Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 90 of 325
Found at i:26094419 original size:40 final size:39
Alignment explanation
Indices: 26094374--26094500 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
26094364 CGGAACATAA
26094374 CCGGATATAACCATGTGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAT-TGCACAAATGCCTTCGGGTCTTAGC
* * * *
26094414 CCGGATAGAATGTC-TCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAA--CCATTGCACAAATGCCTTCGGGTCTTAGC
* * * * *
26094454 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCA-TTGCACAAATGCCTTCGGGTCTTAGC
26094494 CCGGATA
1 CCGGATA
26094501 AAATTTCCAG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
38 1 0.01
40 67 0.96
41 1 0.01
42 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CCGGATATAACCATTGCACAAATGCCTTCGGGTCTTAGC
Found at i:26094518 original size:40 final size:40
Alignment explanation
Indices: 26094390--26094540 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
26094380 ATAACCATGT
* * *
26094390 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTC-
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTC-CA
** ** * *
26094430 GCACGAA-TGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
26094470 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTCCA
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
* *
26094510 GCATAATTGTCTTCGGGAT-TTAGCCCGGATA
1 GCACAATTGCCTTCGGG-TCTTAGCCCGGATA
26094541 TCATTCGATT
Statistics
Matches: 89, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.02
40 84 0.94
41 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATAAAATCTCCA
Found at i:26094524 original size:80 final size:80
Alignment explanation
Indices: 26094390--26094539 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
26094380 ATAACCATGT
* *
26094390 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGG-TCTTAGC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGAT-TTAGC
26094454 CCGGATGTAGCCACTA
65 CCGGATGTAGCCACTA
* * * *
26094470 GCACAATTGCCTTCGGGTCTTAACCCGGATAAAATTTC-CAGCA-TAATTGTCTTCGGGATTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTC-GCACGAA-TGCCTTCGGGATTTAG
26094533 CCCGGAT
64 CCCGGAT
26094540 ATCATTCGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.93
81 1 0.02
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAAAATGTCTCGCACGAATGCCTTCGGGATTTAGCC
CGGATGTAGCCACTA
Found at i:26099653 original size:40 final size:39
Alignment explanation
Indices: 26099462--26099646 Score: 239
Period size: 40 Copynumber: 4.6 Consensus size: 39
26099452 TCGAATGATG
* * *
26099462 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
*
26099502 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
26099542 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
26099582 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26099622 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
26099647 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
39 35 0.26
40 90 0.68
41 8 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26099653 original size:79 final size:79
Alignment explanation
Indices: 26099462--26099679 Score: 257
Period size: 79 Copynumber: 2.7 Consensus size: 79
26099452 TCGAATGATG
* * **
26099462 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
26099526 TGTGCGAGTTACTAAA
64 TGTGCGAGTTACTAAA
* *
26099542 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTT
26099606 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* ** *
26099622 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAACTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
26099680 TACGTGATTC
Statistics
Matches: 120, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
78 7 0.06
79 68 0.57
80 37 0.31
81 8 0.07
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:26107652 original size:40 final size:40
Alignment explanation
Indices: 26107513--26107645 Score: 173
Period size: 40 Copynumber: 3.3 Consensus size: 40
26107503 GGGCTAAGTC
* * *
26107513 CCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGAT
26107553 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGACTAAGAT
* *
26107593 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-T
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
26107632 CCCGAAGGCATTTG
1 -CCGAAGGCATTTG
26107646 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
39 2 0.02
40 73 0.87
41 9 0.11
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
Found at i:26107664 original size:80 final size:80
Alignment explanation
Indices: 26107500--26107652 Score: 186
Period size: 80 Copynumber: 1.9 Consensus size: 80
26107490 TCGAATGATG
* *
26107500 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
**
26107565 GTGCGAGTTACTAAA
66 GAACGAGTTACTAAA
* * * *
26107580 TCCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGC-TTTGTGCTAAGTGACTATAACCGGACTAAGAT-CCGAAGGCA
26107642 TTTGAACGAGT
63 TTTGAACGAGT
26107653 AGCTATATCC
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
79 1 0.02
80 53 0.85
81 8 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTTACTAAA
Found at i:26111281 original size:26 final size:26
Alignment explanation
Indices: 26111231--26111315 Score: 102
Period size: 26 Copynumber: 3.2 Consensus size: 26
26111221 GTGCATAGTA
*
26111231 CTGCTAAATAAAACACCAGC-ACAAAGC
1 CTGCTAAAT-ATACACC-GCTACAAAGC
26111258 CTGCTAAATATACACCGACT-CAAAGC
1 CTGCTAAATATACACCG-CTACAAAGC
* *
26111284 CTACTAAATATACACCGGTACAAAGC
1 CTGCTAAATATACACCGCTACAAAGC
26111310 CTGCTA
1 CTGCTA
26111316 TACCCTAATG
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
25 2 0.04
26 40 0.78
27 9 0.18
ACGTcount: A:0.41, C:0.29, G:0.12, T:0.18
Consensus pattern (26 bp):
CTGCTAAATATACACCGCTACAAAGC
Found at i:26117844 original size:23 final size:23
Alignment explanation
Indices: 26117818--26117865 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
26117808 AGATGTGTTG
26117818 TATATCATCCAAAAAAATGATTC
1 TATATCATCCAAAAAAATGATTC
26117841 TATATCATCCAAAAAAATGATTC
1 TATATCATCCAAAAAAATGATTC
26117864 TA
1 TA
26117866 ACTATTTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.31
Consensus pattern (23 bp):
TATATCATCCAAAAAAATGATTC
Found at i:26120671 original size:30 final size:29
Alignment explanation
Indices: 26120619--26120687 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 29
26120609 TAGCAATTAA
*
26120619 TTATT-TTTTTAAAAATTTAAAATTATTT
1 TTATTATTTTTAAAAATTTAAAATAATTT
**
26120647 TTATTATTTTTAAATTTTTGAAAATAATTT
1 TTATTATTTTTAAAAATTT-AAAATAATTT
*
26120677 TTATAATTTTT
1 TTATTATTTTT
26120688 TTATTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 5 0.14
29 11 0.31
30 19 0.54
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.62
Consensus pattern (29 bp):
TTATTATTTTTAAAAATTTAAAATAATTT
Found at i:26122900 original size:37 final size:37
Alignment explanation
Indices: 26122859--26122930 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
26122849 ACCTAAAACC
* * *
26122859 CTAAACTCTAAACTATAAG-AACTTCTCTGTCTACAAA
1 CTAAACTCCAAACCATAAGAAAC-TCTCTATCTACAAA
*
26122896 CTAAATTCCAAACCATAAGAAACTCTCTATCTACA
1 CTAAACTCCAAACCATAAGAAACTCTCTATCTACA
26122931 TTTAACACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 27 0.90
38 3 0.10
ACGTcount: A:0.42, C:0.26, G:0.04, T:0.28
Consensus pattern (37 bp):
CTAAACTCCAAACCATAAGAAACTCTCTATCTACAAA
Found at i:26129952 original size:5 final size:5
Alignment explanation
Indices: 26129944--26129972 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
26129934 AGAATAAACA
26129944 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAA
26129973 ACGGATTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATAAT
Found at i:26130926 original size:19 final size:18
Alignment explanation
Indices: 26130899--26130937 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26130889 AATTAAATTT
*
26130899 TAAAAATCAAAATTTAAAC
1 TAAAAATC-AAATTCAAAC
*
26130918 TAAAGATCAAATTCAAAC
1 TAAAAATCAAATTCAAAC
26130936 TA
1 TA
26130938 TTTATAGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.26
Consensus pattern (18 bp):
TAAAAATCAAATTCAAAC
Found at i:26132438 original size:14 final size:16
Alignment explanation
Indices: 26132398--26132441 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
26132388 TTTTCAATAT
*
26132398 AAATTAAACTGAATTCA
1 AAATTAAA-TAAATTCA
26132415 AAATTAAATAAATT-A
1 AAATTAAATAAATTCA
26132430 AAA-TAAATAAAT
1 AAATTAAATAAAT
26132442 ATAGGTTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 5 0.19
17 8 0.31
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (16 bp):
AAATTAAATAAATTCA
Found at i:26137000 original size:21 final size:22
Alignment explanation
Indices: 26136962--26137003 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
26136952 TAAAAGTATT
*
26136962 TAATTTCTATATTTTTTAAAAGA
1 TAATTTC-ATATTCTTTAAAAGA
26136985 TAATTTC-TATTCTTTAAAA
1 TAATTTCATATTCTTTAAAA
26137004 TTATTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
23 7 0.39
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.52
Consensus pattern (22 bp):
TAATTTCATATTCTTTAAAAGA
Found at i:26138245 original size:18 final size:19
Alignment explanation
Indices: 26138222--26138258 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
26138212 TGAAATAATC
26138222 TTTACTTT-TTCTTTTTTT
1 TTTACTTTCTTCTTTTTTT
26138240 TTTACTTTCTTCTTTTTTT
1 TTTACTTTCTTCTTTTTTT
26138259 CCCTAACTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTACTTTCTTCTTTTTTT
Found at i:26144313 original size:12 final size:13
Alignment explanation
Indices: 26144291--26144320 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
26144281 TTTGTGTGTG
26144291 TTTTTATTTTTAT
1 TTTTTATTTTTAT
26144304 TTTTTA-TTTTAT
1 TTTTTATTTTTAT
26144316 TTTTT
