Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 82 of 325
Found at i:23421139 original size:18 final size:18
Alignment explanation
Indices: 23421116--23421151 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23421106 TTAATCACCC
23421116 TCTTCAACAAAATATTTT
1 TCTTCAACAAAATATTTT
* *
23421134 TCTTCACCAAAATGTTTT
1 TCTTCAACAAAATATTTT
23421152 AAATTGCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.19, G:0.03, T:0.44
Consensus pattern (18 bp):
TCTTCAACAAAATATTTT
Found at i:23423689 original size:27 final size:27
Alignment explanation
Indices: 23423647--23423738 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
23423637 TTTATACCTA
*
23423647 AAACTGTATCTGAATGGGCTAAGGCCT
1 AAACTGTATCTAAATGGGCTAAGGCCT
* *
23423674 AAACTGTAGCTAAATGGGCTATGGCCT
1 AAACTGTATCTAAATGGGCTAAGGCCT
* *
23423701 AAACTATATCTAAATGGGCTAAGGTCT
1 AAACTGTATCTAAATGGGCTAAGGCCT
23423728 AAACTGTATCT
1 AAACTGTATCT
23423739 GAATATGTTA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (27 bp):
AAACTGTATCTAAATGGGCTAAGGCCT
Found at i:23425663 original size:39 final size:39
Alignment explanation
Indices: 23425634--23425765 Score: 144
Period size: 39 Copynumber: 3.4 Consensus size: 39
23425624 GCTACTCGTT
*
23425634 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACATAACCCGGTTATAGTAACTCGCA
* *
23425673 CAGATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACATAACCCGG-TTATAGTAACTCGCA
* **
23425713 CAAATGCCTTCGGATC-TTAGTCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGA-CATAACCCGG-TTATAGTAACTCGCA
*
23425752 CGAATGCCTTCGGA
1 CAAATGCCTTCGGA
23425766 TCTTAGTCCG
Statistics
Matches: 82, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 46 0.56
40 34 0.41
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACATAACCCGGTTATAGTAACTCGCA
Found at i:23425708 original size:40 final size:39
Alignment explanation
Indices: 23425637--23425817 Score: 190
Period size: 40 Copynumber: 4.6 Consensus size: 39
23425627 ACTCGTTCAA
*
23425637 ATGCCTTCGGACATAGCCCGG-TTATAGTAACTCGCACAG
1 ATGCCTTCGGACTTAGCCCGGATT-TAGTAACTCGCACAG
* *
23425676 ATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAA
1 ATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCACAG
*
23425716 ATGCCTTCGGATCTTAG-TCGGATTTAGTAACTCGCAC-G
1 ATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCACAG
* * * *
23425754 AATGCCTTCGGATCTTAGTCCGGATATAGTCACTTAGCACA-
1 -ATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAG
*
23425795 AAGCCTTCGGGACTTAGCCCGGA
1 ATGCCTTC-GGACTTAGCCCGGA
23425818 CATCATTCGA
Statistics
Matches: 122, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
39 47 0.39
40 65 0.53
41 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
ATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAG
Found at i:23425744 original size:79 final size:80
Alignment explanation
Indices: 23425634--23425816 Score: 207
Period size: 79 Copynumber: 2.3 Consensus size: 80
23425624 GCTACTCGTT
23425634 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCAC-AGATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCACGA-ATGCCTTC-GGATCTTAACCCG
* *
23425697 GATTTAGTAAC-TCGCA
64 GATATAGTAACTTAGCA
* * **
23425713 CAAATGCCTTCGGATCTTAG-TCGGATT-TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGA-CATAGCCCGG-TTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCG
*
23425776 GATATAGTCACTTAGCA
64 GATATAGTAACTTAGCA
*
23425793 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTC-GGACATAGCCCGG
23425817 ACATCATTCG
Statistics
Matches: 89, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
78 3 0.03
79 65 0.73
80 21 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCACGAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCA
Found at i:23433697 original size:40 final size:40
Alignment explanation
Indices: 23433660--23433791 Score: 162
Period size: 40 Copynumber: 3.3 Consensus size: 40
23433650 GCTACTCGTT
*
23433660 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* *
23433700 CAGATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* **
23433740 CAAATGCCTTC-GGATC-TTAGTCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAACTCGCA
*
23433779 CGAATGCCTTCGG
1 CAAATGCCTTCGG
23433792 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
39 33 0.41
40 46 0.57
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:23433776 original size:39 final size:39
Alignment explanation
Indices: 23433688--23433828 Score: 169
Period size: 39 Copynumber: 3.6 Consensus size: 39
23433678 AGCCCGGTTA
* **
23433688 TAGTAACTCGCACAGATGCCTTCGGGA-CTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GGATCTT-AGTCGGATT
23433728 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
* *
23433767 TAGTAACTCGCACGAATGCCTTCGGATCTTAGTCCGGATA
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAGT-CGGATT
* *
23433807 TAGTCACTTAGCACAAA-GCCTT
1 TAGTAAC-TCGCACAAATGCCTT
23433829 TGGGACTTAG
Statistics
Matches: 90, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
39 42 0.47
40 41 0.46
41 7 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (39 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCGGATT
Found at i:23433838 original size:40 final size:39
Alignment explanation
Indices: 23433641--23433844 Score: 155
Period size: 40 Copynumber: 5.1 Consensus size: 39
23433631 CGGAGTTTAA
** * *
23433641 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAA-GCCTTTGGGACTTAGC
* * * *
23433681 CCGGTTATAGTAACTCGCACAGATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACA-AAGCCTTTGGGACTTAGC
* *
23433721 CCGGATTTAGTAACTCGCACAAATGCC-TTCGGATCTTAG-
1 CCGGATATAGTAACTCGCACAAA-GCCTTTGGGA-CTTAGC
* * * * *
23433760 TCGGATTTAGTAACTCGCACGAATGCC-TTCGGATCTTAGT
1 CCGGATATAGTAACTCGCAC-AAAGCCTTTGGGA-CTTAGC
* *
23433800 CCGGATATAGTCACTTAGCACAAAGCCTTTGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAAGCCTTTGGGACTTAGC
23433840 CCGGA
1 CCGGA
23433845 CATCATTCGA
Statistics
Matches: 135, Mismatches: 21, Indels: 16
0.78 0.12 0.09
Matches are distributed among these distances:
39 40 0.30
40 84 0.62
41 11 0.08
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAAGCCTTTGGGACTTAGC
Found at i:23439674 original size:28 final size:29
Alignment explanation
Indices: 23439576--23439674 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
23439566 TCACAAATTG
* *
23439576 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
23439605 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
23439633 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
23439661 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23439675 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:23447353 original size:28 final size:29
Alignment explanation
Indices: 23447255--23447353 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
23447245 TCACAAATTG
* *
23447255 GCACTAAGTGTGCGGGTTCAAAT-TGTATA
1 GCACTAAGTGTGCGAGTTCGAATAT-TATA
* * *
23447284 GCACTAAGTGTGCAAGTTTGATTA-TATA
1 GCACTAAGTGTGCGAGTTCGAATATTATA
*
23447312 GCACTAAGTGTGCGAGTTCGACTATTA-A
1 GCACTAAGTGTGCGAGTTCGAATATTATA
23447340 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
23447354 GGCTTATTAC
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 40 0.67
29 20 0.33
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTCGAATATTATA
Found at i:23461014 original size:26 final size:27
Alignment explanation
Indices: 23460974--23461031 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
23460964 TTAACTCTTA
23460974 TGAGCTTCCCGATTATATGACTCTTCG
1 TGAGCTTCCCGATTATATGACTCTTCG
* * * *
23461001 TGAGTTTCCC-ATTATTTGGCTCTTTG
1 TGAGCTTCCCGATTATATGACTCTTCG
23461027 TGAGC
1 TGAGC
23461032 ATCCTAATAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.16, C:0.22, G:0.21, T:0.41
Consensus pattern (27 bp):
TGAGCTTCCCGATTATATGACTCTTCG
Found at i:23463787 original size:30 final size:30
Alignment explanation
Indices: 23463753--23463813 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
23463743 TCCTTAACTC
23463753 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
23463783 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
23463813 A
1 A
23463814 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:23464226 original size:12 final size:12
Alignment explanation
Indices: 23464209--23464235 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23464199 GAACGGTGGT
23464209 TAATACTGAGGC
1 TAATACTGAGGC
23464221 TAATACTGAGGC
1 TAATACTGAGGC
23464233 TAA
1 TAA
23464236 GGTCAGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (12 bp):
TAATACTGAGGC
Found at i:23465403 original size:5 final size:5
Alignment explanation
Indices: 23465386--23465417 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
23465376 CCATTCTTCC
*
23465386 TTCTT TTCCT TTCTT TTCTT TTCTT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTCTT TT
23465418 TTCTCCATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TTCTT
Found at i:23466250 original size:8 final size:8
Alignment explanation
Indices: 23466237--23466268 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
23466227 CTAGATCGGC
23466237 AAAAGCCG
1 AAAAGCCG
23466245 AAAAGCCG
1 AAAAGCCG
*
23466253 AAATGCCG
1 AAAAGCCG
23466261 AAAAGCCG
1 AAAAGCCG
23466269 GTATTTTGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:23466547 original size:28 final size:28
Alignment explanation
Indices: 23466515--23466579 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
23466505 ATTTACTAGA
*
23466515 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
23466543 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
23466571 ATACCCCTA
1 ATACCCCTA
23466580 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:23466728 original size:28 final size:28
Alignment explanation
Indices: 23466697--23466775 Score: 113
Period size: 28 Copynumber: 2.8 Consensus size: 28
23466687 GGTGGCTATG
*
23466697 CCACAAATTATCTGTTCTGGTGGCCCTA
1 CCACAAATTATCTGTTCTGGTGGCACTA
*
23466725 CCACAAATTATCTGTTCTGGTGGCACTG
1 CCACAAATTATCTGTTCTGGTGGCACTA
* *
23466753 CCACAAAATATATGTATCTGGTG
1 CCACAAATTATCTGT-TCTGGTG
23466776 ACTCTGTCAC
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
28 39 0.85
29 7 0.15
