACTCCACAA
17218864 GAAAACAGATAAAATACCTCCACACAGACAATGGCTTAGAGTTTTGTTCTGATGAGTTTAATAGA
1 GAAAACAGATAAAATACCTCCACACAGACAATGGCTTAGAGTTTTGTTCTGATGAGTTTAATAGA
17218929 TTGTGCAAGTCAAAAGGGATCATGAGACACTTGACAGTTCGTCATACTCCACAGTAAAACGGTGT
66 TTGTGCAAGTCAAAAGGGATCATGAGACACTTGACAGTTCGTCATACTCCACAGTAAAACGGTGT
17218994 TGCAGAACGAATGAACAGAACGATCATGAAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTAC
131 TGCAGAACGAATGAACAGAACGATCATGAAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTAC
17219059 CGAAGGCATTTTGGGCAGAAGCGGCCTCTACTGCATGTTTTTTAATCAATCGATCTCCATCCGTT
196 CGAAGGCATTTTGGGCAGAAGCGGCCTCTACTGCATGTTTTTTAATCAATCGATCTCCATCCGTT
17219124 GCCATTGAGAAAAAGACTCCACAA
261 GCCATTGAGAAAAAGACTCCACAA
17219148 GA
1 GA
17219150 GGTATGGTCT
Statistics
Matches: 286, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
284 286 1.00
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.26
Consensus pattern (284 bp):
GAAAACAGATAAAATACCTCCACACAGACAATGGCTTAGAGTTTTGTTCTGATGAGTTTAATAGA
TTGTGCAAGTCAAAAGGGATCATGAGACACTTGACAGTTCGTCATACTCCACAGTAAAACGGTGT
TGCAGAACGAATGAACAGAACGATCATGAAGAAGGTTCGATGTATGTTGTCAAATGCCAACTTAC
CGAAGGCATTTTGGGCAGAAGCGGCCTCTACTGCATGTTTTTTAATCAATCGATCTCCATCCGTT
GCCATTGAGAAAAAGACTCCACAA
Found at i:17229910 original size:18 final size:20
Alignment explanation
Indices: 17229873--17229911 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
17229863 CTAACCCTCA
17229873 AAACGTTTTATTTTTCCACC
1 AAACGTTTTATTTTTCCACC
17229893 AAAC-TTTTATTTTT-CACC
1 AAACGTTTTATTTTTCCACC
17229911 A
1 A
17229912 TTTACCCCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 10 0.53
20 4 0.21
ACGTcount: A:0.28, C:0.23, G:0.03, T:0.46
Consensus pattern (20 bp):
AAACGTTTTATTTTTCCACC
Found at i:17231087 original size:19 final size:19
Alignment explanation
Indices: 17231051--17231093 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
17231041 TATTAATTTT
*
17231051 TTATAAAAAAACTAAAAAA
1 TTATAAAAAAAATAAAAAA
17231070 TTATAAAAAAAAATAAAAATA
1 TTAT-AAAAAAAATAAAAA-A
17231091 TTA
1 TTA
17231094 GCAATTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
TTATAAAAAAAATAAAAAA
Found at i:17234331 original size:10 final size:10
Alignment explanation
Indices: 17234318--17234372 Score: 60
Period size: 9 Copynumber: 5.5 Consensus size: 10
17234308 GTTAACAAAA
17234318 TTTTTATAAG
1 TTTTTATAAG
*
17234328 -TTTTACAAG
1 TTTTTATAAG
17234337 TTTTTATAA-
1 TTTTTATAAG
17234346 TTTTTATATAG
1 TTTTTATA-AG
*
17234357 TTTTCTATAAC
1 TTTT-TATAAG
17234368 TTTTT
1 TTTTT
17234373 TATTTTTCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
9 16 0.42
10 9 0.24
11 9 0.24
12 4 0.11
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (10 bp):
TTTTTATAAG
Found at i:17234342 original size:19 final size:20
Alignment explanation
Indices: 17234318--17234371 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
17234308 GTTAACAAAA
*
17234318 TTTTTATAAGTTTTACA-AG
1 TTTTTATAACTTTTACATAG
* *
17234337 TTTTTATAATTTTTATATAG
1 TTTTTATAACTTTTACATAG
17234357 TTTTCTATAACTTTT
1 TTTT-TATAACTTTT
17234372 TTATTTTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 15 0.50
20 6 0.20
21 9 0.30
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.61
Consensus pattern (20 bp):
TTTTTATAACTTTTACATAG
Found at i:17234371 original size:11 final size:9
Alignment explanation
Indices: 17234316--17234388 Score: 58
Period size: 9 Copynumber: 7.6 Consensus size: 9
17234306 TTGTTAACAA
17234316 AATTTTTAT
1 AATTTTTAT
* *
17234325 AAGTTTTAC
1 AATTTTTAT
17234334 AAGTTTTTAT
1 AA-TTTTTAT
17234344 AATTTTTAT
1 AATTTTTAT
17234353 ATAGTTTTCTAT
1 A-A-TTTT-TAT
17234365 AACTTTTT-T
1 AA-TTTTTAT
*
17234374 ATTTTTCTAT
1 AATTTT-TAT
17234384 AATTT
1 AATTT
17234389 CTAAAATTCC
Statistics
Matches: 51, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
8 4 0.08
9 20 0.39
10 14 0.27
11 9 0.18
12 4 0.08
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (9 bp):
AATTTTTAT
Found at i:17234518 original size:30 final size:30
Alignment explanation
Indices: 17234468--17234526 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
17234458 TTCTATTTTT
*
17234468 TTTTATAATTTTCTATAA-TTTCAATAATAG
1 TTTTATAATTTTCTAAAATTTTC-ATAATAG
17234498 TTTTATAAATTTTC-AAAATTTTCATAATA
1 TTTTAT-AATTTTCTAAAATTTTCATAATA
17234527 TATTAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.53
Consensus pattern (30 bp):
TTTTATAATTTTCTAAAATTTTCATAATAG
Found at i:17234569 original size:17 final size:17
Alignment explanation
Indices: 17234549--17234581 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
17234539 TGAAATAATA
17234549 TTTATAATATTTCTATT
1 TTTATAATATTTCTATT
*
17234566 TTTATAGTATTTCTAT
1 TTTATAATATTTCTAT
17234582 AATATTTCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTATAATATTTCTATT
Found at i:17234610 original size:28 final size:29
Alignment explanation
Indices: 17234549--17234620 Score: 89
Period size: 28 Copynumber: 2.6 Consensus size: 29
17234539 TGAAATAATA
*
17234549 TTTATAATATTTCT-ATTTTTATAGTATT
1 TTTATAATATTTCTAATTTTTATAATATT
*
17234577 TCTATAATATTTCTAATTTTCTA-AAT-TT
1 TTTATAATATTTCTAATTTT-TATAATATT
17234605 TTTATAATATTT-TAAT
1 TTTATAATATTTCTAAT
17234621 AATTTTTAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
27 4 0.10
28 26 0.67
29 7 0.18
30 2 0.05
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (29 bp):
TTTATAATATTTCTAATTTTTATAATATT
Found at i:17237055 original size:24 final size:22
Alignment explanation
Indices: 17237016--17237071 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
17237006 GTGGGGGTCA
17237016 ACACGCCCATGTGG-AGG-GGC
1 ACACGCCCATGTGGAAGGAGGC
*
17237036 ACACGCCCGTGTGGAAGGAGGC
1 ACACGCCCATGTGGAAGGAGGC
17237058 ACACGCCCATGTGG
1 ACACGCCCATGTGG
17237072 CCTAGGGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 13 0.41
21 3 0.09
22 16 0.50
ACGTcount: A:0.21, C:0.30, G:0.38, T:0.11
Consensus pattern (22 bp):
ACACGCCCATGTGGAAGGAGGC
Found at i:17237061 original size:22 final size:20
Alignment explanation
Indices: 17237002--17237071 Score: 88
Period size: 20 Copynumber: 3.4 Consensus size: 20
17236992 AATGCCTAGG
*
17237002 CCATGTGG-GGGTCAACACGC
1 CCATGTGGAGGGGC-ACACGC
17237022 CCATGTGGAGGGGCACACGC
1 CCATGTGGAGGGGCACACGC
*
17237042 CCGTGTGGAAGGAGGCACACGC
1 CCATGTGG-AGG-GGCACACGC
17237064 CCATGTGG
1 CCATGTGG
17237072 CCTAGGGACA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
20 21 0.48
21 7 0.16
22 16 0.36
ACGTcount: A:0.20, C:0.29, G:0.39, T:0.13
Consensus pattern (20 bp):
CCATGTGGAGGGGCACACGC
Found at i:17237737 original size:20 final size:20
Alignment explanation
Indices: 17237712--17237772 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 20
17237702 CAGAGAACTG
17237712 TGGGAATGTGTAAAACAATT
1 TGGGAATGTGTAAAACAATT
*** * *
17237732 TGGGAAACAG--AGA-AATG
1 TGGGAATGTGTAAAACAATT
17237749 TGGGAATGTGTAAAACAATT
1 TGGGAATGTGTAAAACAATT
17237769 TGGG
1 TGGG
17237773 TTCCCCTCCT
Statistics
Matches: 28, Mismatches: 10, Indels: 6
0.64 0.23 0.14
Matches are distributed among these distances:
17 10 0.36
18 2 0.07
19 2 0.07
20 14 0.50
ACGTcount: A:0.39, C:0.05, G:0.31, T:0.25
Consensus pattern (20 bp):
TGGGAATGTGTAAAACAATT
Found at i:17237739 original size:37 final size:37
Alignment explanation
Indices: 17237698--17237772 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
17237688 GAGAGAAAAA
*
17237698 GAAACAGAGAACTGTGGGAATGTGTAAAACAATTTGG
1 GAAACAGAGAAATGTGGGAATGTGTAAAACAATTTGG
17237735 GAAACAGAGAAATGTGGGAATGTGTAAAACAATTTGG
1 GAAACAGAGAAATGTGGGAATGTGTAAAACAATTTGG
17237772 G
1 G
17237773 TTCCCCTCCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.07, G:0.31, T:0.21
Consensus pattern (37 bp):
GAAACAGAGAAATGTGGGAATGTGTAAAACAATTTGG
Found at i:17237829 original size:19 final size:19
Alignment explanation
Indices: 17237801--17237844 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
17237791 TCTCTCCTCC
17237801 AACT-AAAATAAAATAATA
1 AACTAAAAATAAAATAATA
17237819 AACTAAAAATAAAATAATA
1 AACTAAAAATAAAATAATA
17237838 AAC-AAAA
1 AACTAAAA
17237845 TTACTATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 8 0.32
19 17 0.68
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.18
Consensus pattern (19 bp):
AACTAAAAATAAAATAATA
Found at i:17240597 original size:19 final size:19
Alignment explanation
Indices: 17240565--17240610 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
17240555 TCTCTCCCCT
17240565 AACTAAAATAAAAAAAATA
1 AACTAAAATAAAAAAAATA
*
17240584 AACTAGAAAT-AAAATAATA
1 AACTA-AAATAAAAAAAATA
17240603 AAC-AAAAT
1 AACTAAAAT
17240611 CTGCTATACT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 4 0.16
18 1 0.04
19 16 0.64
20 4 0.16
ACGTcount: A:0.74, C:0.07, G:0.02, T:0.17
Consensus pattern (19 bp):
AACTAAAATAAAAAAAATA
Found at i:17247167 original size:13 final size:13
Alignment explanation
Indices: 17247149--17247173 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
17247139 AAGGCTATAG
17247149 ATGACGATGACTT
1 ATGACGATGACTT
17247162 ATGACGATGACT
1 ATGACGATGACT
17247174 AGGATTGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (13 bp):
ATGACGATGACTT
Found at i:17248145 original size:2 final size:2
Alignment explanation
Indices: 17248140--17248193 Score: 108
Period size: 2 Copynumber: 27.0 Consensus size: 2
17248130 ACACACAAAC
17248140 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17248182 AT AT AT AT AT AT
1 AT AT AT AT AT AT
17248194 CATTAGTTTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 52 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17251949 original size:2 final size:2
Alignment explanation
Indices: 17251942--17251984 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
17251932 AGTATGGTTT
*
17251942 TC TC TC TC TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
17251984 T
1 T
17251985 ATGTATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:17267398 original size:29 final size:28
Alignment explanation
Indices: 17267366--17267468 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
