Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 91 of 325
Found at i:26481952 original size:40 final size:40
Alignment explanation
Indices: 26481907--26482074 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 40
26481897 CGGAATATAA
26481907 CCGGATATAACCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* *** * *
26481947 CCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26481987 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
*** * * * * *
26482027 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
26482067 CCGGATAT
1 CCGGATAT
26482075 CATTCAATTT
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 101 0.99
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (40 bp):
CCGGATATAACCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26482057 original size:80 final size:80
Alignment explanation
Indices: 26481923--26482072 Score: 205
Period size: 80 Copynumber: 1.9 Consensus size: 80
26481913 ATAACCACGT
* *
26481923 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGTCTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
26481988 CGGATGTAGCCACTA
66 CGGATGTAGCCACTA
* * * * *
26482003 GCACAATTGCCTTCGGGTCTTAACCCGGATATAATTTC-CAGCA-TAATTGTCTTCGGGGCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTC-GCACGAA-TGCCTTCGGGGCTTAG
26482066 CCCGGAT
64 CCCGGAT
26482073 ATCATTCAAT
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
79 3 0.05
80 58 0.95
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATAGAATGTCTCGCACGAATGCCTTCGGGGCTTAGCC
CGGATGTAGCCACTA
Found at i:26486270 original size:14 final size:16
Alignment explanation
Indices: 26486240--26486271 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26486230 TAAAACCAAG
26486240 ATATCAAAAAATGAAA
1 ATATCAAAAAATGAAA
26486256 ATAT-AAAAAAT-AAA
1 ATATCAAAAAATGAAA
26486270 AT
1 AT
26486272 TTAATTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 7 0.44
16 4 0.25
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.22
Consensus pattern (16 bp):
ATATCAAAAAATGAAA
Found at i:26494971 original size:50 final size:50
Alignment explanation
Indices: 26494853--26495134 Score: 300
Period size: 50 Copynumber: 5.6 Consensus size: 50
26494843 CTGGTATGCA
* *
26494853 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAAT-TCAGT-CACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGA-TACACG
* * * *
26494902 TAGTAGCCTGCACTTAGTACTGCATACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACG
* * * * * * *
26494952 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGCTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CAATCTGATACACG
* * *
26495003 TAGTAGCCCGCACTGAGTACTACACATGTGACCTAACAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACG
* * * *
26495053 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-AACTGTCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAA---TCTGATACACG
* *
26495105 TAGTAGCCTGCACATAGTACTACGCATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
26495135 TTCTCACAAC
Statistics
Matches: 193, Mismatches: 34, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
49 38 0.20
50 80 0.41
51 41 0.21
52 34 0.18
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACAATCTGATACACG
Found at i:26495038 original size:101 final size:99
Alignment explanation
Indices: 26494853--26495085 Score: 299
Period size: 101 Copynumber: 2.3 Consensus size: 99
26494843 CTGGTATGCA
* * * *
26494853 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTCAGTCACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCGAACAATTCAGTCACGTAGTAGCCCGCACTGA
* * *
26494918 GTACTGCATACGTGACCTAACCATCTGATACACG
66 GTACTACACACGTGACCTAACAATCTGATACACG
* * *
26494952 TAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGCTA-TCGGGT-ACGCATAGTAGCCCGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCGAA-CAATTC-AGTCACG--TAGTAGCCCGCA
* *
26495015 CTGAGTACTACACATGTGACCTAACAATCTGGTACACG
62 CTGAGTACTACACACGTGACCTAACAATCTGATACACG
*
26495053 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
26495086 TAAAACTGTC
Statistics
Matches: 116, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
99 38 0.33
100 4 0.03
101 74 0.64
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCGAACAATTCAGTCACGTAGTAGCCCGCACTGA
GTACTACACACGTGACCTAACAATCTGATACACG
Found at i:26503285 original size:27 final size:27
Alignment explanation
Indices: 26503255--26503313 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
26503245 ACATACTACT
*
26503255 AAGGCAATCGTTTT-AGAATTTTCCACA
1 AAGGCAAT-GTTTTCAGAATTTGCCACA
* * *
26503282 AAGGCTATTTTTTCAGAGTTTGCCACA
1 AAGGCAATGTTTTCAGAATTTGCCACA
26503309 AAGGC
1 AAGGC
26503314 TATTATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (27 bp):
AAGGCAATGTTTTCAGAATTTGCCACA
Found at i:26503314 original size:27 final size:27
Alignment explanation
Indices: 26503265--26503367 Score: 127
Period size: 27 Copynumber: 3.8 Consensus size: 27
26503255 AAGGCAATCG
* *
26503265 TTTTAGAATTTTCCACAAAGGCTATT-
1 TTTTAGAGTTTGCCACAAAGGCTATTA
26503291 TTTTCAGAGTTTGCCACAAAGGCTATTA
1 TTTT-AGAGTTTGCCACAAAGGCTATTA
* * * * *
26503319 TTTTATAGTTCGCTACAAAGGCTGTTC
1 TTTTAGAGTTTGCCACAAAGGCTATTA
26503346 TTTTAGAGTTTGCCACAAAGGC
1 TTTTAGAGTTTGCCACAAAGGC
26503368 CATTCCTTGT
Statistics
Matches: 65, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.06
27 57 0.88
28 4 0.06
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
TTTTAGAGTTTGCCACAAAGGCTATTA
Found at i:26506265 original size:2 final size:2
Alignment explanation
Indices: 26506258--26506284 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26506248 TCAAAACAAA
26506258 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
26506285 ATGATTCACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26507869 original size:46 final size:46
Alignment explanation
Indices: 26507816--26507991 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
26507806 TATTTGGGCA
26507816 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * * *
26507862 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-GCG
*
26507909 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*
26507955 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26507992 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 66 0.59
47 33 0.29
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:26507971 original size:93 final size:93
Alignment explanation
Indices: 26507812--26507983 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
26507802 GGGATATTTG
*
26507812 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
26507877 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
*
26507905 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CTCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTC-CGAACTCGTTGA
26507969 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
26507984 ACTTATGGGC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 1 0.01
93 75 0.99
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:26509469 original size:20 final size:21
Alignment explanation
Indices: 26509435--26509474 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
26509425 ACACACCAAC
26509435 TATATATATACAAAA-AATTG
1 TATATATATACAAAAGAATTG
* *
26509455 TATATATTTATAAAAGAATT
1 TATATATATACAAAAGAATT
26509475 TATTCATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.40
Consensus pattern (21 bp):
TATATATATACAAAAGAATTG
Found at i:26511811 original size:21 final size:21
Alignment explanation
Indices: 26511759--26511816 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
26511749 TATGGACTGG
*
26511759 TTTTTTAAATAATCATAGAAAA
1 TTTTTTAAA-AATTATAGAAAA
*** *
26511781 TTTAAAAAAAATTATAGCAAA
1 TTTTTTAAAAATTATAGAAAA
26511802 TTTTTTAAAAATTAT
1 TTTTTTAAAAATTAT
26511817 TGAGAATTAT
Statistics
Matches: 28, Mismatches: 8, Indels: 1
0.76 0.22 0.03
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.41
Consensus pattern (21 bp):
TTTTTTAAAAATTATAGAAAA
Found at i:26511834 original size:31 final size:30
Alignment explanation
Indices: 26511790--26511847 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
26511780 ATTTAAAAAA
*
26511790 AATTATAGCAAATTTTTTAAAAATTATTGAG
1 AATTATAGCAAA-TTATTAAAAATTATTGAG
*
26511821 AATTATAAG-AAATTATTAATAATTATT
1 AATTAT-AGCAAATTATTAAAAATTATT
26511848 TTTTTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 13 0.54
31 9 0.38
32 2 0.08
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (30 bp):
AATTATAGCAAATTATTAAAAATTATTGAG
Found at i:26512135 original size:17 final size:18
Alignment explanation
Indices: 26512115--26512151 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
26512105 ATAATTTTTA
*
26512115 ATATTTTTTTTAA-AATT
1 ATATATTTTTTAACAATT
26512132 ATATATTTTTTAACAATT
1 ATATATTTTTTAACAATT
26512150 AT
1 AT
26512152 TTAAGAAACG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATATTTTTTAACAATT
Found at i:26515052 original size:40 final size:40
Alignment explanation
Indices: 26515007--26515173 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
26514997 CGGAATATAA
26515007 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26515047 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
26515087 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26515127 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26515166 CCGGATAT
1 CCGGATAT
26515174 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26523039 original size:40 final size:40
Alignment explanation
Indices: 26522994--26523160 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
26522984 CGGAATATAA
26522994 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26523034 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
26523074 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26523114 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26523153 CCGGATAT
1 CCGGATAT
26523161 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26527131 original size:40 final size:40
Alignment explanation
Indices: 26527086--26527251 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
26527076 CGGAATATAA
26527086 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26527126 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
26527166 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26527206 CCGGATA-AATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26527244 CCGGATAT
1 CCGGATAT
26527252 CATTCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
38 12 0.11