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (28 bp):
CCACAAATTATCTGTTCTGGTGGCACTA
Found at i:23466786 original size:29 final size:28
Alignment explanation
Indices: 23466695--23466786 Score: 85
Period size: 28 Copynumber: 3.2 Consensus size: 28
23466685 CTGGTGGCTA
* * * *
23466695 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATATGTTCTGGTGACAC
* * * *
23466723 TACCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATATGTTCTGGTGACAC
*
23466751 TGCCACAAAATATATGTATCTGGTGACTC
1 TGCCACAAAATATATGT-TCTGGTGACAC
*
23466780 TGTCACA
1 TGCCACA
23466787 TTTTCTGTAT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
28 40 0.73
29 15 0.27
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATATGTTCTGGTGACAC
Found at i:23467267 original size:18 final size:18
Alignment explanation
Indices: 23467228--23467268 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
23467218 TAATAAGGCC
* *
23467228 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
23467246 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
23467264 TTTTA
1 TTTTA
23467269 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:23471431 original size:48 final size:48
Alignment explanation
Indices: 23471372--23471578 Score: 351
Period size: 48 Copynumber: 4.3 Consensus size: 48
23471362 ATGTGAATAA
*
23471372 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGACTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
23471420 AAATATGTATGAGATATGTACATGTGGTAAAGCCGAATGGCTAATGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
* * *
23471468 AAATATATATGAGATATGTATATGTGGTAAAACCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
23471516 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG
1 AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
*
23471564 AAATATGTAGGAGAT
1 AAATATGTATGAGAT
23471579 GTGTGTATAT
Statistics
Matches: 150, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 150 1.00
ACGTcount: A:0.37, C:0.06, G:0.27, T:0.30
Consensus pattern (48 bp):
AAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG
Found at i:23471770 original size:37 final size:37
Alignment explanation
Indices: 23471719--23471821 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
23471709 GGAAATATAT
23471719 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
23471756 TCCGGGTAAAACCCGATGACTACGTGTAGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
23471793 TCCGGGTAAGGCCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
23471822 GGACTATTCG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.24
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:23473320 original size:119 final size:120
Alignment explanation
Indices: 23473101--23473391 Score: 523
Period size: 119 Copynumber: 2.4 Consensus size: 120
23473091 GAGTTATATA
*
23473101 TATCCGGCCTAAG-TCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGC
1 TATCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGC
*
23473165 ATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
65 ATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
23473221 TAT-CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
*
23473285 TTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTTCTAGTAATG
66 TTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
*
23473340 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAA
23473392 ACCTCGAAGG
Statistics
Matches: 165, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
119 113 0.68
120 52 0.32
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (120 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
TTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTAATG
Found at i:23473400 original size:40 final size:40
Alignment explanation
Indices: 23473101--23473391 Score: 523
Period size: 40 Copynumber: 7.3 Consensus size: 40
23473091 GAGTTATATA
*
23473101 TATCCGGCCTAAG-TCTCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATG
23473141 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
23473181 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
23473221 TAT-CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
23473260 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
* *
23473300 TATCCGGGCTAAGTTCCGAAGAGCATTCGTTCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
*
23473340 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
23473380 TATCCGGGCTAA
1 TATCCGGGCTAA
23473392 ACCTCGAAGG
Statistics
Matches: 243, Mismatches: 6, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
39 39 0.16
40 202 0.83
41 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATG
Found at i:23473405 original size:159 final size:159
Alignment explanation
Indices: 23473101--23473413 Score: 515
Period size: 159 Copynumber: 2.0 Consensus size: 159
23473091 GAGTTATATA
23473101 TATCCGGCCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
1 TATCCGGCCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
* *
23473166 TTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCGGGCTA
66 TTCGTGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCGGGCTA
** *
23473231 AGTTCCGAAGAGCATTCGTGCTAGTGATG
131 ACCTCCGAAGAGCATTCATGCTAGTGATG
*
23473260 TATCCGGGCTAAGT-TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGC
1 TATCCGGCCTAAGTCT-CGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGC
*
23473324 ATTCGTTCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGC
65 ATTCGTGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATAT-CGGGC
23473389 TAAACCT-CGAAG-GCATTCATGCTAG
129 T-AACCTCCGAAGAGCATTCATGCTAG
23473414 AGTTATGAGG
Statistics
Matches: 144, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
158 1 0.01
159 129 0.90
160 11 0.08
161 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (159 bp):
TATCCGGCCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCA
TTCGTGCTAGTAATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCGGGCTA
ACCTCCGAAGAGCATTCATGCTAGTGATG
Found at i:23473499 original size:56 final size:57
Alignment explanation
Indices: 23473419--23473606 Score: 227
Period size: 56 Copynumber: 3.3 Consensus size: 57
23473409 GCTAGAGTTA
* * * * * * *
23473419 TGAGGCACTGTGTGTGCAATTTCTTCAACCGAGCACTATGTGTTCTAGA-TAGTAGT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTAGTAAT
*
23473475 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTGGTAAT
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTAGTAAT
* * * * * *
23473532 TGAGGCACTATGTGTGCGAGTTCTTTAATCGAGCGCTATGTGTGCGAAATCAGTCAG
1 TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTAGTAAT
*
23473589 TG-GGCACTATGTATGCGA
1 TGAGGCACTATGTGTGCGA
23473607 AGTGTGTTTC
Statistics
Matches: 115, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
56 58 0.50
57 57 0.50
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (57 bp):
TGAGGCACTATGTGTGCGAGTTCTTCAATCGAGCACTATGTGTGCGAGATTAGTAAT
Found at i:23473549 original size:29 final size:29
Alignment explanation
Indices: 23473451--23473551 Score: 109
Period size: 28 Copynumber: 3.6 Consensus size: 29
23473441 CTTCAACCGA
* * *
23473451 GCACTATGTGTTCTAGA-TAGTAGTTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
** *
23473479 GCACTATGTGTGCGAG-TTCTTCAATCGA-
1 GCACTATGTGTGCGAGATTAGT-AATTGAG
*
23473507 GCACTATGTGTGCGAGATTGGTAATTGAG
1 GCACTATGTGTGCGAGATTAGTAATTGAG
23473536 GCACTATGTGTGCGAG
1 GCACTATGTGTGCGAG
23473552 TTCTTTAATC
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
28 37 0.62
29 23 0.38
ACGTcount: A:0.23, C:0.15, G:0.31, T:0.32
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATTAGTAATTGAG
Found at i:23473560 original size:29 final size:28
Alignment explanation
Indices: 23473479--23473578 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
23473469 AGTAGTTGAG
*
23473479 GCACTATGTGTGCGAGTTCTTCAATCGA
1 GCACTATGTGTGCGAGTTCTTTAATCGA
** *
23473507 GCACTATGTGTGCGAGATT-GGTAATTGA
1 GCACTATGTGTGCGAG-TTCTTTAATCGA
23473535 GGCACTATGTGTGCGAGTTCTTTAATCGA
1 -GCACTATGTGTGCGAGTTCTTTAATCGA
*
23473564 GCGCTATGTGTGCGA
1 GCACTATGTGTGCGA
23473579 AATCAGTCAG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
28 37 0.61
29 24 0.39
ACGTcount: A:0.21, C:0.17, G:0.30, T:0.32
Consensus pattern (28 bp):
GCACTATGTGTGCGAGTTCTTTAATCGA
Found at i:23477247 original size:47 final size:48
Alignment explanation
Indices: 23477112--23477353 Score: 362
Period size: 47 Copynumber: 5.0 Consensus size: 48
23477102 CAAGATAAAT
* * ***
23477112 ATATATATGTGTGGTAAAGCCGAATGGCATGAATAAAAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGC-T-AATGTGAAATATGTATGAG
*
23477162 TTATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
23477210 ATATGTATATGTGGT-AAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
23477257 ATATGTATATGTGGTAAA-CCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
23477304 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
23477352 AT
1 AT
23477354 GTGTGTATAT
Statistics
Matches: 179, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
47 91 0.51
48 62 0.35
49 1 0.01
50 25 0.14
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:23477375 original size:94 final size:94
Alignment explanation
Indices: 23477112--23477363 Score: 306
Period size: 95 Copynumber: 2.6 Consensus size: 94
23477102 CAAGATAAAT
* * *** * * * *
23477112 ATATATATGTGTGGTAAAGCCGAATGGCATGAATAAAAAATATGTATGAGTTATGTATATGTGGT
1 ATATGTATATGTGGT-AAGCCGAATGGC-T-AATGTGAAATATATAGGAGATATGTATATATGGT
23477177 AAAGCCGAATGGCTAATGTGAAATATGTATGAG
63 -AAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
23477210 ATATGTATATGTGGTAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAA
1 ATATGTATATGTGGTAAGCCGAATGGCTAATGTGAAATATATAGGAGATATGTATATATGGTAAG
*
23477275 CCGAATGGCTAGTGTGAAATATGTATGAG
66 CCGAATGGCTAATGTGAAATATGTATGAG
* * * *
23477304 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAGATGTGTGTATAT
1 ATATGTATATGTGGT-AAGCCGAATGGCTAATGTGAAATATATAGGAGATATGTATATAT
23477364 TGTGGCCGAA
Statistics
Matches: 138, Mismatches: 15, Indels: 5
0.87 0.09 0.03
Matches are distributed among these distances:
94 45 0.33
95 67 0.49
96 1 0.01
97 12 0.09
98 13 0.09
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.32