17267356 GTGACGAGAT
* *
17267366 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
17267395 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
17267424 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
17267453 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
17267469 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:17278188 original size:29 final size:28
Alignment explanation
Indices: 17278156--17278258 Score: 116
Period size: 29 Copynumber: 3.6 Consensus size: 28
17278146 GTGACGAGAT
* *
17278156 TGGCACTGAGTGTGCGAGCTTGTAATGTA
1 TGGCACTAAGTGTGCGAGCTTG-AATATA
* *
17278185 TGGCACTAAGTGTGCGAGTTTGGACTATA
1 TGGCACTAAGTGTGCGAGCTT-GAATATA
* * *
17278214 TGGCACTATGTGTGCGGGCTTGAATCACA
1 TGGCACTAAGTGTGCGAGCTTGAAT-ATA
17278243 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
17278259 TGATTGAGTA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
28 3 0.05
29 58 0.94
30 1 0.02
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (28 bp):
TGGCACTAAGTGTGCGAGCTTGAATATA
Found at i:17283338 original size:46 final size:47
Alignment explanation
Indices: 17283285--17283408 Score: 148
Period size: 46 Copynumber: 2.7 Consensus size: 47
17283275 TATGTGTGCT
* *
17283285 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAACGAGAGCC
** * *
17283331 AGTGTAAGACATGTCTGGGACATGCAT---TAATATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-A-ACGAGAGCC
17283377 AGTGTAAGACATGTCTGGGACATGCATCGGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC
17283409 TCGAGATATA
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
43 4 0.06
46 60 0.94
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTAACGAGAGCC
Found at i:17283533 original size:49 final size:47
Alignment explanation
Indices: 17283285--17283640 Score: 181
Period size: 49 Copynumber: 7.6 Consensus size: 47
17283275 TATGTGTGCT
* * * ** * *
17283285 AGTGTAAGACATGTCTAGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATGATGAAAGCC
* ** ** * * * * *
17283331 AGTGTAAGACATGTCTGGGACAT-GCATTAATATTAAGACGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATGATGAAAGCC
* * * *
17283377 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGA-GATATACAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GATGAT-GA-AAGCC
* * * * ** * *
17283425 AGTGTCAGACCTGTCTGGGACATGGC-GCCAGCTTG-TTCTG--TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGA-CCTGATGATGAAAGCC
* * *
17283469 AGTGTAAGACTTGTCTAGGACATGGCATCGACACTGATGGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGAT-GATGAAAGCC
* * **
17283518 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACCT-GAT-GATGAAAGCC
* * * **
17283567 AGTGTAAGACTTGTCTGGGACATGGCATCAACTTTGATG-TGCTAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTGATGATGAAAGCC
*
17283614 AGTGTAAGACCATGTTTGGGACATGGC
1 AGTGTAAGACC-TGTCTGGGACATGGC
17283641 GTCGGCATCT
Statistics
Matches: 233, Mismatches: 62, Indels: 28
0.72 0.19 0.09
Matches are distributed among these distances:
44 25 0.11
45 4 0.02
46 65 0.28
47 18 0.08
48 44 0.19
49 76 0.33
50 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACCTGATGATGAAAGCC
Found at i:17283534 original size:93 final size:95
Alignment explanation
Indices: 17283425--17283641 Score: 235
Period size: 98 Copynumber: 2.3 Consensus size: 95
17283415 TATACAAGCT
* * * *
17283425 AGTGTCAGACCTGTCTGGGACATGGCGCCAG-CTTG-T-TCTG-TGTCAGTGTAAGACTTGTCTA
1 AGTGTAAGACCTGTCTGGGACATGGCGCCAGCCTCGATATATGAAGTCAGTGTAAGACTTGTCTA
*
17283486 GGACATGGCATCGACACTGATGGATGAGAGCC
66 GGACATGGCATCAACACTGAT-G-TGAGAGCC
** * *
17283518 AGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGATATATGAAAGTTAGTGTAAGACTTGTCT
1 AGTGTAAGACCTGTCTGGGACATGGCGCCAGCCTCGATATATG-AAGTCAGTGTAAGACTTGTCT
* ** **
17283583 GGGACATGGCATCAACTTTGATGTGCTAGCC
65 AGGACATGGCATCAACACTGATGTGAGAGCC
*
17283614 AGTGTAAGACCATGTTTGGGACATGGCG
1 AGTGTAAGACC-TGTCTGGGACATGGCG
17283642 TCGGCATCTT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
93 27 0.26
94 3 0.03
95 1 0.01
96 20 0.20
97 15 0.15
98 36 0.35
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (95 bp):
AGTGTAAGACCTGTCTGGGACATGGCGCCAGCCTCGATATATGAAGTCAGTGTAAGACTTGTCTA
GGACATGGCATCAACACTGATGTGAGAGCC
Found at i:17283592 original size:98 final size:97
Alignment explanation
Indices: 17283469--17283646 Score: 259
Period size: 98 Copynumber: 1.8 Consensus size: 97
17283459 GTTCTGTGTC
*
17283469 AGTGTAAGACTTGTCTAGGACATGGCATCGACACTGATGGATGAGAGCCAGTGTAAGACC-TGTC
1 AGTGTAAGACTTGTCTAGGACATGGCATCAACACTGAT-G-TGAGAGCCAGTGTAAGACCATGTC
17283533 TGGGACATGGCATCGGCCTCGATATATGAAAGTT
64 TGGGACATGGCATCGGCCTCGATATATGAAAGTT
* ** ** *
17283567 AGTGTAAGACTTGTCTGGGACATGGCATCAACTTTGATGTGCTAGCCAGTGTAAGACCATGTTTG
1 AGTGTAAGACTTGTCTAGGACATGGCATCAACACTGATGTGAGAGCCAGTGTAAGACCATGTCTG
*
17283632 GGACATGGCGTCGGC
66 GGACATGGCATCGGC
17283647 ATCTTACCCC
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
96 17 0.24
97 20 0.28
98 34 0.48
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (97 bp):
AGTGTAAGACTTGTCTAGGACATGGCATCAACACTGATGTGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCGGCCTCGATATATGAAAGTT
Found at i:17296399 original size:25 final size:25
Alignment explanation
Indices: 17296371--17296432 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 25
17296361 TTTCTAACTA
* *
17296371 ATCACTAAATTGATAAAATTTTCCT
1 ATCAATAAATTCATAAAATTTTCCT
** *
17296396 ATCAATATTTTCATAAGATTTTCCT
1 ATCAATAAATTCATAAAATTTTCCT
17296421 ATCATATAAATT
1 ATCA-ATAAATT
17296433 TTCAAGCAAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.44
Consensus pattern (25 bp):
ATCAATAAATTCATAAAATTTTCCT
Found at i:17297683 original size:50 final size:50
Alignment explanation
Indices: 17297620--17297749 Score: 145
Period size: 50 Copynumber: 2.6 Consensus size: 50
17297610 CTAGAAAATC
* * * * *
17297620 TTTGTGGCAAATTCTCTGGAAAGTCTTTTTGGTGTATCATTT-GGAAAGCT
1 TTTGTGGCGAATTCTCTAGAAAGTCTTTGTGGCGTACCATTTGGGAAA-CT
* *
17297670 TTTGTGGCGAATTCTTTAGAAAGCCTTTGTGGCGTACCATTTGGGAAACT
1 TTTGTGGCGAATTCTCTAGAAAGTCTTTGTGGCGTACCATTTGGGAAACT
* * * *
17297720 TTTGTAGTGAATTATCTAGAAAGTCATTGT
1 TTTGTGGCGAATTCTCTAGAAAGTCTTTGT
17297750 AGTGAGTCTT
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
50 61 0.92
51 5 0.08
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40
Consensus pattern (50 bp):
TTTGTGGCGAATTCTCTAGAAAGTCTTTGTGGCGTACCATTTGGGAAACT
Found at i:17297691 original size:25 final size:25
Alignment explanation
Indices: 17297603--17297703 Score: 73
Period size: 25 Copynumber: 4.0 Consensus size: 25
17297593 GTAAACTCGA
*
17297603 GAATTCTCTAGAAA-ATCTTTGTGGC
1 GAATTCTCTAGAAAGCT-TTTGTGGC
* * *
17297628 AAATTCTCTGGAAAGTCTTTT-TGGT
1 GAATTCTCTAGAAAG-CTTTTGTGGC
* * *
17297653 GTA-TCATTTGGAAAGCTTTTGTGGC
1 GAATTC-TCTAGAAAGCTTTTGTGGC
* *
17297678 GAATTCTTTAGAAAGCCTTTGTGGC
1 GAATTCTCTAGAAAGCTTTTGTGGC
17297703 G
1 G
17297704 TACCATTTGG
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
24 7 0.12
25 47 0.78
26 5 0.08
27 1 0.02
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.39
Consensus pattern (25 bp):
GAATTCTCTAGAAAGCTTTTGTGGC
Found at i:17297787 original size:25 final size:25
Alignment explanation
Indices: 17297758--17297837 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
17297748 GTAGTGAGTC
*
17297758 TTTGTGGTGTATCATTTGGAAAGCT
1 TTTGTGGCGTATCATTTGGAAAGCT
* * *
17297783 TTTGTGGCGAATTC-TTTAGAAAGCC
1 TTTGTGGCGTA-TCATTTGGAAAGCT
*
17297808 TTTGTGGCGTACCATTTGGGAAA-CT
1 TTTGTGGCGTATCATTT-GGAAAGCT
17297833 TTTGT
1 TTTGT
17297838 AGTGAATTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
24 1 0.02
25 37 0.84
26 6 0.14
ACGTcount: A:0.20, C:0.12, G:0.26, T:0.41
Consensus pattern (25 bp):
TTTGTGGCGTATCATTTGGAAAGCT
Found at i:17297835 original size:50 final size:50
Alignment explanation
Indices: 17297757--17297855 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
17297747 TGTAGTGAGT
* * * * *
17297757 CTTTGTGGTGTATCATTTGGAAAGCTTTTGTGGCGAATTCTTTAGAAAGC
1 CTTTGTGGCGTACCATTTGGAAAGCTTTTGTAGCGAATTATCTAGAAAGC
*
17297807 CTTTGTGGCGTACCATTTGGGAAA-CTTTTGTAGTGAATTATCTAGAAAG
1 CTTTGTGGCGTACCATTT-GGAAAGCTTTTGTAGCGAATTATCTAGAAAG
17297856 TCATTGTAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
50 37 0.88
51 5 0.12
ACGTcount: A:0.24, C:0.12, G:0.25, T:0.38
Consensus pattern (50 bp):
CTTTGTGGCGTACCATTTGGAAAGCTTTTGTAGCGAATTATCTAGAAAGC
Found at i:17297839 original size:113 final size:113
Alignment explanation
Indices: 17297641--17297869 Score: 449
Period size: 113 Copynumber: 2.0 Consensus size: 113
17297631 TTCTCTGGAA
*
17297641 AGTCTTTTTGGTGTATCATTTGGAAAGCTTTTGTGGCGAATTCTTTAGAAAGCCTTTGTGGCGTA
1 AGTCTTTGTGGTGTATCATTTGGAAAGCTTTTGTGGCGAATTCTTTAGAAAGCCTTTGTGGCGTA
17297706 CCATTTGGGAAACTTTTGTAGTGAATTATCTAGAAAGTCATTGTAGTG
66 CCATTTGGGAAACTTTTGTAGTGAATTATCTAGAAAGTCATTGTAGTG
17297754 AGTCTTTGTGGTGTATCATTTGGAAAGCTTTTGTGGCGAATTCTTTAGAAAGCCTTTGTGGCGTA
1 AGTCTTTGTGGTGTATCATTTGGAAAGCTTTTGTGGCGAATTCTTTAGAAAGCCTTTGTGGCGTA
17297819 CCATTTGGGAAACTTTTGTAGTGAATTATCTAGAAAGTCATTGTAGTG
66 CCATTTGGGAAACTTTTGTAGTGAATTATCTAGAAAGTCATTGTAGTG
17297867 AGT
1 AGT
17297870 TGTTATTTCA
Statistics
Matches: 115, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 115 1.00
ACGTcount: A:0.24, C:0.11, G:0.25, T:0.39
Consensus pattern (113 bp):
AGTCTTTGTGGTGTATCATTTGGAAAGCTTTTGTGGCGAATTCTTTAGAAAGCCTTTGTGGCGTA
CCATTTGGGAAACTTTTGTAGTGAATTATCTAGAAAGTCATTGTAGTG
Found at i:17301567 original size:46 final size:46
Alignment explanation
Indices: 17301517--17301692 Score: 192
Period size: 46 Copynumber: 3.8 Consensus size: 46
17301507 TGTTTGGGCA
*
17301517 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
17301563 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
17301610 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
17301656 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
17301693 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:17301672 original size:93 final size:93
Alignment explanation