39 19 0.18
40 74 0.70
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26535092 original size:40 final size:40
Alignment explanation
Indices: 26535047--26535213 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
26535037 CGGAATATAA
26535047 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26535087 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
26535127 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
26535167 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26535206 CCGGATAT
1 CCGGATAT
26535214 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26543078 original size:40 final size:40
Alignment explanation
Indices: 26543033--26543200 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
26543023 CGGAATATAA
26543033 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
26543073 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
26543113 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
26543153 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
26543193 CCGGATAT
1 CCGGATAT
26543201 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:26550039 original size:15 final size:15
Alignment explanation
Indices: 26550021--26550053 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
26550011 ATGTCTTGAA
26550021 TTAAAACATAGGCAT
1 TTAAAACATAGGCAT
26550036 TTAAAACATAGGCAT
1 TTAAAACATAGGCAT
26550051 TTA
1 TTA
26550054 TGCATTGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (15 bp):
TTAAAACATAGGCAT
Found at i:26551944 original size:12 final size:13
Alignment explanation
Indices: 26551906--26551944 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
26551896 AAATATTTGA
26551906 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
26551919 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
26551933 CTTGTT-TTAATT
1 CTTGTTCTTAATT
26551945 TTCCAAGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 6 0.26
13 5 0.22
14 12 0.52
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:26556138 original size:12 final size:12
Alignment explanation
Indices: 26556111--26556148 Score: 58
Period size: 12 Copynumber: 3.1 Consensus size: 12
26556101 TAGTGAATAC
26556111 AATAATAAGAAAT
1 AATAATAA-AAAT
*
26556124 AATAATAACAAT
1 AATAATAAAAAT
26556136 AATAATAAAAAT
1 AATAATAAAAAT
26556148 A
1 A
26556149 TTTAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 15 0.65
13 8 0.35
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.24
Consensus pattern (12 bp):
AATAATAAAAAT
Found at i:26558091 original size:94 final size:94
Alignment explanation
Indices: 26557958--26558574 Score: 580
Period size: 94 Copynumber: 6.6 Consensus size: 94
26557948 AGTATCATGG
* * * * * * * * * *
26557958 CTTCATCTTGCTCCATTGCAA-TTTAAAGAAATAAGATTTGTTGTTGTAGTTTCATTTCAACTCA
1 CTTCATCTTGCTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCATTCCAACCCA
*
26558022 CTGCAACTTCAATGGTATAGGATTTGTAT
66 CTGCAACTTCAAGGGTATAGGATTTGTAT
* * * * *
26558051 CTTCATCTTGTTTCC-CTACAACTTTAAGAAGATAAGATTTGCTATTGTAGTTTCATTCCAATCC
1 CTTCATCTTG-CTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCATTCCAACCC
* * * *
26558115 ACTGCAACTTTATGAGTATAGGATTTATAGT
65 ACTGCAACTTCAAGGGTATAGGATTTGTA-T
* * * **
26558146 -TTCATCTTGCTCCACTACAACTCTAAGGAGATAAGATTCGCTATGATAGCTTCATTCTGACCCA
1 CTTCATCTTGCTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCATTCCAACCCA
* * * * *
26558210 CTTCATCTTTAAGGGCATAGGATTTGTAA
66 CTGCAACTTCAAGGGTATAGGATTTGTAT
* * * * * *
26558239 CTTCATCTTGCTTCACTAGAACTTCAGGGAGATAAGGTTTGCTATGGTAGCTTCATTCCGACCCA
1 CTTCATCTTGCTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCATTCCAACCCA
* * * **
26558304 CT-CAATTTGAAGGGCATAATATTTGTAGT
66 CTGCAACTTCAAGGGTATAGGATTTGTA-T
* * * * * * *
26558333 -TTCATCTTGCTCCACTGCAACTTTAGGGAGATAAAATTCGTTATGGTAGCTTCAAT-CAGACCT
1 CTTCATCTTGCTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCATTCCA-ACCC
* * * *
26558396 ACTACAACTTCAGGGGTATATGATTTGTAG
65 ACTGCAACTTCAAGGGTATAGGATTTGTAT
* * * * *
26558426 CTTTATCTTGCTCTACTATAACTTTAGGGAGAAAAGATTTGCTATGGTAGCTTCATTCCAACCCA
1 CTTCATCTTGCTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCATTCCAACCCA
* * *
26558491 CTGCAACTTCAGGGGTATAGAATTTGTAG
66 CTGCAACTTCAAGGGTATAGGATTTGTAT
* * * *
26558520 CTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTTATGGTAGCTTCA
1 CTTCATCTTGCTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCA
26558575 ATCTGACCTA
Statistics
Matches: 426, Mismatches: 88, Indels: 19
0.80 0.17 0.04
Matches are distributed among these distances:
92 1 0.00
93 90 0.21
94 332 0.78
95 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (94 bp):
CTTCATCTTGCTCCACTACAACTTTAAGGAGATAAGATTTGCTATGGTAGCTTCATTCCAACCCA
CTGCAACTTCAAGGGTATAGGATTTGTAT
Found at i:26558573 original size:188 final size:188
Alignment explanation
Indices: 26557957--26558611 Score: 694
Period size: 188 Copynumber: 3.5 Consensus size: 188
26557947 TAGTATCATG
* * * * * * * * *
26557957 GCTTCATCTTGCTCCATTGCAA-TTTAAAGAAATAAGATTTGTTGTTGTAGTTTCATTTCA-A-C
1 GCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTTATGGTAGCTTCA-ATCAGACC
* * * * * * *
26558019 TCACTGCAACTTCAATGGTATAGGATTTGTATCTTCATCTTGTTTCCCTACAACTTTAAGAAGAT
65 T-ACTACAACTTCAAGGGTATAGGATTTGTAACTTCATCTTGCTTCACTACAACTTTAGGGAGAT
* * * * * * * *
26558084 AAGATTTGCTATTGTAGTTTCATTCCAATCCACTGCAACTTTATGAGTATAGGATTTATA
129 AAGATTTGCTATGGTAGCTTCATTCCAACCCACTGCAACTTCAAGGGTATAGAATTTGTA
* * * * * *
26558144 GTTTCATCTTGCTCCACTACAAC-TCTAAGGAGATAAGATTCGCTATGATAGCTTCATTCTGACC
1 GCTTCATCTTGCTCCACTGCAACTTC-AAGGAGATAAGATTCGTTATGGTAGCTTCAATCAGACC
* * * * * * *
26558208 CACTTCATCTTTAAGGGCATAGGATTTGTAACTTCATCTTGCTTCACTAGAACTTCAGGGAGATA
65 TACTACAACTTCAAGGGTATAGGATTTGTAACTTCATCTTGCTTCACTACAACTTTAGGGAGATA
* * * * *
26558273 AGGTTTGCTATGGTAGCTTCATTCCGACCCACT-CAATTTGAAGGGCATA-ATATTTGTA
130 AGATTTGCTATGGTAGCTTCATTCCAACCCACTGCAACTTCAAGGGTATAGA-ATTTGTA
* * * *
26558331 GTTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAAATTCGTTATGGTAGCTTCAATCAGACCT
1 GCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTTATGGTAGCTTCAATCAGACCT
* * * * * *
26558396 ACTACAACTTCAGGGGTATATGATTTGTAGCTTTATCTTGC-TCTACTATAACTTTAGGGAGAAA
66 ACTACAACTTCAAGGGTATAGGATTTGTAACTTCATCTTGCTTC-ACTACAACTTTAGGGAGATA
*
26558460 AGATTTGCTATGGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGTATAGAATTTGTA
130 AGATTTGCTATGGTAGCTTCATTCCAACCCACTGCAACTTCAAGGGTATAGAATTTGTA
*
26558519 GCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTTATGGTAGCTTCAATCTGACCT
1 GCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTTATGGTAGCTTCAATCAGACCT
* * * *
26558584 ACTAGAACTTTAGGGGTATATGATTTGT
66 ACTACAACTTCAAGGGTATAGGATTTGT
26558612 TGTTTCACAG
Statistics
Matches: 388, Mismatches: 71, Indels: 17
0.82 0.15 0.04
Matches are distributed among these distances:
186 2 0.01
187 175 0.45
188 209 0.54
189 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (188 bp):
GCTTCATCTTGCTCCACTGCAACTTCAAGGAGATAAGATTCGTTATGGTAGCTTCAATCAGACCT
ACTACAACTTCAAGGGTATAGGATTTGTAACTTCATCTTGCTTCACTACAACTTTAGGGAGATAA
GATTTGCTATGGTAGCTTCATTCCAACCCACTGCAACTTCAAGGGTATAGAATTTGTA
Found at i:26570748 original size:46 final size:46
Alignment explanation
Indices: 26570695--26570870 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
26570685 TATTTGGGCA
26570695 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
26570741 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
26570788 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
26570834 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26570871 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
46 72 0.66
47 37 0.34
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:26570850 original size:93 final size:93
Alignment explanation
Indices: 26570691--26570863 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
26570681 GGGATATTTG
* *
26570691 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
26570756 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
26570784 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
26570849 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
26570864 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:26573859 original size:15 final size:15
Alignment explanation
Indices: 26573820--26573899 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
26573810 GTATCTTGGG
*
26573820 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
26573835 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
26573850 TTTCTTTATTCCGGG
1 TTTCTTTATTCTGGA
*
26573865 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
26573880 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
26573894 TTTCTT
1 TTTCTT
26573900 GTTATCTTTG
Statistics
Matches: 53, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
14 10 0.19
15 41 0.77
16 2 0.04
ACGTcount: A:0.10, C:0.19, G:0.14, T:0.57
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:26573889 original size:30 final size:30
Alignment explanation
Indices: 26573811--26573898 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
26573801 CATAGTATCG
* * *
26573811 TATCTTGGGTTTCTTTA-TCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCC-GGATTTCTC
*
26573841 TAT-TCTGGATTTCTTTATTCCGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCCGGATTTCTC
*
26573871 TATCTTGGATTTCTTTATT-CGGTTTTCT
1 TATCTTGGATTTCTTTATTCCGGATTTCT
26573899 TGTTATCTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
29 9 0.18
30 37 0.74
31 4 0.08
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCCGGATTTCTC
Found at i:26575869 original size:46 final size:46
Alignment explanation
Indices: 26575816--26575991 Score: 219
Period size: 46 Copynumber: 3.8 Consensus size: 46
26575806 TATTTGGGCA
26575816 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
*** * * * *
26575862 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGCGA-GCG
* *
26575909 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
* * *
26575955 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26575992 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
46 72 0.66
47 37 0.34
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
Found at i:26575971 original size:93 final size:93
Alignment explanation
Indices: 26575812--26575984 Score: 310
Period size: 93 Copynumber: 1.9 Consensus size: 93
26575802 GGGATATTTG
* *
26575812 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
26575877 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