1 TTTTT
26144321 CTCACATGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:26146070 original size:48 final size:48
Alignment explanation
Indices: 26145959--26146185 Score: 204
Period size: 48 Copynumber: 4.7 Consensus size: 48
26145949 GGGTAAATTG
* ** * **
26145959 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACACGTCGAGG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAATA
* * * * * * * *
26146007 CCAATGCTATATCCCAAACAAGGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAATA
* * * * *
26146055 CTGATGTCATGTCCCAGACATTGTCTTACACTAGCACACATATCAATA
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAATA
* ***
26146103 CCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAATGTGT-
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACAT-ATCAATA
* * *
26146151 CTGATGCCATGTCCCACACATGGTCTTACATTAGC
1 CCGATGCCATGTCCCAAACATGGTCTTACACTAGC
26146186 ATAAATGTCA
Statistics
Matches: 141, Mismatches: 37, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
48 138 0.98
49 3 0.02
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (48 bp):
CCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACATATCAATA
Found at i:26149134 original size:43 final size:44
Alignment explanation
Indices: 26149085--26149286 Score: 286
Period size: 43 Copynumber: 4.7 Consensus size: 44
26149075 GATTACCGAG
*
26149085 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
26149129 -TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
*
26149172 -TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-T
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *** *
26149214 ATATGATTTTGTGTAAGACCATGTCTAGGACATTGGCATCG-AT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* *
26149257 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
26149287 TATGACATTG
Statistics
Matches: 143, Mismatches: 13, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 142 0.99
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (44 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:26151182 original size:40 final size:41
Alignment explanation
Indices: 26151013--26151182 Score: 141
Period size: 41 Copynumber: 4.2 Consensus size: 41
26151003 TGAAAATGTA
* * *
26151013 GCAAAAGGTAAAGCATTAGTGGCATTTTT-GCATAAATGAC
1 GCAAAAGGTAAAGCAATAGCGGCATTTTTCTCATAAATGAC
* * *
26151053 GCAAAAGGTAAAGCAATAGCGGCGTTTTTCTTATAAGT-AC
1 GCAAAAGGTAAAGCAATAGCGGCATTTTTCTCATAAATGAC
* * ** * * **
26151093 -CTAAAAAAGTAAACCAATAGCTACGTTTTTCTCATAAACGTT
1 GC--AAAAGGTAAAGCAATAGCGGCATTTTTCTCATAAATGAC
* *
26151135 GCAAAAGGTAAAGTAATAGAGGCATTTTT-TCATAAATGAC
1 GCAAAAGGTAAAGCAATAGCGGCATTTTTCTCATAAATGAC
*
26151175 GCTAAAGG
1 GCAAAAGG
26151183 CATTTCTATG
Statistics
Matches: 99, Mismatches: 26, Indels: 10
0.73 0.19 0.07
Matches are distributed among these distances:
39 1 0.01
40 43 0.43
41 54 0.55
43 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (41 bp):
GCAAAAGGTAAAGCAATAGCGGCATTTTTCTCATAAATGAC
Found at i:26151273 original size:36 final size:36
Alignment explanation
Indices: 26151233--26151333 Score: 130
Period size: 36 Copynumber: 2.7 Consensus size: 36
26151223 TCTCAATTTG
*
26151233 TTTAAAATTTTTTATGGTTATATTTTTGCTTTATAT
1 TTTAAAATTTTTTATGGTTATATTTTAGCTTTATAT
* *
26151269 TTTAAATTTTTTTATGGTTATATTTTAGCTTTATGT
1 TTTAAAATTTTTTATGGTTATATTTTAGCTTTATAT
*
26151305 TTCCCTAATTATTTTTTATGGTTATATTT
1 TT---TAA-AATTTTTTATGGTTATATTT
26151334 GTTAAAATGT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
36 35 0.62
39 3 0.05
40 18 0.32
ACGTcount: A:0.23, C:0.05, G:0.09, T:0.63
Consensus pattern (36 bp):
TTTAAAATTTTTTATGGTTATATTTTAGCTTTATAT
Found at i:26160549 original size:19 final size:20
Alignment explanation
Indices: 26160527--26160564 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26160517 CAGATTTTAG
26160527 AATTTT-ATTTTTAATTATC
1 AATTTTAATTTTTAATTATC
*
26160546 AATTTTAATTTTTATTTAT
1 AATTTTAATTTTTAATTAT
26160565 GAGTAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (20 bp):
AATTTTAATTTTTAATTATC
Found at i:26165722 original size:6 final size:6
Alignment explanation
Indices: 26165717--26165779 Score: 69
Period size: 6 Copynumber: 10.8 Consensus size: 6
26165707 ATGATGTTTA
* * *
26165717 ATTTT- ATTTT- ATCTTT- ATTTTT ATTTTT ATTTTT ATTTTC ATTTTC
1 ATTTTC ATTTTC AT-TTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC
26165763 ATTTTC ATTTTC ATTTT
1 ATTTTC ATTTTC ATTTT
26165780 ATGTTTTTAT
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
5 10 0.18
6 45 0.82
ACGTcount: A:0.17, C:0.08, G:0.00, T:0.75
Consensus pattern (6 bp):
ATTTTC
Found at i:26172843 original size:43 final size:43
Alignment explanation
Indices: 26172742--26172889 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 43
26172732 TTTTCATGAC
* * **
26172742 CTTTAGCGACGATTT-TGGGAAAAGTGCCGCTAAAGGTCATGTT
1 CTTTAGCGGCG-TTTGTGGGGAAAGCACCGCTAAAGGTCATGTT
* *
26172785 CTTTAGCGGCATTTGTGGGGAAAGCACCGTTAAAGGTCATGTT
1 CTTTAGCGGCGTTTGTGGGGAAAGCACCGCTAAAGGTCATGTT
* ** * * * * *
26172828 CTTTAGCGGTGTTTGTAAGGTAAGCGCCGCTAAAGATTATATT
1 CTTTAGCGGCGTTTGTGGGGAAAGCACCGCTAAAGGTCATGTT
*
26172871 CTATAGCGGCGTTTGTGGG
1 CTTTAGCGGCGTTTGTGGG
26172890 AAGGTTATGT
Statistics
Matches: 84, Mismatches: 20, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 3 0.04
43 81 0.96
ACGTcount: A:0.23, C:0.16, G:0.30, T:0.32
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGGAAAGCACCGCTAAAGGTCATGTT
Found at i:26172979 original size:117 final size:116
Alignment explanation
Indices: 26172774--26172993 Score: 262
Period size: 117 Copynumber: 1.9 Consensus size: 116
26172764 AGTGCCGCTA
* ** * *
26172774 AAGGTCATGTTCTTTAGCGGCATTTGTGGGGAAAGCACCGTTAAAGGTCATGTTCTTTAGCGGTG
1 AAGGTCATGTTCTTTAGCGGCATTTGTAGGGAAAGCACCGCAAAAGATCATGTTCTTTAGAGGTG
* *
26172839 TTTGTAAGGTAAGCGCCGCTAAAGATTATATTCTATAGCGGCGTTTGTGGG
66 TTTGTAAGGGAAGCGCCGCTAAAGATCATATTCTATAGCGGCGTTTGTGGG
* * ** * *
26172890 AAGGTTATGTTCTTTAGTGGGGTTTGTAGGGAAAGCACTGCCAAAAGATCATGTTTTTTAGAGGT
1 AAGGTCATGTTCTTTAGCGGCATTTGTAGGGAAAGCACCG-CAAAAGATCATGTTCTTTAGAGGT
** * *
26172955 GTTT-TTGGGAGAAGCGCCGCTAAAGGTCATGTTCTATAG
65 GTTTGTAAGG-GAAGCGCCGCTAAAGATCATATTCTATAG
26172994 TAGCGTTTTT
Statistics
Matches: 85, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
116 37 0.44
117 48 0.56
ACGTcount: A:0.24, C:0.13, G:0.30, T:0.33
Consensus pattern (116 bp):
AAGGTCATGTTCTTTAGCGGCATTTGTAGGGAAAGCACCGCAAAAGATCATGTTCTTTAGAGGTG
TTTGTAAGGGAAGCGCCGCTAAAGATCATATTCTATAGCGGCGTTTGTGGG
Found at i:26191210 original size:16 final size:16
Alignment explanation
Indices: 26191172--26191222 Score: 52
Period size: 15 Copynumber: 3.1 Consensus size: 16
26191162 AAAAGTAATT
*
26191172 TAAAAAGATAAATAAAGA
1 TAAAAAG-TAAA-AAAAA
26191190 T-AAAAGTAAAAAAAA
1 TAAAAAGTAAAAAAAA
26191205 TAAAAA-TAAAAAATAA
1 TAAAAAGTAAAAAA-AA
26191221 TA
1 TA
26191223 GTCTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
15 12 0.40
16 12 0.40
17 5 0.17
18 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.18
Consensus pattern (16 bp):
TAAAAAGTAAAAAAAA
Found at i:26192953 original size:55 final size:55
Alignment explanation
Indices: 26192864--26192997 Score: 169
Period size: 55 Copynumber: 2.4 Consensus size: 55
26192854 TGTATATATG
* * * *
26192864 CACATGCCCGTGTTCTTTTGACAGTTTCGACCACGGACGGTAGGCACGGGCGTGT
1 CACACGCCCGTGTTATTTTGACAGTTTCGACCACGGACAGCAGGCACGGGCGTGT
* * * ** *
26192919 CACACGCCCGTGTTATTTTTATAGTTTTGACCACGGGTAGCGGGCACGGGCGTGT
1 CACACGCCCGTGTTATTTTGACAGTTTCGACCACGGACAGCAGGCACGGGCGTGT
*
26192974 CGCACGCCCGTGTTATTTTGACAG
1 CACACGCCCGTGTTATTTTGACAG
26192998 GATTGCCCAC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.16, C:0.26, G:0.30, T:0.28
Consensus pattern (55 bp):
CACACGCCCGTGTTATTTTGACAGTTTCGACCACGGACAGCAGGCACGGGCGTGT
Found at i:26193008 original size:55 final size:55
Alignment explanation
Indices: 26192906--26193009 Score: 154
Period size: 55 Copynumber: 1.9 Consensus size: 55
26192896 ACGGACGGTA
* * **
26192906 GGCACGGGCGTGTCACACGCCCGTGTTATTTTTATAGTTTTGACCACGGGTAGCG
1 GGCACGGGCGTGTCACACGCCCGTGTTATTTTGACAGGATTGACCACGGGTAGCG
* *
26192961 GGCACGGGCGTGTCGCACGCCCGTGTTATTTTGACAGGATTGCCCACGG
1 GGCACGGGCGTGTCACACGCCCGTGTTATTTTGACAGGATTGACCACGG
26193010 CCATGTCACA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 43 1.00
ACGTcount: A:0.15, C:0.26, G:0.33, T:0.26
Consensus pattern (55 bp):
GGCACGGGCGTGTCACACGCCCGTGTTATTTTGACAGGATTGACCACGGGTAGCG
Found at i:26195043 original size:24 final size:23
Alignment explanation
Indices: 26195011--26195119 Score: 128
Period size: 24 Copynumber: 4.6 Consensus size: 23
26195001 ACCAAACGTT
* **
26195011 GCACACATAGTGCTTATTATGTTC
1 GCACACATAGTGCTTAGTA-AATC
*
26195035 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
26195059 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCT-TAGTAAATC
*
26195083 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTG-CTTAGTAAATC
*
26195107 ACACACATAGTGC
1 GCACACATAGTGC
26195120 ATTTGAGATT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.03
24 67 0.89
25 6 0.08
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (23 bp):
GCACACATAGTGCTTAGTAAATC
Found at i:26195085 original size:48 final size:48
Alignment explanation
Indices: 26195011--26195119 Score: 166
Period size: 48 Copynumber: 2.3 Consensus size: 48
26195001 ACCAAACGTT
* **
26195011 GCACACATAGTGCTTATTATGTTCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
26195059 GCACACATAGTGCTATAGTA-AATCGCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCT-TAGTATAATCGCACACATAGTGCCATAGTAAATC
*
26195107 ACACACATAGTGC
1 GCACACATAGTGC
26195120 ATTTGAGATT
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
48 52 0.93
49 4 0.07
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (48 bp):