Indices: 17301513--17301684 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
17301503 AGGATGTTTG
*** *
17301513 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAG
17301578 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
17301606 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAG
17301671 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
17301685 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:17309536 original size:2 final size:2
Alignment explanation
Indices: 17309524--17309564 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
17309514 TAATTAAAAC
*
17309524 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17309565 AAGAGTTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:17312467 original size:28 final size:26
Alignment explanation
Indices: 17312416--17312479 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 26
17312406 AAACAAGAAC
*
17312416 AAAAACTAAAACTAAAACTTAAAAGT
1 AAAAACTAAAACTAAAACTGAAAAGT
17312442 AAAAACCTAAAAACTAAGAA-TGAAAAGT
1 AAAAA-CT-AAAACTAA-AACTGAAAAGT
*
17312470 GAAAA-TAAAA
1 AAAAACTAAAA
17312480 GGGAAGCCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
25 4 0.12
26 6 0.18
27 2 0.06
28 19 0.58
29 2 0.06
ACGTcount: A:0.67, C:0.09, G:0.08, T:0.16
Consensus pattern (26 bp):
AAAAACTAAAACTAAAACTGAAAAGT
Found at i:17313641 original size:19 final size:19
Alignment explanation
Indices: 17313598--17313634 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
17313588 CTAATTTAAT
17313598 TTTTATAATATAATATTTC
1 TTTTATAATATAATATTTC
* *
17313617 TTTTATATTATTATATTT
1 TTTTATAATATAATATTT
17313635 TTCTTATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTATAATATAATATTTC
Found at i:17313691 original size:3 final size:3
Alignment explanation
Indices: 17313683--17313726 Score: 79
Period size: 3 Copynumber: 14.3 Consensus size: 3
17313673 CATCTAAATA
17313683 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T
17313727 CCTTTTATTG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 37 0.93
4 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:17315677 original size:24 final size:24
Alignment explanation
Indices: 17315650--17315706 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
17315640 AAACCTAATT
*
17315650 CTAATCAATGTCAAATATATTATG
1 CTAATAAATGTCAAATATATTATG
* *
17315674 CTAATAAATGTTAAATATATTATA
1 CTAATAAATGTCAAATATATTATG
*
17315698 TTAATAAAT
1 CTAATAAAT
17315707 ATTAAATCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.40
Consensus pattern (24 bp):
CTAATAAATGTCAAATATATTATG
Found at i:17315711 original size:24 final size:24
Alignment explanation
Indices: 17315662--17315713 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
17315652 AATCAATGTC
* *
17315662 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATATT
*
17315686 AAATATATTATATTAATAAATATT
1 AAATATATTATACTAATAAATATT
17315710 AAAT
1 AAAT
17315714 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (24 bp):
AAATATATTATACTAATAAATATT
Found at i:17316455 original size:2 final size:2
Alignment explanation
Indices: 17316448--17316476 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
17316438 AACCTAAACC
17316448 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17316477 TGATTCTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:17326577 original size:21 final size:22
Alignment explanation
Indices: 17326553--17326605 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
17326543 GTCCCACGAG
*
17326553 GCCACGACCACA-GTTCCACAA
1 GCCACAACCACAGGTTCCACAA
*
17326574 GCCACAAACA-AGGTTCCACAA
1 GCCACAACCACAGGTTCCACAA
17326595 GCCACAACCAC
1 GCCACAACCAC
17326606 TGTCAGTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.38, C:0.42, G:0.13, T:0.08
Consensus pattern (22 bp):
GCCACAACCACAGGTTCCACAA
Found at i:17326986 original size:16 final size:16
Alignment explanation
Indices: 17326967--17326997 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17326957 TACTAATCAA
*
17326967 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
17326983 AGTTTCCATGTTTCT
1 AGTTTCCATGTTTCT
17326998 ACCTGTCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.16, G:0.16, T:0.55
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:17327146 original size:45 final size:45
Alignment explanation
Indices: 17327076--17327166 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
17327066 AATTAAATTA
** * *
17327076 ACCATTATTAGCAGGTTTAGTTTCATTTAATTCATGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
*
17327121 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATTTAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
17327166 A
1 A
17327167 TATATTAATG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (45 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Found at i:17327221 original size:2 final size:2
Alignment explanation
Indices: 17327214--17327242 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17327204 ATATTAATGC
17327214 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17327243 ATGTTTTGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:17327248 original size:56 final size:53
Alignment explanation
Indices: 17327135--17327260 Score: 137
Period size: 56 Copynumber: 2.3 Consensus size: 53
17327125 TTATTAGCAG
* * * * *
17327135 GTTTAACTTCATTTAAGTCAAGCATATTTATATATATTAATGCATATGTATACT
1 GTTTAGCTTCATTTAAATCAAGCATATATATATATATTAAT-CATATATATAAT
*
17327189 GTTTAGCTTCATTTAATATTAATGCATATATATATATATATATAT-ATATATATAAT
1 GTTTAGCTTCATTTAA-ATCAA-GCATATATATATATAT-TA-ATCATATATATAAT
*
17327245 GTTTTGCTTCATTTAA
1 GTTTAGCTTCATTTAA
17327261 GTCATGCGCA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
54 15 0.25
55 3 0.05
56 39 0.64
57 2 0.03
58 2 0.03
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.48
Consensus pattern (53 bp):
GTTTAGCTTCATTTAAATCAAGCATATATATATATATTAATCATATATATAAT
Found at i:17327298 original size:43 final size:42
Alignment explanation
Indices: 17327251--17327331 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 42
17327241 TAATGTTTTG
*
17327251 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCATTTAA
17327294 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
17327332 AATTAGCAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
41 6 0.17
42 15 0.42
43 15 0.42
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (42 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATTTAA
Found at i:17327425 original size:36 final size:36
Alignment explanation
Indices: 17327378--17327450 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
17327368 ATATATATAT
* *
17327378 ATATTAATGCATATGTATACTGTTTACCTTCATTTA
1 ATATTAATGCATATATATAATGTTTACCTTCATTTA
**
17327414 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTACCTTCATTTA
17327450 A
1 A
17327451 GTCATGCGCA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTACCTTCATTTA
Found at i:17327539 original size:2 final size:2
Alignment explanation
Indices: 17327521--17327558 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
17327511 TAAGTCATGC
17327521 AT AT ACT AT AT -T AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17327559 AAAACCAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 2 0.06
2 29 0.88
3 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17331009 original size:21 final size:22
Alignment explanation
Indices: 17330985--17331027 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
17330975 TTACATGTAA
* *
17330985 TTATTTAG-TAAATTATATTGT
1 TTATGTAGTTAAATAATATTGT
17331006 TTATGTAGTTAAATAATATTGT
1 TTATGTAGTTAAATAATATTGT
17331028 ACTTCGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (22 bp):
TTATGTAGTTAAATAATATTGT
Found at i:17334637 original size:23 final size:25
Alignment explanation
Indices: 17334611--17334657 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
17334601 TATCATTCAT
*
17334611 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
17334634 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
17334658 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:17334978 original size:46 final size:47
Alignment explanation
Indices: 17334918--17335183 Score: 319
Period size: 46 Copynumber: 6.0 Consensus size: 47
17334908 TTTGACGTGA
* * * * *
17334918 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
* * *
17334964 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
*
17335010 TGCCATGGTATCTTTCAACCATGGTCTTA--CATATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCAT-TTTCATATCAGGT
*
17335056 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
17335102 TGCCATGGTATCTTTCAACCATGGTCTTA--CA----C--A-CAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
*
17335140 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAG
17335184 AGAGCACACT
Statistics
Matches: 198, Mismatches: 9, Indels: 26
0.85 0.04 0.11
Matches are distributed among these distances:
38 34 0.17
39 1 0.01
40 2 0.01
41 1 0.01
43 1 0.01
44 3 0.02
45 7 0.04
46 147 0.74
48 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATATCAGGT
Found at i:17335148 original size:38 final size:38
Alignment explanation
Indices: 17335097--17335172 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
17335087 CATTTCATAT
17335097 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
17335135 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
17335173 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:17340219 original size:43 final size:43
Alignment explanation
Indices: 17340163--17340559 Score: 546
Period size: 43 Copynumber: 9.2 Consensus size: 43
17340153 ACATATCGTA
* * *
17340163 CAATGCCAATGTCCCAAACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
* *
17340206 CGATGCC-ACTGTCCCAGACAG-GGTCTTACACTTAATCACATAT
1 CAATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCACATAT
* * *
17340249 CAATGCCAACGTCCTAGATGTGGTCTTACACATAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
* *
17340292 CAATGCCAACGTCCTAGACATGGTCTTACACGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