26575905 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
26575970 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
26575985 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:26584531 original size:8 final size:8
Alignment explanation
Indices: 26584520--26584548 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26584510 ATGAAAAAGA
26584520 AAAAATAT
1 AAAAATAT
26584528 AAAAATAT
1 AAAAATAT
26584536 AAAAATAT
1 AAAAATAT
26584544 AAAAA
1 AAAAA
26584549 AAAATACCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAAATAT
Found at i:26584688 original size:23 final size:25
Alignment explanation
Indices: 26584659--26584704 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
26584649 TTACAACATA
26584659 TTTTTCTTT-TCATT-TTTTTTTGT
1 TTTTTCTTTATCATTGTTTTTTTGT
*
26584682 TTTTTCTTTATCTTTGTTTTTTT
1 TTTTTCTTTATCATTGTTTTTTT
26584705 ATTCCTCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 9 0.45
24 4 0.20
25 7 0.35
ACGTcount: A:0.04, C:0.09, G:0.04, T:0.83
Consensus pattern (25 bp):
TTTTTCTTTATCATTGTTTTTTTGT
Found at i:26584953 original size:17 final size:18
Alignment explanation
Indices: 26584931--26584979 Score: 64
Period size: 17 Copynumber: 2.7 Consensus size: 18
26584921 TTATTTTTGA
26584931 TTTATTTATTTGGTTT-T
1 TTTATTTATTTGGTTTAT
*
26584948 TTTATTTATTTGATTTAT
1 TTTATTTATTTGGTTTAT
*
26584966 TATTATTTTTTTGG
1 T-TTATTTATTTGG
26584980 GCTGAACGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 15 0.56
18 2 0.07
19 10 0.37
ACGTcount: A:0.16, C:0.00, G:0.10, T:0.73
Consensus pattern (18 bp):
TTTATTTATTTGGTTTAT
Found at i:26585604 original size:18 final size:18
Alignment explanation
Indices: 26585581--26585623 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
26585571 AAGGTACAAT
26585581 ATGATAATTCTAATTTTC
1 ATGATAATTCTAATTTTC
26585599 ATGATAATTCTAATTTTC
1 ATGATAATTCTAATTTTC
26585617 ATGATAA
1 ATGATAA
26585624 CGTGACCATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.47
Consensus pattern (18 bp):
ATGATAATTCTAATTTTC
Found at i:26592518 original size:20 final size:20
Alignment explanation
Indices: 26592466--26592509 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
26592456 ACCATTTCAA
* * *
26592466 ATTTTCTTATTTTCCTTTGC
1 ATTTTATTACTTTCCATTGC
26592486 ATTTTATTACTTTCCATTGC
1 ATTTTATTACTTTCCATTGC
26592506 ATTT
1 ATTT
26592510 ACTTTCTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.18, G:0.05, T:0.61
Consensus pattern (20 bp):
ATTTTATTACTTTCCATTGC
Found at i:26596665 original size:55 final size:56
Alignment explanation
Indices: 26596492--26596678 Score: 313
Period size: 56 Copynumber: 3.4 Consensus size: 56
26596482 ACCATGGCAT
* *
26596492 CGATATATGTGTACGAGTAAGATCACGTTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
*
26596548 CGATATATGTGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
* *
26596604 CGATATATGTGTGTGAGTAAGACCACG-TTTATACATTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
*
26596659 CAATATATGTGTGCGAGTAA
1 CGATATATGTGTGCGAGTAA
26596679 AAACCTATCT
Statistics
Matches: 125, Mismatches: 6, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
55 45 0.36
56 80 0.64
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
Found at i:26596700 original size:111 final size:111
Alignment explanation
Indices: 26596492--26596711 Score: 282
Period size: 111 Copynumber: 2.0 Consensus size: 111
26596482 ACCATGGCAT
* * *
26596492 CGATATATGTGTACGAGTAAGATCACGTTTTATACGTTGGCATCGATATGTGACTCCGATATATG
1 CGATATATGTGTACGAGTAAGACCACGTTTTATACATTGGCATCGATATGTGACTCCAATATATG
* * * * * * *
26596557 TGTGTGAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACTC
66 TGTGCGAGTAAAACCAC-TCTGAGACGGTGGCATCAATATGTGACTC
**
26596604 CGATATATGTGTGTGAGTAAGACCACG-TTTATACATTGGCATCGATATGTGACTCCAATATATG
1 CGATATATGTGTACGAGTAAGACCACGTTTTATACATTGGCATCGATATGTGACTCCAATATATG
*
26596668 TGTGCGAGTAAAAACCTA-TCTGGGACGGTGGCATCAATATGTGA
66 TGTGCGAGT-AAAACC-ACTCTGAGACGGTGGCATCAATATGTGA
26596712 TTACATGTAA
Statistics
Matches: 93, Mismatches: 13, Indels: 5
0.84 0.12 0.05
Matches are distributed among these distances:
111 63 0.68
112 29 0.31
113 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (111 bp):
CGATATATGTGTACGAGTAAGACCACGTTTTATACATTGGCATCGATATGTGACTCCAATATATG
TGTGCGAGTAAAACCACTCTGAGACGGTGGCATCAATATGTGACTC
Found at i:26598321 original size:21 final size:21
Alignment explanation
Indices: 26598280--26598321 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
26598270 GAGCTATAGA
* *
26598280 ATTGAAATATGTTAGTTTGAT
1 ATTGAAATATATTAGTATGAT
26598301 ATTGAAATTATATTAG-ATGAT
1 ATTGAAA-TATATTAGTATGAT
26598322 TAACTATGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.17, T:0.45
Consensus pattern (21 bp):
ATTGAAATATATTAGTATGAT
Found at i:26603807 original size:9 final size:9
Alignment explanation
Indices: 26603778--26603807 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
26603768 TGAATTTCAC
26603778 AATTCGAAT
1 AATTCGAAT
*
26603787 AACTCGAAT
1 AATTCGAAT
26603796 AATTCGAAT
1 AATTCGAAT
26603805 AAT
1 AAT
26603808 ATATTAGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:26603907 original size:20 final size:19
Alignment explanation
Indices: 26603876--26603948 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
26603866 CTCTCGAAAC
26603876 AAAAATTACAAAATAATTTT
1 AAAAATT-CAAAATAATTTT
*
26603896 CAAAAATTCAAAACAATTTT
1 -AAAAATTCAAAATAATTTT
* *
26603916 TAAAATT-AAAAAAATTTAT
1 AAAAATTCAAAATAATTT-T
26603935 AAAAATTTCAAAAT
1 AAAAA-TTCAAAAT
26603949 TTATATTTAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
18 9 0.20
19 11 0.25
20 13 0.30
21 11 0.25
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:26603922 original size:19 final size:19
Alignment explanation
Indices: 26603877--26603938 Score: 63
Period size: 18 Copynumber: 3.2 Consensus size: 19
26603867 TCTCGAAACA
* *
26603877 AAAATTACAAAATAATTTTCA
1 AAAATT-CAAAAAAATTTT-T
*
26603898 AAAATTCAAAACAATTTTT
1 AAAATTCAAAAAAATTTTT
*
26603917 AAAATT-AAAAAAATTTAT
1 AAAATTCAAAAAAATTTTT
26603935 AAAA
1 AAAA
26603939 ATTTCAAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 14 0.38
19 6 0.16
20 11 0.30
21 6 0.16
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (19 bp):
AAAATTCAAAAAAATTTTT
Found at i:26603939 original size:19 final size:19
Alignment explanation
Indices: 26603876--26604006 Score: 80
Period size: 19 Copynumber: 6.9 Consensus size: 19
26603866 CTCTCGAAAC
26603876 AAAAATTACAAAATAATTT-T
1 AAAAATTA-AAAA-AATTTAT
*
26603896 CAAAAATTCAAAACAATTT-T
1 -AAAAATT-AAAAAAATTTAT
*
26603916 TAAAATTAAAAAAATTTAT
1 AAAAATTAAAAAAATTTAT
**
26603935 AAAAATT-TCAAAATTTAT
1 AAAAATTAAAAAAATTTAT
*
26603953 ---ATTTAAAAAAA-TTAT
1 AAAAATTAAAAAAATTTAT
* *
26603968 AAAATTTAAAAAAAATCTA-
1 AAAAATT-AAAAAAATTTAT
26603987 AAAATATATAAAAAAATTTA
1 AAAA-AT-TAAAAAAATTTA
26604007 AAATTTTATA
Statistics
Matches: 88, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
15 7 0.08
16 4 0.05
18 22 0.25
19 24 0.27
20 19 0.22
21 11 0.12
22 1 0.01
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAATTAAAAAAATTTAT
Found at i:26603962 original size:24 final size:24
Alignment explanation
Indices: 26603929--26603975 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26603919 AATTAAAAAA
*
26603929 ATTTATAAAAATT-TCAAAATTTAT
1 ATTTAAAAAAATTAT-AAAATTTAT
26603953 ATTTAAAAAAATTATAAAATTTA
1 ATTTAAAAAAATTATAAAATTTA
26603976 AAAAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
ATTTAAAAAAATTATAAAATTTAT
Found at i:26604016 original size:20 final size:20
Alignment explanation
Indices: 26603935--26604019 Score: 84
Period size: 20 Copynumber: 4.1 Consensus size: 20
26603925 AAAAATTTAT
26603935 AAAAATTTCAAAATTTATATTTAA
1 AAAAATTT-AAAATTT-TA--TAA
26603959 AAAAATTATAAAA-TTTA-AA
1 AAAAATT-TAAAATTTTATAA
* * *
26603978 AAAAATCTAAAAATATATAA
1 AAAAATTTAAAATTTTATAA
26603998 AAAAATTTAAAATTTTATAA
1 AAAAATTTAAAATTTTATAA
26604018 AA
1 AA
26604020 TAATAATTTT
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
18 5 0.09
19 11 0.21
20 21 0.40
22 2 0.04
23 2 0.04
24 11 0.21
25 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATTTAAAATTTTATAA
Found at i:26604019 original size:18 final size:18
Alignment explanation
Indices: 26603925--26604019 Score: 55
Period size: 19 Copynumber: 4.8 Consensus size: 18
26603915 TTAAAATTAA
*
26603925 AAAAATTTATAAAAATTT
1 AAAATTTTATAAAAATTT
26603943 CAAAATTTATATTTAAAAAAATTAT
1 -AAAATTT-TA--T--AAAAATT-T
* * *
26603968 AAAATTTAAAAAAAATCTA
1 AAAATTTTATAAAAAT-TT
* *
26603987 AAAATATATAAAAAAATTT
1 AAAAT-TTTATAAAAATTT
26604006 AAAATTTTATAAAA
1 AAAATTTTATAAAA
26604020 TAATAATTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
18 7 0.12
19 23 0.39
20 12 0.20
22 1 0.02
23 1 0.02
24 14 0.24
25 1 0.02
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATTTTATAAAAATTT
Found at i:26606552 original size:3 final size:3
Alignment explanation
Indices: 26606546--26606625 Score: 160
Period size: 3 Copynumber: 26.7 Consensus size: 3
26606536 AATAATGGAC
26606546 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26606594 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26606626 TTGGTTTTTT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 77 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26607003 original size:50 final size:51
Alignment explanation
Indices: 26606947--26607087 Score: 147
Period size: 44 Copynumber: 2.9 Consensus size: 51
26606937 CTTCATCTTG
* *
26606947 CTCCACTGCATCTTTAGGGAGATAAGATTCGCCATGGTAGCTTCAATCTAA
1 CTCCACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGCTTCAATCTAA
* * **
26606998 C-CCACTACAACTTCAGGG-GTATAGGATT-----T-GTAGCTTC-ATCTTG
1 CTCCACTACAACTTTAGGGAG-ATAAGATTCGCCATGGTAGCTTCAATCTAA
*
26607041 CTCTACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGCTTCAAT
1 CTCCACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGCTTCAAT
26607088 TTGACTAACT
Statistics
Matches: 71, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
43 5 0.07
44 30 0.42
45 2 0.03
49 2 0.03
50 29 0.41
51 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (51 bp):
CTCCACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGCTTCAATCTAA
Found at i:26607021 original size:94 final size:94
Alignment explanation
Indices: 26606923--26607215 Score: 406
Period size: 94 Copynumber: 3.1 Consensus size: 94
26606913 ATTTTAGAGA
* * * *
26606923 TATAGGATTTGTGGCTTCATCTTGCTCCACTGCATCTTTAGGGAGATAAGATTCGCCATGGTAGC
