Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 79 of 325
Found at i:22228216 original size:2 final size:2
Alignment explanation
Indices: 22228209--22228244 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22228199 AATCGAGAAG
22228209 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22228245 TGAAGGAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22232349 original size:13 final size:13
Alignment explanation
Indices: 22232328--22232357 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22232318 TCACATGGCT
*
22232328 GTATTGCACGACC
1 GTATCGCACGACC
22232341 GTATCGCACGACC
1 GTATCGCACGACC
22232354 GTAT
1 GTAT
22232358 TTCATCCCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.30, G:0.23, T:0.23
Consensus pattern (13 bp):
GTATCGCACGACC
Found at i:22235048 original size:23 final size:21
Alignment explanation
Indices: 22235013--22235056 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
22235003 AATACAACAC
*
22235013 TAAAAAGGTATATACATAATATA
1 TAAAAAGGCATAT--ATAATATA
*
22235036 TAAAAATGCATATATAATATA
1 TAAAAAGGCATATATAATATA
22235057 ATGTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
TAAAAAGGCATATATAATATA
Found at i:22235252 original size:27 final size:26
Alignment explanation
Indices: 22235194--22235253 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
22235184 CATAGTATAT
* *
22235194 ATATACATATAATATAATTATTAAGA
1 ATATACATACAATATAAGTATTAAGA
*
22235220 AAATACATACAATATATAGTATTAAGA
1 ATATACATACAATATA-AGTATTAAGA
22235247 ATATACA
1 ATATACA
22235254 CAATACGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (26 bp):
ATATACATACAATATAAGTATTAAGA
Found at i:22235525 original size:16 final size:17
Alignment explanation
Indices: 22235487--22235527 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
22235477 AATCATAGGC
22235487 ATAATA-AT-AAATATA
1 ATAATATATGAAATATA
22235502 ATAATATATGAAAT-TA
1 ATAATATATGAAATATA
*
22235518 ATACTATATG
1 ATAATATATG
22235528 TAAAAATATG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 13 0.57
17 4 0.17
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (17 bp):
ATAATATATGAAATATA
Found at i:22235869 original size:12 final size:13
Alignment explanation
Indices: 22235813--22235872 Score: 54
Period size: 12 Copynumber: 4.6 Consensus size: 13
22235803 ATATTTAAAA
*
22235813 TAATACTAAATA-
1 TAATAATAAATAG
22235825 TAAT-ATAAAATAG
1 TAATAAT-AAATAG
22235838 TAATAATAATAATAG
1 TAATAAT-A-AATAG
*
22235853 CAATAATAAAT-G
1 TAATAATAAATAG
22235865 TAATAATA
1 TAATAATA
22235873 TATAAAAGAT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
11 1 0.02
12 17 0.41
13 7 0.17
14 5 0.12
15 11 0.27
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (13 bp):
TAATAATAAATAG
Found at i:22235886 original size:29 final size:29
Alignment explanation
Indices: 22235824--22235905 Score: 71
Period size: 29 Copynumber: 2.9 Consensus size: 29
22235814 AATACTAAAT
*
22235824 ATAAT-ATAAAATAGTAATAATA-ATAATAG
1 ATAATAAT-AAAT-GTAATAATATATAAAAG
*
22235853 -CAATAATAAATGTAATAATATATAAAAG
1 ATAATAATAAATGTAATAATATATAAAAG
* * * *
22235881 ATAATACTATATATAAAAATATATA
1 ATAATAATAAATGTAATAATATATA
22235906 TATGCATATA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
27 9 0.21
28 13 0.30
29 21 0.49
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (29 bp):
ATAATAATAAATGTAATAATATATAAAAG
Found at i:22236633 original size:31 final size:31
Alignment explanation
Indices: 22236583--22236644 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
22236573 AAAGGTAAAA
*
22236583 TTTTATTTTTTTTATTTTTTG-TAT-TATAT
1 TTTTATTTTTTATATTTTTTGATATATATAT
22236612 TTTTATATTTTTATATGTTTTTGATATATATAT
1 TTTTAT-TTTTTATAT-TTTTTGATATATATAT
22236645 GTGGAAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 6 0.21
30 8 0.29
31 6 0.21
32 3 0.11
33 5 0.18
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (31 bp):
TTTTATTTTTTATATTTTTTGATATATATAT
Found at i:22237933 original size:88 final size:86
Alignment explanation
Indices: 22237652--22237944 Score: 272
Period size: 88 Copynumber: 3.3 Consensus size: 86
22237642 TGTGATCCTG
* * * * * * *
22237652 AGCTCAACTCATTTCTTGCAATCTGAATT-GACTCTTTAAAACAAACATTAAAACAGAAATTGAA
1 AGCTCAACTCATCTCTCGCAATATGAGTTGGTC-CTTTAAAACAAACATAAAAATAGAAATTGAA
22237716 AATAGCTCAGCACGTGAGCCAA
65 AATAGCTCAGCACGTGAGCCAA
* * * * ** * *
22237738 GGCTCAACTCAACTCTCGCAATATG-GATTGGTCCTTTTGAAACTTAATTTGAAAAGTAG-ATTT
1 AGCTCAACTCATCTCTCGCAATATGAG-TTGGTCC-TTTAAAAC-AAACAT-AAAAATAGAAATT
* * *
22237801 CAAAAATACCTC-GTCATGTGA-CCAGA
62 -GAAAATAGCTCAG-CACGTGAGCCA-A
* * *
22237827 GGCTCAACTCACCTCTCGCAATATGAGTTGGTCCTTTAAAAACAGACAGTAAAAATAGAAATTGA
1 AGCTCAACTCATCTCTCGCAATATGAGTTGGTCCTTT-AAAACAAACA-TAAAAATAGAAATTGA
22237892 AAATAGCTCAGCACGTGAGCCAA
64 AAATAGCTCAGCACGTGAGCCAA
22237915 AGCTCAACTCATCTCTCGCAATATGAGTTG
1 AGCTCAACTCATCTCTCGCAATATGAGTTG
22237945 ATTTTTGAAA
Statistics
Matches: 162, Mismatches: 31, Indels: 26
0.74 0.14 0.12
Matches are distributed among these distances:
86 23 0.14
87 9 0.06
88 65 0.40
89 64 0.40
90 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (86 bp):
AGCTCAACTCATCTCTCGCAATATGAGTTGGTCCTTTAAAACAAACATAAAAATAGAAATTGAAA
ATAGCTCAGCACGTGAGCCAA
Found at i:22237956 original size:88 final size:85
Alignment explanation
Indices: 22237653--22238204 Score: 250
Period size: 89 Copynumber: 6.4 Consensus size: 85
22237643 GTGATCCTGA
** * * * * * *
22237653 GCTCAACTCATTTCTTGCAATCTGAATTGACTCTTTAAAACAAACATTAAAACAGAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAACAGACATAAAAACAGAAATTGAAAA
*
22237718 TAGCTCAGCACGTGAGCCAAG
65 TACCTCAGCACGTGAGCCAAG
* * * ** ** *
22237739 GCTCAACTCAACTCTCGCAATATG-GATTGGTCCTTTTGAAACTTA-ATTTGAAA-AGTAGATTT
1 GCTCAACTCACCTCTCGCAATATGAG-TTGAT--TTTTAAAACAGACA-TAAAAACAG-A-AATT
* *
22237801 CAAAAATACCTC-GTCATGTGA-CCAGAG
60 -GAAAATACCTCAG-CACGTGAGCCA-AG
* * *
22237828 GCTCAACTCACCTCTCGCAATATGAGTTGGTCCTTTAAAAACAGACAGTAAAAATAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGAT--TTTTAAAACAGACA-TAAAAACAGAAATTGAA
* *
22237893 AATAGCTCAGCACGTGAGCCAAA
63 AATACCTCAGCACGTGAGCCAAG
* * * * * *
22237916 GCTCAACTCATCTCTCGCAATATGAGTTGATTTTTGAAAAATAAAAATTGAAAAAAAAAACAGAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT--AAAACAGACA-T----AAAAACAGA-AA
* * *
22237981 ACTGAAAATACCTCAGCATGTGAGCCGAG
58 T-TGAAAATACCTCAGCACGTGAGCCAAG
* * ** *
22238010 GCTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAAGCAGAAATTGAAAAGTAGGAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTT-AAAA-CAGACA-T-AAAAACAGAAATT
* * * *
22238075 G--AATTCCTTAG--CGTG-CCCTGAG
60 GAAAATACCTCAGCACGTGAGCC-AAG
* * *
22238097 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT------GAC----AAACAGAATTTGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAGACATAAAAACAGAAATTGAAAAT
* *
22238152 ACCTCAGCA--TG-TCCTGAG
66 ACCTCAGCACGTGAGCC-AAG
22238170 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
22238205 TTGAAAGACA
Statistics
Matches: 367, Mismatches: 69, Indels: 73
0.72 0.14 0.14
Matches are distributed among these distances:
71 8 0.02
73 49 0.13
77 2 0.01
85 6 0.02
86 31 0.08
87 48 0.13
88 60 0.16
89 70 0.19
90 7 0.02
91 4 0.01
92 9 0.02
93 7 0.02
94 51 0.14
95 4 0.01
96 11 0.03
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (85 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAACAGACATAAAAACAGAAATTGAAAAT
ACCTCAGCACGTGAGCCAAG
Found at i:22239395 original size:26 final size:26
Alignment explanation
Indices: 22239366--22239418 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22239356 TCAAACATGC
22239366 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
22239392 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
22239418 A
1 A
22239419 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:22247834 original size:26 final size:26
Alignment explanation
Indices: 22247798--22247853 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
22247788 TGAAATTCCC
*
22247798 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
22247824 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
22247850 ATCA
1 ATCA
22247854 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:22248349 original size:76 final size:75
Alignment explanation
Indices: 22248191--22248368 Score: 234
Period size: 76 Copynumber: 2.4 Consensus size: 75
22248181 GGGCGTTACA
** * * * **
22248191 CAACTCACCTCTCATAATATGAGTTGA--TTTTTGACAAACAGAAATCGAAAATACCTCAGCGTG
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATCAAAAATACCTCAACGCA
22248254 ACCTGAGCCT
66 ACCTGAGCCT
* * *
22248264 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAAATAGGAATTAAAAATACCTCAACGC
1 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAAACAGAAATCAAAAATACCTCAACGC
*
22248329 AACCTGAGGCT
65 AACCTGAGCCT
22248340 CAACTCACCTCTCGCAATATGAGTTGATT
1 CAACTCACCTCTCGCAATATGAGTTGATT
22248369 GATTCTTTTC
Statistics
Matches: 91, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
73 25 0.27
75 6 0.07
76 60 0.66
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (75 bp):
CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATCAAAAATACCTCAACGCA
ACCTGAGCCT
Found at i:22252171 original size:41 final size:41
Alignment explanation
Indices: 22252109--22252343 Score: 285
Period size: 41 Copynumber: 5.8 Consensus size: 41
22252099 TCGGGGTTTA
22252109 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
*
22252150 AATCTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * *
22252191 AA-CCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
22252231 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
* * * * * * * * *
22252272 AAT-CGAACCTAGTTTCGAAGGGCCTTCGGGCCAATTTCAT
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
22252312 AATCCGAGCTTGGTCTCGAAGGGCATTTTGAG
1 AATCCGAGCTTGGTCTCGAAGGGC-TTTTGAG
22252344 TCAGCGCTAA
Statistics
Matches: 157, Mismatches: 34, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 62 0.39
41 91 0.58
42 4 0.03
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (41 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCAT
Found at i:22252259 original size:81 final size:81
Alignment explanation
Indices: 22252124--22252343 Score: 368
Period size: 81 Copynumber: 2.7 Consensus size: 81