GCACACATAGTGCTTAGTATAATCGCACACATAGTGCCATAGTAAATC
Found at i:26202781 original size:24 final size:24
Alignment explanation
Indices: 26202754--26202838 Score: 152
Period size: 24 Copynumber: 3.5 Consensus size: 24
26202744 TATTATGTTA
26202754 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
*
26202778 GCACACATAGTGCTATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
26202802 GCACACATAGTGCCATAGTAAATC
1 GCACACATAGTGCCATAGTAAATC
*
26202826 ACACACATAGTGC
1 GCACACATAGTGC
26202839 ATTTGAGATT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 58 1.00
ACGTcount: A:0.38, C:0.25, G:0.16, T:0.21
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAATC
Found at i:26206382 original size:34 final size:34
Alignment explanation
Indices: 26206336--26206405 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
26206326 ATACTCGATT
26206336 CAGCTCCAGTTAAAGTAGGTTTAGCATAATCATA
1 CAGCTCCAGTTAAAGTAGGTTTAGCATAATCATA
*
26206370 CAGCTCCTGTTAAAGTAGGTTTAGCATAATCATA
1 CAGCTCCAGTTAAAGTAGGTTTAGCATAATCATA
26206404 CA
1 CA
26206406 TAGTACGAGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (34 bp):
CAGCTCCAGTTAAAGTAGGTTTAGCATAATCATA
Found at i:26210075 original size:26 final size:25
Alignment explanation
Indices: 26210001--26210075 Score: 105
Period size: 26 Copynumber: 2.9 Consensus size: 25
26209991 TTGAGTTTCG
* *
26210001 TTGGGCTTGTTTGGGTTTTGGGGAA
1 TTGGGTTTGTTTGGGTTTTGGGTAA
26210026 TTGGGTTTGTTTTGGGTTTTGGGTAA
1 TTGGGTTTG-TTTGGGTTTTGGGTAA
*
26210052 TTGGGGTTTGTTTGGGTGTTGGGT
1 TT-GGGTTTGTTTGGGTTTTGGGT
26210076 TGGTATTAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
25 8 0.18
26 30 0.67
27 7 0.16
ACGTcount: A:0.05, C:0.01, G:0.44, T:0.49
Consensus pattern (25 bp):
TTGGGTTTGTTTGGGTTTTGGGTAA
Found at i:26213366 original size:48 final size:48
Alignment explanation
Indices: 26213314--26213407 Score: 170
Period size: 48 Copynumber: 2.0 Consensus size: 48
26213304 AAATAAATGG
26213314 TAAAAGCTTAGTTTGTGAATGAGACAATTCAAAAGTTTTACCTGAATT
1 TAAAAGCTTAGTTTGTGAATGAGACAATTCAAAAGTTTTACCTGAATT
* *
26213362 TAAAAGCTTAGTTTGTGAATGAGACAATTCAAAATTTTTATCTGAA
1 TAAAAGCTTAGTTTGTGAATGAGACAATTCAAAAGTTTTACCTGAA
26213408 CATTTTTGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (48 bp):
TAAAAGCTTAGTTTGTGAATGAGACAATTCAAAAGTTTTACCTGAATT
Found at i:26216808 original size:24 final size:24
Alignment explanation
Indices: 26216776--26216823 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
26216766 GATAACTTAA
26216776 CCTATGAACCCGTTTCGTGGGTTC
1 CCTATGAACCCGTTTCGTGGGTTC
*
26216800 CCTATGAACCCGTTTTGTGGGTTC
1 CCTATGAACCCGTTTCGTGGGTTC
26216824 TATAGCTGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.12, C:0.27, G:0.25, T:0.35
Consensus pattern (24 bp):
CCTATGAACCCGTTTCGTGGGTTC
Found at i:26217805 original size:16 final size:17
Alignment explanation
Indices: 26217774--26217806 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26217764 TTCATAAGTA
26217774 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
26217791 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
26217807 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:26218149 original size:46 final size:46
Alignment explanation
Indices: 26218092--26218265 Score: 208
Period size: 46 Copynumber: 3.8 Consensus size: 46
26218082 TTTGACATGA
* * * *
26218092 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
*** * *
26218138 TGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATGTTACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTC-TGTCACGT
* * *
26218184 TGCCACGGTATCTTTCAACCATGGTCTTACACATTTTATATC-CTGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCAC-GT
26218230 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
26218266 CATTTCAGAA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
45 5 0.05
46 101 0.93
47 3 0.03
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCTGTCACGT
Found at i:26218265 original size:92 final size:92
Alignment explanation
Indices: 26218099--26218268 Score: 259
Period size: 92 Copynumber: 1.8 Consensus size: 92
26218089 TGATGCCATA
* * * *
26218099 GTATCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
***
26218164 TTGTTCATTTCATGTTACATTGCCACG
66 TTACACATTTCATGTTACATTGCCACG
**
26218191 GTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTC
1 GTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
26218256 TTACACATTTCAT
66 TTACACATTTCAT
26218269 TTCAGAAAGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
92 69 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (92 bp):
GTATCTTTCAACCATGGTCTTACACATTTTATATCAGGTTGCCATGGTATCTTTCAACCATGGTC
TTACACATTTCATGTTACATTGCCACG
Found at i:26220423 original size:8 final size:8
Alignment explanation
Indices: 26220410--26220434 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26220400 ATATATACTA
26220410 AATAAAAT
1 AATAAAAT
26220418 AATAAAAT
1 AATAAAAT
26220426 AATAAAAT
1 AATAAAAT
26220434 A
1 A
26220435 TCATTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:26220731 original size:30 final size:29
Alignment explanation
Indices: 26220697--26220764 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
26220687 CATCCTTAAA
* *
26220697 ATATTTTCACTATTAGTCCTTCAAATTTTC
1 ATATTTTCA-TATTAATCCCTCAAATTTTC
* * *
26220727 ATATTTACATTTTAATCCCTCAAATTTTG
1 ATATTTTCATATTAATCCCTCAAATTTTC
26220756 AGTATTTTC
1 A-TATTTTC
26220765 TCTTGGGCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.28, C:0.18, G:0.04, T:0.50
Consensus pattern (29 bp):
ATATTTTCATATTAATCCCTCAAATTTTC
Found at i:26222377 original size:68 final size:70
Alignment explanation
Indices: 26222305--26222502 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
26222295 ACACCCTGTA
* * * *
26222305 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
26222367 ATAAAT
65 ATAAAT
*
26222373 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
26222438 ATAAAT
65 ATAAAT
*
26222444 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
26222503 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:26222416 original size:41 final size:41
Alignment explanation
Indices: 26222371--26222488 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
26222361 TGAAAGATAA
26222371 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
26222412 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26222442 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26222483 ATGTAG
1 ATGTAG
26222489 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:26222428 original size:71 final size:71
Alignment explanation
Indices: 26222339--26222502 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26222329 GAGATGTATC
26222339 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26222404 AGGACA
66 AGGACA
26222410 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26222475 AGGACA
66 AGGACA
26222481 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
26222503 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:26229947 original size:68 final size:70
Alignment explanation
Indices: 26229875--26230072 Score: 294
Period size: 71 Copynumber: 2.8 Consensus size: 70
26229865 ACACCCTGTA
* * * *
26229875 GTAGCTAGGTCACATGCGTGATA-CGAGATGTA-TC-CCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAG-TGAAGACACCATGTAGACAAGAGAGCTACGTGAAAG
26229937 ATAAAT
65 ATAAAT
*
26229943 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGTGAAAG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACGTGAAAG
26230008 ATAAAT
65 ATAAAT
*
26230014 GTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACG
1 GTAGCTAGGTCGCATGCGTGATACCAAGTGAA-GACACCATGTAGACAAGAGAGCTACG
26230073 AGACAAATCG
Statistics
Matches: 121, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
68 24 0.20
69 3 0.02
70 1 0.01
71 93 0.77
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.20
Consensus pattern (70 bp):
GTAGCTAGGTCGCATGCGTGATACCAAGTGAAGACACCATGTAGACAAGAGAGCTACGTGAAAGA
TAAAT
Found at i:26229986 original size:41 final size:41
Alignment explanation
Indices: 26229941--26230058 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
26229931 TGAAAGATAA
26229941 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
26229982 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26230012 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
26230053 ATGTAG
1 ATGTAG
26230059 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:26229998 original size:71 final size:71
Alignment explanation
Indices: 26229909--26230072 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26229899 GAGATGTATC
26229909 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26229974 AGGACA
66 AGGACA
26229980 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
26230045 AGGACA
66 AGGACA
26230051 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
26230073 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:26239982 original size:28 final size:29
Alignment explanation
Indices: 26239911--26239990 Score: 99
Period size: 28 Copynumber: 2.8 Consensus size: 29
26239901 ATCCACCATC
* *
26239911 GGTACATAGTACATGGAACTGTAAACACC
1 GGTACATAGTACCTGGAACTGTAAACACA
* * *
26239940 GGCACAGAGTGCCTGGAACTG-AAACACA
1 GGTACATAGTACCTGGAACTGTAAACACA
*
26239968 GGTACATAGCACCTGGAACTGTA
1 GGTACATAGTACCTGGAACTGTA
26239991 GTCATCGATG
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (29 bp):
GGTACATAGTACCTGGAACTGTAAACACA
Found at i:26253485 original size:18 final size:18
Alignment explanation
Indices: 26253462--26253497 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
26253452 CCATTTATAC
26253462 CCATATTTTGAGTTAGGG
1 CCATATTTTGAGTTAGGG
26253480 CCATATTTTGAGTTAGGG
1 CCATATTTTGAGTTAGGG