1 TATAAGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGC
*
26606988 TTCAATCTAACCCACTACAACTTCAGGGG
66 TTCAATCTGACCCACTACAACTTCAGGGG
* *
26607017 TATAGGATTTGTAGCTTCATCTTGCTCTACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGC
1 TATAAGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGC
* ** *
26607082 TTCAATTTGACTAACTGCAACTTCAGGGG
66 TTCAATCTGACCCACTACAACTTCAGGGG
* * * * * * *
26607111 TATAAGATTTGTAGCTTTATCTTGCACCATTACAACTTAAGGGAGATAAGATTTGCTATTGTAGC
1 TATAAGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGC
* *
26607176 TTCAATCCGACCCACTACAACTTCAGAGG
66 TTCAATCTGACCCACTACAACTTCAGGGG
26607205 TATAAGATTTG
1 TATAAGATTTG
26607216 AGGTTTCACT
Statistics
Matches: 175, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
94 175 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (94 bp):
TATAAGATTTGTAGCTTCATCTTGCTCCACTACAACTTTAGGGAGATAAGATTCGCCATGGTAGC
TTCAATCTGACCCACTACAACTTCAGGGG
Found at i:26607049 original size:44 final size:44
Alignment explanation
Indices: 26607001--26607165 Score: 131
Period size: 44 Copynumber: 3.6 Consensus size: 44
26606991 AATCTAACCC
* *
26607001 ACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTGCTCT
1 ACTACAACTTCAGGGGTATAAGATTTGTAGCTTCATCTTGCTCA
*
26607045 ACTACAACTTTAGGGAG-ATAAGATTCGCCATGGTAGCTTCAAT-TTGACT-A
1 ACTACAACTTCAGGG-GTATAAGATT-----T-GTAGCTTC-ATCTTG-CTCA
* * * *
26607095 ACTGCAACTTCAGGGGTATAAGATTTGTAGCTTTATCTTGCACC
1 ACTACAACTTCAGGGGTATAAGATTTGTAGCTTCATCTTGCTCA
* *
26607139 ATTACAACTTAAGGGAG-ATAAGATTTG
1 ACTACAACTTCAGGG-GTATAAGATTTG
26607166 CTATTGTAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 26
0.72 0.08 0.19
Matches are distributed among these distances:
43 3 0.03
44 53 0.55
45 3 0.03
49 2 0.02
50 32 0.33
51 4 0.04
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (44 bp):
ACTACAACTTCAGGGGTATAAGATTTGTAGCTTCATCTTGCTCA
Found at i:26607104 original size:50 final size:50
Alignment explanation
Indices: 26606968--26607119 Score: 142
Period size: 50 Copynumber: 3.2 Consensus size: 50
26606958 CTTTAGGGAG
* * **
26606968 ATAAGATTCGCCATGGTAGCTTCAATCTAACCCACTACAACTTCAGGGGT
1 ATAAGATTCGCCATGGTAGCTTCAATTTGACTAACTACAACTTCAGGGGT
* * *
26607018 ATAGGATT-----T-GTAGCTTC-ATCTTG-CTCTACTACAACTTTAGGGAG-
1 ATAAGATTCGCCATGGTAGCTTCAAT-TTGACT-AACTACAACTTCAGGG-GT
*
26607062 ATAAGATTCGCCATGGTAGCTTCAATTTGACTAACTGCAACTTCAGGGGT
1 ATAAGATTCGCCATGGTAGCTTCAATTTGACTAACTACAACTTCAGGGGT
26607112 ATAAGATT
1 ATAAGATT
26607120 TGTAGCTTTA
Statistics
Matches: 80, Mismatches: 10, Indels: 24
0.70 0.09 0.21
Matches are distributed among these distances:
43 3 0.04
44 30 0.38
45 2 0.03
49 2 0.03
50 39 0.49
51 4 0.05
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (50 bp):
ATAAGATTCGCCATGGTAGCTTCAATTTGACTAACTACAACTTCAGGGGT
Found at i:26624967 original size:50 final size:49
Alignment explanation
Indices: 26624849--26625174 Score: 303
Period size: 50 Copynumber: 6.5 Consensus size: 49
26624839 CTGGTATGCA
* * *
26624849 TAGTAGCCTGCACTTAGTACTACACATGCGA-CCAACAGTCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCCACCA-TCCGGTACACG
***
26624898 TAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-CACCATCCGGTACACG
* * *** * * *
26624948 TAGTAGCCTACACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCCA-CCATCCGGTACACG
* * * * **
26624999 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCCACCATCCGGTACACG
* * *
26625048 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-CACCATCCGGTACACG
* * *** * * *
26625098 TAGTAGCCTGCACTTAGTACTACACATGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCCA-CCATCCGGTACACG
26625149 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
26625175 TGCGACCTCA
Statistics
Matches: 227, Mismatches: 43, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
49 69 0.30
50 86 0.38
51 72 0.32
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCCACCATCCGGTACACG
Found at i:26625117 original size:150 final size:150
Alignment explanation
Indices: 26624841--26625181 Score: 603
Period size: 150 Copynumber: 2.3 Consensus size: 150
26624831 GAAGCTATCT
*
26624841 GGTATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCCGGTACACGTAGTAGCC
*
26624906 TGCACTTAGTACTACACACGTGACCTCACCATCTAATACACGTAGTAGCCTACACTTAGTACTAC
66 TGCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTAC
26624971 ACACGTGATCACAGTTTTCG
131 ACACGTGATCACAGTTTTCG
* *
26624991 GGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTA-TCCGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA-CAGTCCGGTACACGTAGTAGC
* *
26625055 CTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTACTA
65 CTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTA
*
26625120 CACATGTGATCACAGTTTTCG
130 CACACGTGATCACAGTTTTCG
26625141 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
26625182 TCACAATAGA
Statistics
Matches: 182, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
150 181 0.99
151 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (150 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCCGGTACACGTAGTAGCC
TGCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTACACTTAGTACTAC
ACACGTGATCACAGTTTTCG
Found at i:26625170 original size:101 final size:96
Alignment explanation
Indices: 26624847--26625174 Score: 334
Period size: 101 Copynumber: 3.3 Consensus size: 96
26624837 ATCTGGTATG
* *
26624847 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACA-TCCGGTACACGTAGTAGCCTGCACT
* ** ***
26624912 TAGTACTACACACGTGACCTCACCATCTAATACA
65 TAGTACTACACATGTGA-C-CATTATCCGGTACA
* * * * * *
26624946 CGTAGTAGCCTACACTTAGTACTACACACGTGATC-ACAGTTTTCGGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACA----TCCGGTACACGTAGTAGCCTGC
* *
26625010 ACATAGTACTACACATGCGACCAATTATCCGGTACA
62 ACTTAGTACTACACATGTGACC-ATTATCCGGTACA
* * *
26625046 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AA-CATCCGGTACACGTAGTAGCCTGCAC
* * *
26625111 TTAGTACTACACATGTGATCACAGTTTTCGGGTACG
64 TTAGTACTACACATGTGA-C-CA-TTATCCGGTACA
26625147 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
26625175 TGCGACCTCA
Statistics
Matches: 190, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
98 3 0.02
99 67 0.35
100 44 0.23
101 73 0.38
102 1 0.01
103 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (96 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACATCCGGTACACGTAGTAGCCTGCACTT
AGTACTACACATGTGACCATTATCCGGTACA
Found at i:26627418 original size:43 final size:43
Alignment explanation
Indices: 26627367--26627453 Score: 117
Period size: 43 Copynumber: 2.0 Consensus size: 43
26627357 ATATGTGATT
*
26627367 TCGATATGTGTTTACGA-GTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGATATGTGGTTAC-ATGTAAGACCGC-GTCTGGGAC-GCTGGCA
26627410 TCGATATGTGGTTACATGTAAGACCGCGTCTGGGACGCTGGCA
1 TCGATATGTGGTTACATGTAAGACCGCGTCTGGGACGCTGGCA
26627453 T
1 T
26627454 TGTACCATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
42 2 0.05
43 37 0.93
44 1 0.03
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (43 bp):
TCGATATGTGGTTACATGTAAGACCGCGTCTGGGACGCTGGCA
Found at i:26629036 original size:2 final size:2
Alignment explanation
Indices: 26629029--26629055 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26629019 CAAGAGATTT
26629029 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
26629056 TTACTTGTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26629902 original size:22 final size:22
Alignment explanation
Indices: 26629874--26629919 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
26629864 TATACACCAG
26629874 ATGAGTGCTTGAAATGTGCCAT
1 ATGAGTGCTTGAAATGTGCCAT
26629896 ATGAGTGCTTGAAATGTGCCAT
1 ATGAGTGCTTGAAATGTGCCAT
26629918 AT
1 AT
26629920 CTTTACTTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (22 bp):
ATGAGTGCTTGAAATGTGCCAT
Found at i:26635515 original size:43 final size:43
Alignment explanation
Indices: 26635440--26635525 Score: 106
Period size: 43 Copynumber: 2.0 Consensus size: 43
26635430 TATGTGATTC
*
26635440 CGATATGTGTTTACGAGTAAGACCCTGCCTGGGACAG-TGGCAT
1 CGATATGTGGTTACGAGTAAGACCCTGCCTGGGAC-GTTGGCAT
*
26635483 CGATATGTGGTTAC-ATGTAAGACCAC-GTCTGGGACGTTGGCAT
1 CGATATGTGGTTACGA-GTAAGACC-CTGCCTGGGACGTTGGCAT
26635526 TGTACCATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 2 0.05
43 35 0.92
44 1 0.03
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (43 bp):
CGATATGTGGTTACGAGTAAGACCCTGCCTGGGACGTTGGCAT
Found at i:26654418 original size:96 final size:96
Alignment explanation
Indices: 26654306--26654503 Score: 360
Period size: 96 Copynumber: 2.1 Consensus size: 96
26654296 TATTTTTAAT
*
26654306 TATCAATTTTGATTTTCCTTTATGAGTAATTATTATTCCTAATATCCCCTAAAAAGTTCCTAATT
1 TATCAATTTCGATTTTCCTTTATGAGTAATTATTATTCCTAATATCCCCTAAAAAGTTCCTAATT
26654371 TTATCACAGTTATATAGAGCTCTTAAGCTCA
66 TTATCACAGTTATATAGAGCTCTTAAGCTCA
*
26654402 TATCAATTTCGGTTTTCCTTTATGAGTAATTATTATTCCTAATATCCCCTAAAAAGTTCCTAATT
1 TATCAATTTCGATTTTCCTTTATGAGTAATTATTATTCCTAATATCCCCTAAAAAGTTCCTAATT
*
26654467 TTATCACAGTTATATAGATCTCTTAAGCTCA
66 TTATCACAGTTATATAGAGCTCTTAAGCTCA
26654498 TCATCA
1 T-ATCA
26654504 CATAGGAACT
Statistics
Matches: 98, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 94 0.96
97 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (96 bp):
TATCAATTTCGATTTTCCTTTATGAGTAATTATTATTCCTAATATCCCCTAAAAAGTTCCTAATT
TTATCACAGTTATATAGAGCTCTTAAGCTCA
Found at i:26656636 original size:71 final size:71
Alignment explanation
Indices: 26656552--26656715 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26656542 CGATTTGTCT
26656552 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26656617 CTTTCA
66 CTTTCA
26656623 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26656688 CTTTCA
66 CTTTCA
26656694 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26656716 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:26656753 original size:71 final size:70
Alignment explanation
Indices: 26656552--26656749 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
26656542 CGATTTGTCT
* * * *
26656552 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26656617 CTTTCA
65 CTTTCA
* * * *
26656623 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26656688 CTTTCA
65 CTTTCA
* *
26656694 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
26656750 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26663819 original size:71 final size:71
Alignment explanation
Indices: 26663735--26663898 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