22252114 GAGCTTGGTC
* * * * *
22252124 TCGAAGGGCTTTTGAGCCAGTGTCATAATCTGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTC
22252189 ATAACCGAACCTAGTT
66 ATAACCGAACCTAGTT
22252205 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTC
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTC
*
22252270 ATAATCGAACCTAGTT
66 ATAACCGAACCTAGTT
*
22252286 TCGAAGGGCCTTCGGGCCAATTTCATAATCCGAGCTTGGTCTCGAAGGGCATTTTGAG
1 TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGC-TTTTGAG
22252344 TCAGCGCTAA
Statistics
Matches: 131, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
81 124 0.95
82 7 0.05
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (81 bp):
TCGAAGGGCCTTCGGGCCAATGTCATAATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTC
ATAACCGAACCTAGTT
Found at i:22252331 original size:122 final size:122
Alignment explanation
Indices: 22252109--22252335 Score: 321
Period size: 122 Copynumber: 1.9 Consensus size: 122
22252099 TCGGGGTTTA
* * *
22252109 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCTGAGCTTGGTCTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCTGAACCTAGTCTCGAAGGGC
* * * *
22252174 TTTTGAGCCAGTGTCATAACCGAACCTAGTTTCGAAGGGCCTTCGGGCCAATGTCAT
66 CTTCGAGCCAATGTCATAACCGAACCTAGTCTCGAAGGGCCTTCGGGCCAATGTCAT
*
22252231 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATC-GAACCTAGTTTCGAAGGGC
1 AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCTGAACCTAGTCTCGAAGGGC
* * * * *
22252295 CTTCGGGCCAATTTCATAATCCGAGCTTGGTCTCGAAGGGC
66 CTTCGAGCCAATGTCATAA-CCGAACCTAGTCTCGAAGGGC
22252336 ATTTTGAGTC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
121 29 0.32
122 62 0.68
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (122 bp):
AATCCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGTCATAATCTGAACCTAGTCTCGAAGGGC
CTTCGAGCCAATGTCATAACCGAACCTAGTCTCGAAGGGCCTTCGGGCCAATGTCAT
Found at i:22259204 original size:168 final size:168
Alignment explanation
Indices: 22258965--22259301 Score: 665
Period size: 168 Copynumber: 2.0 Consensus size: 168
22258955 CTTGACTGTG
22258965 GTTCCACAACGTCAAGGCTCATAGGTCCCTTTCCTTTTGCTAGAGCTGACATCATTTCCATCATC
1 GTTCCACAACGTCAAGGCTCATAGGTCCCTTTCCTTTTGCTAGAGCTGACATCATTTCCATCATC
22259030 TTGGCCATTTGGTCCCTTTGTTCGAGCGATTCTTCTCGAGATCTCACCATTAAGTCTCTTGTCTC
66 TTGGCCATTTGGTCCCTTTGTTCGAGCGATTCTTCTCGAGATCTCACCATTAAGTCTCTTGTCTC
22259095 TTACTGCGACTTGGTCAACTGCTCTTGTAATTCCCTTT
131 TTACTGCGACTTGGTCAACTGCTCTTGTAATTCCCTTT
*
22259133 GTTCCACAACGTCAAGGCTCATAGGTCCCTTTCCTTTTGCTAGAGCTGACATCATTTCCATCATT
1 GTTCCACAACGTCAAGGCTCATAGGTCCCTTTCCTTTTGCTAGAGCTGACATCATTTCCATCATC
22259198 TTGGCCATTTGGTCCCTTTGTTCGAGCGATTCTTCTCGAGATCTCACCATTAAGTCTCTTGTCTC
66 TTGGCCATTTGGTCCCTTTGTTCGAGCGATTCTTCTCGAGATCTCACCATTAAGTCTCTTGTCTC
22259263 TTACTGCGACTTGGTCAACTGCTCTTGTAATTCCCTTT
131 TTACTGCGACTTGGTCAACTGCTCTTGTAATTCCCTTT
22259301 G
1 G
22259302 GACTCTTTCC
Statistics
Matches: 168, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
168 168 1.00
ACGTcount: A:0.17, C:0.28, G:0.17, T:0.38
Consensus pattern (168 bp):
GTTCCACAACGTCAAGGCTCATAGGTCCCTTTCCTTTTGCTAGAGCTGACATCATTTCCATCATC
TTGGCCATTTGGTCCCTTTGTTCGAGCGATTCTTCTCGAGATCTCACCATTAAGTCTCTTGTCTC
TTACTGCGACTTGGTCAACTGCTCTTGTAATTCCCTTT
Found at i:22263332 original size:27 final size:27
Alignment explanation
Indices: 22263260--22263337 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 27
22263250 ATGATAATAG
* *
22263260 TATTACAAAGTATATACATAGTATAATGT
1 TATTA-AAA-TATATACATAATATAAAGT
*
22263289 TA--AAAATACATACATAATATAAAGT
1 TATTAAAATATATACATAATATAAAGT
* *
22263314 TATTAAAATATATATATAAGATAA
1 TATTAAAATATATACATAATATAA
22263338 TATGTAAGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 18 0.44
26 3 0.07
27 18 0.44
29 2 0.05
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (27 bp):
TATTAAAATATATACATAATATAAAGT
Found at i:22263436 original size:23 final size:21
Alignment explanation
Indices: 22263401--22263444 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
22263391 AATACAACAC
*
22263401 TAAAAAGGTATATACATAATATA
1 TAAAAAGGCATAT--ATAATATA
*
22263424 TAAAAATGCATATATAATATA
1 TAAAAAGGCATATATAATATA
22263445 ATGTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
TAAAAAGGCATATATAATATA
Found at i:22263623 original size:43 final size:42
Alignment explanation
Indices: 22263530--22263624 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 42
22263520 ATGTACCTGT
*
22263530 ATATATATATATAAAATACATAATAATATTAAAAATACGTAC
1 ATATATATATATAAAATACATAATAATATTAAAAATACATAC
*
22263572 ATAGTATATATATACATATA-AT-ATAATTATTAAGAAAATACATAC
1 ATA-TATATATATA-AAATACATAATAA-TATT-A-AAAATACATAC
22263617 A-ATATATA
1 ATATATATA
22263625 GTATTAAGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
42 7 0.15
43 22 0.48
44 6 0.13
45 11 0.24
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.35
Consensus pattern (42 bp):
ATATATATATATAAAATACATAATAATATTAAAAATACATAC
Found at i:22263639 original size:27 final size:26
Alignment explanation
Indices: 22263581--22263640 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
22263571 CATAGTATAT
* *
22263581 ATATACATATAATATAATTATTAAGA
1 ATATACATACAATATAAGTATTAAGA
*
22263607 AAATACATACAATATATAGTATTAAGA
1 ATATACATACAATATA-AGTATTAAGA
22263634 ATATACA
1 ATATACA
22263641 CGATACGTAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 14 0.48
27 15 0.52
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (26 bp):
ATATACATACAATATAAGTATTAAGA
Found at i:22263911 original size:16 final size:17
Alignment explanation
Indices: 22263873--22263913 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
22263863 AATCATAGGC
22263873 ATAATA-AT-AAATATA
1 ATAATATATGAAATATA
22263888 ATAATATATGAAAT-TA
1 ATAATATATGAAATATA
*
22263904 ATACTATATG
1 ATAATATATG
22263914 TAAAAAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 6 0.26
16 13 0.57
17 4 0.17
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.37
Consensus pattern (17 bp):
ATAATATATGAAATATA
Found at i:22272897 original size:24 final size:29
Alignment explanation
Indices: 22272846--22272901 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 29
22272836 CGGATGTCCT
22272846 AATTAAATTAACAACTAATATGCAAATGA
1 AATTAAATTAACAACTAATATGCAAATGA
22272875 AATTAAA-TAA-AA-TAA-ATGC-AATGA
1 AATTAAATTAACAACTAATATGCAAATGA
22272899 AAT
1 AAT
22272902 GTTTTAGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.30
25 4 0.15
26 3 0.11
27 2 0.07
28 3 0.11
29 7 0.26
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (29 bp):
AATTAAATTAACAACTAATATGCAAATGA
Found at i:22273221 original size:56 final size:56
Alignment explanation
Indices: 22273153--22273266 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
22273143 TGCAAAGTAA
*
22273153 CAGGGACGGGTTAGGTTTGAAACAATTTAATTACATAAATCTAATGTTATCCAAGG
1 CAGGGACGGGTTAGGTTTAAAACAATTTAATTACATAAATCTAATGTTATCCAAGG
*
22273209 CAGGGACTGGTTAGGTTTAAAACAATTTAATTACATAAATCTAATGTTATCCAAGG
1 CAGGGACGGGTTAGGTTTAAAACAATTTAATTACATAAATCTAATGTTATCCAAGG
22273265 CA
1 CA
22273267 ATAGTGTTCT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (56 bp):
CAGGGACGGGTTAGGTTTAAAACAATTTAATTACATAAATCTAATGTTATCCAAGG
Found at i:22274378 original size:56 final size:57
Alignment explanation
Indices: 22274301--22274411 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 57
22274291 CCTATTTGTA
22274301 TTTTAATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGATC
1 TTTTAATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGATC
* *
22274358 TTTT-ATAGAATGATCGTGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGA
1 TTTTAATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGA
22274412 AAAGATCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
56 48 0.92
57 4 0.08
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.43
Consensus pattern (57 bp):
TTTTAATAGAAGGATCATGATTAAAGTTTACTATGATTATTGTTGAAATTCCTGATC
Found at i:22279951 original size:21 final size:21
Alignment explanation
Indices: 22279916--22279972 Score: 89
Period size: 21 Copynumber: 2.8 Consensus size: 21
22279906 TACTTGAAGC
*
22279916 AGGGC-ACACGTCCGTATGGA
1 AGGGCAACACGCCCGTATGGA
22279936 AGGGCAACACGCCCGTATGGA
1 AGGGCAACACGCCCGTATGGA
*
22279957 AGGGCAACACCCCCGT
1 AGGGCAACACGCCCGT
22279973 GTGGTCATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.26, C:0.32, G:0.32, T:0.11
Consensus pattern (21 bp):
AGGGCAACACGCCCGTATGGA
Found at i:22281215 original size:49 final size:48
Alignment explanation
Indices: 22281111--22281240 Score: 165
Period size: 49 Copynumber: 2.6 Consensus size: 48
22281101 GTTAAGATGC
* *
22281111 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGTGAGG
1 CGATGCCATGTCCCAGACA-GGTCTTACATTGGCTCTCATATAGTGAGG
* *
22281160 CTGATGCCATGTCCTAGACAGGTCTTACATTGGCTCTCATTTA-TCG-GTG
1 C-GATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATATAGT-GAG-G
22281209 TCGATGCCATGTCCCAGACAGGTCTTACATTG
1 -CGATGCCATGTCCCAGACAGGTCTTACATTG
22281241 ACACACAACA
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
48 2 0.03
49 52 0.72
50 18 0.25
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.31
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACAGGTCTTACATTGGCTCTCATATAGTGAGG
Found at i:22284772 original size:22 final size:21
Alignment explanation
Indices: 22284747--22284855 Score: 98
Period size: 20 Copynumber: 5.2 Consensus size: 21
22284737 AAGTTAACAG
*
22284747 AATGCCACAAATGCCATATTAA
1 AATGCCACAAA-GCCATATCAA
* ** *
22284769 AATGTCACAAAG-GTTAACAA
1 AATGCCACAAAGCCATATCAA
22284789 AATGCCACAAAAGCCATATCAA
1 AATGCCAC-AAAGCCATATCAA
* *
22284811 AATGCCACAAAGAC-TAACAA
1 AATGCCACAAAGCCATATCAA
* *
22284831 AATGCCACAAAGGC-TAACAA
1 AATGCCACAAAGCCATATCAA
22284851 AATGC
1 AATGC
22284856 GCCATAAAGG
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
20 40 0.55
21 10 0.14
22 23 0.32
ACGTcount: A:0.50, C:0.23, G:0.12, T:0.16
Consensus pattern (21 bp):
AATGCCACAAAGCCATATCAA
Found at i:22284798 original size:42 final size:42
Alignment explanation
Indices: 22284739--22284841 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 42
22284729 TATCCAAAAA
* * * *
22284739 GTTAACAGAATGCCACAAATGCCATATTAAAATGTCACAAAG
1 GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