** *
17340335 TGATGCCAACATCCCAGACGTGGTCTTACACGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
* * * *
17340378 TAATGCCAACGTCCCAAACGTGGTCTTATATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
*
17340421 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAGATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
* *
17340464 CAATGGCAACATCCCAGACGTGGTCTTACACGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
* * * *
17340507 CACTGCCAACATCCCAAACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
17340550 CAATGCCAAC
1 CAATGCCAAC
17340560 TAAAAAATGT
Statistics
Matches: 315, Mismatches: 35, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
42 2 0.01
43 310 0.98
44 3 0.01
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGTAATCACATAT
Found at i:17344009 original size:68 final size:71
Alignment explanation
Indices: 17343859--17344016 Score: 191
Period size: 68 Copynumber: 2.3 Consensus size: 71
17343849 CTAGCCAATT
* *
17343859 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
**
17343924 TTTATC
66 CATATC
* * *
17343930 TTTCTCGTAGCTCTCTTGTCTACATGG-GATACATC-C-T-GTATCACACATGTGACCTAGCTAC
1 TATCTCGTAGCTCTCTTGTCTACATGGTG-TACATCACTTGGAATCACACATGCGACCTAGCTAC
*
17343991 TACATA-G
65 -ACATATC
17343998 TATCTCGTAGCTCTCTTGT
1 TATCTCGTAGCTCTCTTGT
17344017 ACACATGATG
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
68 40 0.53
69 4 0.05
70 2 0.03
71 30 0.39
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (71 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTTGGAATCACACATGCGACCTAGCTACA
CATATC
Found at i:17344023 original size:68 final size:68
Alignment explanation
Indices: 17343805--17344016 Score: 190
Period size: 68 Copynumber: 3.1 Consensus size: 68
17343795 ATATAATTCG
* * * *
17343805 GCTCTCTTGTAC-ACATGGTGA-ACA-CTTAGTACCACCCATGTGACCTAGC--CAAT-TTATCT
1 GCTCTCTTGT-CTACATGGTGATACATCCTAGTATCACACATGTGACCTAGCTACAATACTATCT
17343864 CGTA
65 CGTA
* * * * * * *
17343868 GCTCTCTTGTCTACATGGTG-TCCTTCACTTGGAATCACACATGCGACCTAGCTACATTTATCTT
1 GCTCTCTTGTCTACATGGTGATACATC-C-TAGTATCACACATGTGACCTAGCTACA-ATA-CTA
17343932 TCTCGTA
62 TCTCGTA
*
17343939 GCTCTCTTGTCTACATGG-GATACATCCT-GTATCACACATGTGACCTAGCTACTACATAGTATC
1 GCTCTCTTGTCTACATGGTGATACATCCTAGTATCACACATGTGACCTAGCTAC-A-ATACTATC
17344002 TCGTA
64 TCGTA
17344007 GCTCTCTTGT
1 GCTCTCTTGT
17344017 ACACATGATG
Statistics
Matches: 118, Mismatches: 19, Indels: 19
0.76 0.12 0.12
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 1 0.01
66 18 0.15
68 42 0.36
69 5 0.04
70 2 0.02
71 30 0.25
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (68 bp):
GCTCTCTTGTCTACATGGTGATACATCCTAGTATCACACATGTGACCTAGCTACAATACTATCTC
GTA
Found at i:17346892 original size:44 final size:42
Alignment explanation
Indices: 17346749--17346907 Score: 173
Period size: 44 Copynumber: 3.7 Consensus size: 42
17346739 AGCTCGTACA
* * *
17346749 ATGCCAACATCCCAGACGTAGTCTTATATGTAAA-CAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAAATC-AA-ATCG
17346792 ATGCC-ACTATCCCAGACAG-GGTCTTACACG-AAATCAAATACG
1 ATGCCAAC-ATCCCAGAC-GTGGTCTTACACGTAAATCAAAT-CG
*
17346834 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAAATCA-AA-TCG
* *
17346878 ATGCCAACGTCCCAGACATGGTCTTACACG
1 ATGCCAACATCCCAGACGTGGTCTTACACG
17346908 AAAACACATA
Statistics
Matches: 102, Mismatches: 5, Indels: 17
0.82 0.04 0.14
Matches are distributed among these distances:
41 3 0.03
42 33 0.32
43 31 0.30
44 34 0.33
45 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTAAATCAAATCG
Found at i:17346907 original size:86 final size:85
Alignment explanation
Indices: 17346749--17346910 Score: 220
Period size: 86 Copynumber: 1.9 Consensus size: 85
17346739 AGCTCGTACA
* *
17346749 ATGCCAACATCCCAGACGTAGTCTTATATGTAAACAAATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAACATCCCAGACGTAGTCTTACACGTAAACAAATATCGATGCCACTATCCCAGACAGGGT
17346814 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* * * * *
17346834 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGACAT
1 ATGCCAACATCCCAGACGTAGTCTTACACGTAAA-CA-AATATCGATGCC-ACTATCCCAGACAG
17346897 GGTCTTACACGAAA
63 GGTCTTACACGAAA
17346911 ACACATATCG
Statistics
Matches: 67, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
85 30 0.45
86 33 0.49
87 4 0.06
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (85 bp):
ATGCCAACATCCCAGACGTAGTCTTACACGTAAACAAATATCGATGCCACTATCCCAGACAGGGT
CTTACACGAAATCAAATACG
Found at i:17348773 original size:43 final size:43
Alignment explanation
Indices: 17348691--17348790 Score: 112
Period size: 43 Copynumber: 2.3 Consensus size: 43
17348681 TGTGATTTCA
* * * *
17348691 TGTAGGACCATGTCTAGGACATTGGCATTGTATTGTGATTCCG
1 TGTAAGACCATGTCCAGGACATTGGCATCGTATTATGATTCCG
* *
17348734 TGTAAGACCATGTCCAGGATATTGGCATCGT-TATATGATTTCG
1 TGTAAGACCATGTCCAGGACATTGGCATCGTAT-TATGATTCCG
* *
17348777 TATAAGACCCTGTC
1 TGTAAGACCATGTC
17348791 TGGGACAGTT
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.02
43 47 0.98
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCCAGGACATTGGCATCGTATTATGATTCCG
Found at i:17354120 original size:12 final size:13
Alignment explanation
Indices: 17354103--17354140 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
17354093 ATCTTGGAAT
17354103 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
17354115 ATTAAGAACACATA
1 ATTAAGAACA-AGA
17354129 ATTAAGAACAAG
1 ATTAAGAACAAG
17354141 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:17360180 original size:40 final size:40
Alignment explanation
Indices: 17360125--17360368 Score: 301
Period size: 40 Copynumber: 6.1 Consensus size: 40
17360115 TGAATGATAC
* * * * **
17360125 CCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * * *
17360165 CCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGACTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-TTATAT
*
17360205 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
*
17360245 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* *
17360285 CCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
* * ** *
17360325 CCGGGCTAAGACCCGAGGGCATTCGTGCGTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
17360365 CCGG
1 CCGG
17360369 TTGTATTTCG
Statistics
Matches: 182, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
40 180 0.99
41 2 0.01
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGTTATAT
Found at i:17369065 original size:43 final size:43
Alignment explanation
Indices: 17368911--17369066 Score: 108
Period size: 43 Copynumber: 3.6 Consensus size: 43
17368901 GTGTTTTTGA
* * * *
17368911 GTAAGACCACGTTTGGGACGCTGGCATCGACT-TATGATTTACGT
1 GTAAGACCACGTCTGAGACGTTGGCATCGA-TATTTGA-TTACGT
* * * * * *
17368955 GTAAGACCATGTTTGGGACATTGACATCG-TATTTTA-TATCGT
1 GTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTA-CGT
* *
17368997 GTAAGACC-CTGTCT-AGGGCAG-TGGCATCGATATTTGATTACAT
1 GTAAGACCAC-GTCTGA-GAC-GTTGGCATCGATATTTGATTACGT
17369040 GTAAGACCACGTCTGAGACGTTGGCAT
1 GTAAGACCACGTCTGAGACGTTGGCAT
17369067 TGTACGAGCT
Statistics
Matches: 87, Mismatches: 15, Indels: 21
0.71 0.12 0.17
Matches are distributed among these distances:
41 2 0.02
42 25 0.29
43 31 0.36
44 29 0.33
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.31
Consensus pattern (43 bp):
GTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACGT
Found at i:17378331 original size:47 final size:47
Alignment explanation
Indices: 17378268--17378661 Score: 583
Period size: 47 Copynumber: 8.4 Consensus size: 47
17378258 CCCTTCGGGA
* * *
17378268 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
17378315 CTTATCACATATATACACCTTT-ACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACA-CTTTCACATTCATCACATTGGCCATTAGGC
* * *
17378362 ATTATCTCATATATACACTTTCACATTCATCACATTGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
17378409 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
17378456 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
17378503 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
17378550 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
17378597 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
17378644 CTTATCACATATACACAC
1 CTTATCACATATATACAC
17378662 CTTGTACATC
Statistics
Matches: 317, Mismatches: 28, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
46 4 0.01
47 309 0.97
48 4 0.01
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:17381511 original size:43 final size:43
Alignment explanation
Indices: 17381461--17381617 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
17381451 TATGTTTTCT
*
17381461 CGTGTAAGACCACGTATGGGACGTTGGCATCGATATGTGATTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
** * * * * *
17381504 CGTGTAAGACCATATCTGGGACATCGGCATTG-TATTTAATT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
*
17381545 CGTGTAAGACC-CTGTCTAGGG-CAG-GGGCATCGATATGTGA-TA
1 CGTGTAAGACCAC-GTCT-GGGAC-GTTGGCATCGATATGTGATTA
* * *
17381587 GCATGAAAGACCACGTTTGGGACGTTGGCAT
1 -CGTGTAAGACCACGTCTGGGACGTTGGCAT
17381618 TGTACAATAT
Statistics
Matches: 86, Mismatches: 19, Indels: 18
0.70 0.15 0.15
Matches are distributed among these distances:
41 22 0.26
42 19 0.22
43 44 0.51
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTA
Found at i:17381824 original size:20 final size:21
Alignment explanation
Indices: 17381789--17381827 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
17381779 TTGCAAATCA
17381789 TATATGATGTAAATGAAAAAT
1 TATATGATGTAAATGAAAAAT
*
17381810 TATATG-TGTATATGAAAA
1 TATATGATGTAAATGAAAA
17381828 GTACATTCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.49, C:0.00, G:0.15, T:0.36
Consensus pattern (21 bp):
TATATGATGTAAATGAAAAAT
Found at i:17383336 original size:27 final size:27
Alignment explanation
Indices: 17383306--17383412 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
17383296 GGTTGCCAAA
** * *
17383306 ACAGATAATGTGATAGAGTCACTAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
17383333 ACAGATAATCGTGGCAGAGCCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