Consensus pattern (94 bp):
ATATGTATATGTGGTAAGCCGAATGGCTAATGTGAAATATATAGGAGATATGTATATATGGTAAG
CCGAATGGCTAATGTGAAATATGTATGAG
Found at i:23477595 original size:37 final size:37
Alignment explanation
Indices: 23477494--23477595 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
23477484 GGAAATATAT
23477494 TCCGGGTAAGA-CCGATGACTATGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
** *
23477530 TCCGGGTAAGACCCGATGACTACATGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
*
23477567 TCCGGGTAAGACCCGATAACTATGTGTGG
1 TCCGGGTAAGACCCGATGACTATGTGTGG
23477596 GGACTATTCG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
36 11 0.19
37 48 0.81
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTATGTGTGGAGATTATG
Found at i:23480673 original size:40 final size:40
Alignment explanation
Indices: 23480614--23480831 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
23480604 CGGATGATAA
* *
23480614 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
23480654 CCGAGCTAAGCCCCGAAGGCATTTGTGCAAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
23480694 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
23480734 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
23480774 CCGGGCTAAGTCCCGAAGACATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
23480814 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23480832 TACTTGGTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
41 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:23482664 original size:125 final size:123
Alignment explanation
Indices: 23482429--23482664 Score: 323
Period size: 125 Copynumber: 1.9 Consensus size: 123
23482419 GAATTATATG
* * * *
23482429 AAATGAAATATGGATGTGTAATGATTATTGATTTATGTGTGTATGAGTATTTGAATGATACCCGG
1 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGTATGAGCAATTGAATGATACCCGG
* * * ** *
23482494 GCTAAGTCCCGAAGGCGATTATGCTAGTGATATGTTTGTGTTTGAGCCTTAGTAACGA
66 GCTAAGTCCCGAAGACGATTATGCTAGTAATATATCCGTGGTTGAGCCTTAGTAACGA
*
23482552 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGTGCATGAGCAATTGAATGATATCC
1 AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGT--ATGAGCAATTGAATGATACCC
23482617 GGGCTAAGTCCCGAAGAC-ATTTATGCTAGTAATTATATCCG-GGTTGAG
64 GGGCTAAGTCCCGAAGACGA-TTATGCTAGTAA-TATATCCGTGGTTGAG
23482665 ACCCGAAGGC
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
123 40 0.41
124 1 0.01
125 52 0.53
126 5 0.05
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (123 bp):
AAATGAAACATGGATGTGTAATGATTATTGATGTATGTGTGTATGAGCAATTGAATGATACCCGG
GCTAAGTCCCGAAGACGATTATGCTAGTAATATATCCGTGGTTGAGCCTTAGTAACGA
Found at i:23482803 original size:40 final size:40
Alignment explanation
Indices: 23482611--23482818 Score: 222
Period size: 40 Copynumber: 5.2 Consensus size: 40
23482601 CAATTGAATG
* * ** * **
23482611 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * * *
23482651 ATATCCGGGTTGAGACCCGAAGGCAATT-GTGCTAGT-GACT
1 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCAAGTCG-TT
*
23482691 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
23482731 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
* * *
23482771 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
23482811 ATATCCGG
1 ATATCCGG
23482819 TTGTATTCCG
Statistics
Matches: 142, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
39 3 0.02
40 135 0.95
41 4 0.03
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTCGTT
Found at i:23487266 original size:37 final size:37
Alignment explanation
Indices: 23487223--23487297 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
23487213 CAGAAATATG
23487223 TAAGAAAGAGGTGTGAAGCATACCTTGCATATGTACT
1 TAAGAAAGAGGTGTGAAGCATACCTTGCATATGTACT
* *
23487260 TAAGAAAGGGGTGTGAAGCATACCTTGCGTATGTACT
1 TAAGAAAGAGGTGTGAAGCATACCTTGCATATGTACT
23487297 T
1 T
23487298 GATGACAAAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (37 bp):
TAAGAAAGAGGTGTGAAGCATACCTTGCATATGTACT
Found at i:23491985 original size:40 final size:40
Alignment explanation
Indices: 23491930--23492107 Score: 209
Period size: 40 Copynumber: 4.5 Consensus size: 40
23491920 CGGATGATAA
* *
23491930 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
23491970 CCGGGCTAAGCCCCGAAGGCGTTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
23492010 CCGGGCTACGTCCCGAAGGTATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
23492050 CCGGGCTAAGTCCCGAAGACATTTGAGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
23492090 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23492108 TACTTGGTTT
Statistics
Matches: 117, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
39 16 0.14
40 100 0.85
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:23497383 original size:40 final size:40
Alignment explanation
Indices: 23497290--23497507 Score: 248
Period size: 40 Copynumber: 5.5 Consensus size: 40
23497280 AAGCCAAGTA
* * *
23497290 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
23497328 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23497368 CCTTCGGGACTTAGCCCAGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
23497408 CCTTCGGGACTTAGACCGGATGTAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23497448 CCTTCAGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
23497489 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23497508 TTATCATCCA
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 12 0.08
39 17 0.11
40 98 0.64
41 23 0.15
42 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23505523 original size:39 final size:39
Alignment explanation
Indices: 23505462--23505677 Score: 269
Period size: 39 Copynumber: 5.5 Consensus size: 39
23505452 AAGCCAAGTA
* * *
23505462 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAATG
*
23505500 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATG
23505539 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
* * *
23505578 CCTTCGGGACTTAGCCCGGATGTAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC-AATG
* *
23505618 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAATG
23505659 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23505678 TTATCATCCA
Statistics
Matches: 158, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
38 20 0.13
39 74 0.47
40 38 0.24
41 23 0.15
42 3 0.02
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAATG
Found at i:23513736 original size:40 final size:40
Alignment explanation
Indices: 23513643--23513817 Score: 216
Period size: 39 Copynumber: 4.5 Consensus size: 40
23513633 AAGCCAAGTA
* * *
23513643 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
23513681 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23513721 CCTTCGGGACTTAGCCCGGATAT-GTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
23513760 CCTTC-GGACTTAGCCTGGATGTAATAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23513799 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23513818 TTATCATCCA
Statistics
Matches: 119, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
38 27 0.23
39 54 0.45
40 38 0.32
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23520942 original size:25 final size:25
Alignment explanation
Indices: 23520906--23520957 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
23520896 CGAGTAAGTT
23520906 AACATAGCTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
*
23520931 AACATAGTTTAGTAAGTTTAAAACA
1 AACATAGCTTAGTAAGTTTAAAACA
23520956 AA
1 AA
23520958 TAGACAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (25 bp):
AACATAGCTTAGTAAGTTTAAAACA
Found at i:23523352 original size:25 final size:25
Alignment explanation
Indices: 23523294--23523352 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
23523284 ACACACGGCC
* *
23523294 ATGTGTACAGGCATGTGGTTTGGCG
1 ATGTGTACGGGCATGTAGTTTGGCG
*
23523319 ATGTATACGGGCATGTAGTTTGGCCG
1 ATGTGTACGGGCATGTAGTTTGG-CG
23523345 A-GTGTACG
1 ATGTGTACG
23523353 AGTGTGCGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 26 0.90
26 3 0.10
ACGTcount: A:0.19, C:0.14, G:0.37, T:0.31
Consensus pattern (25 bp):
ATGTGTACGGGCATGTAGTTTGGCG
Found at i:23525679 original size:14 final size:15
Alignment explanation
Indices: 23525660--23525689 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23525650 GTTTATTATA
23525660 TGTGAA-GTATCATG
1 TGTGAATGTATCATG
23525674 TGTGAATGTATCATG
1 TGTGAATGTATCATG
23525689 T
1 T
23525690 CTTAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.40
Consensus pattern (15 bp):
TGTGAATGTATCATG
Found at i:23530075 original size:224 final size:224
Alignment explanation
Indices: 23529685--23530101 Score: 780
Period size: 224 Copynumber: 1.9 Consensus size: 224
23529675 ATTGAACTGA
23529685 TTGTAATATATTTGTGATATGACAGAATTGGAAAGGTATGAAAAGAAGTTTATGAAATGTGTGCA
1 TTGTAATATATTTGTGATATGACAGAATTGGAAAGGTATGAAAAGAAGTTTATGAAATGTGTGCA
23529750 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
* *
23529815 CGCAGGGAATGAGTACGATCGTTCACTAATGAATTGATGGAAAAGAGCATGGTTGGACCATGGTC
131 CGCAGGGAATGAGTACGATCGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGGTC
23529880 TTTTCCGTCAATTCATTAGTATAAAGTAT
196 TTTTCCGTCAATTCATTAGTATAAAGTAT
* *
23529909 TTGTAATATATTTGTGATATGACGGAATTGGAAAGGTATGAAAAGAAGTTTATGATATGTGTGCA
1 TTGTAATATATTTGTGATATGACAGAATTGGAAAGGTATGAAAAGAAGTTTATGAAATGTGTGCA
23529974 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
66 TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
* *
23530039 CGCATGGAATGAGTACGATTGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGG
131 CGCAGGGAATGAGTACGATCGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGG
23530102 CAATACATGA
Statistics
Matches: 187, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
224 187 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (224 bp):
TTGTAATATATTTGTGATATGACAGAATTGGAAAGGTATGAAAAGAAGTTTATGAAATGTGTGCA
TCAGTGTAAAGATATGTATGAGATTGTATAAAGTAAATGGTAATGAAAGATCAAATTGGGTGGAA
CGCAGGGAATGAGTACGATCGTTCACTAATGAATTGACGGAAAAGACCATGGTTGGACCATGGTC
TTTTCCGTCAATTCATTAGTATAAAGTAT
Found at i:23535119 original size:15 final size:15
Alignment explanation
Indices: 23535099--23535167 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