22284781 GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
1 GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
**
22284823 ACTAACAAAATGCCACAAA
1 GTTAACAAAATGCCACAAA
22284842 GGCTAACAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.50, C:0.22, G:0.12, T:0.17
Consensus pattern (42 bp):
GTTAACAAAATGCCACAAAAGCCATATCAAAATGCCACAAAG
Found at i:22284866 original size:22 final size:20
Alignment explanation
Indices: 22284767--22284855 Score: 115
Period size: 20 Copynumber: 4.3 Consensus size: 20
22284757 ATGCCATATT
* *
22284767 AAAATGTCACAAAGGTTAAC
1 AAAATGCCACAAAGGCTAAC
* *
22284787 AAAATGCCACAAAAGCCATATC
1 AAAATGCCAC-AAAGGC-TAAC
*
22284809 AAAATGCCACAAAGACTAAC
1 AAAATGCCACAAAGGCTAAC
22284829 AAAATGCCACAAAGGCTAAC
1 AAAATGCCACAAAGGCTAAC
22284849 AAAATGC
1 AAAATGC
22284856 GCCATAAAGG
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
20 38 0.63
21 9 0.15
22 13 0.22
ACGTcount: A:0.52, C:0.22, G:0.12, T:0.13
Consensus pattern (20 bp):
AAAATGCCACAAAGGCTAAC
Found at i:22287411 original size:46 final size:46
Alignment explanation
Indices: 22287361--22287536 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
22287351 TGGTTGAGCA
22287361 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22287407 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22287452 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22287500 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22287537 GAGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22287517 original size:93 final size:93
Alignment explanation
Indices: 22287358--22287529 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22287348 GGATGGTTGA
* *
22287358 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22287423 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22287451 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22287516 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
22287530 CTTATGGGAG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22301683 original size:24 final size:24
Alignment explanation
Indices: 22301656--22301702 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
22301646 TACTTTGGCC
*
22301656 CGTTTCTCGTTCCTTTTGCTCTCT
1 CGTTTCTCATTCCTTTTGCTCTCT
22301680 CGTTTCTCATTCCTTTTGCTCTC
1 CGTTTCTCATTCCTTTTGCTCTC
22301703 CTATGCTCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.02, C:0.34, G:0.11, T:0.53
Consensus pattern (24 bp):
CGTTTCTCATTCCTTTTGCTCTCT
Found at i:22311525 original size:44 final size:44
Alignment explanation
Indices: 22311477--22311571 Score: 183
Period size: 44 Copynumber: 2.2 Consensus size: 44
22311467 AAATAGAGAG
22311477 TTAACTTTTAACCCAAGCACTAATTTCTTTGAGTTGTTTTTAGT
1 TTAACTTTTAACCCAAGCACTAATTTCTTTGAGTTGTTTTTAGT
22311521 TTAACTTTTAACCCAAGCACTAATTTCTTTGAGTTGTTTTTAGT
1 TTAACTTTTAACCCAAGCACTAATTTCTTTGAGTTGTTTTTAGT
22311565 TT-ACTTT
1 TTAACTTT
22311572 CAGTACAAGA
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 5 0.10
44 46 0.90
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.49
Consensus pattern (44 bp):
TTAACTTTTAACCCAAGCACTAATTTCTTTGAGTTGTTTTTAGT
Found at i:22316870 original size:21 final size:17
Alignment explanation
Indices: 22316830--22316871 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
22316820 TTATGTGTAT
22316830 AGTAAGTAAAATTTTAA
1 AGTAAGTAAAATTTTAA
22316847 AGTAAGTAAAATTTTAA
1 AGTAAGTAAAATTTTAA
*
22316864 GGTAAGTA
1 AGTAAGTA
22316872 TCAATATTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (17 bp):
AGTAAGTAAAATTTTAA
Found at i:22317221 original size:28 final size:28
Alignment explanation
Indices: 22317168--22317251 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
22317158 CACTTTGTGC
22317168 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
22317197 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
22317225 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
22317252 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:22317263 original size:23 final size:24
Alignment explanation
Indices: 22317172--22317265 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
22317162 TTGTGCTATT
22317172 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
22317199 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
22317229 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
22317252 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
22317266 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:22326240 original size:38 final size:38
Alignment explanation
Indices: 22326110--22326238 Score: 195
Period size: 38 Copynumber: 3.4 Consensus size: 38
22326100 GCAGGCTATA
*
22326110 TGCTGGAATTATATCCGGGTTAAATCCCACAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCACAGGCTTCG
* **
22326148 TGCTGGTAATATATCCGGGTTAAATCCTGCAGGCTTCG
1 TGCTGGTATTATATCCGGGTTAAATCCCACAGGCTTCG
* * *
22326186 TGCTGGTATTATATCTGGGTTAAATCCCACAGGCCTAG
1 TGCTGGTATTATATCCGGGTTAAATCCCACAGGCTTCG
22326224 TGCTGGTATTATATC
1 TGCTGGTATTATATC
22326239 TGAGCTTAAA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 81 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33
Consensus pattern (38 bp):
TGCTGGTATTATATCCGGGTTAAATCCCACAGGCTTCG
Found at i:22328991 original size:40 final size:41
Alignment explanation
Indices: 22328900--22329009 Score: 129
Period size: 40 Copynumber: 2.7 Consensus size: 41
22328890 ATAACCACAT
* *
22328900 GCACGAATGCCCTCGGGTCTTAGCCCGGA-TAGAACGACTT
1 GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
*
22328940 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAG-TC-ACTA
1 GCACGAATGCCTTCGGGTCTTAGCCCGGAT-TAGAACGACTA
* *
22328980 GCAC-AATTGCCTTTGGGTCTTAACCCGGAT
1 GCACGAA-TGCCTTCGGGTCTTAGCCCGGAT
22329010 ATAATTTCCA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
39 2 0.03
40 56 0.90
41 1 0.02
42 3 0.05
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (41 bp):
GCACGAATGCCTTCGGGTCTTAGCCCGGATTAGAACGACTA
Found at i:22330306 original size:20 final size:20
Alignment explanation
Indices: 22330281--22330318 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22330271 GGATGAACAC
22330281 TTTTCTTCCTTTCTTTTTTT
1 TTTTCTTCCTTTCTTTTTTT
* *
22330301 TTTTCTTTCTTTGTTTTT
1 TTTTCTTCCTTTCTTTTT
22330319 GTTTCTCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTCTTCCTTTCTTTTTTT
Found at i:22330308 original size:16 final size:18
Alignment explanation
Indices: 22330289--22330324 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
22330279 ACTTTTCTTC
22330289 CTTTCTTT-TTTTT-TTT
1 CTTTCTTTGTTTTTGTTT
22330305 CTTTCTTTGTTTTTGTTT
1 CTTTCTTTGTTTTTGTTT
22330323 CT
1 CT
22330325 CTCATGTACG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 5 0.28
18 5 0.28
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.81
Consensus pattern (18 bp):
CTTTCTTTGTTTTTGTTT
Found at i:22337809 original size:40 final size:40
Alignment explanation
Indices: 22337750--22337957 Score: 202
Period size: 40 Copynumber: 5.2 Consensus size: 40
22337740 CAATTGAATG
* * * *
22337750 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
22337790 ATATCCGGGTTAAGACCCGAAGGCCA-TTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTTGTGCAAGTAATT
* * **
22337830 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * **
22337870 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
* * * **
22337910 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
22337950 ATATCCGG
1 ATATCCGG
22337958 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
39 2 0.01
40 136 0.97
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTAATT
Found at i:22337888 original size:80 final size:80
Alignment explanation
Indices: 22337752--22337957 Score: 236
Period size: 80 Copynumber: 2.6 Consensus size: 80
22337742 ATTGAATGAT
* * ** * * *
22337752 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATATCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
22337816 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
22337832 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
22337897 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
22337912 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
22337958 TTGTATTCCG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
79 2 0.02
80 103 0.96
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:22346013 original size:38 final size:39
Alignment explanation
Indices: 22345970--22346097 Score: 136
Period size: 40 Copynumber: 3.3 Consensus size: 39
22345960 CGGAATACAA
22345970 CCGGATATAACCACGT-GCACGAATGCCTTC-GGTCTTAG
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAG
* ** *
22346008 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAG
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAG
* * *
22346047 CCCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 -CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTT-AG
22346088 CCGGATATAA
1 CCGGATATAA
22346098 TTTCCAGCAT
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
37 1 0.01
38 25 0.34
39 10 0.14
40 36 0.49
41 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAG
Found at i:22346112 original size:40 final size:40
Alignment explanation
Indices: 22345970--22346131 Score: 127
Period size: 40 Copynumber: 4.1 Consensus size: 40
22345960 CGGAATACAA
**
22345970 CCGGATATAACCACGTGCACGAA-TGCCTTC-GGTCTTAG-
1 CCGGATATAACCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* **
22346008 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* * * *
22346048 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
*** * * *
22346088 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
22346128 CCGG
1 CCGG
22346132 GTATCATTCA
Statistics
Matches: 98, Mismatches: 21, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
38 25 0.26
39 10 0.10
40 63 0.64
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAACCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:22354262 original size:40 final size:40
Alignment explanation
Indices: 22354217--22354345 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
22354207 CGGAATACAA
22354217 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
22354257 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
22354297 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