17383360 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
17383388 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
17383413 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
26 1 0.01
27 55 0.77
28 15 0.21
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:17383392 original size:54 final size:54
Alignment explanation
Indices: 17383305--17383412 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 54
17383295 TGGTTGCCAA
* * *
17383305 AACAGATAATGTGATAGAGTCACTAGATACAGATAATCGTGGCAGAGCCACCAG
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAG
* * *
17383359 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCACCAG
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAG
17383413 GACGCTTCCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 31 0.66
55 16 0.34
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACCAG
Found at i:17384831 original size:24 final size:24
Alignment explanation
Indices: 17384805--17384905 Score: 139
Period size: 24 Copynumber: 4.2 Consensus size: 24
17384795 CCAACACTGT
* * *
17384805 TCTCCCTAATCAGCTCCTAAATCT
1 TCTCCCTTATCAACTCCTAAATCC
* *
17384829 TCTCTCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
17384853 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
17384877 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
17384901 TCTCC
1 TCTCC
17384906 TGATAGACTT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.25, C:0.39, G:0.02, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:17387092 original size:32 final size:32
Alignment explanation
Indices: 17387049--17387113 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
17387039 ATGTCTGAAA
*
17387049 AGCCCCTTATGAATCATAGGAATAGTTAGGAT
1 AGCCCCATATGAATCATAGGAATAGTTAGGAT
17387081 AGCCCCATATGAATCATAGGAATAGTTAGGAT
1 AGCCCCATATGAATCATAGGAATAGTTAGGAT
17387113 A
1 A
17387114 CATATGTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (32 bp):
AGCCCCATATGAATCATAGGAATAGTTAGGAT
Found at i:17387212 original size:44 final size:42
Alignment explanation
Indices: 17387145--17387298 Score: 132
Period size: 43 Copynumber: 3.6 Consensus size: 42
17387135 CGATATGTGT
* * * *
17387145 TTTCGTGTAAGAACACGTCTGGGACGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTA-TT-TGA
* * *
17387188 TTTATGTGTAATACCATGTCTGGGACATCGGCATTGTATTTGA
1 TTT-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
* * *
17387231 TTTCGTGTAAGACCCTGTCTGGGACAGT-GGAATCAATATTTGA
1 TTTCGTGTAAGACCATGTCTGGGACA-TCGGCATC-GTATTTGA
* * *
17387274 TTGCATGTAAGACCACGTCTGGGAC
1 TTTCGTGTAAGACCATGTCTGGGAC
17387299 GTTGGCATTG
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 24 0.27
43 38 0.42
44 27 0.30
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGA
Found at i:17390265 original size:84 final size:83
Alignment explanation
Indices: 17390140--17390424 Score: 369
Period size: 84 Copynumber: 3.4 Consensus size: 83
17390130 TTTGGGACGT
* * * *
17390140 TGGCATCGATATTTGATTACGTGTAAAACCATGTTTGGGACATCGACATCGTATTTGATTTGTGT
1 TGGCATCGATATGTGATTACGTGTAAGACCATGTCT-GGACATCGACATCGTATTTGATTCGTGT
*
17390205 AAGACCCTATCTAGGACAG
65 AAGACCCTGTCTAGGACAG
* * * *
17390224 TGGCATCGATATGTGATTACGTGTAAGACCCTATCTAGGACAGT-GGCATCGATATGTGATTACG
1 TGGCATCGATATGTGATTACGTGTAAGACCATGTCT-GGACA-TCGACATCG-TATTTGATT-CG
17390288 TGTAAGACCCTGTCTAGGACAG
62 TGTAAGACCCTGTCTAGGACAG
17390310 TGGCATCGATATGTGATTACGTGTAAGACCATGTCTGAGACATC-AGCATCGTATTTGATTCGTG
1 TGGCATCGATATGTGATTACGTGTAAGACCATGTCTG-GACATCGA-CATCGTATTTGATTCGTG
*
17390374 TAAGACCTTGT-TAGGGACAG
64 TAAGACCCTGTCTA-GGACAG
* *
17390394 TGGCATTGATATGTGATTACATGTAAGACCA
1 TGGCATCGATATGTGATTACGTGTAAGACCA
17390425 CGTTTGGGAC
Statistics
Matches: 177, Mismatches: 17, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
83 2 0.01
84 91 0.51
85 19 0.11
86 65 0.37
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (83 bp):
TGGCATCGATATGTGATTACGTGTAAGACCATGTCTGGACATCGACATCGTATTTGATTCGTGTA
AGACCCTGTCTAGGACAG
Found at i:17390394 original size:170 final size:170
Alignment explanation
Indices: 17390108--17390423 Score: 460
Period size: 170 Copynumber: 1.9 Consensus size: 170
17390098 GATTTTGATG
* * *
17390108 TGTGATTACATGTAAGACCACGTTTGGGACGTTGGCATCGATATTTGATTACGTGTAAAACCATG
1 TGTGATTACATGTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACGTGTAAAACCATG
* * *
17390173 TTTGGGACATCGACATCGTATTTGATTTGTGTAAGACCCTATCTAGGACAGTGGCATCGATATGT
66 TCTGAGACATCGACATCGTATTTGATTCGTGTAAGACCCTATCTAGGACAGTGGCATCGATATGT
*
17390238 GATTACGTGTAAGACCCTATCTAGGACAGTGGCATCGATA
131 GATTACATGTAAGACCCTATCTAGGACAGTGGCATCGATA
* *
17390278 TGTGATTACGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATATGTGATTACGTGTAAGACCA
1 TGTGATTACATGTAAGACCAC-GTCTAGGAC-GTTGGCATCGATATGTGATTACGTGTAAAACCA
* * *
17390341 TGTCTGAGACATC-AGCATCGTATTTGATTCGTGTAAGACCTTGT-TAGGGACAGTGGCATTGAT
64 TGTCTGAGACATCGA-CATCGTATTTGATTCGTGTAAGACCCTATCTA-GGACAGTGGCATCGAT
17390404 ATGTGATTACATGTAAGACC
127 ATGTGATTACATGTAAGACC
17390424 ACGTTTGGGA
Statistics
Matches: 130, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
169 4 0.03
170 125 0.96
171 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (170 bp):
TGTGATTACATGTAAGACCACGTCTAGGACGTTGGCATCGATATGTGATTACGTGTAAAACCATG
TCTGAGACATCGACATCGTATTTGATTCGTGTAAGACCCTATCTAGGACAGTGGCATCGATATGT
GATTACATGTAAGACCCTATCTAGGACAGTGGCATCGATA
Found at i:17390441 original size:127 final size:127
Alignment explanation
Indices: 17390108--17390442 Score: 344
Period size: 127 Copynumber: 2.6 Consensus size: 127
17390098 GATTTTGATG
* * * * * *
17390108 TGTGATTACATGTAAGACCACGTTTGGGAC-GTTGGCATCGATATTTGATTACGTGTAAAACCAT
1 TGTGATTACGTGTAAGACCATGTTAGGGACAG-TGGCATCGATATGTGATTACGTGTAAGACCAC
* * * * * * *
17390172 GTTTGGGACATCGACATCGTATTTGATTTGTGTAAGACCCTATCTAGGACAGTGGCATCGATA
65 GTTTGGGACGTTGGCATCGTATGTGATTCGTGTAAGACCATATCTAGGACAGTAGCATCGATA
* *
17390235 TGTGATTACGTGTAAGACCCTATCTA-GGACAGTGGCATCGATATGTGATTACGTGTAAGACC-C
1 TGTGATTACGTGTAAGACCATGT-TAGGGACAGTGGCATCGATATGTGATTACGTGTAAGACCAC
* * *
17390298 TGTCTAGGACAG-TGGCATCGATATGTGATTACGTGTAAGACCATGTCT-GAGACA-TCAGCATC
65 -GTTTGGGAC-GTTGGCATCG-TATGTGATT-CGTGTAAGACCATATCTAG-GACAGT-AGCATC
17390360 G-TA
124 GATA
* * * *
17390363 TTTGATT-CGTGTAAGACCTTGTTAGGGACAGTGGCATTGATATGTGATTACATGTAAGACCACG
1 TGTGATTACGTGTAAGACCATGTTAGGGACAGTGGCATCGATATGTGATTACGTGTAAGACCACG
17390427 TTTGGGACGTTGGCAT
66 TTTGGGACGTTGGCAT
17390443 TGTACGATAT
Statistics
Matches: 172, Mismatches: 25, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
126 3 0.02
127 124 0.72
128 21 0.12
129 24 0.14
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (127 bp):
TGTGATTACGTGTAAGACCATGTTAGGGACAGTGGCATCGATATGTGATTACGTGTAAGACCACG
TTTGGGACGTTGGCATCGTATGTGATTCGTGTAAGACCATATCTAGGACAGTAGCATCGATA
Found at i:17390444 original size:43 final size:43
Alignment explanation
Indices: 17390108--17390442 Score: 309
Period size: 43 Copynumber: 7.9 Consensus size: 43
17390098 GATTTTGATG
*
17390108 TGTGATTACATGTAAGACCACGTTTGGGAC-GTTGGCATCGATA
1 TGTGATTACGTGTAAGACCACGTTTGGGACAG-TGGCATCGATA
* * * *
17390151 TTTGATTACGTGTAAAACCATGTTTGGGACA-TCGACATCG-TA
1 TGTGATTACGTGTAAGACCACGTTTGGGACAGT-GGCATCGATA
* * *
17390193 TTTGATT-TGTGTAAGACC-C-TATCTAGGACAGTGGCATCGATA
1 TGTGATTACGTGTAAGACCACGT-T-TGGGACAGTGGCATCGATA
*
17390235 TGTGATTACGTGTAAGACC-C-TATCTAGGACAGTGGCATCGATA
1 TGTGATTACGTGTAAGACCACGT-T-TGGGACAGTGGCATCGATA
* *
17390278 TGTGATTACGTGTAAGACC-CTGTCTAGGACAGTGGCATCGATA
1 TGTGATTACGTGTAAGACCAC-GTTTGGGACAGTGGCATCGATA
* * * *
17390321 TGTGATTACGTGTAAGACCATGTCTGAGACA-TCAGCATCG-TA
1 TGTGATTACGTGTAAGACCACGTTTGGGACAGT-GGCATCGATA
* ** * *
17390363 TTTGATT-CGTGTAAGACCTTGTTAGGGACAGTGGCATTGATA
1 TGTGATTACGTGTAAGACCACGTTTGGGACAGTGGCATCGATA
*
17390405 TGTGATTACATGTAAGACCACGTTTGGGAC-GTTGGCAT
1 TGTGATTACGTGTAAGACCACGTTTGGGACAG-TGGCAT
17390443 TGTACGATAT
Statistics
Matches: 248, Mismatches: 29, Indels: 30
0.81 0.09 0.10
Matches are distributed among these distances:
39 1 0.00
40 1 0.00
41 45 0.18
42 38 0.15
43 162 0.65
45 1 0.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTGATTACGTGTAAGACCACGTTTGGGACAGTGGCATCGATA
Found at i:17391332 original size:21 final size:21
Alignment explanation
Indices: 17391308--17391351 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
17391298 TAGTAATGGT
17391308 TTAATTTGGTTAACGAATGTA
1 TTAATTTGGTTAACGAATGTA
17391329 TTAATTTGGTTAACGAATGTA
1 TTAATTTGGTTAACGAATGTA
17391350 TT
1 TT
17391352 CAGCAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.45
Consensus pattern (21 bp):
TTAATTTGGTTAACGAATGTA
Found at i:17391775 original size:13 final size:14
Alignment explanation
Indices: 17391747--17391779 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
17391737 CATTTCGACC
*
17391747 ATGTTTATATTTAT
1 ATGTTTATATTGAT
17391761 ATGTTT-TATTGAT
1 ATGTTTATATTGAT
17391774 ATGTTT
1 ATGTTT
17391780 GTTTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (14 bp):
ATGTTTATATTGAT
Found at i:17398982 original size:27 final size:26
Alignment explanation
Indices: 17398947--17399058 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
17398937 AGCATGGCTG
*
17398947 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
*
17398973 CCAGATACAGATAATCGTGACAGAACCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* *
17399001 CCATAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
17399028 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
17399055 CCAG
1 CCAG
17399059 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:17411849 original size:40 final size:40
Alignment explanation
Indices: 17411691--17411851 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
17411681 CGACAAATCA
* * **
17411691 GCTATATATGGCACCTAGTGTGCGATTCGATATAGCTTCA
1 GCTATATATGGCACTTAGTGTGCGATTCGAGATAGCTTTG
* * *
17411731 GCTATATATGGCACTTAGTGTGAGATTCTACATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCGAGATAGCTTTG
*
17411771 GCTATATATGGCACTTAGT-TGCGAGATCGAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGA-TTCGAGATAGCTTTG