23535089 GTATCTTGGG
23535099 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
23535114 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
23535129 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
23535144 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
23535159 TTTCTTTAT
1 TTTCTTTAT
23535168 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:23535168 original size:30 final size:30
Alignment explanation
Indices: 23535090--23535177 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
23535080 CATAGTATCG
* * * *
23535090 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
23535120 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
23535150 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
23535178 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:23537614 original size:46 final size:46
Alignment explanation
Indices: 23537561--23537736 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
23537551 TATTTGGGCA
23537561 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
23537607 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23537652 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
23537700 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23537737 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 64 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23537716 original size:93 final size:93
Alignment explanation
Indices: 23537557--23537728 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
23537547 GGGATATTTG
* *
23537557 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
23537622 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
23537650 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
23537715 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
23537729 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:23539417 original size:64 final size:64
Alignment explanation
Indices: 23539262--23539578 Score: 275
Period size: 64 Copynumber: 4.9 Consensus size: 64
23539252 ATATAGATGG
* * ** *
23539262 TATGTAGCTAGGTCACATGTGTAATAC-GGGATGTATACCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCACATGGGTGATACTATG-TGTACACCATGTAG-ACAAGAGAGCTACGAG--
23539325 ATTA
62 A-TA
* *
23539329 TGAGGTAGCTAGGTCTCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTAC-AGGAT
1 T-ATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGA-GAT
23539393 A
64 A
*
23539394 TATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
1 TATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* ** * * * * * * * *
23539458 AATGTAGCTAGGTTGCATGTGTGGTTCCAAGTGAAGGACACCATGTAAAGAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
23539523 TA
63 TA
* * * * * *
23539525 -AAGTGGCTAGGTCACATGGGTGGTAGTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
23539579 CAAAATTATG
Statistics
Matches: 207, Mismatches: 34, Indels: 22
0.79 0.13 0.08
Matches are distributed among these distances:
63 18 0.09
64 79 0.38
65 11 0.05
66 19 0.09
67 31 0.15
68 47 0.23
69 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:23553807 original size:29 final size:29
Alignment explanation
Indices: 23553775--23553909 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 29
23553765 ATACCCTCCG
** * *
23553775 AGCTCGCACACCGAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
* * * *
23553804 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
23553833 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATATTTCC
*
23553862 AGCACGCACACTTAGTGCCATATATTTCC
1 AGCTCGCACACTTAGTGCCATATATTTCC
*
23553891 AGCACGCACACTTAGTGCC
1 AGCTCGCACACTTAGTGCC
23553910 GATCTCGTCA
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
29 92 0.99
30 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.16, T:0.30
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATATTTCC
Found at i:23553842 original size:58 final size:58
Alignment explanation
Indices: 23553721--23553910 Score: 179
Period size: 58 Copynumber: 3.3 Consensus size: 58
23553711 TACTCGATTT
* * * *** *
23553721 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCC-AGCA
** * ** * *
23553779 CGCACACCGAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
23553837 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
23553895 CGCACACTTAGTGCCG
1 CGCACACTTAGTGCCG
23553911 ATCTCGTCAC
Statistics
Matches: 105, Mismatches: 24, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
56 4 0.04
57 4 0.04
58 94 0.90
59 3 0.03
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:23561008 original size:29 final size:29
Alignment explanation
Indices: 23560974--23561106 Score: 167
Period size: 29 Copynumber: 4.6 Consensus size: 29
23560964 CCCTCGAGCT
** * * *
23560974 CGCACACCCAGTGCCGTATTTTTCCAGCT
1 CGCACACTTAGTGCCATATATTTCCAGCA
* * * *
23561003 TGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
* *
23561032 TGCACACTTAGTGCCTTATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
23561061 CGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCATATATTTCCAGCA
23561090 CGCACACTTAGTGCCAT
1 CGCACACTTAGTGCCAT
23561107 CTCGTCACCG
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 92 1.00
ACGTcount: A:0.24, C:0.31, G:0.15, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCCATATATTTCCAGCA
Found at i:23561045 original size:58 final size:58
Alignment explanation
Indices: 23560917--23561104 Score: 175
Period size: 58 Copynumber: 3.3 Consensus size: 58
23560907 TACTCGATTT
* * * *** * *
23560917 CGCACACTTAGTGCCACGTA-ATTT-AAGCCCGCACACACAGTGCCATA-CCCTCGAGCT
1 CGCACACTTAGTG-C-CGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
** * ** * *
23560974 CGCACACCCAGTGCCGTATTTTTCCAGCTTGCACACATAGTGTCATATTTTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
* * *
23561032 TGCACACTTAGTGCCTTATATTTCCAGCACGCACACTTAGTGCCATATATTTCCAGCA
1 CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
23561090 CGCACACTTAGTGCC
1 CGCACACTTAGTGCC
23561105 ATCTCGTCAC
Statistics
Matches: 104, Mismatches: 24, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
55 4 0.04
56 4 0.04
57 29 0.28
58 67 0.64
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (58 bp):
CGCACACTTAGTGCCGTATATTTCCAGCACGCACACATAGTGCCATATATTTCCAGCA
Found at i:23563437 original size:46 final size:46
Alignment explanation
Indices: 23563294--23563508 Score: 178
Period size: 46 Copynumber: 4.7 Consensus size: 46
23563284 ATTGTGTGCT
* *
23563294 AGTGTAAGACATGTCTGGGACATGCATCAGCT--ACAT-TACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTA-GA-A-CC
* * * * *
23563340 AGTGTAAGACCAT-TCTAGGACATGGCATCGGCATTGAAATG-AGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGAGATGTAGAACC
23563387 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AACC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTCGAGATGTAGAACC
* * *
23563433 AGTGTAAGACATGTTTGGGACATGCATCGGCTACAAGATGT-G--TC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-CGAGATGTAGAACC
*
23563477 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
23563509 TATTATACCC
Statistics
Matches: 141, Mismatches: 15, Indels: 26
0.77 0.08 0.14
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 79 0.56
47 31 0.22
48 1 0.01
49 2 0.01
50 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGAGATGTAGAACC
Found at i:23564671 original size:21 final size:20
Alignment explanation
Indices: 23564645--23564684 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
23564635 TCGAATTGGT
23564645 CACACGAGCATGTTGCCCCTC
1 CACACGAGCATG-TGCCCCTC
* *
23564666 CACACGGGCGTGTGCCCCT
1 CACACGAGCATGTGCCCCT
23564685 GTGTCTAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.15, C:0.42, G:0.25, T:0.17
Consensus pattern (20 bp):
CACACGAGCATGTGCCCCTC
Found at i:23572760 original size:2 final size:2
Alignment explanation
Indices: 23572753--23572799 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
23572743 TTTCATCAAC
23572753 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23572795 TA TA T
1 TA TA T
23572800 TTTATTGAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:23576553 original size:27 final size:27
Alignment explanation
Indices: 23576522--23576580 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
23576512 ATTGTTTTCG
*
23576522 AATTTTTACTAGGGATAAAATTGTCAA
1 AATTTTTACTAGGGATAAAATCGTCAA
* * *
23576549 AA-TTTTATTGGGGGTAAAATCGTCAA
1 AATTTTTACTAGGGATAAAATCGTCAA
23576575 AATTTT
1 AATTTT
23576581 ACTCGAGGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (27 bp):
AATTTTTACTAGGGATAAAATCGTCAA
Found at i:23576590 original size:26 final size:26
Alignment explanation
Indices: 23576537--23576594 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
23576527 TTACTAGGGA
* * * *
23576537 TAAAATTGTCAAAATTTTATTGGGGG
1 TAAAATCGTCAAAATTTTACTCGAGG
23576563 TAAAATCGTCAAAATTTTACTCGAGG
1 TAAAATCGTCAAAATTTTACTCGAGG
23576589 TAAAAT
1 TAAAAT
23576595 AGGGATAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (26 bp):
TAAAATCGTCAAAATTTTACTCGAGG
Found at i:23584097 original size:50 final size:51
Alignment explanation
Indices: 23584020--23584148 Score: 199
Period size: 50 Copynumber: 2.5 Consensus size: 51
23584010 GACCATGGCA
23584020 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAA-GAAAAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAA-TG
*
23584071 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAATG
* * *
23584121 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
23584149 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
50 43 0.60
51 29 0.40
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGAAAAATG
Found at i:23584166 original size:31 final size:31
Alignment explanation
Indices: 23584124--23584303 Score: 279
Period size: 31 Copynumber: 5.8 Consensus size: 31
23584114 ACAAATGACA
*
23584124 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
23584155 AGTGAATAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
23584186 AGTGAAAAGTGGTAGTTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
23584217 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
23584248 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
23584279 AGTGAATAGTAGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