26663725 CGATTTGTCT
26663735 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26663800 CTTTCA
66 CTTTCA
26663806 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
26663871 CTTTCA
66 CTTTCA
26663877 CGTAGCTCTCTTGTCTACATGG
1 CGTAGCTCTCTTGTCTACATGG
26663899 GATACATCTC
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (71 bp):
CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
CTTTCA
Found at i:26663936 original size:71 final size:70
Alignment explanation
Indices: 26663735--26663932 Score: 258
Period size: 71 Copynumber: 2.8 Consensus size: 70
26663725 CGATTTGTCT
* * * *
26663735 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26663800 CTTTCA
65 CTTTCA
* * * *
26663806 CGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACATTTAT
1 CGTAGCTCTCTTGTCTACATGGTGTACAT-ACTTCGAATCACACATGCGACCTAGCTACATTTAT
26663871 CTTTCA
65 CTTTCA
* *
26663877 CGTAGCTCTCTTGTCTACATGG-GATACAT-C-TCGTATCACACATGTGACCTAGCTAC
1 CGTAGCTCTCTTGTCTACATGGTG-TACATACTTCGAATCACACATGCGACCTAGCTAC
26663933 TACAGGGTGT
Statistics
Matches: 120, Mismatches: 6, Indels: 5
0.92 0.05 0.04
Matches are distributed among these distances:
68 22 0.18
69 1 0.01
70 1 0.01
71 96 0.80
ACGTcount: A:0.21, C:0.28, G:0.17, T:0.34
Consensus pattern (70 bp):
CGTAGCTCTCTTGTCTACATGGTGTACATACTTCGAATCACACATGCGACCTAGCTACATTTATC
TTTCA
Found at i:26667740 original size:40 final size:39
Alignment explanation
Indices: 26667686--26667821 Score: 166
Period size: 40 Copynumber: 3.4 Consensus size: 39
26667676 ATGTTACACT
*
26667686 CTTTTTCTGGCGTGTTTCAGTTGGATTAGCTCTTATGTG
1 CTTTTTCTGGCGTGTTTCAGTTGGATTAGCTCTTATGAG
26667725 CTTTTGTCTGGCGTGTTTCAAG-TGGATTAGCTCTTATGAG
1 CTTTT-TCTGGCGTGTTTC-AGTTGGATTAGCTCTTATGAG
* * * *
26667765 CGTCTTTCTGGTGTGTTTCAATTGGATTAGCTCTTACGAG
1 C-TTTTTCTGGCGTGTTTCAGTTGGATTAGCTCTTATGAG
* *
26667805 CTTCTATCTGGTGTGTT
1 CTT-TTTCTGGCGTGTT
26667822 CGATTTATCT
Statistics
Matches: 85, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
39 7 0.08
40 73 0.86
41 5 0.06
ACGTcount: A:0.12, C:0.16, G:0.26, T:0.46
Consensus pattern (39 bp):
CTTTTTCTGGCGTGTTTCAGTTGGATTAGCTCTTATGAG
Found at i:26670720 original size:13 final size:13
Alignment explanation
Indices: 26670697--26670761 Score: 55
Period size: 12 Copynumber: 5.1 Consensus size: 13
26670687 AGTTTAGTAT
26670697 TATTTTT-AAAAG
1 TATTTTTAAAAAG
*
26670709 TATTTTTAAAAAA
1 TATTTTTAAAAAG
26670722 TA-TTTTAAAAA-
1 TATTTTTAAAAAG
* * *
26670733 TTTGATTTTGAAAGG
1 TAT--TTTTAAAAAG
26670748 TATTTTTAAAAAG
1 TATTTTTAAAAAG
26670761 T
1 T
26670762 TTGGTTTAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
11 1 0.02
12 16 0.39
13 15 0.37
14 7 0.17
15 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (13 bp):
TATTTTTAAAAAG
Found at i:26676751 original size:2 final size:2
Alignment explanation
Indices: 26676738--26676769 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
26676728 CATGCAAAGT
*
26676738 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26676770 ATCTTTCAGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26682648 original size:15 final size:14
Alignment explanation
Indices: 26682614--26682652 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
26682604 TTGACAACAA
* *
26682614 TTATTTTTCAGTAT
1 TTATTTTTTAATAT
26682628 TTATTTTTTAATAT
1 TTATTTTTTAATAT
26682642 TTAATTTTTTA
1 TT-ATTTTTTA
26682653 GTTTATCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (14 bp):
TTATTTTTTAATAT
Found at i:26688270 original size:6 final size:6
Alignment explanation
Indices: 26688231--26688283 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
26688221 GGTGACCGAT
*
26688231 AAAAGA AAATA-A AAGAGA AACAAGA AAAACGA AAAAG- AAAAGA AAAAGA
1 AAAAGA AAA-AGA AAAAGA AA-AAGA AAAA-GA AAAAGA AAAAGA AAAAGA
26688280 AAAA
1 AAAA
26688284 AAATTGAGAA
Statistics
Matches: 40, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
5 6 0.15
6 22 0.55
7 12 0.30
ACGTcount: A:0.79, C:0.04, G:0.15, T:0.02
Consensus pattern (6 bp):
AAAAGA
Found at i:26691166 original size:2 final size:2
Alignment explanation
Indices: 26691159--26691187 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
26691149 TACGATTGAT
26691159 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26691188 CATGTAAACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26693579 original size:3 final size:3
Alignment explanation
Indices: 26693571--26694039 Score: 209
Period size: 3 Copynumber: 157.3 Consensus size: 3
26693561 TAAATAAGTA
26693571 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * * * *
26693619 AAT AAT AAT AAT CGT AGT AGT AAT AAA AAT -AT AAT AGT AAT GAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
** * * *
26693666 AAT AAT -AT AA- AA- AAT -AT AGC AAT AGT AA- AAT AAT GAT ATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26693709 ACAT AA- ATAT ACAT GGAGAT -AT AAT ATAT AA- AAT -AT AAT AAT AACT
1 A-AT AAT A-AT A-AT --A-AT AAT AAT A-AT AAT AAT AAT AAT AAT AA-T
* * *
26693755 GA- AAT -AT AAAT AGAT AAG AA- ATAT AAAT AGAT AAAT AAAT AAA AATT
1 AAT AAT AAT -AAT A-AT AAT AAT A-AT -AAT A-AT -AAT -AAT AAT AA-T
* *
26693802 AGAT AAAT AAT AAG AA- AAT AA- ATAT AGAT GAA- AAT -AT AAT AGT
1 A-AT -AAT AAT AAT AAT AAT AAT A-AT A-AT -AAT AAT AAT AAT AAT
* * * * * *
26693845 AGT AAT AAT -AT AAT AGT AAT AAT AAT AAC AACG AA- AAT AGT AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT
** *
26693889 AAT AAT -AT GTT AAAT AAT AAT AGT AA- AAT -AT ATAT AAT -AT AA-
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * * *
26693931 AA- AAT AAT AGT AAT TAT AAA AAT AAT AAT AGT AA- AAA AAT AA- GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
26693976 GAT GAT GAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
26694024 AAT AAT AAT AAG AAT A
1 AAT AAT AAT AAT AAT A
26694040 TATTAAATAG
Statistics
Matches: 364, Mismatches: 57, Indels: 90
0.71 0.11 0.18
Matches are distributed among these distances:
2 49 0.13
3 267 0.73
4 40 0.11
5 5 0.01
6 3 0.01
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:26693759 original size:17 final size:16
Alignment explanation
Indices: 26693727--26693788 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 16
26693717 ATACATGGAG
*
26693727 ATATAATATAT-A-AA
1 ATATAATAGATAAGAA
26693741 ATATAATA-ATAACTGAA
1 ATATAATAGATAA--GAA
26693758 ATATAAATAGATAAGAA
1 ATAT-AATAGATAAGAA
26693775 ATATAAATAGATAA
1 ATAT-AATAGATAA
26693789 ATAAATAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
13 2 0.05
14 9 0.21
17 23 0.55
18 4 0.10
19 4 0.10
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (16 bp):
ATATAATAGATAAGAA
Found at i:26693788 original size:25 final size:23
Alignment explanation
Indices: 26693760--26693825 Score: 70
Period size: 19 Copynumber: 3.0 Consensus size: 23
26693750 TAACTGAAAT
26693760 ATAAATAGATAAGAAATATAAATAG
1 ATAAATA-ATAAGAAA-ATAAATAG
26693785 ATAAATAA-ATA-AAAAT---TAG
1 ATAAATAATA-AGAAAATAAATAG
26693804 ATAAATAATAAGAAAATAAATA
1 ATAAATAATAAGAAAATAAATA
26693826 TAGATGAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 14
0.71 0.00 0.29
Matches are distributed among these distances:
19 12 0.34
20 6 0.17
22 2 0.06
23 6 0.17
24 2 0.06
25 7 0.20
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (23 bp):
ATAAATAATAAGAAAATAAATAG
Found at i:26693806 original size:19 final size:18
Alignment explanation
Indices: 26693739--26693811 Score: 80
Period size: 17 Copynumber: 4.1 Consensus size: 18
26693729 ATAATATATA
*
26693739 AAATAT-AATA-ATAACT
1 AAATATAAATAGATAAAT
*
26693755 GAAATATAAATAGAT-AAG
1 -AAATATAAATAGATAAAT
26693773 AAATATAAATAGATAAAT
1 AAATATAAATAGATAAAT
*
26693791 AAATAAAAATTAGATAAAT
1 AAATATAAA-TAGATAAAT
26693810 AA
1 AA
26693812 TAAGAAAATA
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
17 20 0.42
18 15 0.31
19 13 0.27
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.26
Consensus pattern (18 bp):
AAATATAAATAGATAAAT
Found at i:26694704 original size:22 final size:22
Alignment explanation
Indices: 26694678--26694722 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26694668 AAAAAAAGAT
26694678 AAATGAATCTTTATATGTATAA
1 AAATGAATCTTTATATGTATAA
26694700 AAATGAATCTTTATATGTATAA
1 AAATGAATCTTTATATGTATAA
26694722 A
1 A
26694723 TAGTTTCGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.40
Consensus pattern (22 bp):
AAATGAATCTTTATATGTATAA
Found at i:26698018 original size:18 final size:18
Alignment explanation
Indices: 26697995--26698032 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
26697985 GAGACTGAAG
*
26697995 GCCAGAAGGTTGAATTGA
1 GCCAGAAAGTTGAATTGA
26698013 GCCAGAAAGTTGAATTGA
1 GCCAGAAAGTTGAATTGA
26698031 GC
1 GC
26698033 TGGCCATAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.21
Consensus pattern (18 bp):
GCCAGAAAGTTGAATTGA
Found at i:26704297 original size:32 final size:31
Alignment explanation
Indices: 26704237--26704297 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 31
26704227 TGGAATAAAC
* * *
26704237 TATATACATAATAAGTTTGAAAGGAAATACG
1 TATATACATAATAAATTTAAAAGAAAATACG
*
26704268 TATATATATGAATAAATTTAAAAGAAAATA
1 TATATACAT-AATAAATTTAAAAGAAAATA
26704298 TAGGCTTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 8 0.32
32 17 0.68
ACGTcount: A:0.54, C:0.03, G:0.11, T:0.31
Consensus pattern (31 bp):
TATATACATAATAAATTTAAAAGAAAATACG
Found at i:26704497 original size:21 final size:19
Alignment explanation
Indices: 26704460--26704502 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
26704450 ACAATTAAAC
26704460 AAAAAAAATCAAATGAAAGT
1 AAAAAAAATCAAATGAAA-T
*
26704480 AAAAAAAATCAAGTTGAAAT
1 AAAAAAAATCAA-ATGAAAT
26704500 AAA
1 AAA
26704503 GTAAAACTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.70, C:0.05, G:0.09, T:0.16
Consensus pattern (19 bp):
AAAAAAAATCAAATGAAAT
Found at i:26708414 original size:54 final size:54
Alignment explanation
Indices: 26708355--26708467 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
26708345 CATGGCTGCT
*
26708355 AGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACC
1 AGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCACC
* * * *
26708409 AGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCACC
1 AGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACC
26708463 AGAAC
1 AGAAC
26708468 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
AGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCACC
Found at i:26708415 original size:27 final size:26
Alignment explanation