22354337 CC-GATATAA
1 CCGGATATAA
22354346 TTTCCAGCAT
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 8 0.11
40 67 0.89
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:22362764 original size:41 final size:43
Alignment explanation
Indices: 22362673--22362770 Score: 137
Period size: 41 Copynumber: 2.3 Consensus size: 43
22362663 CGTCTAAGAT
* * *
22362673 ATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACACGAAATCAAATATCGATGCAACTGTCCCAGAC
*
22362716 AAGGTCTTACACGAAATCAAATA-CGATGCAAC-GTCCCAGAC
1 ATGGTCTTACACGAAATCAAATATCGATGCAACTGTCCCAGAC
*
22362757 GTGGTCTTACACGA
1 ATGGTCTTACACGA
22362771 TAACACATAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 21 0.43
42 8 0.16
43 20 0.41
ACGTcount: A:0.33, C:0.26, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGGTCTTACACGAAATCAAATATCGATGCAACTGTCCCAGAC
Found at i:22369616 original size:24 final size:24
Alignment explanation
Indices: 22369584--22369646 Score: 126
Period size: 24 Copynumber: 2.6 Consensus size: 24
22369574 AATCTCAAAT
22369584 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
22369608 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCGATTTACTATG
22369632 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
22369647 ACATAATAAG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.35
Consensus pattern (24 bp):
GCACTATGTGTGCGATTTACTATG
Found at i:22377556 original size:41 final size:41
Alignment explanation
Indices: 22377463--22377579 Score: 130
Period size: 41 Copynumber: 2.8 Consensus size: 41
22377453 AATACTCGAT
* *
22377463 ATCTCACACACTAAGTTCCTATATATAGCCGAAGCTATTATA
1 ATCTCTCACACTAAGTGCCT-TATATAGCCGAAGCTATTATA
* *
22377505 ATCT-TGCACACTAAGTGCCTTACATAGCCGAAGCTATCT-TG
1 ATCTCT-CACACTAAGTGCCTTATATAGCCGAAGCTAT-TATA
* * *
22377546 GTCTCTCACACTAATTGCCATATATAGCCGAAGC
1 ATCTCTCACACTAAGTGCCTTATATAGCCGAAGC
22377580 CATTCCGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
41 45 0.70
42 19 0.30
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (41 bp):
ATCTCTCACACTAAGTGCCTTATATAGCCGAAGCTATTATA
Found at i:22382445 original size:13 final size:13
Alignment explanation
Indices: 22382423--22382455 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
22382413 AAGGGTTTGT
22382423 TTAT-TAAACTAA
1 TTATCTAAACTAA
22382435 TTATCTAAACTAA
1 TTATCTAAACTAA
*
22382448 TTAACTAA
1 TTATCTAA
22382456 TTTCATCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:22385378 original size:6 final size:6
Alignment explanation
Indices: 22385367--22385446 Score: 69
Period size: 6 Copynumber: 13.7 Consensus size: 6
22385357 AAGAAAATTG
* * * *
22385367 AAAAAT AAAAAT -CAAAG AAAAAT AAGAAT -AAAAT AAATAAC ATAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAA-AAT A-AAAAT
*
22385415 AAAAAT AAGAAT --AAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
22385447 TAGGAGGATT
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
4 3 0.05
5 7 0.12
6 40 0.69
7 6 0.10
8 2 0.03
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:22385422 original size:16 final size:16
Alignment explanation
Indices: 22385367--22385448 Score: 80
Period size: 16 Copynumber: 5.1 Consensus size: 16
22385357 AAGAAAATTG
* *
22385367 AAAAATAAAAATCAAAG
1 AAAAAT-AAAATAAAAT
22385384 AAAAATAAGAATAAAAT
1 AAAAATAA-AATAAAAT
*
22385401 --AAATAACATAAAAT
1 AAAAATAAAATAAAAT
22385415 AAAAATAAGAAT-AAAT
1 AAAAATAA-AATAAAAT
22385431 AAAAATAAAAATAAAAT
1 AAAAAT-AAAATAAAAT
22385448 A
1 A
22385449 GGAGGATTCA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
14 7 0.13
15 6 0.11
16 21 0.38
17 21 0.38
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:22391774 original size:22 final size:22
Alignment explanation
Indices: 22391746--22391796 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
22391736 ATTGTGACGA
*
22391746 CCGTGTGGGCTCAATGGCTAGG
1 CCGTGTGGGCTCAATGGCCAGG
*
22391768 CCGTGTGGGTTCAATGGCCAGG
1 CCGTGTGGGCTCAATGGCCAGG
22391790 CCGTGTG
1 CCGTGTG
22391797 AGTTGTGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.12, C:0.24, G:0.41, T:0.24
Consensus pattern (22 bp):
CCGTGTGGGCTCAATGGCCAGG
Found at i:22396402 original size:46 final size:46
Alignment explanation
Indices: 22396352--22396527 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
22396342 TGGTTGAGCA
22396352 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22396398 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22396443 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22396491 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22396528 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22396508 original size:93 final size:93
Alignment explanation
Indices: 22396349--22396520 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
22396339 GGATGGTTGA
* *
22396349 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22396414 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22396442 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
22396507 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
22396521 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22403970 original size:46 final size:46
Alignment explanation
Indices: 22403920--22404094 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
22403910 TGGTTGAGCA
22403920 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22403966 TCCGAACTCGTTGAGTTGAGT-CGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22404010 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22404058 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22404095 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 3 0.03
45 7 0.06
46 75 0.69
47 7 0.06
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22409628 original size:42 final size:42
Alignment explanation
Indices: 22409523--22409639 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
22409513 GACTTATGAC
* *
22409523 TTACATGTAAGACCACATCTGGGACATTGGCATCGTATTTAA
1 TTACATGTAAGACCACATCTGGGACAGTGGCATCATATTTAA
* * * * *
22409565 TTTCATGTAAGACC-CTGTCTGGGATAGTGGTATCA-ATATTGA
1 TTACATGTAAGACCAC-ATCTGGGACAGTGGCATCATAT-TTAA
22409607 TTACATGTAAGACCACATCTGGGAC-GTTGGCAT
1 TTACATGTAAGACCACATCTGGGACAG-TGGCAT
22409640 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
41 4 0.07
42 55 0.92
43 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCACATCTGGGACAGTGGCATCATATTTAA
Found at i:22409888 original size:46 final size:46
Alignment explanation
Indices: 22409837--22409932 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
22409827 GGGAATGAGT
22409837 TATGATATGTATATGTAAATTATGTTTAAATGAAATATAAGAGATA
1 TATGATATGTATATGTAAATTATGTTTAAATGAAATATAAGAGATA
22409883 TATGATATGTATATGTAAATTATGTTTAAATGAAATATAAGAGATA
1 TATGATATGTATATGTAAATTATGTTTAAATGAAATATAAGAGATA
22409929 TATG
1 TATG
22409933 GCTAAGTGAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.40
Consensus pattern (46 bp):
TATGATATGTATATGTAAATTATGTTTAAATGAAATATAAGAGATA
Found at i:22422794 original size:44 final size:42
Alignment explanation
Indices: 22422731--22422823 Score: 125
Period size: 44 Copynumber: 2.2 Consensus size: 42
22422721 TGTGTTATCA
* *
22422731 TGTAAGACCACATCTGGGACGTTGGCATCG-ACTTATGATTTATG
1 TGTAAGACAACATCTGGGACATTGGCATCGTA-TT-TGATTT-TG
*
22422775 TGTAAGACAACGTCTGGGACATTGGCATCGTATTTGATTTTG
1 TGTAAGACAACATCTGGGACATTGGCATCGTATTTGATTTTG
22422817 TGTAAGA
1 TGTAAGA
22422824 TCCTGCCTGG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
42 9 0.20
43 6 0.13
44 29 0.64
45 1 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTAAGACAACATCTGGGACATTGGCATCGTATTTGATTTTG
Found at i:22422834 original size:42 final size:42
Alignment explanation
Indices: 22422744--22422892 Score: 108
Period size: 43 Copynumber: 3.5 Consensus size: 42
22422734 AAGACCACAT
* *
22422744 CTGGGACGTTGGCATCG-ACTTATGATTTATGTGTAAGACAACGT
1 CTGGGACATTGGCATCGTA-TT-TGATTTATGTGTAAGAC-ACGC
22422788 CTGGGACATTGGCATCGTATTTGATTT-TGTGTAAGATC-CTGC
1 CTGGGACATTGGCATCGTATTTGATTTATGTGTAAGA-CAC-GC
* * * ** *
22422830 CTGGGATAGTGGCATTGATATTTGA-TTACATGTAAGAACACGT
1 CTGGGACATTGGCATCG-TATTTGATTTATGTGTAAG-ACACGC
* * *
22422873 CTAGGACGTTGGCATTGTAT
1 CTGGGACATTGGCATCGTAT
22422893 GAGCTTTTCG
Statistics
Matches: 86, Mismatches: 12, Indels: 16
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 29 0.34
43 35 0.41
44 20 0.23
45 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (42 bp):
CTGGGACATTGGCATCGTATTTGATTTATGTGTAAGACACGC
Found at i:22429890 original size:30 final size:30
Alignment explanation
Indices: 22429856--22429916 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
22429846 GACATGTCTT
22429856 ACACTAGCACATATATCTCGAGGCTGATGC
1 ACACTAGCACATATATCTCGAGGCTGATGC
22429886 ACACTAGCACATATATCTCGAGGCTGATGC
1 ACACTAGCACATATATCTCGAGGCTGATGC
22429916 A
1 A
22429917 TGTCCCAGAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.26, G:0.20, T:0.23
Consensus pattern (30 bp):
ACACTAGCACATATATCTCGAGGCTGATGC
Found at i:22442397 original size:40 final size:40
Alignment explanation
Indices: 22442331--22442497 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
22442321 AAATTGAATG
* * *
22442331 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
22442370 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
22442410 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
22442450 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
22442490 ATATCCGG
1 ATATCCGG
22442498 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:22450316 original size:40 final size:40
Alignment explanation
Indices: 22450250--22450416 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
22450240 AAATTGAATG
* * *
22450250 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
22450289 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
22450329 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
22450369 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
22450409 ATATCCGG
1 ATATCCGG
22450417 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:22452312 original size:17 final size:17
Alignment explanation
Indices: 22452285--22452317 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
22452275 GATCGGGTCC
22452285 AAAAATCTTTTAATAAAA