23584304 AAGTGACAAG
Statistics
Matches: 137, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 137 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:23584396 original size:47 final size:47
Alignment explanation
Indices: 23584327--23584491 Score: 164
Period size: 47 Copynumber: 3.6 Consensus size: 47
23584317 CAAGTGATTT
* *
23584327 CTGTATAAGACCATATCTGGGATATGGCATCAGTGTGATATATGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * *
23584374 CTGTATAAGACCATATCTGGGATATGGCATTAGTGAGATATGTGATT
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * *
23584421 C-GTGTAAGAGCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATG-ATA
* * *
23584463 -TGTGTAAGACCATAGCTGGGCTATGGCAT
1 CTGTATAAGACCATATCTGGGATATGGCAT
23584492 AATTATGTGA
Statistics
Matches: 103, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
41 7 0.07
42 29 0.28
46 24 0.23
47 43 0.42
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:23584477 original size:42 final size:43
Alignment explanation
Indices: 23584422--23584536 Score: 153
Period size: 42 Copynumber: 2.7 Consensus size: 43
23584412 TATGTGATTC
* *
23584422 GTGTAAGAGCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* *
23584464 GTGTAAGACCATAGCTGGGCTATGGCAT-AATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
* **
23584506 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGCTGGGCTATGGCATCGA
23584537 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 61 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCGATTATATGAAGAT
Found at i:23588500 original size:31 final size:31
Alignment explanation
Indices: 23588462--23588523 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
23588452 GTGGGACTAG
* *
23588462 TAAGTTTATAATTTGGTCACTCAATTATAAA
1 TAAGTTTACAAATTGGTCACTCAATTATAAA
* * *
23588493 TAAGTTTACAAATTGGTTACTTAATTTTAAA
1 TAAGTTTACAAATTGGTCACTCAATTATAAA
23588524 AAATTATAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (31 bp):
TAAGTTTACAAATTGGTCACTCAATTATAAA
Found at i:23595795 original size:42 final size:42
Alignment explanation
Indices: 23595736--23595860 Score: 182
Period size: 42 Copynumber: 3.0 Consensus size: 42
23595726 ATAGTCATAT
*
23595736 TCGGGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATA
1 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
*
23595778 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATG
1 TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
* * *
23595820 TCAGGC-CTATTACCTAGCAGG-TTCTATGCCGGTGTATTATA
1 TCGGGCTTTATTGCCTAGCAGGCTT-TATGCCGGTGTATTATA
23595861 CTAGGCTTAT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
40 2 0.03
41 29 0.38
42 45 0.59
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.37
Consensus pattern (42 bp):
TCGGGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATA
Found at i:23595848 original size:41 final size:42
Alignment explanation
Indices: 23595739--23595879 Score: 173
Period size: 41 Copynumber: 3.4 Consensus size: 42
23595729 GTCATATTCG
* * *
23595739 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCG
1 GGCTCTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATCA
* *
23595781 GGCTTTATTGCCTAGCAGGCTTTATGCCGGTGTATTATGTCA
1 GGCTCTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATCA
*
23595823 GGC-CTATTACCTAGCAGG-TTCTATGCCGGTGTATTATA-CTA
1 GGCTCTATTGCCTAGCAGGCTT-TATGCCGGTGTATTATATC-A
*
23595864 GGCT-TATCGCCTAGCA
1 GGCTCTATTGCCTAGCA
23595880 AATTTTATGT
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
40 3 0.03
41 43 0.49
42 42 0.48
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (42 bp):
GGCTCTATTGCCTAGCAGGCTTTATGCCGGTGTATTATATCA
Found at i:23597456 original size:8 final size:8
Alignment explanation
Indices: 23597443--23597485 Score: 86
Period size: 8 Copynumber: 5.4 Consensus size: 8
23597433 ATCGGCAAAA
23597443 GCCGAAAT
1 GCCGAAAT
23597451 GCCGAAAT
1 GCCGAAAT
23597459 GCCGAAAT
1 GCCGAAAT
23597467 GCCGAAAT
1 GCCGAAAT
23597475 GCCGAAAT
1 GCCGAAAT
23597483 GCC
1 GCC
23597486 AAAAAGTCGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.35, C:0.28, G:0.26, T:0.12
Consensus pattern (8 bp):
GCCGAAAT
Found at i:23597941 original size:28 final size:28
Alignment explanation
Indices: 23597909--23598015 Score: 116
Period size: 27 Copynumber: 3.9 Consensus size: 28
23597899 AGGAAGCGTC
*
23597909 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACAAATTATCTGAT
* *
23597937 CTGGTGGCTCTACCACATA-TATCTG-T
1 CTGGTGGCTCTGCCACAAATTATCTGAT
23597963 CCTGGTGGCTCTGCCAC-AATTATCTGTAT
1 -CTGGTGGCTCTGCCACAAATTATCTG-AT
* *
23597992 CTGGTGACTCTGTCAC--ATTATCTG
1 CTGGTGGCTCTGCCACAAATTATCTG
23598016 TTCTAGTAGC
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.03
27 35 0.51
28 30 0.44
29 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.21, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAAATTATCTGAT
Found at i:23597994 original size:55 final size:54
Alignment explanation
Indices: 23597906--23598016 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 54
23597896 TGGAGGAAGC
*
23597906 GTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTACCACAT-TATCT
* **
23597961 GTCCTGGTGGCTCTGCCAC-AATTATCTGTATCTGGTGACTCTGTCACATTATCT
1 GTCCTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTACCACATTATCT
23598015 GT
1 GT
23598017 TCTAGTAGCC
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
54 16 0.31
55 35 0.69
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTACCACATTATCT
Found at i:23605335 original size:16 final size:16
Alignment explanation
Indices: 23605299--23605343 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
23605289 ACTAGATCGG
23605299 CAAAA-GCCGAAAAGC
1 CAAAATGCCGAAAAGC
* *
23605314 CAAAATGTCGAAATGC
1 CAAAATGCCGAAAAGC
*
23605330 CGAAATGCCGAAAA
1 CAAAATGCCGAAAA
23605344 ACCAGTATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
15 5 0.21
16 19 0.79
ACGTcount: A:0.49, C:0.22, G:0.20, T:0.09
Consensus pattern (16 bp):
CAAAATGCCGAAAAGC
Found at i:23605820 original size:27 final size:28
Alignment explanation
Indices: 23605762--23605850 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 28
23605752 AGGAAGCGTC
* * *
23605762 CTGGTGGCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCACATATTATCTGTT
23605790 CTGGTGGCTCTGCCACATA-TATCTGTT
1 CTGGTGGCTCTGCCACATATTATCTGTT
*
23605817 CTGGTGGCTCTGCCACA-ATTATTTGTAT
1 CTGGTGGCTCTGCCACATATTATCTGT-T
23605845 CTGGTG
1 CTGGTG
23605851 ACTTTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 1 0.02
27 30 0.55
28 24 0.44
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACATATTATCTGTT
Found at i:23605847 original size:55 final size:54
Alignment explanation
Indices: 23605762--23605870 Score: 148
Period size: 55 Copynumber: 2.0 Consensus size: 54
23605752 AGGAAGCGTC
*
23605762 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACAT-TATCTGTT
* * * *
23605817 CTGGTGGCTCTGCCAC-AATTATTTGTATCTGGTGACTTTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCTG-ATCTGGTGACTCTGCCACATTATCTGTT
23605871 ATGGCAGCCA
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
54 16 0.33
55 32 0.67
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATTATCTGTT
Found at i:23607592 original size:2 final size:2
Alignment explanation
Indices: 23607585--23607618 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
23607575 ATTCGGCTAT
23607585 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23607619 CCTAGGTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23612688 original size:12 final size:12
Alignment explanation
Indices: 23612671--23612696 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23612661 AAATTAAATA
23612671 ATATGTTATAAT
1 ATATGTTATAAT
23612683 ATATGTTATAAT
1 ATATGTTATAAT
23612695 AT
1 AT
23612697 TTATATCATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
ATATGTTATAAT
Found at i:23613820 original size:41 final size:42
Alignment explanation
Indices: 23613600--23613824 Score: 296
Period size: 42 Copynumber: 5.4 Consensus size: 42
23613590 GTGATATTCG
* *
23613600 GGCTTTATTGCCTAGCAGGCTTTGTGCCAGTGTATTATATCG
1 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCA
*
23613642 GGCATTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCA
1 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCA
* * *
23613684 GGCTTTAATGCCTAGCAGGCTTTGTGCTGGTGTATTATATCG
1 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCA
* * *
23613726 GGCTTTATTGCCTAGCAGGCTTTATGCCGATGTATTATGTCA
1 GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCA
* *
23613768 GGC-CTATTGCCTAGCAGG-TTCTATGCCGGTGTATTATA-CTA
1 GGCTTTATTGCCTAGCAGGCTT-TGTGCCGGTGTATTATATC-A
*
23613809 GGC-TTAATGCCTAGCA
1 GGCTTTATTGCCTAGCA
23613825 AATTTTATGT
Statistics
Matches: 163, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
40 3 0.02
41 44 0.27
42 116 0.71
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (42 bp):
GGCTTTATTGCCTAGCAGGCTTTGTGCCGGTGTATTATATCA
Found at i:23617744 original size:20 final size:20
Alignment explanation
Indices: 23617716--23617755 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
23617706 ATACATATAT
*
23617716 AAACTACTAAAATTGGAATC
1 AAACGACTAAAATTGGAATC
23617736 AAACGACTAAAATTGGAATC
1 AAACGACTAAAATTGGAATC
23617756 GAGCTATGTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.23
Consensus pattern (20 bp):
AAACGACTAAAATTGGAATC
Found at i:23621474 original size:46 final size:46
Alignment explanation
Indices: 23621155--23621469 Score: 479
Period size: 46 Copynumber: 6.8 Consensus size: 46
23621145 TTTGACATGA
* * * * *
23621155 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGC
*
23621201 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGC
*
23621247 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGC
*
23621293 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGC
* *
23621339 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGC
* * * *
23621385 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGC
*
23621431 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
23621470 ATCAGAGAGC
Statistics
Matches: 257, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
45 4 0.02