26253498 TTTATGTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.11, G:0.28, T:0.39
Consensus pattern (18 bp):
CCATATTTTGAGTTAGGG
Found at i:26260232 original size:38 final size:38
Alignment explanation
Indices: 26260180--26260304 Score: 133
Period size: 38 Copynumber: 3.0 Consensus size: 38
26260170 ATTGATTCAT
*
26260180 TAACGTGGTTCTAAGTGGATATACCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
*
26260218 TAACGTGGTGCTAAGTGGATATACCACGATTACACATATTGATACATG
1 TAACGTGGTGCTAAGTGGATATACCACG---------GTT-ATACATG
*
26260266 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
26260304 T
1 T
26260305 TAATTTGAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 20
0.75 0.04 0.21
Matches are distributed among these distances:
38 35 0.48
39 2 0.03
47 2 0.03
48 34 0.47
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
Found at i:26260282 original size:48 final size:48
Alignment explanation
Indices: 26260211--26260302 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
26260201 TACCACGGTT
26260211 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
26260259 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTATACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
26260303 GTTAATTTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:26268360 original size:59 final size:59
Alignment explanation
Indices: 26268281--26268398 Score: 209
Period size: 59 Copynumber: 2.0 Consensus size: 59
26268271 ACAGGCACAC
26268281 GGTGTAAGATGAGACCGTGGCTAAAAAGTCATATAAGACTAAGTTGATGGGTGTTTCAT
1 GGTGTAAGATGAGACCGTGGCTAAAAAGTCATATAAGACTAAGTTGATGGGTGTTTCAT
* * *
26268340 GGTGTAAGATGAGACTGTGGCTAAAGAGTCATATAAGGCTAAGTTGATGGGTGTTTCAT
1 GGTGTAAGATGAGACCGTGGCTAAAAAGTCATATAAGACTAAGTTGATGGGTGTTTCAT
26268399 CGAAACCAGA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.30
Consensus pattern (59 bp):
GGTGTAAGATGAGACCGTGGCTAAAAAGTCATATAAGACTAAGTTGATGGGTGTTTCAT
Found at i:26277018 original size:27 final size:28
Alignment explanation
Indices: 26276980--26277079 Score: 121
Period size: 27 Copynumber: 3.5 Consensus size: 28
26276970 ATAGTGAGTC
26276980 CGCACACTTAGTGCTATAAAATC-AACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* *
26277007 CGCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATCAAACT
* * *
26277035 CGCACACTTAGTGCTGTACAAATTTAAAACC
1 CGCACACTTAGTGCTATA-AAA--TCAAACT
26277066 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26277080 AATCTCATGA
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 21 0.34
28 20 0.32
29 2 0.03
31 19 0.31
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTATAAAATCAAACT
Found at i:26277939 original size:7 final size:7
Alignment explanation
Indices: 26277929--26277953 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26277919 TCATCACCAC
26277929 AACATCA
1 AACATCA
26277936 AACATCA
1 AACATCA
26277943 AACATCA
1 AACATCA
26277950 AACA
1 AACA
26277954 AGAAGACAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (7 bp):
AACATCA
Found at i:26282413 original size:40 final size:40
Alignment explanation
Indices: 26282358--26282519 Score: 184
Period size: 40 Copynumber: 4.0 Consensus size: 40
26282348 TGAATGATAC
* * *
26282358 CCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
*
26282398 CCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-TTATAT
1 CCGGGCTAAGACCCGAAGGCAATT-GTGCTAG-TGATTATAT
* * * * *
26282438 CCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTACTAAAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
* * *
26282478 CCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATAT
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
26282518 CC
1 CC
26282520 AGTTAAATTC
Statistics
Matches: 103, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.03
40 95 0.92
41 5 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTATAT
Found at i:26286674 original size:42 final size:42
Alignment explanation
Indices: 26286529--26286674 Score: 136
Period size: 42 Copynumber: 3.5 Consensus size: 42
26286519 TATTATACCA
* * * *
26286529 ATGCCATATCCTAGAAATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCTAGATATGGTATTACATGAAG-TCTCATATCG
* * * * *
26286571 ATGCCAATAGCCTAGCTATGGTTTTACACGAAATCTCATATCG
1 ATGCC-ATATCCTAGATATGGTATTACATGAAGTCTCATATCG
*
26286614 ATGCCATATTCC-AAATATGGTATTACATGAAGTCTCATAAT-G
1 ATGCCATA-TCCTAGATATGGTATTACATGAAGTCTCAT-ATCG
*
26286656 ATGCCATATCCGAGATATG
1 ATGCCATATCCTAGATATG
26286675 ATCTTACACA
Statistics
Matches: 84, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 3 0.04
42 44 0.52
43 37 0.44
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTATTACATGAAGTCTCATATCG
Found at i:26289722 original size:25 final size:25
Alignment explanation
Indices: 26289694--26289788 Score: 79
Period size: 25 Copynumber: 3.8 Consensus size: 25
26289684 TCCTATACAT
*
26289694 GTATGCTCATACGAGCTATGAATAG
1 GTATGCTCATACGAGCTATGAATCG
* *
26289719 GTATGCTCACT-CAAGCTGT-AGATCG
1 GTATGCTCA-TACGAGCTATGA-ATCG
* *
26289744 GTATGCTC-TCACGAGCTGTAAATCG
1 GTATGCTCAT-ACGAGCTATGAATCG
* *
26289769 GAATGCTCACACGAGCTATG
1 GTATGCTCATACGAGCTATG
26289789 GGTTAGAACG
Statistics
Matches: 56, Mismatches: 8, Indels: 12
0.74 0.11 0.16
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 52 0.93
26 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATGAATCG
Found at i:26289868 original size:41 final size:41
Alignment explanation
Indices: 26289772--26289871 Score: 137
Period size: 41 Copynumber: 2.4 Consensus size: 41
26289762 TAAATCGGAA
* * * * *
26289772 TGCTCACACGAGCTATGGGTTAGAACGTAGATGCAAGATGC
1 TGCTCACACGAGCTGTGGGTCAGAACATAGATACAAGATAC
**
26289813 TGCTCACACGAGCTGTGGGTCAGAACATAGATACACTATAC
1 TGCTCACACGAGCTGTGGGTCAGAACATAGATACAAGATAC
26289854 TGCTCACACGAGCTGTGG
1 TGCTCACACGAGCTGTGG
26289872 AATATCTGAA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (41 bp):
TGCTCACACGAGCTGTGGGTCAGAACATAGATACAAGATAC
Found at i:26294608 original size:42 final size:42
Alignment explanation
Indices: 26294561--26294702 Score: 160
Period size: 42 Copynumber: 3.4 Consensus size: 42
26294551 ACTGAGGTTA
* *
26294561 CGTGTAAGACTATATCTGGGATATGGCATCAGTATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTT
* *
26294603 CGTGTAAGACCATATTTGGGATATGGCATCAATATGAGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTT
* * * * * *
26294645 CATGTAAGACCATAACTGGGCTATTGGCATCGATACGATA-TT
1 CGTGTAAGACCATATCTGGGATA-TGGCATCAATATGAGACTT
*
26294687 ACATGTAAGACCATAT
1 -CGTGTAAGACCATAT
26294703 ATATTTGGGA
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 59 0.69
43 27 0.31
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTT
Found at i:26304464 original size:6 final size:6
Alignment explanation
Indices: 26304444--26304486 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
26304434 ATTAAGTCCG
* *
26304444 TTTA-T TTTA-T TTTATT TTTATT TTTATG TTTATT GTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
26304487 TTAAACTTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:26304477 original size:18 final size:17
Alignment explanation
Indices: 26304444--26304486 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
26304434 ATTAAGTCCG
26304444 TTTA-TTTTATTTTATT
1 TTTATTTTTATTTTATT
26304460 TTTATTTTTATGTTTATT
1 TTTATTTTTAT-TTTATT
*
26304478 GTTATTTTT
1 TTTATTTTT
26304487 TTAAACTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 4 0.17
17 6 0.25
18 14 0.58
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTATTTTTATTTTATT
Found at i:26310797 original size:8 final size:8
Alignment explanation
Indices: 26310768--26310800 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
26310758 TCACATAATG
26310768 TCGGCTTT
1 TCGGCTTT
26310776 TCGGCATTT
1 TCGGC-TTT
26310785 T-GGCTTT
1 TCGGCTTT
26310792 TCGGCTTT
1 TCGGCTTT
26310800 T
1 T
26310801 GCCGATCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.17
8 15 0.65
9 4 0.17
ACGTcount: A:0.03, C:0.21, G:0.24, T:0.52
Consensus pattern (8 bp):
TCGGCTTT
Found at i:26314024 original size:17 final size:19
Alignment explanation
Indices: 26314002--26314044 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
26313992 TCTAAATGGG
*
26314002 ATTAAAATAAA-TT-CTTA
1 ATTAAAATAAATTTAATTA
26314019 ATTAAAA-AAATTTAATTA
1 ATTAAAATAAATTTAATTA
26314037 ATTAAAAT
1 ATTAAAAT
26314045 TTTCAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 9 0.41
18 10 0.45
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (19 bp):
ATTAAAATAAATTTAATTA
Found at i:26314256 original size:16 final size:17
Alignment explanation
Indices: 26314235--26314267 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26314225 AGGTTTAGGT
26314235 TTAAAA-TTTTAATTAA
1 TTAAAATTTTTAATTAA
26314251 TTAAAATTTTTAATTAA
1 TTAAAATTTTTAATTAA
26314268 AAATCTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (17 bp):
TTAAAATTTTTAATTAA
Found at i:26317321 original size:34 final size:34
Alignment explanation
Indices: 26317280--26317351 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 34
26317270 TTATGTCATG
*
26317280 GATCTCTTCAAGCAAACCCCCGCCTCTACTATAT
1 GATCTCTTCAAGAAAACCCCCGCCTCTACTATAT
* *
26317314 GATCTCTTCAGGAAAACCCTCGCCTCTACTATAT
1 GATCTCTTCAAGAAAACCCCCGCCTCTACTATAT
26317348 GATC
1 GATC
26317352 ATATTAAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.35, G:0.11, T:0.28
Consensus pattern (34 bp):
GATCTCTTCAAGAAAACCCCCGCCTCTACTATAT
Found at i:26318999 original size:15 final size:15
Alignment explanation
Indices: 26318979--26319014 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
26318969 TCTTTCACAA
*
26318979 TCAAATATTTTTCTT
1 TCAAATATTTTGCTT
26318994 TCAAATATTTTGCTT
1 TCAAATATTTTGCTT
26319009 TCAAAT
1 TCAAAT
26319015 CTTTAATGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.03, T:0.53
Consensus pattern (15 bp):