* * * *
17411811 GCTACATATGGCACTTAATGTGTGATTTGAGATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCGAGATAGCTTTG
17411851 G
1 G
17411852 TTATGACGCG
Statistics
Matches: 104, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 4 0.04
40 96 0.92
41 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCGAGATAGCTTTG
Found at i:17426867 original size:41 final size:43
Alignment explanation
Indices: 17426768--17426870 Score: 113
Period size: 41 Copynumber: 2.4 Consensus size: 43
17426758 AAGGCCAATG
** *
17426768 TCCCAGATGTGGTCTTACATGTAATCACATATCGATGCCATTA
1 TCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCATTA
* * *
17426811 TCCCAGACAAGGTCTTACATG-AATCAAATAT-GATGTCGA-TG
1 TCCCAGACATGGTCTTACATGTAATCAAATATCGATG-CCATTA
*
17426852 TCCTAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
17426871 CATAACCACA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 22 0.43
42 11 0.22
43 18 0.35
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCATTA
Found at i:17427992 original size:14 final size:15
Alignment explanation
Indices: 17427975--17428003 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
17427965 TGACGAAAAT
17427975 TTCACACAT-ATAAA
1 TTCACACATAATAAA
17427989 TTCACACATAATAAA
1 TTCACACATAATAAA
17428004 CACTGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:17429163 original size:27 final size:27
Alignment explanation
Indices: 17429133--17429393 Score: 335
Period size: 27 Copynumber: 9.7 Consensus size: 27
17429123 CCAAAGTACT
*
17429133 CTCGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
*
17429160 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
* *
17429187 CTCGATTTATAAAATTACCGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
*
17429214 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
* *
17429241 CTCGATTTATAAAATTACAGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
* *
17429268 CTTGATTTACAAAATTATTGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
*
17429295 CTCGATTTACAAAATTA-TCATTTTACC
1 CTCGATTTACAAAATTACT-GTTTTACC
* * * * * *
17429322 GTCGATTTATAGAATTACTATTTTTCT
1 CTCGATTTACAAAATTACTGTTTTACC
* * *
17429349 CTTGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
17429376 CTCGATTTACAAAATTAC
1 CTCGATTTACAAAATTAC
17429394 AGAAATACCC
Statistics
Matches: 203, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 201 0.99
28 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
CTCGATTTACAAAATTACTGTTTTACC
Found at i:17429402 original size:27 final size:27
Alignment explanation
Indices: 17429372--17429457 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
17429362 ATTACTATTT
*
17429372 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
17429399 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
17429426 TACCC-CTAGTTTTTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
17429453 TACCC
1 TACCC
17429458 ATGGTTTGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 1 0.02
27 49 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.05, T:0.29
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:17429444 original size:54 final size:53
Alignment explanation
Indices: 17429386--17429512 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 53
17429376 CTCGATTTAC
* ***
17429386 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTTT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
17429440 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
17429494 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
17429513 TGTGGGGTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
53 4 0.07
54 54 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:17429464 original size:27 final size:27
Alignment explanation
Indices: 17429386--17429484 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
17429376 CTCGATTTAC
*
17429386 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
* *
17429413 AAAATTACCAAAATACCCCTAGTTTTT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
17429440 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
17429467 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
17429485 CTGTAGGGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
27 60 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:17429497 original size:27 final size:27
Alignment explanation
Indices: 17429467--17429528 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
17429457 CATGGTTTGA
17429467 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
17429494 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
17429521 AAAATTAC
1 AAAATTAC
17429529 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:17430180 original size:28 final size:28
Alignment explanation
Indices: 17430148--17430216 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
17430138 GCGTAGATCA
17430148 CGAAATTACCTCTAAAGAGCAAAATTAC
1 CGAAATTACCTCTAAAGAGCAAAATTAC
*
17430176 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCTCTAAAGAGCAAAATTAC
*
17430204 CGATA-TACCTCTA
1 CGAAATTACCTCTA
17430217 GGGTTTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 7 0.18
28 31 0.82
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (28 bp):
CGAAATTACCTCTAAAGAGCAAAATTAC
Found at i:17433118 original size:27 final size:27
Alignment explanation
Indices: 17433088--17433348 Score: 326
Period size: 27 Copynumber: 9.7 Consensus size: 27
17433078 CCAAAGTACT
*
17433088 CTCGATTTACAAAATTACCGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
*
17433115 CTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
* *
17433142 CTCGATTTATAAAATTACCGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
* *
17433169 CTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
* *
17433196 CTCGATTTATAAAATTACCGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
* *
17433223 CTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
17433250 CTCGATTTACAAAATTA-TCGTTTTACC
1 CTCGATTTACAAAATTACT-GTTTTACC
* * * * * * *
17433277 GTCAATTTATAGAATTACTATTTTTCT
1 CTCGATTTACAAAATTACTGTTTTACC
* * *
17433304 CTTGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAAAATTACTGTTTTACC
17433331 CTCGATTTACAAAATTAC
1 CTCGATTTACAAAATTAC
17433349 AGAAATACCC
Statistics
Matches: 198, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 196 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
CTCGATTTACAAAATTACTGTTTTACC
Found at i:17433148 original size:54 final size:54
Alignment explanation
Indices: 17433088--17433348 Score: 378
Period size: 54 Copynumber: 4.8 Consensus size: 54
17433078 CCAAAGTACT
*
17433088 CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACC
*
17433142 CTCGATTTATAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACC
1 CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACC
* * *
17433196 CTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACC
1 CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACC
* * * * * *
17433250 CTCGATTTACAAAATTATCGTTTTACCGTCAATTTATAGAATTACTATTTTTCT
1 CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACC
* * ** *
17433304 CTTGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
17433349 AGAAATACCC
Statistics
Matches: 185, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 185 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (54 bp):
CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTATTTTACC
Found at i:17433212 original size:81 final size:81
Alignment explanation
Indices: 17433088--17433348 Score: 362
Period size: 81 Copynumber: 3.2 Consensus size: 81
17433078 CCAAAGTACT
* * * *
17433088 CTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATA
1 CTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACA
* *
17433153 AAATTACCGTTTTACC
66 GAATTACTGTTTTACC
* * * *
17433169 CTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACA
1 CTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACA
17433234 GAATTACTGTTTTACC
66 GAATTACTGTTTTACC
* * * * *
17433250 CTCGATTTACAAAATTA-TCGTTTTACCGTCAATTTATAGAATTACTATTTTTCTCTTGATTTAC
1 CTCGATTTACAAAATTACT-GTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTAC
*
17433314 AGAATTACTATTTTACC
65 AGAATTACTGTTTTACC
17433331 CTCGATTTACAAAATTAC
1 CTCGATTTACAAAATTAC
17433349 AGAAATACCC
Statistics
Matches: 158, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
80 1 0.01
81 157 0.99
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.42
Consensus pattern (81 bp):
CTCGATTTACAAAATTACTGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACA
GAATTACTGTTTTACC
Found at i:17433357 original size:27 final size:27
Alignment explanation
Indices: 17433327--17433412 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
17433317 ATTACTATTT
*
17433327 TACCCTCGATTTACAAAATTA-CAGAAA
1 TACCCTCAATTTACAAAATTACCA-AAA
**
17433354 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTACAAAATTACCAAAA
* **
17433381 TACCC-CTAGTTTTTAAAATTACCAAAA
1 TACCCTC-AATTTACAAAATTACCAAAA
17433408 TACCC
1 TACCC
17433413 ATGGTTTGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 1 0.02
27 49 0.94
28 2 0.04
ACGTcount: A:0.42, C:0.24, G:0.05, T:0.29
Consensus pattern (27 bp):
TACCCTCAATTTACAAAATTACCAAAA
Found at i:17433399 original size:54 final size:53
Alignment explanation
Indices: 17433341--17433467 Score: 132
Period size: 54 Copynumber: 2.4 Consensus size: 53
17433331 CTCGATTTAC
* ***
17433341 AAAATTACAGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-TTTT
1 AAAATTACAGAAATACCCT-AATTTGAAAAATTACCAAAATACCCCT-GTAGGGT
** *
17433395 AAAATTACCA-AAATACCCATGGTTTGAAAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTA-CAGAAATACCC-TAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
*
17433449 AAAATTACTGAAATACCCT
1 AAAATTACAGAAATACCCT
17433468 TGTGGGGTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
53 4 0.07
54 54 0.89
55 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (53 bp):
AAAATTACAGAAATACCCTAATTTGAAAAATTACCAAAATACCCCTGTAGGGT