46 253 0.98
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGC
Found at i:23623587 original size:13 final size:13
Alignment explanation
Indices: 23623569--23623596 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23623559 ATTCATGTGT
23623569 ATATTATTAGTAC
1 ATATTATTAGTAC
23623582 ATATTATTAGTAC
1 ATATTATTAGTAC
23623595 AT
1 AT
23623597 TTGTATCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (13 bp):
ATATTATTAGTAC
Found at i:23624766 original size:24 final size:24
Alignment explanation
Indices: 23624739--23624784 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
23624729 CATAAAACAC
23624739 ATAAAAATGGTCATTTTATTCATT
1 ATAAAAATGGTCATTTTATTCATT
23624763 ATAAAAATGGTCATTTTATTCA
1 ATAAAAATGGTCATTTTATTCA
23624785 CAATGTCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (24 bp):
ATAAAAATGGTCATTTTATTCATT
Found at i:23625409 original size:34 final size:34
Alignment explanation
Indices: 23625371--23625451 Score: 144
Period size: 34 Copynumber: 2.4 Consensus size: 34
23625361 ATATCAACAT
23625371 TAATATAAATCAAATAGATATGTAGCAGACACAA
1 TAATATAAATCAAATAGATATGTAGCAGACACAA
23625405 TAATATAAATCAAATAGATATGTAGCAGACACAA
1 TAATATAAATCAAATAGATATGTAGCAGACACAA
* *
23625439 TAATGTGAATCAA
1 TAATATAAATCAA
23625452 GAATATTCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.52, C:0.11, G:0.12, T:0.25
Consensus pattern (34 bp):
TAATATAAATCAAATAGATATGTAGCAGACACAA
Found at i:23643960 original size:17 final size:17
Alignment explanation
Indices: 23643938--23643989 Score: 67
Period size: 17 Copynumber: 3.3 Consensus size: 17
23643928 ACTAAACCGA
23643938 CCACTAACTCCATCACC
1 CCACTAACTCCATCACC
23643955 CCACTAA----ATCACC
1 CCACTAACTCCATCACC
*
23643968 CCACTAACTCCACCACC
1 CCACTAACTCCATCACC
23643985 CCACT
1 CCACT
23643990 TGCCACTAAC
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
13 13 0.43
17 17 0.57
ACGTcount: A:0.31, C:0.54, G:0.00, T:0.15
Consensus pattern (17 bp):
CCACTAACTCCATCACC
Found at i:23643967 original size:13 final size:13
Alignment explanation
Indices: 23643949--23643974 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23643939 CACTAACTCC
23643949 ATCACCCCACTAA
1 ATCACCCCACTAA
23643962 ATCACCCCACTAA
1 ATCACCCCACTAA
23643975 CTCCACCACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (13 bp):
ATCACCCCACTAA
Found at i:23643974 original size:30 final size:29
Alignment explanation
Indices: 23643922--23644028 Score: 109
Period size: 30 Copynumber: 3.8 Consensus size: 29
23643912 ATCCAATTAG
*
23643922 CACCCCACTAAA-CCGACCACTAACTCCAT
1 CACCCCACTAAATCC-CCCACTAACTCCAT
*
23643951 CACCCCACTAAATCACCCCACTAACTCCAC
1 CACCCCACTAAATC-CCCCACTAACTCCAT
* *
23643981 CACCCCACT---T--GCCACTAACTCTAT
1 CACCCCACTAAATCCCCCACTAACTCCAT
23644005 CACCCCACTAAATCACCCCACTAA
1 CACCCCACTAAATC-CCCCACTAA
23644029 ACTTGCAACT
Statistics
Matches: 64, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
24 20 0.31
27 2 0.03
29 12 0.19
30 29 0.45
31 1 0.02
ACGTcount: A:0.33, C:0.50, G:0.02, T:0.16
Consensus pattern (29 bp):
CACCCCACTAAATCCCCCACTAACTCCAT
Found at i:23643995 original size:24 final size:24
Alignment explanation
Indices: 23643968--23644013 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
23643958 CTAAATCACC
23643968 CCACTAACTCCACCACCCCACTTG
1 CCACTAACTCCACCACCCCACTTG
* *
23643992 CCACTAACTCTATCACCCCACT
1 CCACTAACTCCACCACCCCACT
23644014 AAATCACCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.52, G:0.02, T:0.20
Consensus pattern (24 bp):
CCACTAACTCCACCACCCCACTTG
Found at i:23644021 original size:13 final size:13
Alignment explanation
Indices: 23644003--23644070 Score: 64
Period size: 13 Copynumber: 5.0 Consensus size: 13
23643993 CACTAACTCT
23644003 ATCACCCCACTAA
1 ATCACCCCACTAA
23644016 ATCACCCCACTAA
1 ATCACCCCACTAA
* ** **
23644029 ACTTGCAACTAACTCC
1 A--T-CACCCCACTAA
23644045 ATCACCCCACTAA
1 ATCACCCCACTAA
23644058 ATCACCCCACTAA
1 ATCACCCCACTAA
23644071 CTCCATTACC
Statistics
Matches: 42, Mismatches: 10, Indels: 6
0.72 0.17 0.10
Matches are distributed among these distances:
13 33 0.79
14 1 0.02
15 1 0.02
16 7 0.17
ACGTcount: A:0.37, C:0.44, G:0.01, T:0.18
Consensus pattern (13 bp):
ATCACCCCACTAA
Found at i:23644042 original size:42 final size:42
Alignment explanation
Indices: 23643987--23644070 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
23643977 CCACCACCCC
* *
23643987 ACTTGCCACTAACTCTATCACCCCACTAAATCACCCCACTAA
1 ACTTGCAACTAACTCCATCACCCCACTAAATCACCCCACTAA
23644029 ACTTGCAACTAACTCCATCACCCCACTAAATCACCCCACTAA
1 ACTTGCAACTAACTCCATCACCCCACTAAATCACCCCACTAA
23644071 CTCCATTACC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.43, G:0.02, T:0.20
Consensus pattern (42 bp):
ACTTGCAACTAACTCCATCACCCCACTAAATCACCCCACTAA
Found at i:23644051 original size:29 final size:30
Alignment explanation
Indices: 23644016--23644085 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
23644006 ACCCCACTAA
***
23644016 ATCACCCCACTAAA-CTTGCAACTAACTCC
1 ATCACCCCACTAAATCACCCAACTAACTCC
*
23644045 ATCACCCCACTAAATCACCCCACTAACTCC
1 ATCACCCCACTAAATCACCCAACTAACTCC
*
23644075 ATTACCCCACT
1 ATCACCCCACT
23644086 TGCCTGCAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 14 0.40
30 21 0.60
ACGTcount: A:0.33, C:0.46, G:0.01, T:0.20
Consensus pattern (30 bp):
ATCACCCCACTAAATCACCCAACTAACTCC
Found at i:23644083 original size:17 final size:17
Alignment explanation
Indices: 23644036--23644085 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 17
23644026 TAAACTTGCA
23644036 ACTAACTCCATCACCCC
1 ACTAACTCCATCACCCC
23644053 ACTAA----ATCACCCC
1 ACTAACTCCATCACCCC
*
23644066 ACTAACTCCATTACCCC
1 ACTAACTCCATCACCCC
23644083 ACT
1 ACT
23644086 TGCCTGCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
13 13 0.46
17 15 0.54
ACGTcount: A:0.32, C:0.48, G:0.00, T:0.20
Consensus pattern (17 bp):
ACTAACTCCATCACCCC
Found at i:23644643 original size:21 final size:21
Alignment explanation
Indices: 23644596--23644643 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
23644586 TCTTTTATGA
23644596 ATATTTTTTAAATATTATATT
1 ATATTTTTTAAATATTATATT
*
23644617 ATTATTTTTGTATATATTAT-TT
1 A-TATTTTT-TAAATATTATATT
23644639 ATATT
1 ATATT
23644644 AAGCTATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.21
22 10 0.42
23 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (21 bp):
ATATTTTTTAAATATTATATT
Found at i:23648543 original size:40 final size:39
Alignment explanation
Indices: 23648378--23648561 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
23648368 AAATTGAATG
* * *
23648378 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
23648418 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
23648458 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
23648498 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
23648537 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
23648562 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:23648586 original size:80 final size:81
Alignment explanation
Indices: 23648418--23648606 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
23648408 GCTGGAAATT
* * * *
23648418 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
23648483 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
23648499 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
23648562 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
23648578 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
23648607 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:23656661 original size:40 final size:39
Alignment explanation
Indices: 23656496--23656679 Score: 138
Period size: 40 Copynumber: 4.6 Consensus size: 39
23656486 AAATTGAATG
* * *
23656496 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT--T
1 ATATCCGGGCTAAGACCCGAAGGC-ATT-TG-TGCAAATCGT
* * * * * *
23656536 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-T
* * * * *
23656576 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATC-GT
*
23656616 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
* * *
23656655 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
23656680 CTTGGTGCGG
Statistics
Matches: 113, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
37 4 0.04
38 2 0.02
39 3 0.03
40 104 0.92
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGT
Found at i:23656704 original size:80 final size:81
Alignment explanation
Indices: 23656536--23656724 Score: 186
Period size: 80 Copynumber: 2.4 Consensus size: 81
23656526 GCTGGAAATT
* * * *
23656536 ATAACCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTACATCCGGGCTAAGACCCGAAGGCA
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
*
23656601 TTCGTGCGAGTCATTC
66 TTCGTGCGAGTCATCC
* * * * * *
23656617 -TATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCG-TGATATCCGGGTTAAGTCCCGTAGGC
1 ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCT-ACATCCGGGCTAAGACCCGAAGGC
* * * *
23656680 CTTGGTGCGGGTTA-CC
65 ATTCGTGCGAGTCATCC
* * *
23656696 ATAACCGGGCTATGTCCCGAAGGCGATTG
1 ATAACCGGGCTAAGACCCGAAGGCAATTG
23656725 ATCGAGTAGC
Statistics
Matches: 86, Mismatches: 20, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
79 2 0.02
80 84 0.98
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (81 bp):
ATAACCGGGCTAAGACCCGAAGGCAATTGTGCAAATCGCTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCATCC
Found at i:23658070 original size:18 final size:18
Alignment explanation
Indices: 23658047--23658085 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
23658037 TCAATGGATG
23658047 GGCAAAACAAGTGAACTT
1 GGCAAAACAAGTGAACTT
23658065 GGCAAAACAAGTGAACTT
1 GGCAAAACAAGTGAACTT
23658083 GGC
1 GGC
23658086 TTGTTAACCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.15
Consensus pattern (18 bp):
GGCAAAACAAGTGAACTT
Found at i:23663838 original size:33 final size:33
Alignment explanation
Indices: 23663795--23663917 Score: 131
Period size: 33 Copynumber: 3.8 Consensus size: 33
23663785 TTTCCGATGG
* * ** *
23663795 ACATTTCCTTTTCTAGTTGTACACTTGAGGTGC
1 ACATTCCCTTTTCAAGTTGTACACACGAAGTGC
* *
23663828 ACATTCCCTTTTCAAGTGGTACACACGAAGTGT
1 ACATTCCCTTTTCAAGTTGTACACACGAAGTGC
* * *
23663861 ACATACCCTTTTCAATTTGTACACACAAAGTGC