TCAAATATTTTGCTT
Found at i:26325531 original size:27 final size:27
Alignment explanation
Indices: 26325399--26325524 Score: 198
Period size: 27 Copynumber: 4.7 Consensus size: 27
26325389 ACGGTCATTT
* * *
26325399 TACCCTACGAGGGTATTTTGGTAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
26325426 TACCCTACAAGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
26325453 TACCCTACAAGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
*
26325480 TACCCTACAGGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGATAATCC
* *
26325507 TACCCTATAGGGGTATTT
1 TACCCTACAAGGGTATTT
26325525 TGGTAATTTC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 94 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (27 bp):
TACCCTACAAGGGTATTTCGATAATCC
Found at i:26325547 original size:27 final size:27
Alignment explanation
Indices: 26325515--26325709 Score: 212
Period size: 27 Copynumber: 7.2 Consensus size: 27
26325505 CCTACCCTAT
** *
26325515 AGGGGTATTTTGGTAATTTCACAAATC
1 AGGGGTATTTCAGTAATTTTACAAATC
* * **
26325542 AAGGGTATTTCAATAATTTTACAACCC
1 AGGGGTATTTCAGTAATTTTACAAATC
* * *
26325569 GGGGGTATTTTAGTAATTTTACAAATT
1 AGGGGTATTTCAGTAATTTTACAAATC
*
26325596 AGGGGTAATTT-AATAATTTTACAAATC
1 AGGGGT-ATTTCAGTAATTTTACAAATC
* *
26325623 AGGGGTATTTCAGTAATGTTACAAGTC
1 AGGGGTATTTCAGTAATTTTACAAATC
* **
26325650 AGGGGTATTTCGGTAATTTTACAACCC
1 AGGGGTATTTCAGTAATTTTACAAATC
* *
26325677 GGGGGTATTTCAGTAATTTTACAAACC
1 AGGGGTATTTCAGTAATTTTACAAATC
26325704 AGGGGT
1 AGGGGT
26325710 CTTCACAACC
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
26 4 0.03
27 130 0.94
28 4 0.03
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (27 bp):
AGGGGTATTTCAGTAATTTTACAAATC
Found at i:26325548 original size:54 final size:54
Alignment explanation
Indices: 26325399--26325558 Score: 162
Period size: 54 Copynumber: 3.0 Consensus size: 54
26325389 ACGGTCATTT
* * * **
26325399 TACCCTACGAGGGTATTTTGGTAATCCTACCCTACAAGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGATAATCCTACAATACAAGGGTATTTCGATAATCC
** *
26325453 TACCCTACAAGGGTATTTCGATAATCCTACCCTACAGGGGTATTTCGATAATCC
1 TACCCTACAAGGGTATTTCGATAATCCTACAATACAAGGGTATTTCGATAATCC
* * * * * *
26325507 TACCCTATAGGGGTATTTTGGTAAT-TTCACAA-ATCAAGGGTATTTCAATAAT
1 TACCCTACAAGGGTATTTCGATAATCCT-ACAATA-CAAGGGTATTTCGATAAT
26325559 TTTACAACCC
Statistics
Matches: 91, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
53 2 0.02
54 89 0.98
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (54 bp):
TACCCTACAAGGGTATTTCGATAATCCTACAATACAAGGGTATTTCGATAATCC
Found at i:26325574 original size:54 final size:54
Alignment explanation
Indices: 26325516--26325709 Score: 246
Period size: 54 Copynumber: 3.6 Consensus size: 54
26325506 CTACCCTATA
** * *
26325516 GGGGTATTTTGGTAATTTCACAAATCAAGGGTATTTCAATAATTTTACAACCCG
1 GGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCAATAATTTTACAACCCG
* * ** *
26325570 GGGGTATTTTAGTAATTTTACAAATTAGGGGTAATTT-AATAATTTTACAAATCA
1 GGGGTATTTCAGTAATTTTACAAATCAGGGGT-ATTTCAATAATTTTACAACCCG
* * **
26325624 GGGGTATTTCAGTAATGTTACAAGTCAGGGGTATTTCGGTAATTTTACAACCCG
1 GGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCAATAATTTTACAACCCG
*
26325678 GGGGTATTTCAGTAATTTTACAAACCAGGGGT
1 GGGGTATTTCAGTAATTTTACAAATCAGGGGT
26325710 CTTCACAACC
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 4 0.03
54 111 0.93
55 4 0.03
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.36
Consensus pattern (54 bp):
GGGGTATTTCAGTAATTTTACAAATCAGGGGTATTTCAATAATTTTACAACCCG
Found at i:26325574 original size:81 final size:81
Alignment explanation
Indices: 26325487--26325666 Score: 184
Period size: 81 Copynumber: 2.2 Consensus size: 81
26325477 TCCTACCCTA
** * **
26325487 CAGGGGTATTTCGATAATCCTAC-CCTATAGGGGTATTTTGGTAATTTCACAAATCAAGGGTATT
1 CAGGGGTATTTCGATAATCCTACAAAT-TAGGGGTAATTTAATAATTTCACAAATCAAGGGTATT
*
26325551 TCAATAATTTTACAACC
65 TCAATAATGTTACAACC
* * ** * *
26325568 CGGGGGTATTT-TAGTAATTTTACAAATTAGGGGTAATTTAATAATTTTACAAATCAGGGGTATT
1 CAGGGGTATTTCGA-TAATCCTACAAATTAGGGGTAATTTAATAATTTCACAAATCAAGGGTATT
* **
26325632 TCAGTAATGTTACAAGT
65 TCAATAATGTTACAACC
*
26325649 CAGGGGTATTTCGGTAAT
1 CAGGGGTATTTCGATAAT
26325667 TTTACAACCC
Statistics
Matches: 78, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
80 1 0.01
81 76 0.97
82 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (81 bp):
CAGGGGTATTTCGATAATCCTACAAATTAGGGGTAATTTAATAATTTCACAAATCAAGGGTATTT
CAATAATGTTACAACC
Found at i:26329198 original size:15 final size:17
Alignment explanation
Indices: 26329180--26329211 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
26329170 TAGCATAATT
26329180 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
26329195 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
26329212 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:26335642 original size:39 final size:40
Alignment explanation
Indices: 26335594--26335752 Score: 171
Period size: 39 Copynumber: 4.0 Consensus size: 40
26335584 GCTACTCGTT
* * ***
26335594 CAAACGCCTTCGGGACATAGCCCGGTTATGGTAAC-CGCA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAACTCGCA
*
26335633 CAAATGCCTTCGGGACATAACCCGGATATCACAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAACTCGCA
* * * *
26335673 CAATTGCCTTCGGG-CTTAGCCCGGATATCATAGCTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAACTCGCA
* * * *
26335712 CCATTGCCTTCGGG-CTTAGCCCGGATATCACAATTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATATCACAACTCGCA
26335751 CA
1 CA
26335753 TTCATACACA
Statistics
Matches: 103, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 86 0.83
40 17 0.17
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.21
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATATCACAACTCGCA
Found at i:26343581 original size:39 final size:39
Alignment explanation
Indices: 26343509--26343632 Score: 176
Period size: 39 Copynumber: 3.2 Consensus size: 39
26343499 TTATGGTAAC
* *
26343509 CGCACAAATGCCTTCGGGACTTAACCCGGATATCACAACT
1 CGCACAATTGCCTTCGGG-CTTAGCCCGGATATCACAACT
* * *
26343549 CGCATAATTGCCTTCGGGCTTAGCCCGGATATCATAGCT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
* *
26343588 CGCACCATTGCCTTCGGGCTTAGCCCGGATATCACAATT
1 CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
26343627 CGCACA
1 CGCACA
26343633 TTCATACACA
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 57 0.78
40 16 0.22
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (39 bp):
CGCACAATTGCCTTCGGGCTTAGCCCGGATATCACAACT
Found at i:26348901 original size:46 final size:46
Alignment explanation
Indices: 26348848--26348938 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
26348838 TGACGATCCT
26348848 CAAGCTCGTAACTTGTCTCCAAAATCTATAAAACAGAGGCAAACAA
1 CAAGCTCGTAACTTGTCTCCAAAATCTATAAAACAGAGGCAAACAA
*
26348894 CAAGCTCGTAACTTGTCTCCAAAATCTATAAAATAGAGGCAAACA
1 CAAGCTCGTAACTTGTCTCCAAAATCTATAAAACAGAGGCAAACA
26348939 TACACACACA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.43, C:0.23, G:0.13, T:0.21
Consensus pattern (46 bp):
CAAGCTCGTAACTTGTCTCCAAAATCTATAAAACAGAGGCAAACAA
Found at i:26349760 original size:17 final size:17
Alignment explanation
Indices: 26349738--26349772 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26349728 ATACAAAAGC
26349738 AAAGTAACTAATATGGA
1 AAAGTAACTAATATGGA
26349755 AAAGTAACTAATATGGA
1 AAAGTAACTAATATGGA
26349772 A
1 A
26349773 CATGTACATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.17, T:0.23
Consensus pattern (17 bp):
AAAGTAACTAATATGGA
Found at i:26352502 original size:43 final size:43
Alignment explanation
Indices: 26352406--26352502 Score: 149
Period size: 43 Copynumber: 2.3 Consensus size: 43
26352396 CTAATGTCTT
* *
26352406 AGACGTGGTCTTACATGTAATCACATATCGATGCCACTGTCCC
1 AGACGTGGTCTAACATGTAATCACATATCGATGCCAATGTCCC
** *
26352449 AGACAAGGTCTAACATGTAATCACTTATCGATGCCAATGTCCC
1 AGACGTGGTCTAACATGTAATCACATATCGATGCCAATGTCCC
26352492 AGACGTGGTCT
1 AGACGTGGTCT
26352503 TATACGAGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (43 bp):
AGACGTGGTCTAACATGTAATCACATATCGATGCCAATGTCCC
Found at i:26354651 original size:12 final size:12
Alignment explanation
Indices: 26354634--26354658 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26354624 TACAACTCCA
26354634 CTCATCATTCTG
1 CTCATCATTCTG
26354646 CTCATCATTCTG
1 CTCATCATTCTG
26354658 C
1 C
26354659 CATTCGTACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.36, G:0.08, T:0.40
Consensus pattern (12 bp):
CTCATCATTCTG
Found at i:26354745 original size:47 final size:47
Alignment explanation
Indices: 26354691--26354786 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
26354681 ACAATATATG
26354691 GTTAAGCTCTCCCACATCATGTACCCTATTTGGCAGGAGACTCTCCT
1 GTTAAGCTCTCCCACATCATGTACCCTATTTGGCAGGAGACTCTCCT
26354738 GTTAAGCTCTCCCACATCATGTACCCTATTTGGCAGGAGACTCTCCT
1 GTTAAGCTCTCCCACATCATGTACCCTATTTGGCAGGAGACTCTCCT
26354785 GT
1 GT
26354787 AATTATAGTG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.30
Consensus pattern (47 bp):
GTTAAGCTCTCCCACATCATGTACCCTATTTGGCAGGAGACTCTCCT
Found at i:26357676 original size:21 final size:21
Alignment explanation
Indices: 26357635--26357677 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
26357625 ACCCCAAACT
* *
26357635 CTCAAACCTTTTTACTTTTCC
1 CTCAAAACTTTTTACTCTTCC
26357656 CTCAAAAC-TTTTACTCCTTCC
1 CTCAAAACTTTTTACT-CTTCC
26357677 C
1 C
26357678 ACTTTTCCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.21, C:0.37, G:0.00, T:0.42
Consensus pattern (21 bp):
CTCAAAACTTTTTACTCTTCC
Found at i:26360118 original size:3 final size:3
Alignment explanation
Indices: 26360110--26360140 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
26360100 AGTCATGCTT
26360110 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