Found at i:17433419 original size:27 final size:27
Alignment explanation
Indices: 17433341--17433439 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
17433331 CTCGATTTAC
*
17433341 AAAATTA-CAGAAATACCC-TCAATTTGT
1 AAAATTACCA-AAATACCCAT-AGTTTGT
* *
17433368 AAAATTACCAAAATACCCCTAGTTTTT
1 AAAATTACCAAAATACCCATAGTTTGT
* *
17433395 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCATAGTTTGT
*
17433422 AAAATTACTAAAATACCC
1 AAAATTACCAAAATACCC
17433440 CTGTAGGGTA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
27 60 0.95
28 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.06, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCATAGTTTGT
Found at i:17433452 original size:27 final size:27
Alignment explanation
Indices: 17433422--17433483 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
17433412 CATGGTTTGA
17433422 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
17433449 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
17433476 AAAATTAC
1 AAAATTAC
17433484 CATTTTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.27
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:17434136 original size:28 final size:28
Alignment explanation
Indices: 17434104--17434162 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
17434094 GCGTAGATCA
17434104 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
17434132 CGAAATTACCCCTAAAGAGCAAAATTAC
1 CGAAATTACCCCTAAAGAGCAAAATTAC
17434160 CGA
1 CGA
17434163 TATACCTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17
Consensus pattern (28 bp):
CGAAATTACCCCTAAAGAGCAAAATTAC
Found at i:17441292 original size:43 final size:43
Alignment explanation
Indices: 17441134--17441290 Score: 149
Period size: 43 Copynumber: 3.7 Consensus size: 43
17441124 TGTGTTCTCG
* *
17441134 TGTAAGACCACATCTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACATCTGGGACATTGGCATCGA-TATTTGA-TTACA
** * * *
17441178 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATTTCG
1 TGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTACA
* * * * *
17441220 TGTAAGACC-CTATCTAGGATAGTGGCATTGATATTTGGTTACA
1 TGTAAGACCAC-ATCTGGGACATTGGCATCGATATTTGATTACA
*
17441263 TGTAAGACCACGTCTGGGACATTGGCAT
1 TGTAAGACCACATCTGGGACATTGGCAT
17441291 TGTATGTGTA
Statistics
Matches: 88, Mismatches: 21, Indels: 9
0.75 0.18 0.08
Matches are distributed among these distances:
42 26 0.30
43 35 0.40
44 27 0.31
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTACA
Found at i:17442880 original size:3 final size:3
Alignment explanation
Indices: 17442867--17442915 Score: 80
Period size: 3 Copynumber: 15.7 Consensus size: 3
17442857 TCATACGGGT
17442867 TAA TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TATA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA
17442914 TA
1 TA
17442916 TAAAAAAAGG
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 38 0.86
4 6 0.14
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:17449563 original size:3 final size:3
Alignment explanation
Indices: 17449550--17449584 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
17449540 TCATACGGGT
17449550 TAA TAAA TAA TAA TAA TAA TAA TAA TAA T-A TAA TA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
17449585 TAAAAAAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 25 0.83
4 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:17451487 original size:23 final size:22
Alignment explanation
Indices: 17451446--17451490 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
17451436 TATTTAGCCA
*
17451446 TGTGATATGGCTTGGTTTTGGT
1 TGTGATATGGCTTGATTTTGGT
*
17451468 TGTGATTATGGTTTGATTTTGGT
1 TGTGA-TATGGCTTGATTTTGGT
17451491 ATATGAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.11, C:0.02, G:0.33, T:0.53
Consensus pattern (22 bp):
TGTGATATGGCTTGATTTTGGT
Found at i:17455642 original size:47 final size:47
Alignment explanation
Indices: 17455574--17455939 Score: 254
Period size: 47 Copynumber: 7.7 Consensus size: 47
17455564 TTTGTGCGCT
17455574 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCGTCAAGATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCAAGATGTGAGCC
* * * * *
17455620 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAA-ACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC--TCAAGATGTGAGCC
* * * *
17455668 AGTGTAAGA-TATGTCTGGGACA-CGCATCGGCCTCGAGAGTGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCAAGA-TGTGAGCC
* * * *
17455715 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCACATATAGA-G-GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTC--A-AGATGTGAGCC
* * * * *
17455761 ACTGTAAGACCATGTTTGGGACATGGCATCGGCACAGATATGTGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCA-AGATGTG--AGCC
* * * *
17455811 AGTGTAAGACCATGTCTGGGACTTGGCATCGGCCTC--GATTTCAATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCAAGATGT---GAGCC
* * *
17455860 AGTGTAAGACCATGTTTGGGACATGGCATCGACT-TA-ATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCAAGAT-G-TGAGCC
*
17455907 AGTGTAAGACCTTGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
17455940 ATTACACCTT
Statistics
Matches: 248, Mismatches: 48, Indels: 47
0.72 0.14 0.14
Matches are distributed among these distances:
45 2 0.01
46 32 0.13
47 103 0.42
48 41 0.17
49 37 0.15
50 31 0.12
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTCAAGATGTGAGCC
Found at i:17455871 original size:99 final size:96
Alignment explanation
Indices: 17455709--17455939 Score: 260
Period size: 96 Copynumber: 2.4 Consensus size: 96
17455699 CTCGAGAGTG
* * *
17455709 TAAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATCGG-CAC-ATAT-AGAGGT-GTCACTGTAA
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCA-A--TAGTCACTGTAA
17455768 GACCATGTTTGGGACATGGCATCGGCACAGATATGTGA
63 GACCATGTTTGGGACATGGCATC-G-ACAGA-ATG-GA
* * *
17455806 -AAGCTAGTGTAAGACCATGTCTGGGACTTGGCATCGGCCTCGATTTCAATAGTCAGTGTAAGAC
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCAATAGTCACTGTAAGAC
**
17455870 CATGTTTGGGACATGGCATCGACTTAATGGA
66 CATGTTTGGGACATGGCATCGACAGAATGGA
* *
17455901 TGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCGGC
1 TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
17455940 ATTACACCTT
Statistics
Matches: 115, Mismatches: 12, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
95 2 0.02
96 50 0.43
97 15 0.13
98 9 0.08
99 34 0.30
100 4 0.03
101 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (96 bp):
TAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCAATAGTCACTGTAAGAC
CATGTTTGGGACATGGCATCGACAGAATGGA
Found at i:17463529 original size:46 final size:47
Alignment explanation
Indices: 17463385--17463700 Score: 225
Period size: 46 Copynumber: 6.6 Consensus size: 47
17463375 TTTGTGCGCT
* * * *
17463385 AGTGTAAGA-CATGTCTGGGACATGCATTGGCCTCAAGATGTGA-CC
1 AGTGTAAGACCATGTCTGGGACAGGCATCGGCCTCGAGATGTAAGCC
* * * * *
17463430 TAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACG-AGAGCT
1 -AGTGTAAGACCATGTCTGGGACA-GGCATCGGCCTCGAGATGTA-AGCC
*
17463479 AGTGTAAGA-CATGTCTGGGACACGCATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACAGGCATCGGCCTCGAGATGTAAGCC
* * ** * *
17463525 AGTGTAAGA-CATGTCTAGGACATGCATCGGCACATATAGAGGT--GTC
1 AGTGTAAGACCATGTCTGGGACAGGCATCGGC-C-TCGAGATGTAAGCC
* *
17463571 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACA-GGCATCGGC-CTCGAGATGT-A-AGCC
* * * * ** ** *
17463621 AGTTTAAGACCATGTTTGGGACATGGCGTTGGCCTCGATTTCAATAGTC
1 AGTGTAAGACCATGTCTGGGACA-GGCATCGGCCTCGAGATGTA-AGCC
17463670 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACA-GGCATCG
17463701 ACTTAATGGA
Statistics
Matches: 213, Mismatches: 43, Indels: 25
0.76 0.15 0.09
Matches are distributed among these distances:
46 70 0.33
47 38 0.18
48 38 0.18
49 32 0.15
50 35 0.16
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACAGGCATCGGCCTCGAGATGTAAGCC
Found at i:17463600 original size:94 final size:94
Alignment explanation
Indices: 17463385--17463700 Score: 287
Period size: 94 Copynumber: 3.3 Consensus size: 94
17463375 TTTGTGCGCT
* * *
17463385 AGTGTAAGACATGTCTGGGACAT-GCATTGGCCTCAAGATGTGA-CCTAGTGTAAGACCATGTTT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCC-AGTGTAAGACCATGTTT
* *
17463448 GGGACATGGCATCGG-CATTGAGACGAGAG-C
65 GGGACATGGCATCGGCCATTCAGA-G-GTGTC
* *
17463478 TAGTGTAAGACATGTCTGGGACA-CGCATCGGCCTCGAGATGTAAGCCAGTGTAAGA-CATGTCT
1 -AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGTTT
*
17463541 AGGACAT-GCATCGGCACATAT-AGAGGTGTC
65 GGGACATGGCATCGGC-CAT-TCAGAGGTGTC
* * *
17463571 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTGAGAGCTAGTTTAAGACCATG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC-CTCGAGATGT-A-AGCCAGTGTAAGACCATG
* *
17463635 TTTGGGACATGGCGTTGGCCTCGATTTCA-A--TAGTC
62 TTTGGGACATGGCATCGG-C-C-A-TTCAGAGGT-GTC
17463670 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG
17463701 ACTTAATGGA
Statistics
Matches: 189, Mismatches: 15, Indels: 31
0.80 0.06 0.13
Matches are distributed among these distances:
92 18 0.10
93 27 0.14
94 69 0.37
95 5 0.03
96 11 0.06
97 12 0.06
98 6 0.03
99 36 0.19
100 3 0.02
101 2 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGTTTG
GGACATGGCATCGGCCATTCAGAGGTGTC
Found at i:17463690 original size:49 final size:50
Alignment explanation
Indices: 17463431--17463750 Score: 221
Period size: 47 Copynumber: 6.7 Consensus size: 50
17463421 GATGTGACCT
* ** * *
17463431 AGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGACG--AGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTAAGAGTC
* * *
17463478 TAGTGTAAGA-CATGTCTGGGACA-CGCATCGGC-CTCGAGATGT-A-AGCC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGTAAGAGTC
* * *
17463525 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCA-C-ATATAG-AGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAT-GTAAGAGTC
*
17463571 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTGAGAG-C
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTAAGAGTC
* * * * *