1 AAAAATCTTTT-ATAAAA
22452303 AAAAAT-TTTTATAAA
1 AAAAATCTTTTATAAA
22452318 TTTTCAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 4 0.27
18 6 0.40
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAAATCTTTTATAAAA
Found at i:22462831 original size:83 final size:83
Alignment explanation
Indices: 22462693--22462949 Score: 340
Period size: 83 Copynumber: 3.1 Consensus size: 83
22462683 GATTTGTAGA
* * * * * * *
22462693 GATGCCAAATCATCTTGA-TCTATTTGAGAACTTTTGAGAATCATATCTGCTATGTCCTCGTTTT
1 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGTTTT
22462757 TTCCCTTGTAAGCACAAG
66 TTCCCTTGTAAGCACAAG
* * *
22462775 GATGCCAAACCATCTCGAGTTTGTTTTAGAACATTTGAGAGTCATAGT-TGCAATGTCCTCATTT
1 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATA-TCTGCAATGTCCTCGTTT
*
22462839 TTTCCCTTGTAAGCCCAAG
65 TTTCCCTTGTAAGCACAAG
22462858 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTT
1 GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCG-TTT
* *
22462923 GTT-CCTTGTAAACACAAG
65 TTTCCCTTGTAAGCACAAG
* *
22462941 AATACCAAA
1 GATGCCAAA
22462950 TCATTTTGGA
Statistics
Matches: 153, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
82 17 0.11
83 130 0.85
84 6 0.04
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.35
Consensus pattern (83 bp):
GATGCCAAACCATCTTGAGTTTGTTTAAGAACATTTGAGAGTCATATCTGCAATGTCCTCGTTTT
TTCCCTTGTAAGCACAAG
Found at i:22463096 original size:119 final size:119
Alignment explanation
Indices: 22462885--22463195 Score: 460
Period size: 119 Copynumber: 2.6 Consensus size: 119
22462875 AGTTTGTTTA
*
22462885 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
* * * *
22462950 TCATTTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTG
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTG
*
22463004 AGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
*
22463069 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTATATCTG
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTG
* * * * ** * * * *
22463123 AGAACGTCTGAGAATCAAATCTATTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAA
1 AGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
*
22463188 CCATCTTG
66 TCATCTTG
22463196 AGTTTGTTTA
Statistics
Matches: 174, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
119 174 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.33
Consensus pattern (119 bp):
AGAACATTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTACATCTG
Found at i:22463223 original size:202 final size:202
Alignment explanation
Indices: 22463004--22463380 Score: 619
Period size: 202 Copynumber: 1.9 Consensus size: 202
22462994 GCTACATTTG
* *
22463004 AGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
* *
22463069 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTCTGA
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATACTACATCTGAGAACGTCTGA
* *
22463134 GAATCAAATCTATTATGTCCTCGATTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGT
131 GAATCAAATCTACTATGTCCTCGATTTGTCCCTTGTAAACACAAGGATGCCAAACCATCTTGAGT
22463199 TTGTTTA
196 TTGTTTA
22463206 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
* * * * *
22463271 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTGAGAACTTTTGA
66 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATACTACATCTGAGAACGTCTGA
* * * *
22463336 GAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAG
131 GAATCAAATCTACTATGTCCTCGATTTGTCCCTTGTAAACACAAG
22463381 AATACCCAAT
Statistics
Matches: 160, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
202 160 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (202 bp):
AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAAATATACTACATCTGAGAACGTCTGA
GAATCAAATCTACTATGTCCTCGATTTGTCCCTTGTAAACACAAGGATGCCAAACCATCTTGAGT
TTGTTTA
Found at i:22463412 original size:321 final size:321
Alignment explanation
Indices: 22462827--22463438 Score: 1136
Period size: 321 Copynumber: 1.9 Consensus size: 321
22462817 CATAGTTGCA
* *
22462827 ATGTCCTCATTTTTTCCCTTGTAAGCCCAAGGATGCCAAACCATCTTGAGTTTGTTTAAGAACAT
1 ATGTCCTCATTTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTAAGAACAT
*
22462892 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATTTT
66 TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
*
22462957 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTACATTTGAGAACTTTTGAGAGTCAT
131 GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTGAGAACTTTTGAGAGTCAT
*
22463022 ATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCTTC
196 ATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCCTC
22463087 AGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTCTGAGAATCAAATCTATT
261 AGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTCTGAGAATCAAATCTATT
22463148 ATGTCCTCGA-TTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTAAGAACA
1 ATGTCCTC-ATTTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTAAGAACA
22463212 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCT
65 TTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCT
22463277 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTGAGAACTTTTGAGAGTCA
130 TGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTGAGAACTTTTGAGAGTCA
*
22463342 TATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCCAATCATCTTGGATCTGCCT
195 TATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCCT
* *
22463407 CAGTATAAACATCTGAAGGTTAGATCTGCTAT
260 CAGTATAAACATCTGAAGGTTAAATATGCTAT
22463439 TTTCAATTTG
Statistics
Matches: 282, Mismatches: 8, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
321 281 1.00
322 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.34
Consensus pattern (321 bp):
ATGTCCTCATTTTGTCCCTTGTAAGCACAAGGATGCCAAACCATCTTGAGTTTGTTTAAGAACAT
TTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTT
GGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTGAGAACTTTTGAGAGTCAT
ATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAATCATCTTGGATCTGCCTC
AGTATAAACATCTGAAGGTTAAATATGCTATATCTGAGAACGTCTGAGAATCAAATCTATT
Found at i:22463417 original size:119 final size:119
Alignment explanation
Indices: 22463206--22463433 Score: 420
Period size: 119 Copynumber: 1.9 Consensus size: 119
22463196 AGTTTGTTTA
22463206 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
*
22463271 TCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTG
66 TCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTG
* * *
22463325 AGAACTTTTGAGAGTCATATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCCAA
1 AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
22463390 TCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCT
66 TCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCT
22463434 GCTATTTTCA
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 105 1.00
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (119 bp):
AGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAACACAAGAATACCAAA
TCATCTTGGATCTGCCTCAGTATAAACATCTGAAGGTTAGATCTACTACATTTG
Found at i:22464270 original size:9 final size:9
Alignment explanation
Indices: 22464253--22464301 Score: 64
Period size: 9 Copynumber: 5.3 Consensus size: 9
22464243 GGCCTCTCCC
22464253 TTTTTTCTT
1 TTTTTTCTT
*
22464262 TTTTCTCTTT
1 TTTTTTC-TT
22464272 TTCTTTTCTT
1 TT-TTTTCTT
22464282 TTTTTTCTT
1 TTTTTTCTT
22464291 TTTTTT-TT
1 TTTTTTCTT
22464299 TTT
1 TTT
22464302 GAAATAGAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
8 5 0.14
9 19 0.53
10 8 0.22
11 4 0.11
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTCTT
Found at i:22464278 original size:20 final size:19
Alignment explanation
Indices: 22464253--22464301 Score: 73
Period size: 20 Copynumber: 2.6 Consensus size: 19
22464243 GGCCTCTCCC
22464253 TTTTTTCTTTTTTCTCTTT
1 TTTTTTCTTTTTTCTCTTT
*
22464272 TTCTTTTCTTTTTTTTCTTT
1 TT-TTTTCTTTTTTCTCTTT
22464292 TTTTTT-TTTT
1 TTTTTTCTTTT
22464302 GAAATAGAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 4 0.14
19 6 0.21
20 18 0.64
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (19 bp):
TTTTTTCTTTTTTCTCTTT
Found at i:22464280 original size:13 final size:14
Alignment explanation
Indices: 22464254--22464292 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
22464244 GCCTCTCCCT
*
22464254 TTTTTCTTTTTTCTC
1 TTTTTCTTTTCT-TC
*
22464269 TTTTTCTTTTCTTT
1 TTTTTCTTTTCTTC
22464283 TTTTTCTTTT
1 TTTTTCTTTT
22464293 TTTTTTTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.50
15 11 0.50
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTCTTTTCTTC
Found at i:22481799 original size:24 final size:23
Alignment explanation
Indices: 22481759--22481803 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
22481749 TTATTACAAC
*
22481759 TAATTTTTATTTTTATTTTTAGT
1 TAATTTTTAATTTTATTTTTAGT
22481782 TAATTTTATAATTTTATTTTTA
1 TAATTTT-TAATTTTATTTTTA
22481804 ATTTATTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (23 bp):
TAATTTTTAATTTTATTTTTAGT
Found at i:22481807 original size:12 final size:12
Alignment explanation
Indices: 22481761--22481807 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
22481751 ATTACAACTA
*
22481761 ATTTTTATTTTT
1 ATTTTTAATTTT
* *
22481773 ATTTTT-AGTTA
1 ATTTTTAATTTT
22481784 ATTTTATAATTTT
1 ATTTT-TAATTTT
22481797 ATTTTTAATTT
1 ATTTTTAATTT
22481808 ATTAATTTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
11 7 0.25
12 13 0.46
13 8 0.29
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (12 bp):
ATTTTTAATTTT
Found at i:22482653 original size:34 final size:35
Alignment explanation
Indices: 22482598--22482667 Score: 133
Period size: 34 Copynumber: 2.0 Consensus size: 35
22482588 AGACCACACC
22482598 ATTTGATTTGATATGTCAAAATGATTAAGGCACTT
1 ATTTGATTTGATATGTCAAAATGATTAAGGCACTT
22482633 ATTTGATTTGA-ATGTCAAAATGATTAAGGCACTT
1 ATTTGATTTGATATGTCAAAATGATTAAGGCACTT
22482667 A
1 A
22482668 GGATTAACCC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 24 0.69
35 11 0.31
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.39
Consensus pattern (35 bp):
ATTTGATTTGATATGTCAAAATGATTAAGGCACTT
Found at i:22489136 original size:51 final size:51
Alignment explanation
Indices: 22489076--22489193 Score: 209
Period size: 51 Copynumber: 2.3 Consensus size: 51
22489066 CATGTATGAG