26360141 GATCATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:26366495 original size:23 final size:22
Alignment explanation
Indices: 26366426--26366502 Score: 115
Period size: 21 Copynumber: 3.6 Consensus size: 22
26366416 CATAAGTGTA
26366426 TGAA-ACGACACACGAGGTGCC
1 TGAATACGACACACGAGGTGCC
26366447 TG-ATACGACACACGAGGTGCC
1 TGAATACGACACACGAGGTGCC
*
26366468 T-AATATGACACACGAGGTGCC
1 TGAATACGACACACGAGGTGCC
26366489 TGAAATACGACACA
1 TG-AATACGACACA
26366503 TAAAGTGCCT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
20 1 0.02
21 39 0.78
23 10 0.20
ACGTcount: A:0.35, C:0.26, G:0.25, T:0.14
Consensus pattern (22 bp):
TGAATACGACACACGAGGTGCC
Found at i:26366656 original size:24 final size:24
Alignment explanation
Indices: 26366608--26366662 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
26366598 TATTCAATTT
26366608 TCATA-TTTCAATTCAATCACTTTC
1 TCATATTTTCAATTCAATCAC-TTC
*
26366632 TCATATTTTCCATTCAAATCA-TTC
1 TCATATTTTCAATTC-AATCACTTC
26366656 TCA-ATTT
1 TCATATTT
26366663 AAATCACAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.14
24 11 0.39
25 8 0.29
26 5 0.18
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (24 bp):
TCATATTTTCAATTCAATCACTTC
Found at i:26369747 original size:157 final size:156
Alignment explanation
Indices: 26369453--26369753 Score: 403
Period size: 157 Copynumber: 1.9 Consensus size: 156
26369443 ATCTATGCCG
* * *
26369453 AAAATCAAAGAATGTCTACCCATAAATGTTTCGAGGAATCATAGTAGGAGTTTTGTAACAAGCTA
1 AAAATCAAAGAATGTCTACCCATAAATGTCTAGAGGAATCATAGTAGGAGTTTTGTAACAAGCCA
* ** * * * *
26369518 GTGAGCCCATTGTACAACAGTGTAGTAGGACTTTCTACTTCAGTTTTGGTTTCAACATTAGTCAC
66 GTGAACCCACCGCACAACAGTGTAGTAGGACTTTCTACTTCAGCTTTGGTTCCAACATTAGCCAC
*
26369583 AACGGTGGCTGAAGGTGGACCTATCA
131 AAAGGTGGCTGAAGGTGGACCTATCA
26369609 AAAATCAAAGAATGTCTACCCATAGACAT-TCTAG-GGACATCATAGTAGGAGTTTTGTAACAAG
1 AAAATCAAAGAATGTCTACCCATA-A-ATGTCTAGAGGA-ATCATAGTAGGAGTTTTGTAACAAG
* *
26369672 CCAGT-ATATCCACCGCGCAATC-GTGTAGTAGGACTTTCTACTTCAGCTTTGGTTCCAACATTA
63 CCAGTGA-ACCCACCGCACAA-CAGTGTAGTAGGACTTTCTACTTCAGCTTTGGTTCCAACATTA
*
26369735 GCCGCAAAGGTGGCTGAAG
126 GCCACAAAGGTGGCTGAAG
26369754 ATAGACTTGG
Statistics
Matches: 126, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
156 28 0.22
157 95 0.75
158 3 0.02
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (156 bp):
AAAATCAAAGAATGTCTACCCATAAATGTCTAGAGGAATCATAGTAGGAGTTTTGTAACAAGCCA
GTGAACCCACCGCACAACAGTGTAGTAGGACTTTCTACTTCAGCTTTGGTTCCAACATTAGCCAC
AAAGGTGGCTGAAGGTGGACCTATCA
Found at i:26373349 original size:21 final size:21
Alignment explanation
Indices: 26373324--26373389 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
26373314 ACTACATTCT
26373324 TTTTGTCATATAAATTAAATG
1 TTTTGTCATATAAATTAAATG
* * * * *
26373345 TTTTG-GATAATTAACTACATTCT
1 TTTTGTCAT-ATAAATTA-AAT-G
26373368 TTTTGTCATATAAATTAAATG
1 TTTTGTCATATAAATTAAATG
26373389 T
1 T
26373390 AAAAATTGAG
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
20 2 0.06
21 12 0.39
22 4 0.13
23 11 0.35
24 2 0.06
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (21 bp):
TTTTGTCATATAAATTAAATG
Found at i:26373350 original size:44 final size:44
Alignment explanation
Indices: 26373300--26373389 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
26373290 TTTTAGTTTA
26373300 GTTTTGGATAATTAACTACATTCTTTTTGTCATATAAATTAAAT
1 GTTTTGGATAATTAACTACATTCTTTTTGTCATATAAATTAAAT
26373344 GTTTTGGATAATTAACTACATTCTTTTTGTCATATAAATTAAAT
1 GTTTTGGATAATTAACTACATTCTTTTTGTCATATAAATTAAAT
26373388 GT
1 GT
26373390 AAAAATTGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.48
Consensus pattern (44 bp):
GTTTTGGATAATTAACTACATTCTTTTTGTCATATAAATTAAAT
Found at i:26373412 original size:18 final size:17
Alignment explanation
Indices: 26373379--26373427 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
26373369 TTTGTCATAT
26373379 AAATTAAATGTAAAAATTGA
1 AAATTAAA--TAAAAATT-A
*
26373399 GAATTAAATAAAAATTA
1 AAATTAAATAAAAATTA
26373416 AAATTAAA-AAAA
1 AAATTAAATAAAA
26373428 GTTATTTGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 4 0.15
17 8 0.30
18 8 0.30
20 7 0.26
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.27
Consensus pattern (17 bp):
AAATTAAATAAAAATTA
Found at i:26374145 original size:20 final size:20
Alignment explanation
Indices: 26374120--26374157 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26374110 AAATAGTTGA
26374120 CTTGAC-GATTGAATCAATTG
1 CTTGACTGA-TGAATCAATTG
26374140 CTTGACTGATGAATCAAT
1 CTTGACTGATGAATCAAT
26374158 GACTTAACCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (20 bp):
CTTGACTGATGAATCAATTG
Found at i:26379279 original size:16 final size:16
Alignment explanation
Indices: 26379258--26379288 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26379248 TTCACTATTA
*
26379258 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
26379274 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
26379289 ACATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:26381124 original size:48 final size:48
Alignment explanation
Indices: 26380912--26381131 Score: 196
Period size: 48 Copynumber: 4.6 Consensus size: 48
26380902 AGATCCCGCA
* ** *
26380912 TAAGACCATATCTAGGATATGGCATCAGCATCGTTATGTGATCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCCCATG
* * * * * *
26380960 TAAGACCATGTCTGAGACATGGCATTGGCATCGATATGAGAACATCATG
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATC-CCATG
* * * * * *
26381009 TAAGACCATAGCTAGGCTATCGGC-TTCG-AT--ATGTGTGATCTCATG
1 TAAGACCATATCTGGGATAT-GGCATTGGCATCGATATGTGATCCCATG
* * * * *
26381054 TAATACCATGTCTGGGACATGGCATTGGCATCGATAAGTGGTCCCATG
1 TAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCCCATG
*
26381102 TAAGACCATATCCGGGATATGGCATTGGCA
1 TAAGACCATATCTGGGATATGGCATTGGCA
26381132 CCCTACTATG
Statistics
Matches: 131, Mismatches: 35, Indels: 12
0.74 0.20 0.07
Matches are distributed among these distances:
44 3 0.02
45 22 0.17
46 9 0.07
48 73 0.56
49 21 0.16
50 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (48 bp):
TAAGACCATATCTGGGATATGGCATTGGCATCGATATGTGATCCCATG
Found at i:26383845 original size:37 final size:35
Alignment explanation
Indices: 26383794--26383904 Score: 111
Period size: 37 Copynumber: 3.0 Consensus size: 35
26383784 ATTCCAAAAA
*
26383794 TAATATTATTTTAATAGTTTAATATTAAATTTAATT
1 TAATATTATCTTAATAGTTTAATATT-AATTTAATT
*
26383830 TAATACTTATCTTAATAGTATT-TTATTAATTTAATAT
1 TAATA-TTATCTTAATAGT-TTAATATTAATTTAAT-T
26383867 TAAAATGATTATCTTAATA-TTTAAT-TTAATTTAGATT
1 T--AAT-ATTATCTTAATAGTTTAATATTAATTTA-ATT
26383904 T
1 T
26383905 TATCTACAAA
Statistics
Matches: 64, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
36 13 0.20
37 30 0.47
38 6 0.09
39 14 0.22
40 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.54
Consensus pattern (35 bp):
TAATATTATCTTAATAGTTTAATATTAATTTAATT
Found at i:26389202 original size:26 final size:26
Alignment explanation
Indices: 26389166--26389225 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
26389156 GAAGCTCCGG
26389166 AGAGCCATTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
26389192 AGAGCCTTTAATTAGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
26389218 AGAGCCAT
1 AGAGCCAT
26389226 ATATAGGTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:26392144 original size:13 final size:12
Alignment explanation
Indices: 26392117--26392150 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
26392107 GCCATGTATT
*
26392117 CACAACCATTTC
1 CACAACCAATTC
26392129 CACAACTCAATTC
1 CACAAC-CAATTC
26392142 CACAACCAA
1 CACAACCAA
26392151 AACATACCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (12 bp):
CACAACCAATTC
Found at i:26393016 original size:43 final size:43
Alignment explanation
Indices: 26392967--26393117 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 43
26392957 TAGATATGGT
*
26392967 TTACATGTTAA-CACATATCGATGCCAATGTTCCAGACAAGGTC
1 TTACATG-TAATCACATATCGATGCCAATGTCCCAGACAAGGTC
* * * *
26393010 ATACATGAAATCGA-TTAACGATGCCAATGTCCCAGACATA-GTC
1 TTACATGTAATC-ACATATCGATGCCAATGTCCCAGACA-AGGTC
* * * *
26393053 TTATATGTAATCTCA-ATACAATGCCAATGTCCCAGACATGGTC
1 TTACATGTAATCACATAT-CGATGCCAATGTCCCAGACAAGGTC
*
26393096 TTACATGTAATCACATCTCGAT
1 TTACATGTAATCACATATCGAT
26393118 AACCTAATGT
Statistics
Matches: 84, Mismatches: 17, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
42 3 0.04
43 78 0.93
44 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
TTACATGTAATCACATATCGATGCCAATGTCCCAGACAAGGTC
Found at i:26394391 original size:25 final size:25
Alignment explanation
Indices: 26394327--26394383 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
26394317 CTGGCTGTTA
*
26394327 CATATTAACCGGAAGCTTGCAAGAAC
1 CATA-TAACAGGAAGCTTGCAAGAAC
* *
26394353 TATATAACAGGAAGTTTGCAAGAAC
1 CATATAACAGGAAGCTTGCAAGAAC
26394378 CATATA
1 CATATA
26394384 GCGTGAAGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 24 0.89
26 3 0.11
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.23
Consensus pattern (25 bp):
CATATAACAGGAAGCTTGCAAGAAC
Found at i:26399926 original size:21 final size:20
Alignment explanation
Indices: 26399902--26399942 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26399892 TTTTTTAAAA
26399902 ATTTTATGAACTTTTTATTTT
1 ATTTTATGAA-TTTTTATTTT
* *
26399923 ATTTTTTTAATTTTTATTTT
1 ATTTTATGAATTTTTATTTT
26399943 TGAATATGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (20 bp):
ATTTTATGAATTTTTATTTT
Found at i:26403198 original size:47 final size:48
Alignment explanation
Indices: 26403097--26403228 Score: 166
Period size: 47 Copynumber: 2.8 Consensus size: 48
26403087 ATCTTCATAT
* * * *
26403097 ATCGATGCCATAGCCC-GCTATGGTCTTACACGAATCACATATCTCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