Indices: 26708355--26708467 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
26708345 CATGGCTGCT
* *
26708355 AGAACAGATAATGTGACAGAGTCACC
1 AGAACAGATAATGTGGCAGAGCCACC
26708381 AGATACAGATAATCGTGGCAGAGCCACC
1 AGA-ACAGATAAT-GTGGCAGAGCCACC
26708409 AGAACAGATATATGTGGCAGAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
* * *
26708436 AGATCAGATATTTGTGGCATAGCCACC
1 AGAACAGATA-ATGTGGCAGAGCCACC
26708463 AGAAC
1 AGAAC
26708468 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 3 0.04
27 58 0.74
28 17 0.22
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
AGAACAGATAATGTGGCAGAGCCACC
Found at i:26710084 original size:26 final size:26
Alignment explanation
Indices: 26710048--26710209 Score: 270
Period size: 26 Copynumber: 6.2 Consensus size: 26
26710038 CATGAAATTC
26710048 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
26710074 TTATCATGAAACATTTACCTAACCGA
1 TTATCATGAAACATTTACCTAACCCA
26710100 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
26710126 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
26710152 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* *
26710178 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
26710204 TTATCA
1 TTATCA
26710210 ATTTGTATGA
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 132 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:26714193 original size:27 final size:26
Alignment explanation
Indices: 26714156--26714270 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
26714146 AGCATGGCTG
* *
26714156 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
26714182 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
26714210 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
26714237 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
26714264 CCAGAAC
1 CCAGAAC
26714271 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26714215 original size:54 final size:54
Alignment explanation
Indices: 26714156--26714270 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
26714146 AGCATGGCTG
*
26714156 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
26714210 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
26714264 CCAGAAC
1 CCAGAAC
26714271 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:26715915 original size:25 final size:25
Alignment explanation
Indices: 26715858--26716015 Score: 264
Period size: 26 Copynumber: 6.2 Consensus size: 25
26715848 CATGAAATTC
26715858 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
26715884 TTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
26715909 TTATCATGAAACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
26715934 TTATCATG-AACATTTACCTAACCA
1 TTATCATGAAACATTTACCTAACCA
*
26715958 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
*
26715984 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
26716010 TTATCA
1 TTATCA
26716016 ATTTGTATCA
Statistics
Matches: 130, Mismatches: 0, Indels: 4
0.97 0.00 0.03
Matches are distributed among these distances:
24 24 0.18
25 51 0.39
26 55 0.42
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:26718769 original size:28 final size:28
Alignment explanation
Indices: 26718700--26718800 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
26718690 GACAAGATTG
* * * *
26718700 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
26718730 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26718758 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
26718787 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26718801 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26726724 original size:28 final size:28
Alignment explanation
Indices: 26726655--26726755 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 28
26726645 GACAAGATTG
* * * *
26726655 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTT--GATTATATA
26726685 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26726713 GCACTAAGTGTGCGAG-TTGAATACATATA
1 GCACTAAGTGTGCGAGTTTG-AT-TATATA
26726742 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26726756 GATTCACTAT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.05
28 24 0.38
29 19 0.30
30 18 0.28
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26730777 original size:40 final size:40
Alignment explanation
Indices: 26730692--26730842 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
26730682 AATTGAATGA
* * * *
26730692 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
26730732 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
26730773 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
26730812 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
26730843 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:26730856 original size:40 final size:40
Alignment explanation
Indices: 26730729--26730858 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
26730719 ATGCTGGAAA
* * *
26730729 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
26730769 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
26730809 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
26730849 TTATATCCGG
1 TTATATCCGG
26730859 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:26730857 original size:80 final size:80
Alignment explanation
Indices: 26730691--26730858 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
26730681 AAATTGAATG
* *
26730691 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
26730756 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
26730771 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
26730834 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
26730851 ATATCCGG
1 ATATCCGG
26730859 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:26744677 original size:54 final size:54
Alignment explanation
Indices: 26744502--26744706 Score: 229
Period size: 54 Copynumber: 3.9 Consensus size: 54
26744492 TTTCCTTTTT
* * * * * *
26744502 GAACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCGTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* ** *
26744555 GAACTCACCAATGCCATGCCTTGGCATGGTCTT--ATGGGA-CTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
26744606 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * *
26744661 GAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
26744707 ATCTTACCAA
Statistics
Matches: 128, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
50 9 0.07
51 5 0.04
52 29 0.23
53 29 0.23
54 44 0.34
55 12 0.09
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:26750959 original size:16 final size:17
Alignment explanation
Indices: 26750932--26750964 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
26750922 ACTTACTTAA
26750932 TACTTGACAATCTCAAT
1 TACTTGACAATCTCAAT
26750949 TACTT-ACAATCTCAAT
1 TACTTGACAATCTCAAT
26750965 ATTAAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36
Consensus pattern (17 bp):
TACTTGACAATCTCAAT
Found at i:26751263 original size:54 final size:53
Alignment explanation
Indices: 26751081--26751274 Score: 212
Period size: 55 Copynumber: 3.6 Consensus size: 53
26751071 TTACCATTGC
* * * * * *
26751081 CATGTCTTGACATGGACTTACGTGGTATCCTTGCCCTAT-GAACTCACCAATG
1 CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
* **
26751133 CTATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATG
1 C-ATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATAG-AACTCATCAATG
* * * *
26751188 CCATGTCTTGACATGGTCTTACATGATTTCCATGCCTTATAGAACTTATCAATG
1 -CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
26751242 TCATGCCTTGACATGGTCTTACATGATATCCTT
1 -CATGCCTTGACATGGTCTTACATGATATCCTT
26751275 ATATTACCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
52 3 0.03
53 29 0.25
54 41 0.35
55 42 0.36
56 3 0.03
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (53 bp):
CATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATAGAACTCATCAATG
Found at i:26755800 original size:27 final size:25
Alignment explanation
Indices: 26755769--26755827 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
26755759 CCATGTTTAG
*
26755769 AATACTTTAGTTTACTAAAATTACCGA
1 AATACCTTAGTTT-CTAAAA-TACCGA
* *
26755796 AATACCCTTAGTTTGTAAAATACTGA
1 AATA-CCTTAGTTTCTAAAATACCGA
26755822 AATACC
1 AATACC
26755828 CTCGATTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 2 0.07
26 9 0.32
27 9 0.32
28 8 0.29
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34
Consensus pattern (25 bp):
AATACCTTAGTTTCTAAAATACCGA
Found at i:26755827 original size:26 final size:26
Alignment explanation
Indices: 26755775--26755854 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
26755765 TTAGAATACT
* *
26755775 TTAGTTTACTAAAATTACCGAAATACCC
1 TTAGTTT-GTAAAA-TACTGAAATACCC
26755803 TTAGTTTGTAAAATACTGAAATACCC
1 TTAGTTTGTAAAATACTGAAATACCC
* *
26755829 -TCGATTTGTAAATTTACTGAAATACC
1 TTAG-TTTGTAAA-ATACTGAAATACC
26755855 TTCGACTTGT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
25 2 0.04
26 20 0.43
27 17 0.37
28 7 0.15
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (26 bp):
TTAGTTTGTAAAATACTGAAATACCC
Found at i:26755854 original size:27 final size:27
Alignment explanation
Indices: 26755784--26755926 Score: 119
Period size: 27 Copynumber: 5.3 Consensus size: 27
26755774 TTTAGTTTAC
* *
26755784 TAAAATTACCGAAATACCCT-TAGTTTG
1 TAAAATTACTGAAATACCCTCGA-TTTG
26755811 TAAAA-TACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* * *
26755837 TAAATTTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCCTCGATTTG
* *** *
26755864 TAAAATTACCGTTTTACCCTCGATTTA
1 TAAAATTACTGAAATACCCTCGATTTG
* * *** *
26755891 CAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACTGAAATACCCTCGATTTG
26755918 TAAAATTAC
1 TAAAATTAC
26755927 CGTTTTACCC
Statistics
Matches: 96, Mismatches: 18, Indels: 4
0.81 0.15 0.03
Matches are distributed among these distances:
26 21 0.22
27 75 0.78
ACGTcount: A:0.34, C:0.20, G:0.10, T:0.36
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATTTG
Found at i:26755900 original size:54 final size:54
Alignment explanation
Indices: 26755864--26756061 Score: 270
Period size: 54 Copynumber: 3.7 Consensus size: 54
26755854 CTTCGACTTG
26755864 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
*
26755918 TAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
* * * * * * * *
26755972 CAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTTCTCTTGATTTA
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
* * ** *