22489076 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
22489127 ATGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
22489178 ATATATGTGATGTGAT
1 ATATATAT-ATGTGAT
22489194 GAATGTGAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
51 56 0.89
52 7 0.11
ACGTcount: A:0.32, C:0.07, G:0.28, T:0.33
Consensus pattern (51 bp):
ATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:22489185 original size:16 final size:16
Alignment explanation
Indices: 22489166--22489213 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
22489156 GATGTGATGA
22489166 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
*
22489182 ATGTG-ATGTG-ATGA-
1 ATGTGAAAGTGTAT-AT
22489196 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
22489212 AT
1 AT
22489214 ATGTGATAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
14 7 0.27
15 10 0.38
16 9 0.35
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:22489220 original size:32 final size:30
Alignment explanation
Indices: 22489156--22489213 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
22489146 CCTAATGGCC
22489156 GATGTGATGAATGTGAAAGTGTATATATGT
1 GATGTGATGAATGTGAAAGTGTATATATGT
22489186 GATGTGATGAATGTGAAAGTGTATATAT
1 GATGTGATGAATGTGAAAGTGTATATAT
22489214 ATGTGATAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.36
Consensus pattern (30 bp):
GATGTGATGAATGTGAAAGTGTATATATGT
Found at i:22489296 original size:96 final size:97
Alignment explanation
Indices: 22489186--22489397 Score: 399
Period size: 96 Copynumber: 2.2 Consensus size: 97
22489176 GTATATATGT
22489186 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
22489251 AAGTG-TATATATGTGATAAGGCCTAATGGCC
66 AAGTGATATATATGTGATAAGGCCTAATGGCC
22489282 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
22489347 AAGTGTATATATATGTGATAAGGCCTAATGGCC
66 AAGTG-ATATATATGTGATAAGGCCTAATGGCC
*
22489380 AATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAA
22489398 TATATGTGTG
Statistics
Matches: 113, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
96 70 0.62
98 43 0.38
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (97 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGATATATATGTGATAAGGCCTAATGGCC
Found at i:22489300 original size:126 final size:128
Alignment explanation
Indices: 22489077--22489309 Score: 434
Period size: 126 Copynumber: 1.8 Consensus size: 128
22489067 ATGTATGAGA
22489077 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATGTATATATGTGAT
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG-G-ATGTATATATGTGAT
22489142 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGTGATGAATGTGAAAGTG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGTGATGAATGTGAAAGTG
22489207 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA-G-TGTATATATGTGATAA
1 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATGTATATATGTGATAA
22489270 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
22489310 ATGTGATAAG
Statistics
Matches: 103, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
126 56 0.54
128 1 0.01
130 46 0.45
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (128 bp):
TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGGATGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGTGATGAATGTGAAAGTG
Found at i:22489412 original size:49 final size:49
Alignment explanation
Indices: 22489186--22489397 Score: 401
Period size: 49 Copynumber: 4.4 Consensus size: 49
22489176 GTATATATGT
22489186 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
22489235 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
22489282 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
22489331 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
*
22489380 AATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAA
22489398 TATATGTGTG
Statistics
Matches: 160, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
47 47 0.29
49 113 0.71
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
Found at i:22489430 original size:98 final size:97
Alignment explanation
Indices: 22489232--22489526 Score: 288
Period size: 96 Copynumber: 3.1 Consensus size: 97
22489222 AGGCCTAATG
*
22489232 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
* * * * * *
22489295 TGAAAGTGTATATAT-ATGTGATAAG-GCCTAATG
66 TGAAA-TATATGTGTGATGTGATATGTG-GTAA-A
22489328 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
1 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
22489393 TGAAATATATGTGTGATGTGTATATGTGGTAAA
66 TGAAATATATGTGTGATGTG-ATATGTGGTAAA
* * * * * * *
22489426 GCCGAAGGGCT-AATGTGAAA-TATATATAAGATATGTGTATATGG--TAA-AGCCGAATG-GCT
1 GCCGATGTGATGAATGTGAAAGTGTATAT---ATATGTG-ATAAGGCCTAATGGCC-AATGTGAT
*
22489485 -AATGTGAAATATATGTGTGATATGCATATGTGGTAAA
61 GAATGTGAAATATATGTGTGATGTG-ATATGTGGTAAA
22489522 GCCGA
1 GCCGA
22489527 ATGGCTAATG
Statistics
Matches: 173, Mismatches: 16, Indels: 20
0.83 0.08 0.10
Matches are distributed among these distances:
96 70 0.40
97 20 0.12
98 63 0.36
99 14 0.08
100 6 0.03
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.31
Consensus pattern (97 bp):
GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATG
TGAAATATATGTGTGATGTGATATGTGGTAAA
Found at i:22489446 original size:48 final size:48
Alignment explanation
Indices: 22489389--22489540 Score: 232
Period size: 48 Copynumber: 3.2 Consensus size: 48
22489379 CAATGTGATG
* *
22489389 AATGTGAAATATATGTGTGATGTGTATATGTGGTAAAGCCGAAGGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
* ** * *
22489437 AATGTGAAATATATATAAGATATGTGTATATGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
*
22489485 AATGTGAAATATATGTGTGATATGCATATGTGGTAAAGCCGAATGGCT
1 AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
22489533 AATGTGAA
1 AATGTGAA
22489541 TGTTGTAATA
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
AATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCGAATGGCT
Found at i:22489635 original size:37 final size:37
Alignment explanation
Indices: 22489585--22489707 Score: 210
Period size: 37 Copynumber: 3.3 Consensus size: 37
22489575 GGAAATATTT
*
22489585 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22489622 TCCGGATAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22489659 TCCGGGTATGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
22489696 TTCGGGTAAGAC
1 TCCGGGTAAGAC
22489708 TTCGTAATAA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 80 1.00
ACGTcount: A:0.24, C:0.19, G:0.33, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:22493459 original size:40 final size:40
Alignment explanation
Indices: 22493414--22493597 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
22493404 ATCGCACAAG
* * *
22493414 GCCTTCGGGTCTTAGCCTGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
22493454 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
22493494 GCCTTCGGGTCTTTGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
22493534 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
22493574 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
22493598 CATTCGAATA
Statistics
Matches: 124, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:22499269 original size:29 final size:29
Alignment explanation
Indices: 22499236--22499367 Score: 140
Period size: 29 Copynumber: 4.6 Consensus size: 29
22499226 GTGACGAGAT
*
22499236 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* *
22499265 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * ***
22499294 TGGCACTAAGTGTGCGAGCTCGAAGGGCA
1 TGGCACTAAGTGTGCGTGCTGGAAATACA
* * * *
22499323 TGGCACTATGTGTGCGGGCT-TAAATCGCA
1 TGGCACTAAGTGTGCGTGCTGGAAAT-ACA
22499352 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
22499368 AAATCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 2 0.02
29 86 0.98
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATACA
Found at i:22504869 original size:40 final size:40
Alignment explanation
Indices: 22504824--22505007 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
22504814 CTCGCACAAG
* *
22504824 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
22504864 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
22504904 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * * * *
22504944 GCCTTCGGATCTTAGTCCGAATATAGTCACTAGTATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
**
22504984 GCCTTCGGGAGTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
22505008 CATTCGAATA
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:22509383 original size:30 final size:30
Alignment explanation
Indices: 22509339--22509427 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
22509329 CAAAGATAAC
22509339 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
22509368 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
22509398 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
22509428 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:22509387 original size:15 final size:15
Alignment explanation
Indices: 22509339--22509418 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
22509329 CAAAGATAAC
*
22509339 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
22509353 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
22509368 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
22509383 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
22509398 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
22509413 AAGAAA
1 AAGAAA
22509419 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:22509427 original size:15 final size:15
Alignment explanation
Indices: 22509350--22509427 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
22509340 AGAAAACCGA
22509350 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
22509365 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
22509379 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
22509394 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
22509410 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
22509425 ATA
1 ATA
22509428 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:22515304 original size:28 final size:28
Alignment explanation
Indices: 22515231--22515304 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