*
26403144 -T-GATGCCATATCCCAGATATGGTCTTATAC-AGT-AGCATATATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACGAATCA-CATATATCAC
26403189 ATCGATGCCATATCCCAGATATGGTCTTATACGAAATCAC
1 ATCGATGCCATATCCCAGATATGGTCTTATACG-AATCAC
26403229 TTGTCACTTG
Statistics
Matches: 72, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
44 1 0.01
45 23 0.32
46 15 0.21
47 29 0.40
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (48 bp):
ATCGATGCCATATCCCAGATATGGTCTTATACGAATCACATATATCAC
Found at i:26403280 original size:31 final size:31
Alignment explanation
Indices: 26403245--26403422 Score: 222
Period size: 31 Copynumber: 5.8 Consensus size: 31
26403235 CTTGTCACTT
*
26403245 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
26403276 GTAGCC-AGAGCTA-CATTTTTCACT-ATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
26403305 GTAGCC-AGAGCTACCACTTTTCACTGTTCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
*
26403336 GTAACCTGAA-CTACCACTTTTCACTGATCAG
1 GTAGCC-GAAGCTACCACTTTTCACTGATCAG
** *
26403367 GTAGTAGAAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
26403398 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
26403423 TGTCATTTGT
Statistics
Matches: 128, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
29 18 0.14
30 23 0.18
31 85 0.66
32 1 0.01
33 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:26403508 original size:50 final size:51
Alignment explanation
Indices: 26403398--26403526 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
26403388 CACTGATCAG
* * *
26403398 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
* *
26403449 GTAGCCGAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAAATAAGT
*
26403499 GTAGTCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
26403527 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAAATAAGT
Found at i:26404559 original size:9 final size:9
Alignment explanation
Indices: 26404545--26404570 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26404535 CCCAAATTTC
26404545 ACAATTCAT
1 ACAATTCAT
26404554 ACAATTCAT
1 ACAATTCAT
26404563 ACAATTCA
1 ACAATTCA
26404571 GTCCTTGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (9 bp):
ACAATTCAT
Found at i:26409384 original size:47 final size:46
Alignment explanation
Indices: 26409185--26409549 Score: 258
Period size: 47 Copynumber: 7.8 Consensus size: 46
26409175 GGGATATATT
* * * * *
26409185 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATATATGCAT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCATCTCT--AG
** * *
26409235 GCTAATGCATGTCCCAGACATGTCTTACACTAGCA--CAACTCTTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTC-TAG
* * * * *
26409279 GCTGATGCATGTCCCAAACACGTCTTACACTGGCTATCTC-TGTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-A-CTCATCTCTAG
* *
26409326 GCCGATGCATGTCCCAGACATGTCTTACACTAGCACTCATCTCTAA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAG
* * * **
26409372 GCCAATGCCATGTCCCAGACGTGGTCTTACACTGGCTA-TTAT-AGTATG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC-ACTCATCTCTA-G
* * * * ** *
26409420 GCTGATGCATGTGCCAGACATGTCTTACACTAGCACTCGTCTGGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAG
* * * *
26409466 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATGT-G
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCACTCAT-CTCTAG
*
26409514 GCCGAAGCATGTCCCAGACATGTCTTACACTGGCAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCAC
26409550 ACAAATCACC
Statistics
Matches: 248, Mismatches: 51, Indels: 36
0.74 0.15 0.11
Matches are distributed among these distances:
44 30 0.12
45 6 0.02
46 47 0.19
47 89 0.36
48 54 0.22
49 17 0.07
50 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTAG
Found at i:26409446 original size:94 final size:94
Alignment explanation
Indices: 26409185--26409549 Score: 411
Period size: 94 Copynumber: 3.9 Consensus size: 94
26409175 GGGATATATT
* **
26409185 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTTATA-TATGCATGCTAATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATAGTATG---GCCGATGCATGTCC
* *
26409249 CAGACATGTCTTACACTAGCA--CAACTCTTA
63 CAGACATGTCTTACACTAGCACTCATCTCTAA
* * * *
26409279 GCTGATG-CATGTCCCAAACA-CGTCTTACACTGGCTATCTCT-GTCGA-GGCCGATGCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTAT-TATAGT--ATGGCCGATGCATGTCC
26409340 CAGACATGTCTTACACTAGCACTCATCTCTAA
63 CAGACATGTCTTACACTAGCACTCATCTCTAA
* * * *
26409372 GCCAATGCCATGTCCCAGACGTGGTCTTACACTGGCTATTATAGTATGGCTGATGCATGTGCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATAGTATGGCCGATGCATGTCCCAG
* ** *
26409437 ACATGTCTTACACTAGCACTCGTCTGGAT
66 ACATGTCTTACACTAGCACTCATCTCTAA
* * * * * *
26409466 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATAGTATGGCCGATGCATGTCCCAG
*
26409531 ACATGTCTTACACTGGCAC
66 ACATGTCTTACACTAGCAC
26409550 ACAAATCACC
Statistics
Matches: 229, Mismatches: 32, Indels: 20
0.81 0.11 0.07
Matches are distributed among these distances:
91 33 0.14
92 15 0.07
93 28 0.12
94 134 0.59
95 19 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATAGTATGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACTCATCTCTAA
Found at i:26416898 original size:47 final size:45
Alignment explanation
Indices: 26416736--26417097 Score: 236
Period size: 47 Copynumber: 7.7 Consensus size: 45
26416726 GGATATATTA
* * * *
26416736 CCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCATATACACGTG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTATA-G-G
* * * *
26416786 CTGATGCATGTCCCAGACATGTCTTACACTAGCACAACTCT-TA-G
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC-TATCTCTATAGG
*
26416830 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTGTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTAT--AGG
* *
26416877 CCGATGCATGTCCCAGACATGTCTTACACTAGC-ACTCATCTCT-GTG
1 CCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TC-TCTATAG-G
*
26416923 CCGATGCCATGTCCCAGACATAGTCTTACACTGGCTAT-TATATTATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTCTA-TA-GG
* * * * * ** *
26416971 CTGATGCATGTGCCAGACATGTCTTACACTAGCCCT-TGTTTGGATG
1 CCGATGCATGTCCCAGACATGTCTTACACT-G-GCTATCTCTATAGG
* * *
26417017 CCGATGCCATGTCCCAGACATGGTTTTACATTGGC--TCTCATAATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCTC-T-AT-AGG
* * *
26417065 CCGAAGCATGTCTCAGGCATGTCTTACACTGGC
1 CCGATGCATGTCCCAGACATGTCTTACACTGGC
26417098 GCACAAATCA
Statistics
Matches: 250, Mismatches: 40, Indels: 48
0.74 0.12 0.14
Matches are distributed among these distances:
43 5 0.02
44 33 0.13
45 3 0.01
46 40 0.16
47 93 0.37
48 55 0.22
49 16 0.06
50 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCTCTATAGG
Found at i:26416992 original size:94 final size:94
Alignment explanation
Indices: 26416736--26417094 Score: 394
Period size: 94 Copynumber: 3.8 Consensus size: 94
26416726 GGATATATTA
* * * * *
26416736 CCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCATATACACGTGCTGATGCATGTCCCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATATATG-GCCGATGCATGTCCCA
*
26416801 GACATGTCTTACACTAGCA-CAACTCT-TAG
65 GACATGTCTTACACTAGCACCATCTCTGT-G
* *
26416830 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATC-TCTGTCGA-GGCCGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATAT--ATGGCCGATGCATGTCCC
26416891 AGACATGTCTTACACTAGCACTCATCTCTGTG
64 AGACATGTCTTACACTAGCAC-CATCTCTGTG
* * * *
26416923 CCGATGCCATGTCCCAGACATAGTCTTACACTGGCTATTATAT-TATGGCTGATGCATGTGCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATATATGGCCGATGCATGTCCCAG
* * *
26416987 ACATGTCTTACACTAGC-CCTTGTTTGGATG
66 ACATGTCTTACACTAGCACCATCTCT-G-TG
* * * * * *
26417017 CCGATGCCATGTCCCAGACATGGTTTTACATTGGCTCTCATA-ATGTGGCCGAAGCATGTCTCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATATATGGCCGATGCATGTCCCAG
*
26417081 GCATGTCTTACACT
66 ACATGTCTTACACT
26417095 GGCGCACAAA
Statistics
Matches: 228, Mismatches: 25, Indels: 24
0.82 0.09 0.09
Matches are distributed among these distances:
91 36 0.16
92 21 0.09
93 30 0.13
94 122 0.54
95 17 0.07
96 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (94 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCATATATATGGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACCATCTCTGTG
Found at i:26417028 original size:141 final size:140
Alignment explanation
Indices: 26416736--26417094 Score: 347
Period size: 141 Copynumber: 2.6 Consensus size: 140
26416726 GGATATATTA
* * * *
26416736 CCGATGCCATGCCCCAGACATGGTCTTACACTGGCTCTCATATACACGTGCTGATGCATGTCCCA
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCACTCATATACACGTGCCGATGCATGTCCCA
* * *
26416801 GACATGTCTTACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTAT
65 GACATGTCTTACACTAGCACAACTATTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCCAT
26416866 CTCTGTCGAGG
130 CTCTGTCGAGG
* *
26416877 CCGATG-CATGTCCCAGACATGTCTTACACTAGCACTCATCT-C-TGTGCCGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATGTCTTACACTAGCACTCATATACACGTGCCGATG-CATGTCCCA
* ** * *
26416939 GACATAGTCTTACACTGGCTATTA-TATTATGGCTGATGCATGTGCCAGACATGTCTTACACTAG
65 GACAT-GTCTTACACTAGC-ACAACTATTA--GCCGATGCATGTCCCAGACATGTCTTACACTAG
* * * * *
26417003 CCCT-TGTTTGGATG
126 CCATCTCTGTCGAGG
* * * * * * *
26417017 CCGATGCCATGTCCCAGACATGGTTTTACATTGGCTCTC--ATA-ATGTGGCCGAAGCATGTCTC
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTAGCACTCATATACACGT-GCCGATGCATGTCCC
*
26417079 AGGCATGTCTTACACT
64 AGACATGTCTTACACT
26417095 GGCGCACAAA
Statistics
Matches: 181, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
137 8 0.04
138 15 0.08
139 34 0.19
140 38 0.21
141 67 0.37
142 19 0.10
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (140 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTAGCACTCATATACACGTGCCGATGCATGTCCCAG