26756026 CAGAATTACTATTTTACCCTCGATTTACAAAATTAC
1 TAAAATTACCGTTTTACCCTCGATTTACAGAATTAC
26756062 CAAAATACCC
Statistics
Matches: 127, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 127 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (54 bp):
TAAAATTACCGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
Found at i:26755931 original size:27 final size:27
Alignment explanation
Indices: 26755865--26756062 Score: 234
Period size: 27 Copynumber: 7.3 Consensus size: 27
26755855 TTCGACTTGT
26755865 AAAATTACCGTTTTACCCTCGATTTAC
1 AAAATTACCGTTTTACCCTCGATTTAC
* * *
26755892 AGAATTACTGTTTTACCCTCGATTTAT
1 AAAATTACCGTTTTACCCTCGATTTAC
*
26755919 AAAATTACCGTTTTACCCTTGATTTAC
1 AAAATTACCGTTTTACCCTCGATTTAC
* *
26755946 AGAATTACTGTTTTACCCTCGATTTAC
1 AAAATTACCGTTTTACCCTCGATTTAC
* * *
26755973 AAAATTATCGTTTTACCGTCGATTTAT
1 AAAATTACCGTTTTACCCTCGATTTAC
* ** * * *
26756000 AGAATTACTATTTTTCTCTTGATTTAC
1 AAAATTACCGTTTTACCCTCGATTTAC
* **
26756027 AGAATTACTATTTTACCCTCGATTTAC
1 AAAATTACCGTTTTACCCTCGATTTAC
26756054 AAAATTACC
1 AAAATTACC
26756063 AAAATACCCC
Statistics
Matches: 142, Mismatches: 29, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (27 bp):
AAAATTACCGTTTTACCCTCGATTTAC
Found at i:26755952 original size:81 final size:82
Alignment explanation
Indices: 26755867--26756061 Score: 295
Period size: 81 Copynumber: 2.4 Consensus size: 82
26755857 CGACTTGTAA
* * *
26755867 AATTACCGTTTTACCCTCGATTTACAGAATTACT-GTTTTACCCTCGATTTATAAAATTACCGTT
1 AATTACTGTTTTACCCTCGATTTACAAAATTACTCGTTTTACCCTCGATTTATAAAATTACCATT
26755931 TTACCCTTGATTTACAG
66 TTACCCTTGATTTACAG
* * *
26755948 AATTACTGTTTTACCCTCGATTTACAAAATTA-TCGTTTTACCGTCGATTTATAGAATTACTATT
1 AATTACTGTTTTACCCTCGATTTACAAAATTACTCGTTTTACCCTCGATTTATAAAATTACCATT
* *
26756012 TTTCTCTTGATTTACAG
66 TTACCCTTGATTTACAG
*
26756029 AATTACTATTTTACCCTCGATTTACAAAATTAC
1 AATTACTGTTTTACCCTCGATTTACAAAATTAC
26756062 CAAAATACCC
Statistics
Matches: 103, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
80 1 0.01
81 102 0.99
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.43
Consensus pattern (82 bp):
AATTACTGTTTTACCCTCGATTTACAAAATTACTCGTTTTACCCTCGATTTATAAAATTACCATT
TTACCCTTGATTTACAG
Found at i:26756070 original size:27 final size:27
Alignment explanation
Indices: 26756040--26756151 Score: 106
Period size: 27 Copynumber: 4.2 Consensus size: 27
26756030 ATTACTATTT
*
26756040 TACCCTCGATTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
26756067 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* *
26756094 TACCCTAG-TTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
26756120 TACCCAT-GGTTTGA-AAAATTACTAAAA
1 TACCC-TCGATTT-ATAAAATTACCAAAA
26756147 TACCC
1 TACCC
26756152 CTGTAGGGTA
Statistics
Matches: 73, Mismatches: 7, Indels: 10
0.81 0.08 0.11
Matches are distributed among these distances:
26 26 0.36
27 47 0.64
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:26756087 original size:81 final size:81
Alignment explanation
Indices: 26755875--26756090 Score: 227
Period size: 81 Copynumber: 2.7 Consensus size: 81
26755865 AAAATTACCG
* ***** * *
26755875 TTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTG
1 TTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACCATTTTACCCTTG
*
26755940 ATTTACAGAATTACTG
66 ATTTACAGAATTACTA
* **** * * * * * *
26755956 TTTTACCCTCGATTTACAAAATTATCGTTTTACCGTCGATTTATAGAATTACTATTTTTCTCTTG
1 TTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACCATTTTACCCTTG
26756021 ATTTACAGAATTACTA
66 ATTTACAGAATTACTA
*
26756037 TTTTACCCTCGATTTACAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCA
1 TTTTACCCTCGATTTACAAAATTACCAAAATA-CCCTAGATTTATAAAATTACCA
26756091 AAATACCCTA
Statistics
Matches: 114, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
81 110 0.96
82 4 0.04
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.41
Consensus pattern (81 bp):
TTTTACCCTCGATTTACAAAATTACCAAAATACCCTAGATTTATAAAATTACCATTTTACCCTTG
ATTTACAGAATTACTA
Found at i:26756169 original size:27 final size:27
Alignment explanation
Indices: 26756054--26756153 Score: 157
Period size: 27 Copynumber: 3.7 Consensus size: 27
26756044 CTCGATTTAC
26756054 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
26756081 AAAATTACCAAAATA-CCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
* * *
26756107 AAAATTACCAAAATACCCATGGTTTGA
1 AAAATTACCAAAATACCCCTAGTTTGT
*
26756134 AAAATTACTAAAATACCCCT
1 AAAATTACCAAAATACCCCT
26756154 GTAGGGTAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
26 26 0.39
27 41 0.61
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:26756174 original size:27 final size:27
Alignment explanation
Indices: 26756054--26756195 Score: 103
Period size: 27 Copynumber: 5.3 Consensus size: 27
26756044 CTCGATTTAC
* **
26756054 AAAATTACCAAAATACCCCTAGT-TTGT
1 AAAATTACTAAAATACCCCT-GTAGGGT
* **
26756081 AAAATTACCAAAATA-CCCTAGT-TTGT
1 AAAATTACTAAAATACCCCT-GTAGGGT
* * ** *
26756107 AAAATTACCAAAATACCCATGGT-TTGA
1 AAAATTACTAAAATACCCCT-GTAGGGT
26756134 AAAATTACTAAAATACCCCTGTAGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
* * *
26756161 AAAATTACTGAAATACCCTTGTGGGGT
1 AAAATTACTAAAATACCCCTGTAGGGT
26756188 AAAATTAC
1 AAAATTAC
26756196 CATTTTGCCC
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
26 28 0.27
27 74 0.73
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (27 bp):
AAAATTACTAAAATACCCCTGTAGGGT
Found at i:26759803 original size:27 final size:27
Alignment explanation
Indices: 26759727--26759816 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
26759717 TTTAGTTTAC
* *
26759727 TAAAATTACCGAAATACCCTTAG-TTTG
1 TAAAATTACTGAAATA-CCTTCGATTTG
* *
26759754 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTCGATTTG
*
26759781 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTCGATTTG
26759808 TAAAATTAC
1 TAAAATTAC
26759817 CGTTTTACCC
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 4 0.07
27 51 0.93
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTCGATTTG
Found at i:26759825 original size:27 final size:27
Alignment explanation
Indices: 26759768--26760033 Score: 163
Period size: 27 Copynumber: 9.9 Consensus size: 27
26759758 AATACTGAAA
* ***
26759768 TACCCTCGATTTGTAAAATTACTGAAA
1 TACCCTCGATTTGTAAAATTACCGTTT
* *
26759795 TACCTTCGACTTGTAAAATTACCGTTT
1 TACCCTCGATTTGTAAAATTACCGTTT
** * *
26759822 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTGTAAAATTACCGTTT
*
26759849 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTGTAAAATTACCGTTT
* ** * *
26759876 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTGTAAAATTACCGTTT
** * *
26759903 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTGTAAAATTACCGTTT
* * * **
26759930 TACCGTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTGTAAAATTACCGTTT
* * * ** * **
26759957 TTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTGTAAAATTACCGTTT
** *****
26759984 TACCCTCGATTTACAAAATTACAAAAA
1 TACCCTCGATTTGTAAAATTACCGTTT
*
26760011 TACCCTCAATTTGTAAAATTACC
1 TACCCTCGATTTGTAAAATTACC
26760034 AAAATACCCC
Statistics
Matches: 193, Mismatches: 46, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 193 1.00
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTGTAAAATTACCGTTT
Found at i:26759826 original size:54 final size:54
Alignment explanation
Indices: 26759768--26760033 Score: 192
Period size: 54 Copynumber: 4.9 Consensus size: 54
26759758 AATACTGAAA
** * *
26759768 TACCCTCGATTTGTAAAATTACTGAAATACCTTCGACTTGTAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGACTTATAAAATTACCGTTT
* *** *
26759822 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGACTTATAAAATTACCGTTT
* * *** * * * *
26759876 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGACTTATAAAATTACCGTTT
* * * ** * * * * * * **
26759930 TACCGTCGATTTATAGAATTACT-ATTTTTCTCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTGA-AATACCCTCGACTTATAAAATTACCGTTT
** * * *
26759984 TACCCTCGATTTACAAAATTACAAAAATACCCTCAATTTGTAAAATTACC
1 TACCCTCGATTTACAAAATTACTGAAATACCCTCGACTTATAAAATTACC
26760034 AAAATACCCC
Statistics
Matches: 173, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
54 172 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTGAAATACCCTCGACTTATAAAATTACCGTTT
Found at i:26759853 original size:81 final size:81
Alignment explanation
Indices: 26759768--26760004 Score: 250
Period size: 81 Copynumber: 2.9 Consensus size: 81
26759758 AATACTGAAA
*
26759768 TACCCTCGATTTGTAAAATTACTGAAATA-CCTTCGACTTGTA-A-AATTACCGTTTTACCCTCG
1 TACCCTCGATTTATAAAATTACTGAAATACCCTT-GA-TT-TACAGAATTACCGTTTTACCCTCG
* *
26759830 ATTTACAGAATTA-CTGTTT
63 ATTTACAAAATTATC-ATTT
* *** *
26759849 TACCCTCGATTTATAAAATTACCGTTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATT
1 TACCCTCGATTTATAAAATTACTGAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATT
26759914 TACAAAATTATCATTT
66 TACAAAATTATCATTT
* * ** * * **
26759930 TACCGTCGATTTATAGAATTACT-ATTTTTCTCTTGATTTACAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTATAAAATTACTGA-AATACCCTTGATTTACAGAATTACCGTTTTACCCTCGAT
26759994 TTACAAAATTA
65 TTACAAAATTA
26760005 CAAAAATACC
Statistics
Matches: 136, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
79 2 0.01
80 3 0.02
81 126 0.93
82 5 0.04
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAAAATTACTGAAATACCCTTGATTTACAGAATTACCGTTTTACCCTCGATT
TACAAAATTATCATTT
Found at i:26760031 original size:81 final size:80
Alignment explanation
Indices: 26759819--26760034 Score: 279
Period size: 81 Copynumber: 2.7 Consensus size: 80
26759809 AAAATTACCG
* * *
26759819 TTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACCGTTTTACCCTTG
1 TTTTACCCTCGATTTACAAAATTAC-ATTTTACCCTCGATTTATAAAATTACCATTTTACCCTTG
*
26759884 ATTTACAGAATTACTG
65 ATTTACAGAATTACTA
* * * * *
26759900 TTTTACCCTCGATTTACAAAATTATCATTTTACCGTCGATTTATAGAATTACTATTTTTCTCTTG
1 TTTTACCCTCGATTTACAAAATTA-CATTTTACCCTCGATTTATAAAATTACCATTTTACCCTTG
26759965 ATTTACAGAATTACTA
65 ATTTACAGAATTACTA
*** * *
26759981 TTTTACCCTCGATTTACAAAATTACAAAAATACCCTCAATTTGTAAAATTACCA
1 TTTTACCCTCGATTTACAAAATTAC-ATTTTACCCTCGATTTATAAAATTACCA
26760035 AAATACCCCT
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
80 1 0.01
81 114 0.98
82 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.07, T:0.41
Consensus pattern (80 bp):
TTTTACCCTCGATTTACAAAATTACATTTTACCCTCGATTTATAAAATTACCATTTTACCCTTGA
TTTACAGAATTACTA
Found at i:26760037 original size:27 final size:27
Alignment explanation
Indices: 26759984--26760096 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