1 ACATTCCCTTTTCAAGTTGTACACACGAAGTGC
**
23663894 ACATAGCCTTTTCAAG-TGTACACA
1 ACATTCCCTTTTCAAGTTGTACACA
23663918 TATAGTGTAC
Statistics
Matches: 76, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
32 8 0.11
33 68 0.89
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (33 bp):
ACATTCCCTTTTCAAGTTGTACACACGAAGTGC
Found at i:23663936 original size:32 final size:33
Alignment explanation
Indices: 23663834--23663995 Score: 123
Period size: 33 Copynumber: 4.9 Consensus size: 33
23663824 GTGCACATTC
* * * * **
23663834 CCTTTTCAAGTGGTACACACGAAGTGTACATAC
1 CCTTTTCAAGTGATACACACAAAGTATACCTTT
* ** * **
23663867 CCTTTTCAATTTG-TACACACAAAGTGCACATAG
1 CCTTTTCAA-GTGATACACACAAAGTATACCTTT
* * *
23663900 CCTTTTCAAGTG-TACACATATAGTGTACCTTT
1 CCTTTTCAAGTGATACACACAAAGTATACCTTT
*
23663932 CCTTTTCAAGTGATATACACAAAGTATACCTTT
1 CCTTTTCAAGTGATACACACAAAGTATACCTTT
* *
23663965 CCTTTTCATA-TGGTATACACAAAGTATACCT
1 CCTTTTCA-AGTGATACACACAAAGTATACCT
23663996 AAAATTTTCA
Statistics
Matches: 110, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
32 28 0.25
33 79 0.72
34 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (33 bp):
CCTTTTCAAGTGATACACACAAAGTATACCTTT
Found at i:23663952 original size:65 final size:66
Alignment explanation
Indices: 23663824--23663956 Score: 155
Period size: 65 Copynumber: 2.0 Consensus size: 66
23663814 TACACTTGAG
* *
23663824 GTGCACATTCCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATTTGTACACACAA
1 GTGCACATACCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATGTGTACACACAA
23663889 A
66 A
* * * ** *
23663890 GTGCACATAGCCTTTTCAAGT-GTACACA-TATAGTGTACCTTTCCTTTTCAA-GTGATATACAC
1 GTGCACATACCCTTTTCAAGTGGTACACACGA-AGTGTACATACCCTTTTCAATGTG-TACACAC
23663952 AAA
64 AAA
23663955 GT
1 GT
23663957 ATACCTTTCC
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
64 3 0.05
65 35 0.61
66 19 0.33
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.32
Consensus pattern (66 bp):
GTGCACATACCCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATGTGTACACACAA
A
Found at i:23664727 original size:20 final size:21
Alignment explanation
Indices: 23664689--23664730 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23664679 AAGTGGTTTA
*
23664689 TCTATCAATAATCTTTCATTT
1 TCTATCAAAAATCTTTCATTT
23664710 TCTATCAAAAAT-TTTCATTT
1 TCTATCAAAAATCTTTCATTT
23664730 T
1 T
23664731 ACAGCAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.52
Consensus pattern (21 bp):
TCTATCAAAAATCTTTCATTT
Found at i:23668026 original size:40 final size:40
Alignment explanation
Indices: 23667964--23668080 Score: 189
Period size: 40 Copynumber: 2.9 Consensus size: 40
23667954 CCCAGTTATA
* * * *
23667964 GTAATTCGCGCAAATGCTTTCGGGACTTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
*
23668004 GTAACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTG
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
23668044 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
1 GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGAT
23668081 ATCATTCGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
GTAACTCGCACAAATGCCTTCGGGAATTAACCCGGATTTG
Found at i:23668027 original size:80 final size:80
Alignment explanation
Indices: 23667927--23668080 Score: 186
Period size: 80 Copynumber: 1.9 Consensus size: 80
23667917 AGATATAGCT
* * * * * * * *
23667927 ACTCGCTCGATTGTCTTCGGGACA-TAGCCCAG-TTATAGTAATTCGCGCAAATGCTTTCGGGAC
1 ACTCGCACAATTGCCTTCGGGA-ATTAACCCAGATT-TAGTAACTCGCACAAATGCCTTCGGGAA
23667990 TTAACCCGGATTTGGTA
64 TTAACCCGGATTTGGTA
* *
23668007 ACTCGCACAATTGCCTTCGGGAATTAACCCGGATTTGGTAACTCGCACAAATGCCTTCGGGAATT
1 ACTCGCACAATTGCCTTCGGGAATTAACCCAGATTTAGTAACTCGCACAAATGCCTTCGGGAATT
23668072 AACCCGGAT
66 AACCCGGAT
23668081 ATCATTCGAA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
79 1 0.02
80 59 0.95
81 2 0.03
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (80 bp):
ACTCGCACAATTGCCTTCGGGAATTAACCCAGATTTAGTAACTCGCACAAATGCCTTCGGGAATT
AACCCGGATTTGGTA
Found at i:23675983 original size:40 final size:39
Alignment explanation
Indices: 23675939--23676076 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 39
23675929 GCTCGATTGT
* * * *
23675939 CTTCGGGACATAGCCCGGTTATAGTAATTCGCGCAAATGC
1 CTTCGGGACATAACCCGGTT-TGGTAACTCGCACAAATGC
* *
23675979 CTTCGGGACTTAACCCGGATTTGGTAACTCGCACAATTGC
1 CTTCGGGACATAACCCGG-TTTGGTAACTCGCACAAATGC
*
23676019 CTTCGGGA-ATTAACCCAGATTTGGTAACTCGCACAAATGC
1 CTTCGGGACA-TAACCC-GGTTTGGTAACTCGCACAAATGC
23676059 CTTCGGGA-ATTAACCCGG
1 CTTCGGGACA-TAACCCGG
23676077 ATATCATTCG
Statistics
Matches: 85, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 81 0.95
41 3 0.04
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (39 bp):
CTTCGGGACATAACCCGGTTTGGTAACTCGCACAAATGC
Found at i:23678136 original size:26 final size:26
Alignment explanation
Indices: 23678107--23678157 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
23678097 GAAAGTAAAA
* *
23678107 AATATTATTATGAGAGTATTTTTATC
1 AATATTATTATAAGAATATTTTTATC
23678133 AATATTATTATAAGAATATTTTTAT
1 AATATTATTATAAGAATATTTTTAT
23678158 ATTTTGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (26 bp):
AATATTATTATAAGAATATTTTTATC
Found at i:23678860 original size:23 final size:24
Alignment explanation
Indices: 23678815--23678870 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 24
23678805 TTAAACATAT
* *
23678815 TTTTAAAAAATTAATTAATTGAAAA
1 TTTTAAAAAATT-ATGAAGTGAAAA
*
23678840 TTTTAAAAAATT-TGAAGTGAAAG
1 TTTTAAAAAATTATGAAGTGAAAA
*
23678863 TTTGAAAA
1 TTTTAAAA
23678871 TTTTAACCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 15 0.56
25 12 0.44
ACGTcount: A:0.52, C:0.00, G:0.11, T:0.38
Consensus pattern (24 bp):
TTTTAAAAAATTATGAAGTGAAAA
Found at i:23682415 original size:28 final size:28
Alignment explanation
Indices: 23682375--23682433 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
23682365 CTCATATGAG
23682375 TATGTAAACGGGATCCTTTTTCGAGCCA
1 TATGTAAACGGGATCCTTTTTCGAGCCA
23682403 TATGTAAACGGGATCCTTTTTCGAGCCA
1 TATGTAAACGGGATCCTTTTTCGAGCCA
23682431 TAT
1 TAT
23682434 AACGAGAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (28 bp):
TATGTAAACGGGATCCTTTTTCGAGCCA
Found at i:23682552 original size:49 final size:50
Alignment explanation
Indices: 23682488--23682629 Score: 148
Period size: 49 Copynumber: 2.9 Consensus size: 50
23682478 CTGAGTATCG
* * * **
23682488 GGAAGCTCATAAGAGCTATAAATCAGGAAGCTCATGGGAGCCAA-TATTA
1 GGAAGCTCGTGAGAGCCATAAATCAGGAAGCTCATGAAAGCCAATTATTA
* *
23682537 GGAAGCTTCG-GAGAGCCATTAATCGGGAAGCTCATGAAAGCCAATTATTA
1 GGAAGC-TCGTGAGAGCCATAAATCAGGAAGCTCATGAAAGCCAATTATTA
* *
23682587 GGAAGCTCGTGAGAGCCGA-ATAA-CAGGAAGCTCAAGAGAGCCA
1 GGAAGCTCGTGAGAGCC-ATA-AATCAGGAAGCTCATGAAAGCCA
23682630 TATATCGGGA
Statistics
Matches: 77, Mismatches: 11, Indels: 9
0.79 0.11 0.09
Matches are distributed among these distances:
49 37 0.48
50 37 0.48
51 3 0.04
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (50 bp):
GGAAGCTCGTGAGAGCCATAAATCAGGAAGCTCATGAAAGCCAATTATTA
Found at i:23682578 original size:25 final size:25
Alignment explanation
Indices: 23682488--23682652 Score: 115
Period size: 25 Copynumber: 6.6 Consensus size: 25
23682478 CTGAGTATCG
* * *
23682488 GGAAGCTCATAAGAGCTATAAATCA
1 GGAAGCTCATGAGAGCCATTAATCA
* * *
23682513 GGAAGCTCATGGGAGCCAAT-ATTA
1 GGAAGCTCATGAGAGCCATTAATCA
* *
23682537 GGAAGCTTC-GGAGAGCCATTAATCG
1 GGAAGC-TCATGAGAGCCATTAATCA
* *
23682562 GGAAGCTCATGAAAGCCAATT-ATTA
1 GGAAGCTCATGAGAGCC-ATTAATCA
* *
23682587 GGAAGCTCGTGAGAGCCGAATAA-CA
1 GGAAGCTCATGAGAGCC-ATTAATCA
* *
23682612 GGAAGCTCAAGAGAGCCA-TATATCG
1 GGAAGCTCATGAGAGCCATTA-ATCA
* *
23682637 GGATGCTCATAAGAGC
1 GGAAGCTCATGAGAGC
23682653 TTTGGTGAGT
Statistics
Matches: 107, Mismatches: 26, Indels: 14
0.73 0.18 0.10
Matches are distributed among these distances:
23 2 0.02
24 21 0.20
25 80 0.75
26 4 0.04
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (25 bp):
GGAAGCTCATGAGAGCCATTAATCA
Found at i:23682602 original size:50 final size:49
Alignment explanation
Indices: 23682488--23682634 Score: 163
Period size: 50 Copynumber: 3.0 Consensus size: 49
23682478 CTGAGTATCG
* * * * *
23682488 GGAAGCTCATAAGAGCTATAAATCAGGAAGCTCATGGGAGCCAATATTA
1 GGAAGCTCGTGAGAGCCATTAATCAGGAAGCTCATGAGAGCCAATATTA
* *
23682537 GGAAGCTTCG-GAGAGCCATTAATCGGGAAGCTCATGAAAGCCAATTATTA
1 GGAAGC-TCGTGAGAGCCATTAATCAGGAAGCTCATGAGAGCCAA-TATTA
* *
23682587 GGAAGCTCGTGAGAGCCGAATAA-CAGGAAGCTCAAGAGAGCCATATAT
1 GGAAGCTCGTGAGAGCC-ATTAATCAGGAAGCTCATGAGAGCCA-ATAT
23682635 CGGGATGCTC
Statistics
Matches: 82, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
49 37 0.45
50 40 0.49
51 5 0.06
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.19
Consensus pattern (49 bp):
GGAAGCTCGTGAGAGCCATTAATCAGGAAGCTCATGAGAGCCAATATTA
Found at i:23689168 original size:12 final size:12
Alignment explanation
Indices: 23689151--23689175 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23689141 ATATGGTAAT
23689151 TGATAATTAAAA
1 TGATAATTAAAA
23689163 TGATAATTAAAA
1 TGATAATTAAAA
23689175 T
1 T
23689176 AAAACAAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (12 bp):
TGATAATTAAAA
Found at i:23690096 original size:29 final size:28
Alignment explanation
Indices: 23690064--23690118 Score: 92
Period size: 29 Copynumber: 1.9 Consensus size: 28
23690054 GCGAGATAAA
*
23690064 CTGATTTGGCTTCGGGCCATGCATATCGG
1 CTGATTTGGCTTCAGGCCATG-ATATCGG
23690093 CTGATTTGGCTTCAGGCCATGATATC
1 CTGATTTGGCTTCAGGCCATGATATC
23690119 AGAATTTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 5 0.20
29 20 0.80
ACGTcount: A:0.16, C:0.24, G:0.27, T:0.33
Consensus pattern (28 bp):
CTGATTTGGCTTCAGGCCATGATATCGG
Found at i:23694004 original size:37 final size:37
Alignment explanation
Indices: 23693962--23694087 Score: 103
Period size: 37 Copynumber: 3.2 Consensus size: 37
23693952 TATATACAAA
23693962 TATCATCATCTCATACTTTCATATATCACTTGTCATG
1 TATCATCATCTCATACTTTCATATATCACTTGTCATG
** * ** **
23693999 TATCATCATTTTCTTGTAC-TTCAGATGGATATGTA-TAATCAAA
1 TATCATCA---TCTCATACTTTC--AT--ATAT-CACTTGTCATG
23694042 TATCATCATCTCATACTTTCATATATCACTTGTCATG
1 TATCATCATCTCATACTTTCATATATCACTTGTCATG
23694079 TATCATCAT