ACATGTCTTACACTAGCACAACTATTAGCCGATGCATGTCCCAGACATGTCTTACACTAGCCATC
TCTGTCGAGG
Found at i:26431612 original size:26 final size:26
Alignment explanation
Indices: 26431583--26431690 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
26431573 TGGTAGAAAT
*
26431583 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26431609 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26431635 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26431661 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26431687 TGAT
1 TGAT
26431691 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26433352 original size:27 final size:26
Alignment explanation
Indices: 26433312--26433448 Score: 134
Period size: 27 Copynumber: 5.1 Consensus size: 26
26433302 AGGAAGCGTC
*
26433312 CTGGTGGCTATGCCAGAATTATCTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGAT
*
26433339 CTGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTCTGCCAAAT-TATCTGAT
* *
26433365 CCTGGTGGCTATGCCACGATTATCTGAT
1 -CTGGTGGCTCTGCCA-AATTATCTGAT
* *
26433393 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCAAAT-TATCTGAT
*
26433420 CTGGTGGCTCTGTCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCA-AATTATCTG-AT
26433447 CT
1 CT
26433449 AGTGACTTCG
Statistics
Matches: 93, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
26 11 0.12
27 78 0.84
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGAT
Found at i:26433391 original size:54 final size:54
Alignment explanation
Indices: 26433309--26433428 Score: 215
Period size: 54 Copynumber: 2.2 Consensus size: 54
26433299 TGGAGGAAGC
26433309 GTCCTGGTGGCTATGCCAGAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCAGAATTATCTGATCTGGTGGCTCTGCCACATATATCT
26433363 GTCCTGGTGGCTATGCCACG-ATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCA-GAATTATCTGATCTGGTGGCTCTGCCACATATATCT
*
26433417 GTTCTGGTGGCT
1 GTCCTGGTGGCT
26433429 CTGTCACAAT
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
54 63 0.98
55 1 0.02
ACGTcount: A:0.16, C:0.24, G:0.26, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCAGAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:26433461 original size:27 final size:26
Alignment explanation
Indices: 26433331--26433470 Score: 84
Period size: 27 Copynumber: 5.2 Consensus size: 26
26433321 ATGCCAGAAT
* * * *
26433331 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTGTTCTAGTGACTCTGTCACA-A
* * * * * *
26433358 TATCTGTCCTGGTGGCTATGCCACGAT
1 TATCTGTTCTAGTGACTCTGTCAC-AA
* * * *
26433385 TATCTGATCTGGTGGCTCTGCCACATA
1 TATCTGTTCTAGTGACTCTGTCACA-A
* *
26433412 TATCTGTTCTGGTGGCTCTGTCACAA
1 TATCTGTTCTAGTGACTCTGTCACAA
26433438 TATCTGTATCTAGTGACT-TCGTCACAA
1 TATCTGT-TCTAGTGACTCT-GTCACAA
26433465 TATCTG
1 TATCTG
26433471 GCAGCCTCGT
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 86 0.89
28 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (26 bp):
TATCTGTTCTAGTGACTCTGTCACAA
Found at i:26439784 original size:26 final size:26
Alignment explanation
Indices: 26439755--26439862 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
26439745 TGGTATAAAT
26439755 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
26439781 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26439807 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26439833 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26439859 TGAT
1 TGAT
26439863 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26441875 original size:49 final size:49
Alignment explanation
Indices: 26441803--26442045 Score: 240
Period size: 49 Copynumber: 4.9 Consensus size: 49
26441793 GCCGAAGCTA
* * *
26441803 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
26441852 TCTGGTACATGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** * * *
26441902 TCTAATACACGTAGTAGCTTGCACTTAGTACTACACACGTGATC-ACAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * * * * * *
26441950 TTTTCGGGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAATTAT
1 ---TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA-CAG
*
26442003 TC-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
26442046 CCACAATAGT
Statistics
Matches: 157, Mismatches: 29, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
47 2 0.01
48 1 0.01
49 73 0.46
50 41 0.26
51 38 0.24
52 1 0.01
53 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (49 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:26449057 original size:40 final size:40
Alignment explanation
Indices: 26448936--26449075 Score: 124
Period size: 40 Copynumber: 3.5 Consensus size: 40
26448926 GACTTCGAGT
* * * * *
26448936 CGATGAGACACTGGGTGTCAATTTACTACTTCAGATCAATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCAAAT-TATC
* * * *
26448977 CGATGAGGCACTGGGTGTC-AA-T-TTACTTCGATTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCAAATTATC
* *
26449014 CGATGAGACATTGAGTGTCAAATTATTACTTCAAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCAAATTATC
* * *
26449054 CGATGAGGCATTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
26449076 CTGGTGTGTT
Statistics
Matches: 78, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
37 17 0.22
38 9 0.12
39 2 0.03
40 32 0.41
41 18 0.23
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCAAATTATC
Found at i:26451852 original size:25 final size:27
Alignment explanation
Indices: 26451823--26451884 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 27
26451813 TTTTACTGTA
26451823 TTTATTATTACG-GATATTT-T-AAATT
1 TTTATTATTA-GAGATATTTATAAAATT
* *
26451848 TTTATGATTAGATATATTTATAAAATT
1 TTTATTATTAGAGATATTTATAAAATT
*
26451875 ATTATTATTA
1 TTTATTATTA
26451885 TAATTATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 1 0.03
25 15 0.50
26 1 0.03
27 13 0.43
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (27 bp):
TTTATTATTAGAGATATTTATAAAATT
Found at i:26451889 original size:15 final size:15
Alignment explanation
Indices: 26451871--26451899 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26451861 ATATTTATAA
26451871 AATTATTATTATTAT
1 AATTATTATTATTAT
26451886 AATTATTATTATTA
1 AATTATTATTATTA
26451900 GATAGGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:26452855 original size:5 final size:5
Alignment explanation
Indices: 26452837--26452895 Score: 64
Period size: 5 Copynumber: 11.0 Consensus size: 5
26452827 GGATTCAGTT
* *
26452837 TTTTC TTCTTC TTTTC TTTTC TTTTC TTTTC TCTTC ATTTAC TTTCTC
1 TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC -TTTTC TTT-TC
26452885 TTCTTC TTTTC
1 TT-TTC TTTTC
26452896 CCCCATAGCC
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 30 0.65
6 15 0.33
7 1 0.02
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.71
Consensus pattern (5 bp):
TTTTC
Found at i:26452865 original size:15 final size:15
Alignment explanation
Indices: 26452837--26452895 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 15
26452827 GGATTCAGTT
26452837 TTTTCTTCTTCTTTTC
1 TTTTCTT-TTCTTTTC
26452853 TTTTCTTTTCTTTTC
1 TTTTCTTTTCTTTTC
* *
26452868 TCTTCATTTACTTTCTC
1 TTTTC-TTTTCTTT-TC
26452885 TTCTTCTTTTC
1 TT-TTCTTTTC
26452896 CCCCATAGCC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
15 12 0.33
16 14 0.39
17 7 0.19
18 3 0.08
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTCTTTTCTTTTC
Found at i:26458778 original size:13 final size:13
Alignment explanation
Indices: 26458760--26458793 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
26458750 GAAGAAATTG
26458760 AAGTCACACGGCC
1 AAGTCACACGGCC
26458773 AAGTCACACGGCC
1 AAGTCACACGGCC
26458786 AAGTCACA
1 AAGTCACA
26458794 AGCCCATGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.35, C:0.35, G:0.21, T:0.09
Consensus pattern (13 bp):
AAGTCACACGGCC
Found at i:26460443 original size:40 final size:40
Alignment explanation
Indices: 26460399--26460584 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
26460389 GCTACTCGTT
* * *
26460399 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26460439 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
26460479 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
26460519 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26460560 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26460585 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26468494 original size:40 final size:40
Alignment explanation
Indices: 26468450--26468635 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
26468440 GCTACTCGTT
* * *
26468450 CAAATACCTTCGGGACATAGCCCGG-TTATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26468490 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
26468530 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * *
26468570 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26468611 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26468636 CATCATTCGA
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 116 0.88
41 13 0.10
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26470930 original size:26 final size:26
Alignment explanation
Indices: 26470901--26470955 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
26470891 TACATAGTCA
*
26470901 TACTTCCCATAAATTTTGGGTGTGTT
1 TACTTCCCATAAATTTTGGGTGAGTT
26470927 TACTTCCCATAAATTTTGGGTGAGTT
1 TACTTCCCATAAATTTTGGGTGAGTT
26470953 TAC
1 TAC
26470956 CTATACACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (26 bp):
TACTTCCCATAAATTTTGGGTGAGTT
Found at i:26473045 original size:2 final size:2
Alignment explanation
Indices: 26473038--26473077 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
26473028 CCCACTAATT
26473038 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26473078 AGTTTTAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Done.