22515221 GTTCAAATTG
* *
22515231 TATAGCACTAAGTGTGCAAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTTGACTA
22515259 TATAGCACTAAGTGTGCGAGTTTGACTA
1 TATAGCACTAAGTGTGCGAGTTTGACTA
22515287 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
22515305 GGCTTATTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTTGACTA
Found at i:22521846 original size:2 final size:2
Alignment explanation
Indices: 22521839--22521874 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
22521829 ATTAGCTATG
22521839 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22521875 GGAATTCTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22534939 original size:29 final size:29
Alignment explanation
Indices: 22534893--22534979 Score: 129
Period size: 29 Copynumber: 3.0 Consensus size: 29
22534883 ATATTCACAA
*
22534893 GGCCCCTTAGGCCCAAATCACATTTATAT
1 GGCCCTTTAGGCCCAAATCACATTTATAT
* *
22534922 GGCCCTTTAGGCCAAAATCAAATTTATAT
1 GGCCCTTTAGGCCCAAATCACATTTATAT
* *
22534951 GGCCCTTTAGGCCCAAACCACTTTTATAT
1 GGCCCTTTAGGCCCAAATCACATTTATAT
22534980 TCATGCTCAC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.30
Consensus pattern (29 bp):
GGCCCTTTAGGCCCAAATCACATTTATAT
Found at i:22539470 original size:29 final size:29
Alignment explanation
Indices: 22539438--22539555 Score: 130
Period size: 29 Copynumber: 4.1 Consensus size: 29
22539428 TTATATTCAC
* *
22539438 ATGACCCCTCAGGCCCAAATTACATTTAT
1 ATGACCCCTTAGGCCCAAATCACATTTAT
** *
22539467 ATGACCTTTTAGGCCCAAGTCACATTTAT
1 ATGACCCCTTAGGCCCAAATCACATTTAT
* *
22539496 ATG-GCCCTGTAGGCCCAAATCATATTTAT
1 ATGACCCCT-TAGGCCCAAATCACATTTAT
* * *
22539525 ATGGCCCTTTAGGCCCAAATCAAATTTAT
1 ATGACCCCTTAGGCCCAAATCACATTTAT
22539554 AT
1 AT
22539556 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
28 2 0.03
29 69 0.93
30 3 0.04
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.31
Consensus pattern (29 bp):
ATGACCCCTTAGGCCCAAATCACATTTAT
Found at i:22540996 original size:16 final size:16
Alignment explanation
Indices: 22540971--22541002 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22540961 AAAATTGAGA
22540971 TTTCGAGATTTTTGGG
1 TTTCGAGATTTTTGGG
*
22540987 TTTCGGGATTTTTGGG
1 TTTCGAGATTTTTGGG
22541003 GCGTTACAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.06, G:0.34, T:0.50
Consensus pattern (16 bp):
TTTCGAGATTTTTGGG
Found at i:22543940 original size:43 final size:43
Alignment explanation
Indices: 22543887--22543997 Score: 143
Period size: 43 Copynumber: 2.6 Consensus size: 43
22543877 GCCATATCTC
* *
22543887 AGATATGGTCTTACATGTTATCACAT-ATCGATGCCACTGTCCT
1 AGATATGGTCTTACACGTTATCACATAAT-GATGCCAATGTCCT
* * *
22543930 AGATAGGGTCTTACACGATATCATATAATGATGCCAATGTCCT
1 AGATATGGTCTTACACGTTATCACATAATGATGCCAATGTCCT
* *
22543973 AGACATGGTCTTACACGTAATCACA
1 AGATATGGTCTTACACGTTATCACA
22543998 ATACACTGCC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 55 0.96
44 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (43 bp):
AGATATGGTCTTACACGTTATCACATAATGATGCCAATGTCCT
Found at i:22551624 original size:43 final size:43
Alignment explanation
Indices: 22551544--22551681 Score: 138
Period size: 43 Copynumber: 3.2 Consensus size: 43
22551534 TATCCTAGGT
** * *
22551544 ATGGTCTTACA-TGTTATCACATATCGATGCCATTGTCCCAGAC
1 ATGGTCTTACACTGAAATCA-ATAACGATGCCAATGTCCCAGAC
* * *
22551587 AGGGTCTTACAC-GAAATCATATAACGATTCCAATGTCCAAGAC
1 ATGGTCTTACACTGAAATCA-ATAACGATGCCAATGTCCCAGAC
* * *
22551630 ATGGTCTTACACTTAATTACAAT-ACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACTGAAAT-CAATAACGATGCCAATGTCCCAGAC
22551673 ATGGTCTTA
1 ATGGTCTTA
22551682 TATGTAATCA
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
43 71 0.91
44 5 0.06
45 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
ATGGTCTTACACTGAAATCAATAACGATGCCAATGTCCCAGAC
Found at i:22552976 original size:27 final size:27
Alignment explanation
Indices: 22552935--22552988 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22552925 TGTCATGTGA
* *
22552935 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
22552962 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
22552989 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:22553285 original size:49 final size:49
Alignment explanation
Indices: 22553215--22553453 Score: 264
Period size: 49 Copynumber: 4.8 Consensus size: 49
22553205 TGAGGTCATG
*
22553215 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCA
* * * * *
22553264 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGAT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTGGTTGCA
* * ** **
22553313 CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACA
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTTGCA
* *
22553365 TGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTAGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCA
* * * * *
22553414 TGTGTAGTACTAACTACAGGCTACTATGCGTACCAGATAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA
22553454 CCTTGTCTAC
Statistics
Matches: 159, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
49 79 0.50
50 43 0.27
51 35 0.22
52 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCA
Found at i:22553404 original size:101 final size:98
Alignment explanation
Indices: 22553214--22553453 Score: 277
Period size: 101 Copynumber: 2.4 Consensus size: 98
22553204 GTGAGGTCAT
* **
22553214 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTTGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACTAAGT
* *
22553279 GCAGGCTACTATGCGTACCCGATAACTTCGATCA-C
66 ACAGGCTACTACGCGTACCCGATAA-TT-GAT-AGC
**
22553314 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGTCACATGTGTAGTACTAA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGATAATT-GGTCACATGTGTAGTACTAA
* * *
22553378 GTACAGGCTACTACGTGTACCGGATAATTGGTAGC
64 GTACAGGCTACTACGCGTACCCGATAATTGATAGC
* * * * * *
22553413 ATGTGTAGTACTAACTACAGGCTACTATGCGTACCAGATAA
1 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAA
22553454 CCTTGTCTAC
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
98 1 0.01
99 36 0.31
100 40 0.34
101 41 0.35
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (98 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGATAATTGGTCACATGTGTAGTACTAAGT
ACAGGCTACTACGCGTACCCGATAATTGATAGC
Found at i:22560617 original size:69 final size:69
Alignment explanation
Indices: 22560500--22560635 Score: 218
Period size: 69 Copynumber: 2.0 Consensus size: 69
22560490 GCCTACATTT
* * *
22560500 ATCAAACATAAAGCGTTCATTCTCAAAAATTATTCAACACAATTACATTGTCCATTATAAGGGCC
1 ATCAAACATAAAGCATTCATTCTCAAAAATCATTCAACACAATCACATTGTCCATTATAAGGGCC
22560565 TACG
66 TACG
* * *
22560569 ATCAAACATAAATCATTCATTCTCATAAATCATTCAACATAATCACATTGTCCATTATAAGGGCC
1 ATCAAACATAAAGCATTCATTCTCAAAAATCATTCAACACAATCACATTGTCCATTATAAGGGCC
22560634 TA
66 TA
22560636 TGAAGCCTTA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (69 bp):
ATCAAACATAAAGCATTCATTCTCAAAAATCATTCAACACAATCACATTGTCCATTATAAGGGCC
TACG
Found at i:22564099 original size:49 final size:49
Alignment explanation
Indices: 22564027--22564275 Score: 426
Period size: 49 Copynumber: 5.1 Consensus size: 49
22564017 ACATAATAAT
*
22564027 ATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
1 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
*
22564076 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAG
1 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
22564125 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
1 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
*
22564174 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAT
1 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
* * * * *
22564223 ATATGTGATAAGGCCTAATGGTCGACGTGATGAATGTGAAAGTGTATAT
1 ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
22564272 ATAT
1 ATAT
22564276 ATGTGGTAAA
Statistics
Matches: 192, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 192 1.00
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.30
Consensus pattern (49 bp):
ATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATAC
Found at i:22564399 original size:37 final size:36
Alignment explanation
Indices: 22564344--22564430 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
22564334 AACTTGGAAA
22564344 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
22564382 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
22564419 TATGTCCGGGTA
1 TATGTCCGGGTA
22564431 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:22572274 original size:6 final size:5
Alignment explanation
Indices: 22572254--22572307 Score: 54
Period size: 6 Copynumber: 9.6 Consensus size: 5
22572244 ATTGAGTCCA
22572254 TTTAT TTTAT TTTAGT TTTAGT TTTAT TTCTATT TTTAT GTTTAT TATTAT
1 TTTAT TTTAT TTTA-T TTTA-T TTTAT TT-TA-T TTTAT -TTTAT T-TTAT
22572305 TTT
1 TTT
22572308 CTTAGACTTC
Statistics
Matches: 44, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
5 16 0.36
6 25 0.57
7 3 0.07
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:22572280 original size:17 final size:18
Alignment explanation
Indices: 22572254--22572296 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
22572244 ATTGAGTCCA
22572254 TTTA-TTTTATTT-TAGT
1 TTTAGTTTTATTTCTAGT
*
22572270 TTTAGTTTTATTTCTATT
1 TTTAGTTTTATTTCTAGT
22572288 TTTATGTTT
1 TTTA-GTTT
22572297 ATTATTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 7 0.30
19 4 0.17
ACGTcount: A:0.16, C:0.02, G:0.07, T:0.74
Consensus pattern (18 bp):
TTTAGTTTTATTTCTAGT
Found at i:22575405 original size:42 final size:42
Alignment explanation
Indices: 22575291--22575451 Score: 180
Period size: 43 Copynumber: 3.8 Consensus size: 42
22575281 AGAAAGCTCG
* * *
22575291 TACAATGCCAATGTCCCAAACGTGGTCTTACATGTAATCAAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAA
* *
22575333 TATCGATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCAAA
1 TA-CAATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAA
* *
22575376 TACAATGCCAATGTCCCAGACGTGATCTTACACATAAATCATAA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACAC-GAAATCA-AA
* * * *
22575420 GACGATGCCAACGTCCCAGATGTGGTCTTACA
1 TACAATGCCAATGTCCCAGACGTGGTCTTACA
22575452 TGATAACACA
Statistics
Matches: 100, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