17463620 TAGTTTAAGACCATGTTTGGGACATGGCGTTGGC-CTCGAT-T-TCAATAGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATATGT-AAGAGTC
** * * *
17463670 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTA-ATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTAAGAGTC
* * *
17463717 AATGTAAGACCTTGTCTGGGACGTGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
17463751 TTACACCTTA
Statistics
Matches: 217, Mismatches: 33, Indels: 43
0.74 0.11 0.15
Matches are distributed among these distances:
44 3 0.01
45 2 0.01
46 55 0.25
47 60 0.28
48 22 0.10
49 35 0.16
50 40 0.18
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (50 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATATGTAAGAGTC
Found at i:17463725 original size:146 final size:140
Alignment explanation
Indices: 17463385--17463750 Score: 339
Period size: 140 Copynumber: 2.6 Consensus size: 140
17463375 TTTGTGCGCT
* * *
17463385 AGTGTAAGACATGTCTGGGACATGCATTGGC-C-TCA-AGATGTGA-CCTAGTGTAAGACCATGT
1 AGTGTAAGACATGTCTAGGACATGCATCGGCACAT-ATAGA-G-GAGCC-AATGTAAGACCATGT
* **
17463446 TTGGGACATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATCGGCC
62 CTGGGACATGGCATCGGCACCGAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATCGGCC
**
17463511 TCGAGATGTAAGCC
127 TCGAGATCAAAGCC
* * *
17463525 AGTGTAAGACATGTCTAGGACATGCATCGGCACATATAGAGGTGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGGCACATATAGAGGAGCCAATGTAAGACCATGTCTGG
* * * * * * *
17463590 GACATGGCATCGGCACCGATATGTGAGAGCTAGTTTAAGACCATGTTTGGGACATGGCGTTGGCC
66 GACATGGCATCGGCACCGAGA--CGAGAGCTAGTGTAAGA-CATGTCTGGGACA-CGCATCGGCC
** *
17463655 TCGATTTCAATAGTC
127 TCGAGATCAA-AGCC
* * * * *
17463670 AGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTAATGGATGAGCCAATGTAAGACCTTGTC
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCGGCACAT-ATAGAGGAGCCAATGTAAGACCATGTC
*
17463733 TGGGACGTGGCATCGGCA
63 TGGGACATGGCATCGGCA
17463751 TTACACCTTA
Statistics
Matches: 186, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
140 66 0.35
141 4 0.02
142 19 0.10
143 12 0.06
144 13 0.07
145 15 0.08
146 52 0.28
147 5 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTAGGACATGCATCGGCACATATAGAGGAGCCAATGTAAGACCATGTCTGG
GACATGGCATCGGCACCGAGACGAGAGCTAGTGTAAGACATGTCTGGGACACGCATCGGCCTCGA
GATCAAAGCC
Found at i:17464309 original size:21 final size:21
Alignment explanation
Indices: 17464285--17464358 Score: 69
Period size: 21 Copynumber: 3.3 Consensus size: 21
17464275 AAGTTGTTAT
17464285 ATGAATACAAGAAGTTATTTC
1 ATGAATACAAGAAGTTATTTC
* *
17464306 ATGAATAGCTAATTAAAAGTTGTTAT-
1 ATGAATA-C--A--AGAAGTTATT-TC
17464332 ATGAATACAAGAAGTTATTTC
1 ATGAATACAAGAAGTTATTTC
17464353 ATGAAT
1 ATGAAT
17464359 GGCTAATTTG
Statistics
Matches: 42, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
20 1 0.02
21 21 0.50
22 1 0.02
23 1 0.02
24 1 0.02
25 1 0.02
26 15 0.36
27 1 0.02
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (21 bp):
ATGAATACAAGAAGTTATTTC
Found at i:17464335 original size:26 final size:23
Alignment explanation
Indices: 17464271--17464340 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 23
17464261 ATGGCTAAAG
17464271 TTAAAAGTTGTTATATGAATACA
1 TTAAAAGTTGTTATATGAATACA
* *
17464294 --AGAAGTTATT-TCATGAATAGCTAA
1 TTAAAAGTTGTTAT-ATGAATA-C--A
17464318 TTAAAAGTTGTTATATGAATACA
1 TTAAAAGTTGTTATATGAATACA
17464341 AGAAGTTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
20 1 0.03
21 15 0.42
22 1 0.03
23 1 0.03
24 1 0.03
25 1 0.03
26 15 0.42
27 1 0.03
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (23 bp):
TTAAAAGTTGTTATATGAATACA
Found at i:17464335 original size:47 final size:47
Alignment explanation
Indices: 17464271--17464366 Score: 183
Period size: 47 Copynumber: 2.0 Consensus size: 47
17464261 ATGGCTAAAG
17464271 TTAAAAGTTGTTATATGAATACAAGAAGTTATTTCATGAATAGCTAA
1 TTAAAAGTTGTTATATGAATACAAGAAGTTATTTCATGAATAGCTAA
*
17464318 TTAAAAGTTGTTATATGAATACAAGAAGTTATTTCATGAATGGCTAA
1 TTAAAAGTTGTTATATGAATACAAGAAGTTATTTCATGAATAGCTAA
17464365 TT
1 TT
17464367 TGTTAATACA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (47 bp):
TTAAAAGTTGTTATATGAATACAAGAAGTTATTTCATGAATAGCTAA
Found at i:17464382 original size:36 final size:36
Alignment explanation
Indices: 17464335--17464407 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
17464325 TTGTTATATG
17464335 AATACAAGAAGTTATTTCATGAATGGCTAATTTGTT
1 AATACAAGAAGTTATTTCATGAATGGCTAATTTGTT
17464371 AATACAAGAAGTTATTTCATGAATGGCTAATTTGTT
1 AATACAAGAAGTTATTTCATGAATGGCTAATTTGTT
17464407 A
1 A
17464408 GTTGTTTTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.38
Consensus pattern (36 bp):
AATACAAGAAGTTATTTCATGAATGGCTAATTTGTT
Found at i:17467186 original size:41 final size:41
Alignment explanation
Indices: 17467089--17467185 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 41
17467079 CGTTTGTAAT
* *
17467089 AAAACGCCGCAAAAAACTAAGCAATAGCGGCGTTTTTGGTC
1 AAAACGCCGCAAAAAACTAAGCAATAGCGGCGCTTTTGGTA
* ** *
17467130 CAAACGCCGTTAAAAACTGAA-CAATAGTGGCGCTTTTGG-A
1 AAAACGCCGCAAAAAACT-AAGCAATAGCGGCGCTTTTGGTA
17467170 AAAACGCCGCAAAAAA
1 AAAACGCCGCAAAAAA
17467186 AGTAATTTAG
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
40 13 0.28
41 31 0.67
42 2 0.04
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.18
Consensus pattern (41 bp):
AAAACGCCGCAAAAAACTAAGCAATAGCGGCGCTTTTGGTA
Found at i:17467863 original size:28 final size:29
Alignment explanation
Indices: 17467809--17467882 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 29
17467799 ATTATTTTGG
17467809 GGTTTAG-GATTTA-GGATCTAGGATTTAA
1 GGTTTAGCG-TTTAGGGATCTAGGATTTAA
* * *
17467837 GGTTTGGCGTTTGGGGATC-AGGGTTTAA
1 GGTTTAGCGTTTAGGGATCTAGGATTTAA
**
17467865 TTTTTAGCGTTTAGGGAT
1 GGTTTAGCGTTTAGGGAT
17467883 AAATATGGGG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
28 31 0.84
29 6 0.16
ACGTcount: A:0.20, C:0.05, G:0.34, T:0.41
Consensus pattern (29 bp):
GGTTTAGCGTTTAGGGATCTAGGATTTAA
Found at i:17468147 original size:501 final size:492
Alignment explanation
Indices: 17467439--17468567 Score: 2037
Period size: 501 Copynumber: 2.3 Consensus size: 492
17467429 CCCAAAAGCA
*
17467439 TAAATTATGAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
1 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
17467504 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
66 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
*
17467569 AATTAAAGTTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTATAATTACACATTAAA
131 AATTAAAGTTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACACATTAAA
17467634 TCGAAATTCATATATAATTCTGAGACT-TATCTCTATCAAAATTTAGGTGTGTACATATAATTAA
196 TCGAAATTCATATATAATTCTGAGA-TGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAA
*
17467698 ATATCTAATTATGGTTTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTT
260 ATATCTAATTATGGTCTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAG-T
*
17467763 TAGGGGATAGGGGATAGGGGTTATGATATAATGTTCATTATTTTGGGGTTTAGGATTTAGGATCT
324 T------TAGGGGATAGGGGTTATGATATAATGTTCATTATTTT-GGGTTTA-GAATTAGGATCT
17467828 AGGATTTAAGGTTTGGCGTTTGGGGATCAGGGTTTAATTTTTAGCGTTTAGGGATAAATATGGGG
381 AGGATTTAAGGTTTGGCGTTTGGGGATCAGGGTTTAATTTTTAGCGTTTAGGGATAAATATGGGG
*
17467893 ATCAGGGTACAATTGTATATATAAACTTTAATTTGATCTAGTTCTTG
446 ATCAGGGTAAAATTGTATATATAAACTTTAATTTGATCTAGTTCTTG
17467940 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
1 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
17468005 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
66 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
*
17468070 AATTAAAGTTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACATATTAAA
131 AATTAAAGTTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACACATTAAA
17468135 TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
196 TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
17468200 TATCTAATTATGGTCTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
261 TATCTAATTATGGTCTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
*
17468265 AGGGGATAGGGGTTATGATATAATGTTCATTATTTTGGGTTTAGAATTATGATCTAGGATTTAAG
326 AGGGGATAGGGGTTATGATATAATGTTCATTATTTTGGGTTTAGAATTAGGATCTAGGATTTAAG
* *
17468330 GTTTGGTGTTTGGGGATCAGGGTTTAATTTTTAGCTTTTAGGGATAAATATGGGGATCAGGGTAA
391 GTTTGGCGTTTGGGGATCAGGGTTTAATTTTTAGCGTTTAGGGATAAATATGGGGATCAGGGTAA
*
17468395 AATTGTATATATGAACTTTAATTTGATCTAGTTCTTG
456 AATTGTATATATAAACTTTAATTTGATCTAGTTCTTG
*
17468432 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATTTATTGCATACATAAATATT
1 TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
*
17468497 TATATTTATTCAATAT-AAAATATATTGATGTATTTATTTTTTAAAATGTCTATGATTAAATCAA
66 TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
*
17468561 AAATAAA
131 AATTAAA
17468568 AAACTTAAAA
Statistics
Matches: 614, Mismatches: 13, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
491 53 0.09
492 198 0.32
493 7 0.01
494 37 0.06
500 3 0.00
501 316 0.51
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (492 bp):
TAAATTATTAACACAATTATTGATATAACATCATTTTATATTTATATATTGCATACATAAATATT
TATATTTATTCAATATAAAAATATATTGATGTATTTATTTTTTAAAATGTGTATGATTAAATCAA
AATTAAAGTTTCAATTATACATTTAAACCACAATTAGAATTTCACATCTACAATTACACATTAAA
TCGAAATTCATATATAATTCTGAGATGTATCTCTATCAAAATTTAGGTGTGTACATATAATTAAA
TATCTAATTATGGTCTAAGGGTTGGGGTTAAGGGTTTATGGTTTATGTTTTATGGTTTAGAGTTT
AGGGGATAGGGGTTATGATATAATGTTCATTATTTTGGGTTTAGAATTAGGATCTAGGATTTAAG
GTTTGGCGTTTGGGGATCAGGGTTTAATTTTTAGCGTTTAGGGATAAATATGGGGATCAGGGTAA
AATTGTATATATAAACTTTAATTTGATCTAGTTCTTG
Found at i:17472768 original size:31 final size:30
Alignment explanation
Indices: 17472728--17472786 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 30
17472718 TATTTTTATA
17472728 TTTAATCT-AATTTTTATTATTTATTTTAGT
1 TTTAATCTAAATTTTTATT-TTTATTTTAGT
17472758 TTTAATTCTAAATTTTTATTTTTATTTTA
1 TTTAA-TCTAAATTTTTATTTTTATTTTA
17472787 ATATTTAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
30 5 0.19
31 12 0.44
32 10 0.37
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (30 bp):
TTTAATCTAAATTTTTATTTTTATTTTAGT
Done.