1 TATCATCAT
23694088 TTTCTTGTAT
Statistics
Matches: 65, Mismatches: 14, Indels: 20
0.66 0.14 0.20
Matches are distributed among these distances:
36 1 0.02
37 25 0.38
39 5 0.08
40 12 0.18
41 5 0.08
43 16 0.25
44 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (37 bp):
TATCATCATCTCATACTTTCATATATCACTTGTCATG
Found at i:23694019 original size:40 final size:40
Alignment explanation
Indices: 23693975--23694101 Score: 104
Period size: 37 Copynumber: 3.2 Consensus size: 40
23693965 CATCATCTCA
23693975 TACTTTCATATATCACTTGTCATGTATCATCATTTTCTTG
1 TACTTTCATATATCACTTGTCATGTATCATCATTTTCTTG
* ** ** **
23694015 TAC-TTCAGATGGATATGTA-TAATCAAATATCATCA---TCTCA
1 TACTTTC--AT--ATAT-CACTTGTCATGTATCATCATTTTCTTG
23694055 TACTTTCATATATCACTTGTCATGTATCATCATTTTCTTG
1 TACTTTCATATATCACTTGTCATGTATCATCATTTTCTTG
23694095 TA-TTTCA
1 TACTTTCA
23694102 GATGGATATG
Statistics
Matches: 63, Mismatches: 14, Indels: 21
0.64 0.14 0.21
Matches are distributed among these distances:
36 1 0.02
37 16 0.25
39 10 0.16
40 14 0.22
41 5 0.08
43 16 0.25
44 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.08, T:0.46
Consensus pattern (40 bp):
TACTTTCATATATCACTTGTCATGTATCATCATTTTCTTG
Found at i:23694091 original size:80 final size:80
Alignment explanation
Indices: 23693958--23694117 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
23693948 TTTCTATATA
23693958 CAAATATCATCATCTCATACTTTCATATATCACTTGTCATGTATCATCATTTTCTTGTACTTCAG
1 CAAATATCATCATCTCATACTTTCATATATCACTTGTCATGTATCATCATTTTCTTGTACTTCAG
23694023 ATGGATATGTATAAT
66 ATGGATATGTATAAT
*
23694038 CAAATATCATCATCTCATACTTTCATATATCACTTGTCATGTATCATCATTTTCTTGTATTTCAG
1 CAAATATCATCATCTCATACTTTCATATATCACTTGTCATGTATCATCATTTTCTTGTACTTCAG
23694103 ATGGATATGTATAAT
66 ATGGATATGTATAAT
23694118 AACTCATTTT
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.43
Consensus pattern (80 bp):
CAAATATCATCATCTCATACTTTCATATATCACTTGTCATGTATCATCATTTTCTTGTACTTCAG
ATGGATATGTATAAT
Found at i:23694739 original size:2 final size:2
Alignment explanation
Indices: 23694732--23694771 Score: 62
Period size: 2 Copynumber: 19.5 Consensus size: 2
23694722 TCAATGTCAC
*
23694732 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT A
23694772 CATTTCACAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 33 0.94
3 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23700229 original size:42 final size:43
Alignment explanation
Indices: 23700182--23700301 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 43
23700172 ATCAAATATA
* *
23700182 GATGCCACTGTCCTAGACAGGGTCTTACACGAAATTA-AACAC
1 GATGCCACTGTCCCAGACAGGGTCTTACACGAAATCATAACAC
* * * **
23700224 GATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAAGTC
1 GATGCCACTGTCCCAGACAGGGTCTTACACG-AAATCATAACAC
23700268 GATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAA
1 GATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAA
23700302 ACACATATCG
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
42 27 0.42
43 8 0.12
44 28 0.44
45 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.22
Consensus pattern (43 bp):
GATGCCACTGTCCCAGACAGGGTCTTACACGAAATCATAACAC
Found at i:23700281 original size:44 final size:43
Alignment explanation
Indices: 23700140--23700298 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
23700130 AGCTTGTATA
* * * *
23700140 ATGCCAACGTCCCAGACGTGGTCATACATGT-AATCAAATATAG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATCG
* * *
23700183 ATGCC-ACTGTCCTAGACAGGGTCTTACACG-AAATTAAACA-CG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAA-ATCG
* * *
23700225 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCATAAGTCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AAATCG
*
23700269 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
23700299 AAAACACATA
Statistics
Matches: 93, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 27 0.29
43 35 0.38
44 31 0.33
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAAATCG
Found at i:23703390 original size:25 final size:25
Alignment explanation
Indices: 23703357--23703413 Score: 93
Period size: 25 Copynumber: 2.4 Consensus size: 25
23703347 GGGGGGATTT
23703357 TTAT-TTTATTTAATATTAATATAA
1 TTATATTTATTTAATATTAATATAA
23703381 TTATATTTATTTAATATTAATATAA
1 TTATATTTATTTAATATTAATATAA
23703406 --ATATTTAT
1 TTATATTTAT
23703414 ATAAAATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
23 8 0.25
24 4 0.12
25 20 0.62
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
TTATATTTATTTAATATTAATATAA
Found at i:23703422 original size:13 final size:12
Alignment explanation
Indices: 23703368--23703418 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
23703358 TATTTTATTT
23703368 AATATTAATATA
1 AATATTAATATA
* *
23703380 ATTATATTTAT-TT
1 A--ATATTAATATA
23703393 AATATTAATATA
1 AATATTAATATA
*
23703405 AATATTTATATA
1 AATATTAATATA
23703417 AA
1 AA
23703419 ATATAAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
11 7 0.23
12 15 0.48
13 2 0.06
14 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
AATATTAATATA
Found at i:23709071 original size:118 final size:118
Alignment explanation
Indices: 23708863--23709104 Score: 423
Period size: 118 Copynumber: 2.1 Consensus size: 118
23708853 AAGGGTGGCC
* *
23708863 ATAAAAACCAAGGGGTTAAATCCATGGTTCATTCTTTTTTGTTTTTGGTATCTTTTTACCATTTT
1 ATAAATACCAAGGGGTTAAATCCATGCTTCATTCTTTTTTGTTTTTGGTATCTTTTTACCATTTT
* * *
23708928 ACCTTTCCTTTGAATGTTAGCAATATG-CACAGGTCATATTTTGCACACGGGAA
66 ACATTTCCTTTGAATGTTACCAATATGCCA-AGGTCATATTTTGCACACAGGAA
23708981 ATAAATACCAAGGGGTTAAATCCATGCTTCATTCTTTTTTGTTTTTGGTATCTTTTTACCATTTT
1 ATAAATACCAAGGGGTTAAATCCATGCTTCATTCTTTTTTGTTTTTGGTATCTTTTTACCATTTT
23709046 ACATTTCCTTTGAATGTTACCAATATGCCAAGGTCATATTTTGCACACAGGAA
66 ACATTTCCTTTGAATGTTACCAATATGCCAAGGTCATATTTTGCACACAGGAA
23709099 ATAAAT
1 ATAAAT
23709105 CAAGAAGCAG
Statistics
Matches: 118, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
118 116 0.98
119 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (118 bp):
ATAAATACCAAGGGGTTAAATCCATGCTTCATTCTTTTTTGTTTTTGGTATCTTTTTACCATTTT
ACATTTCCTTTGAATGTTACCAATATGCCAAGGTCATATTTTGCACACAGGAA
Found at i:23710520 original size:41 final size:41
Alignment explanation
Indices: 23710475--23710556 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
23710465 AGCCTATTTG
*
23710475 GGAAAATAATTAT-CTTATTCTAATCAACTACTAAAAGATAA
1 GGAAAATAATT-TGCTTATTCTAATAAACTACTAAAAGATAA
*
23710516 GGAAAATAATTTGCTTATTCTAATAAACTCCTAAAAGATAA
1 GGAAAATAATTTGCTTATTCTAATAAACTACTAAAAGATAA
23710557 AGTAAAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 1 0.03
41 37 0.97
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.32
Consensus pattern (41 bp):
GGAAAATAATTTGCTTATTCTAATAAACTACTAAAAGATAA
Found at i:23713562 original size:25 final size:25
Alignment explanation
Indices: 23713534--23713581 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
23713524 TACAACCCGG
23713534 ATGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGTTACATGGCTCAC
* ** *
23713559 ATGAGTTTCTTGTTATATGGCTC
1 ATGAGCTTCCCGTTACATGGCTC
23713582 GAAAGAGAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.38
Consensus pattern (25 bp):
ATGAGCTTCCCGTTACATGGCTCAC
Found at i:23720398 original size:38 final size:38
Alignment explanation
Indices: 23720343--23720689 Score: 442
Period size: 38 Copynumber: 9.1 Consensus size: 38
23720333 TTAAGCTCGA
* *
23720343 ATATAATACCAGCACTAAGCCTGCGGGGTTTAACACGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* * * *
23720381 ATATAATACCGGTACTAAGCCTGCGAGATTTAACCCAG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* ** *
23720419 ATATAATACCAGCACGAAGCCTGCGGGATAAAACCTGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* * ** *
23720457 ATATAATACCAGCACGAAGCCTGCGAGATAAAACCTGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
*
23720495 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
*
23720533 GTATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
** * ** *
23720571 ATATAATATTAGCACGAAGCCTGCGGGATAAAACCCAG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* * * **
23720609 ATATAATACCAGCCCGAAGCCTGTGGGATAAAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
23720647 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
23720685 ATATA
1 ATATA
23720690 CATCAAATAT
Statistics
Matches: 271, Mismatches: 38, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 271 1.00
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
Found at i:23726221 original size:38 final size:38
Alignment explanation
Indices: 23726176--23726522 Score: 469
Period size: 38 Copynumber: 9.1 Consensus size: 38
23726166 TTAAGCTCGA
*
23726176 ATATAATACCAGCACTAAGCCTACGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* *
23726214 ATATAATACCAACACTAAGCCTGTGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* * ** * *
23726252 ATATAATACCAGCACGAAGCTTGCGGGATAAAATCTGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* **
23726290 ATATAATACCAGCACAAAGCCTGCGGGATAAAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
*
23726328 ATATAATACTAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
23726366 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* *** **
23726404 ATATAATACCAGCACGAAGCCTATAGGATAAAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
* * ** *
23726442 ATATAATACCAGCACGAAGCCTGTGGGATAAAACCTGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
*
23726480 ATATAGTACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
23726518 ATATA
1 ATATA
23726523 CATCAAATAT
Statistics
Matches: 274, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 274 1.00
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
Found at i:23729888 original size:26 final size:26
Alignment explanation
Indices: 23729853--23729911 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
23729843 TGATATATGA
*
23729853 CTCTTCGTGAGCTTCAC-GATTAAAGG
1 CTCTTTGTGAGCTTC-CTGATTAAAGG
* *
23729879 CTTTTTGTGAGCTTCCTGATTAATGG
1 CTCTTTGTGAGCTTCCTGATTAAAGG
23729905 CTCTTTG
1 CTCTTTG
23729912 CAGTTTCCCG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.41
Consensus pattern (26 bp):
CTCTTTGTGAGCTTCCTGATTAAAGG
Done.