41 1 0.01
42 28 0.28
43 41 0.41
44 30 0.30
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAA
Found at i:22577764 original size:40 final size:40
Alignment explanation
Indices: 22577719--22577848 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
22577709 CGGAATACAA
22577719 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
22577759 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
22577799 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
22577839 CCGGATATAA
1 CCGGATATAA
22577849 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:22577863 original size:40 final size:40
Alignment explanation
Indices: 22577719--22577882 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
22577709 CGGAATACAA
* **
22577719 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
22577759 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
22577799 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
22577839 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
22577879 CCGG
1 CCGG
22577883 TATCATTCAA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:22586013 original size:40 final size:40
Alignment explanation
Indices: 22585968--22586097 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
22585958 CGGAATACAA
22585968 CCGGATATAACCACGT-GCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACGAATGCCTTCGGGTCTTAGC
* ** *
22586008 CCGGATAGAATGACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
* * *
22586048 CCGGATGTAGCCACTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACGAA-TGCCTTCGGGTCTTAGC
22586088 CCGGATATAA
1 CCGGATATAA
22586098 TTTCCAGCAT
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACGAATGCCTTCGGGTCTTAGC
Found at i:22586112 original size:40 final size:40
Alignment explanation
Indices: 22585968--22586131 Score: 145
Period size: 40 Copynumber: 4.1 Consensus size: 40
22585958 CGGAATACAA
* **
22585968 CCGGATATAACCACGTGCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCACCAGCAC-AATTGCCTTCGGGTCTTAGC
* *
22586008 CCGGATAGAATGACTC-GCACGAA-TGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-CAGCAC-AATTGCCTTCGGGTCTTAGC
* ** * *
22586048 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
** * * *
22586088 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
22586128 CCGG
1 CCGG
22586132 GTATCATTCA
Statistics
Matches: 100, Mismatches: 21, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
39 2 0.02
40 98 0.98
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (40 bp):
CCGGATATAATCACCAGCACAATTGCCTTCGGGTCTTAGC
Found at i:22591488 original size:21 final size:20
Alignment explanation
Indices: 22591458--22591498 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
22591448 GACTAAGGAC
22591458 ATGTTTAGGTTAGTCTATTA
1 ATGTTTAGGTTAGTCTATTA
22591478 ATGTGTTAGGTTAGTCTATTA
1 ATGT-TTAGGTTAGTCTATTA
22591499 TATAAGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.24, C:0.05, G:0.22, T:0.49
Consensus pattern (20 bp):
ATGTTTAGGTTAGTCTATTA
Found at i:22592123 original size:21 final size:20
Alignment explanation
Indices: 22592080--22592124 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
22592070 ATTTTGGTTA
* *
22592080 CTTTGAATTTTGGAAAGTTT
1 CTTTGAATTTTGAAAAATTT
*
22592100 CTTTGCATTTTGAAAACATTT
1 CTTTGAATTTTGAAAA-ATTT
22592121 CTTT
1 CTTT
22592125 TAGGAACATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.24, C:0.11, G:0.13, T:0.51
Consensus pattern (20 bp):
CTTTGAATTTTGAAAAATTT
Found at i:22593946 original size:23 final size:23
Alignment explanation
Indices: 22593902--22593946 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
22593892 CCCTTTCCTC
**
22593902 TTTTCTTTACTTTATTTACATTA
1 TTTTCTTTACACTATTTACATTA
* *
22593925 TTTTCTTTACACTCTTTTCATT
1 TTTTCTTTACACTATTTACATT
22593947 TTATATGTTG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTCTTTACACTATTTACATTA
Found at i:22595484 original size:50 final size:50
Alignment explanation
Indices: 22595417--22595703 Score: 288
Period size: 50 Copynumber: 5.7 Consensus size: 50
22595407 AGGTAACCTG
* * *
22595417 CCACAAGGGCTCCCCAAATAAATCGCCACAAAGGCTTTACAGGTGACTCC
1 CCACAAAGGCTTCCCAAATAAATCGCCACAAAGGCTTTACAGGTGACTCA
* * * * * *
22595467 CCACAAAGGTTTTCCAAATAAATTGCCACAAGGGCTTTACAGATGACTTA
1 CCACAAAGGCTTCCCAAATAAATCGCCACAAAGGCTTTACAGGTGACTCA
* * ** * *
22595517 CCATAAAGGTTTCCCAAATAAATTTCCA-TAAGAGCTTTATAGGTGACTCA
1 CCACAAAGGCTTCCCAAATAAATCGCCACAAAG-GCTTTACAGGTGACTCA
* * * *
22595567 CCACAAAGGCTTCCCAAATAAATCGCCACAAAAGCTTCACAAGTGACTTA
1 CCACAAAGGCTTCCCAAATAAATCGCCACAAAGGCTTTACAGGTGACTCA
*** * * * * * *
22595617 CTGTAAAGGCTTCCTATATAAATCGCCATAAGGGCTTTATAGGTGACTCG
1 CCACAAAGGCTTCCCAAATAAATCGCCACAAAGGCTTTACAGGTGACTCA
* *
22595667 CCACAAAGGCTTCCCAAATAAATCACCACAAAAGCTT
1 CCACAAAGGCTTCCCAAATAAATCGCCACAAAGGCTT
22595704 GGTTTGGTTT
Statistics
Matches: 186, Mismatches: 49, Indels: 4
0.78 0.21 0.02
Matches are distributed among these distances:
49 2 0.01
50 182 0.98
51 2 0.01
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.23
Consensus pattern (50 bp):
CCACAAAGGCTTCCCAAATAAATCGCCACAAAGGCTTTACAGGTGACTCA
Found at i:22595495 original size:25 final size:25
Alignment explanation
Indices: 22595467--22595540 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 25
22595457 AGGTGACTCC
*
22595467 CCACAAAGGTTTTCCAAATAAATTG
1 CCACAAAGGTTTTCCAAATAAATTA
* * * * * *
22595492 CCACAAGGGCTTTACAGATGACTTA
1 CCACAAAGGTTTTCCAAATAAATTA
* *
22595517 CCATAAAGGTTTCCCAAATAAATT
1 CCACAAAGGTTTTCCAAATAAATT
22595541 TCCATAAGAG
Statistics
Matches: 34, Mismatches: 15, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
CCACAAAGGTTTTCCAAATAAATTA
Found at i:22595564 original size:100 final size:100
Alignment explanation
Indices: 22595424--22595703 Score: 348
Period size: 100 Copynumber: 2.8 Consensus size: 100
22595414 CTGCCACAAG
* * * * * *
22595424 GGCTCCCCAAATAAATCGCCACAA-AGGCTTTACAGGTGACTCCCCACAAAGGTTTTCCAAATAA
1 GGCTTCCCAAATAAATCGCCATAAGA-GCTTTATAGGTGACTCACCACAAAGGCTTCCCAAATAA
* ** *
22595488 ATTGCCACAAGGGCTTTAC-AGATGACTTACCATAAA
65 ATCGCCACAAAAGCTTCACAAG-TGACTTACCATAAA
* **
22595524 GGTTTCCCAAATAAATTTCCATAAGAGCTTTATAGGTGACTCACCACAAAGGCTTCCCAAATAAA
1 GGCTTCCCAAATAAATCGCCATAAGAGCTTTATAGGTGACTCACCACAAAGGCTTCCCAAATAAA
**
22595589 TCGCCACAAAAGCTTCACAAGTGACTTACTGTAAA
66 TCGCCACAAAAGCTTCACAAGTGACTTACCATAAA
* * * *
22595624 GGCTTCCTATATAAATCGCCATAAGGGCTTTATAGGTGACTCGCCACAAAGGCTTCCCAAATAAA
1 GGCTTCCCAAATAAATCGCCATAAGAGCTTTATAGGTGACTCACCACAAAGGCTTCCCAAATAAA
*
22595689 TCACCACAAAAGCTT
66 TCGCCACAAAAGCTT
22595704 GGTTTGGTTT
Statistics
Matches: 155, Mismatches: 23, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
100 152 0.98
101 3 0.02
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (100 bp):
GGCTTCCCAAATAAATCGCCATAAGAGCTTTATAGGTGACTCACCACAAAGGCTTCCCAAATAAA
TCGCCACAAAAGCTTCACAAGTGACTTACCATAAA
Found at i:22595595 original size:25 final size:25
Alignment explanation
Indices: 22595567--22595703 Score: 67
Period size: 25 Copynumber: 5.5 Consensus size: 25
22595557 AGGTGACTCA
22595567 CCACAAAGGCTTCCCAAATAAATCG
1 CCACAAAGGCTTCCCAAATAAATCG
* * * * * **
22595592 CCACAAAAGCTTCACAAGTGACTTA
1 CCACAAAGGCTTCCCAAATAAATCG
*** * *
22595617 CTGTAAAGGCTTCCTATATAAATCG
1 CCACAAAGGCTTCCCAAATAAATCG
* * *** ** * *
22595642 CCATAAGGGCTTTATAGGTGACTCG
1 CCACAAAGGCTTCCCAAATAAATCG
*
22595667 CCACAAAGGCTTCCCAAATAAATCA
1 CCACAAAGGCTTCCCAAATAAATCG
*
22595692 CCACAAAAGCTT
1 CCACAAAGGCTT
22595704 GGTTTGGTTT
Statistics
Matches: 73, Mismatches: 39, Indels: 0
0.65 0.35 0.00
Matches are distributed among these distances:
25 73 1.00
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (25 bp):
CCACAAAGGCTTCCCAAATAAATCG
Found at i:22595650 original size:150 final size:150
Alignment explanation
Indices: 22595400--22595689 Score: 350
Period size: 150 Copynumber: 1.9 Consensus size: 150
22595390 CACCACTTAG
* * * * *
22595400 GCTTTATAGGTAACCTGCCACAAGGGCTCCCCAAATAAATCGCCACAAAGGCTTTACAGGTGACT
1 GCTTTATAGGTAACCTACCACAAAGGCTCCCCAAATAAATCGCCACAAAAGCTTCACAAGTGACT
* * * * * *
22595465 CCCCACAAAGGTTTTCCAAATAAATTGCCACAAGGGCTTTACAGATGACTTACCATAAAGGTTTC
66 CACCACAAAGGTCTTCCAAATAAATCGCCACAAGGGCTTTACAGATGACTCACCACAAAGGCTTC
22595530 CCAAATAAATTTCCATAAGA
131 CCAAATAAATTTCCATAAGA
* *
22595550 GCTTTATAGGTGA-CTCACCACAAAGGCTTCCCAAATAAATCGCCACAAAAGCTTCACAAGTGAC
1 GCTTTATAGGTAACCT-ACCACAAAGGCTCCCCAAATAAATCGCCACAAAAGCTTCACAAGTGAC
* *** * * * * *
22595614 TTACTGTAAAGG-CTTCCTATATAAATCGCCATAAGGGCTTTATAGGTGACTCGCCACAAAGGCT
65 TCACCACAAAGGTCTTCC-AAATAAATCGCCACAAGGGCTTTACAGATGACTCACCACAAAGGCT
22595678 TCCCAAATAAAT
129 TCCCAAATAAAT
22595690 CACCACAAAA
Statistics
Matches: 116, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
149 6 0.05
150 110 0.95
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.24
Consensus pattern (150 bp):
GCTTTATAGGTAACCTACCACAAAGGCTCCCCAAATAAATCGCCACAAAAGCTTCACAAGTGACT
CACCACAAAGGTCTTCCAAATAAATCGCCACAAGGGCTTTACAGATGACTCACCACAAAGGCTTC
CCAAATAAATTTCCATAAGA
Found at i:22598920 original size:28 final size:28
Alignment explanation
Indices: 22598855--22598955 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
22598845 ATAGTGAATC
*
22598855 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
22598884 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
22598912 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
22598942 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22598956 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:22606881 original size:28 final size:28
Alignment explanation
Indices: 22606816--22606916 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
22606806 ATAGTGAATC
*
22606816 CGCACACTTAGTGCTATATGTATTC-AACT
1 CGCACACTTAGTGCTATA--TAATCAAACT
22606845 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
22606873 CGCACACTTAGTGCTGTACAATTTTAAACC
1 CGCACACTTAGTGCTATATAA--TCAAACT
22606903 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22606917 CAATCTTGTC
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 4 0.06
28 23 0.36
29 18 0.28
30 19 0.30
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.30
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Done.