26759974 ATTACTATTT
* ** *
26759984 TACCCTCGATTTACAAAATTACAAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
26760011 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAA
*
26760038 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTC-AATTTGTAAAATTACCAAAA
** * *
26760065 TACCCAT-GGTTTGAAAAATTACTAAAA
1 TACCC-TCAATTTGTAAAATTACCAAAA
26760092 TACCC
1 TACCC
26760097 CTGTAGGGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.01
27 74 0.99
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.28
Consensus pattern (27 bp):
TACCCTCAATTTGTAAAATTACCAAAA
Found at i:26760108 original size:54 final size:54
Alignment explanation
Indices: 26759998--26760124 Score: 141
Period size: 54 Copynumber: 2.4 Consensus size: 54
26759988 CTCGATTTAC
* **
26759998 AAAATTACAAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
* ** *
26760052 AAAATTACCAAAATACCCAT-GGTTTGAAAAATTACTAAAATACCCCT-GTAGGGT
1 AAAATTACAAAAATACCC-TCAATTTGAAAAATTACCAAAATACCCCTAGT-GGGT
**
26760106 AAAATTACTGAAATACCCT
1 AAAATTACAAAAATACCCT
26760125 TGTGGGGTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
53 3 0.05
54 58 0.94
55 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATTACAAAAATACCCTCAATTTGAAAAATTACCAAAATACCCCTAGTGGGT
Found at i:26760109 original size:27 final size:27
Alignment explanation
Indices: 26760023--26760142 Score: 109
Period size: 27 Copynumber: 4.4 Consensus size: 27
26760013 CCCTCAATTT
**
26760023 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* * **
26760050 GTAAAATTACCAAAATACCCATGGTTT
1 GTAAAATTACCAAAATACCCCTAGTGG
* *
26760077 GAAAAATTACTAAAATACCCCT-GTAGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
** *
26760104 GTAAAATTACTGAAATA-CCCTTGTGGG
1 GTAAAATTACCAAAATACCCCTAGT-GG
26760131 GTAAAATTACCA
1 GTAAAATTACCA
26760143 TTTTGCCCCT
Statistics
Matches: 79, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.08
27 73 0.92
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTGG
Found at i:26762907 original size:48 final size:48
Alignment explanation
Indices: 26762849--26763130 Score: 220
Period size: 48 Copynumber: 5.9 Consensus size: 48
26762839 CGTGACACCG
* *
26762849 TGATAAATGTGCCTATGTAAGAGCATTGCTT-GGACATGGCATCGACGA
1 TGATATATGTGCCTATGTAAGACCA-TGCTTGGGACATGGCATCGACGA
* * * * * *
26762897 TGATATATGTGCCTGTGTAAGATCAAGTTTGGGACATCG-AGTCGTCGA
1 TGATATATGTGCCTATGTAAGACCATGCTTGGGACATGGCA-TCGACGA
* *
26762945 TGATATATGTGCCTATGTAAGACCATGTTTGGGACATGGCATCGGCGA
1 TGATATATGTGCCTATGTAAGACCATGCTTGGGACATGGCATCGACGA
* * **
26762993 TGATATTTGTGCC-AGTGTAAGACCATG-TCTGGGACATGGCCTCGGTGA
1 TGATATATGTGCCTA-TGTAAGACCATGCT-TGGGACATGGCATCGACGA
* * ** * *
26763041 TAATATGTGTGCC-AGTGTAAGACCATG-TCTGATACATGGCATTGACAA
1 TGATATATGTGCCTA-TGTAAGACCATGCT-TGGGACATGGCATCGACGA
* ** *
26763089 TGATATGTG-GATTCATGTAAGACCATG-TCGGGGACATGGCAT
1 TGATATATGTGCCT-ATGTAAGACCATGCT-TGGGACATGGCAT
26763131 TGGTACTTTA
Statistics
Matches: 197, Mismatches: 30, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
47 7 0.04
48 188 0.95
49 2 0.01
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (48 bp):
TGATATATGTGCCTATGTAAGACCATGCTTGGGACATGGCATCGACGA
Found at i:26763013 original size:96 final size:96
Alignment explanation
Indices: 26762849--26763094 Score: 273
Period size: 96 Copynumber: 2.6 Consensus size: 96
26762839 CGTGACACCG
* * * *
26762849 TGATAAATGTGCCTATGTAAGAGCATTGCTT-GGACATGGCATCGACGATGATATATGTGCCTGT
1 TGATATATGTGCCTATGTAAGACCA-TGTTTGGGACATGGCATCGACGATGATATATGTGCCAGT
* * *
26762913 GTAAGATCAAGTTTGGGACATCGAGTC-GTCGA
65 GTAAGACCAAGTCTGGGACATCGACTCGGT-GA
* *
26762945 TGATATATGTGCCTATGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATTTGTGCCAGTG
1 TGATATATGTGCCTATGTAAGACCATGTTTGGGACATGGCATCGACGATGATATATGTGCCAGTG
* * *
26763010 TAAGACCATGTCTGGGACATGGCCTCGGTGA
66 TAAGACCAAGTCTGGGACATCGACTCGGTGA
* * * ** * *
26763041 TAATATGTGTGCC-AGTGTAAGACCATGTCTGATACATGGCATTGACAATGATAT
1 TGATATATGTGCCTA-TGTAAGACCATGTTTGGGACATGGCATCGACGATGATAT
26763095 GTGGATTCAT
Statistics
Matches: 127, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
95 5 0.04
96 120 0.94
97 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (96 bp):
TGATATATGTGCCTATGTAAGACCATGTTTGGGACATGGCATCGACGATGATATATGTGCCAGTG
TAAGACCAAGTCTGGGACATCGACTCGGTGA
Found at i:26764707 original size:28 final size:29
Alignment explanation
Indices: 26764675--26764773 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
26764665 ATAATAAGCC
*
26764675 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
26764703 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
26764731 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
26764760 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26764774 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:26772671 original size:28 final size:29
Alignment explanation
Indices: 26772639--26772737 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
26772629 ATAATAAGCC
*
26772639 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
26772667 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
26772695 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
26772724 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26772738 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:26782759 original size:30 final size:30
Alignment explanation
Indices: 26782723--26782796 Score: 130
Period size: 30 Copynumber: 2.5 Consensus size: 30
26782713 GAACTGGGTT
* *
26782723 AAAATGGTCATTTTGTAAAAGAATAAGGGC
1 AAAATGGTCATTTTGCAAAAGAATAAGGGA
26782753 AAAATGGTCATTTTGCAAAAGAATAAGGGA
1 AAAATGGTCATTTTGCAAAAGAATAAGGGA
26782783 AAAATGGTCATTTT
1 AAAATGGTCATTTT
26782797 TCCCAGTTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (30 bp):
AAAATGGTCATTTTGCAAAAGAATAAGGGA
Found at i:26783489 original size:96 final size:95
Alignment explanation
Indices: 26783271--26783497 Score: 245
Period size: 96 Copynumber: 2.4 Consensus size: 95
26783261 TCGTGACATA
* *
26783271 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAGATGTGTCAGTGTAAAACCATGT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATCAGATGTGTCAATGTAAAACCATGT
26783334 TTAGGACATGGCATCGGCACGGATATGTGAG
66 TTAGGACATGGCATCGGCACGGA-ATGTGAG
* * * * *
26783365 AGCTAGTGTAAGACCATGTTTGAGACATGGCGTCGGCT-TCA-ATTTCGATAGTCAATGTAAGAC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATCAGA--T-G-T-GTCAATGTAAAAC
* *
26783428 CATGTTTGGGACATGGCATC-G-ACTTG-ATG-GATG
61 CATGTTTAGGACATGGCATCGGCAC-GGAATGTGA-G
26783461 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
26783498 ATTATACCCT
Statistics
Matches: 111, Mismatches: 13, Indels: 16
0.79 0.09 0.11
Matches are distributed among these distances:
94 13 0.12
95 16 0.14
96 46 0.41
97 3 0.03
98 3 0.03
99 30 0.27
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTATCAGATGTGTCAATGTAAAACCATGT
TTAGGACATGGCATCGGCACGGAATGTGAG
Found at i:26787405 original size:17 final size:17
Alignment explanation
Indices: 26787371--26787410 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
26787361 TCGTATCAGA
*
26787371 AAGATGGAGTGAATAAG
1 AAGATGGAGTGAAGAAG
**
26787388 AAGATGGAGTGGGGAAG
1 AAGATGGAGTGAAGAAG
26787405 AAGATG
1 AAGATG
26787411 AATGGGAAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.42, T:0.15
Consensus pattern (17 bp):
AAGATGGAGTGAAGAAG
Found at i:26790431 original size:14 final size:14
Alignment explanation
Indices: 26790423--26790457 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
26790413 GGTATGAGCT
26790423 AAATGGTATGAATG
1 AAATGGTATGAATG
26790437 AAATGGTATGAATG
1 AAATGGTATGAATG
*
26790451 AATTGGT
1 AAATGGT
26790458 CGGTTTAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (14 bp):
AAATGGTATGAATG
Found at i:26797288 original size:14 final size:14
Alignment explanation
Indices: 26797269--26797314 Score: 67
Period size: 14 Copynumber: 3.3 Consensus size: 14
26797259 ATGGTAAGAG
26797269 TGGTATGAACT-AAA
1 TGGTATGAA-TGAAA
26797283 TGGTATGAATGAAA
1 TGGTATGAATGAAA
*
26797297 TGGTATGAATGAAT
1 TGGTATGAATGAAA
26797311 TGGT
1 TGGT
26797315 CGATTTAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 1 0.03
14 29 0.97
ACGTcount: A:0.37, C:0.02, G:0.28, T:0.33
Consensus pattern (14 bp):
TGGTATGAATGAAA
Found at i:26803166 original size:48 final size:48
Alignment explanation
Indices: 26803109--26803382 Score: 251
Period size: 46 Copynumber: 5.8 Consensus size: 48
26803099 TCATTGGTGT
* * *
26803109 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGA
* * *
26803157 GTGCTAGTGTAAG-GCATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACG-A
* * *
26803204 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACGAGATGT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGACGA
* * * *
26803249 G-TC-AGTGTAAGACCATGTCTGAGACATGGCATCGGTA-CGGATACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATC-GAGACGA
* * * * *
26803295 GAGCTAGTGTAAGACCATGTCTGGGATATGGCATCAGCCTCAATGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGA-GACGA
* * * *
26803344 TAGCCAGGGTAAGACCATGTCCGGGACATGGCATCGGCA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
26803383 GCTTACCCTG
Statistics
Matches: 182, Mismatches: 32, Indels: 23
0.77 0.14 0.10
Matches are distributed among these distances:
44 9 0.05
45 16 0.09
46 64 0.35
47 16 0.09
48 41 0.23
49 36 0.20
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGA
Found at i:26806389 original size:20 final size:21
Alignment explanation
Indices: 26806365--26806416 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
26806355 AATTAAATTC
26806365 TAAAAGATAAATACAA-ATAAA
1 TAAAAGATAAATA-AAGATAAA
*
26806386 -AAAAGATAATTAAAGATAAA
1 TAAAAGATAAATAAAGATAAA
26806406 TAAAA-ATAAAT
1 TAAAAGATAAAT
26806417 CCTAAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 2 0.07
20 21 0.78
21 4 0.15
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (21 bp):
TAAAAGATAAATAAAGATAAA
Found at i:26806394 original size:10 final size:11
Alignment explanation
Indices: 26806365--26806416 Score: 58
Period size: 10 Copynumber: 5.1 Consensus size: 11
26806355 AATTAAATTC
26806365 TAAAAGATAAA
1 TAAAAGATAAA
*
26806376 TACAA-ATAAA
1 TAAAAGATAAA
26806386 -AAAAGAT-AA
1 TAAAAGATAAA
*
26806395 TTAAAGATAAA
1 TAAAAGATAAA
26806406 TAAAA-ATAAA
1 TAAAAGATAAA
26806416 T
1 T
26806417 CCTAAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
9 5 0.15
10 19 0.56
11 10 0.29
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (11 bp):
TAAAAGATAAA
Done.