Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr04 98600468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 98600468
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 273 characters in sequence are not A, C, G, or T
File 98 of 325
Found at i:28757413 original size:2 final size:2
Alignment explanation
Indices: 28757406--28757437 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
28757396 GAGACTAGTC
28757406 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
28757438 GTCATGATAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28761725 original size:2 final size:2
Alignment explanation
Indices: 28761718--28761743 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
28761708 GAGACTAGTC
28761718 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
28761744 GTCATGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:28763774 original size:30 final size:30
Alignment explanation
Indices: 28763740--28763800 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
28763730 TCCTTAACTC
28763740 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
28763770 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
28763800 A
1 A
28763801 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:28778397 original size:43 final size:43
Alignment explanation
Indices: 28778347--28778455 Score: 105
Period size: 43 Copynumber: 2.5 Consensus size: 43
28778337 TCCTAGTTAT
* * *
28778347 GGTCTTACATGTTATCACATATCAATGCCACTGTTCCACACAG
1 GGTCTTACATGTTATCACATATCAATGCAAATGTCCCACACAG
* ** * *
28778390 GGTCTTACACGAAATCACA-ATACAATGCAAATGTCCCAGACAT
1 GGTCTTACATGTTATCACATAT-CAATGCAAATGTCCCACACAG
*
28778433 GGTATTACAT-TTAATCACATATC
1 GGTCTTACATGTT-ATCACATATC
28778456 GAGTCGATGC
Statistics
Matches: 51, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
42 2 0.04
43 47 0.92
44 2 0.04
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (43 bp):
GGTCTTACATGTTATCACATATCAATGCAAATGTCCCACACAG
Found at i:28778479 original size:47 final size:47
Alignment explanation
Indices: 28778420--28778775 Score: 210
Period size: 49 Copynumber: 7.5 Consensus size: 47
28778410 TACAATGCAA
* *
28778420 ATGTCCCAGACATGGTATTACATTTAATCACATATCGAGTCGATGCC
1 ATGTCCCAGACATGGTCTTACACTTAATCACATATCGAGTCGATGCC
* * * * * *
28778467 ATGTCCTAGACATGGTCTTACACTGACTCTCTTATATCAAGGCCGATGCC
1 ATGTCCCAGACATGGTCTTACACTTAATCAC--ATATCGA-GTCGATGCC
* * * ** * *
28778517 ACTGTCCGACACAGGGTCTTACACGAAATTACA-AT--A--CAATGCC
1 A-TGTCCCAGACATGGTCTTACACTTAATCACATATCGAGTCGATGCC
* *
28778560 AATGTCCCAGACATTGTCTTACATTTAATCACATATCGAGTCGATGCC
1 -ATGTCCCAGACATGGTCTTACACTTAATCACATATCGAGTCGATGCC
* * * *
28778608 ATGTCCCAGACATGGTCTTACACTGT-CTCTCTTATATCGAGGCCAATGCC
1 ATGTCCCAGACATGGTCTTACACT-TAATCAC--ATATCGA-GTCGATGCC
* * *** * * * *
28778658 ATATCCTAGAC-TGGTCTTACACTGGCTCTCCTCTTTCTA-TACCGATGCC
1 ATGTCCCAGACATGGTCTTACACTTAATC-AC-ATATCGAGT--CGATGCC
* * * * *
28778707 ATGTCCTAGACATGGTCCTACA-TTGA-CACATATCAAGCCGATGCC
1 ATGTCCCAGACATGGTCTTACACTTAATCACATATCGAGTCGATGCC
28778752 ATGTCCCAGACATGGTCTTACACT
1 ATGTCCCAGACATGGTCTTACACT
28778776 AGCTCACATG
Statistics
Matches: 236, Mismatches: 52, Indels: 43
0.71 0.16 0.13
Matches are distributed among these distances:
43 29 0.12
44 3 0.01
45 27 0.11
46 7 0.03
47 51 0.22
48 10 0.04
49 52 0.22
50 35 0.15
51 22 0.09
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTTAATCACATATCGAGTCGATGCC
Found at i:28778557 original size:141 final size:141
Alignment explanation
Indices: 28778369--28778658 Score: 492
Period size: 141 Copynumber: 2.1 Consensus size: 141
28778359 TATCACATAT
28778369 CAATGCCACTGTTCCACACAGGGTCTTACACGAAATCACAATACAATGCAAATGTCCCAGACATG
1 CAATGCCACTGTTCCACACAGGGTCTTACACGAAATCACAATACAATGCAAATGTCCCAGACATG
*
28778434 GTATTACATTTAATCACATATCGAGTCGATGCCATGTCCTAGACATGGTCTTACACTGACTCTCT
66 GTATTACATTTAATCACATATCGAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCT
28778499 TATATCAAGGC
131 TATATCAAGGC
* * *
28778510 CGATGCCACTG-TCCGACACAGGGTCTTACACGAAATTACAATACAATGCCAATGTCCCAGACAT
1 CAATGCCACTGTTCC-ACACAGGGTCTTACACGAAATCACAATACAATGCAAATGTCCCAGACAT
* * *
28778574 TGTCTTACATTTAATCACATATCGAGTCGATGCCATGTCCCAGACATGGTCTTACACTGTCTCTC
65 GGTATTACATTTAATCACATATCGAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTC
*
28778639 TTATATCGAGGC
130 TTATATCAAGGC
28778651 CAATGCCA
1 CAATGCCA
28778659 TATCCTAGAC
Statistics
Matches: 139, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
140 3 0.02
141 136 0.98
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (141 bp):
CAATGCCACTGTTCCACACAGGGTCTTACACGAAATCACAATACAATGCAAATGTCCCAGACATG
GTATTACATTTAATCACATATCGAGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCT
TATATCAAGGC
Found at i:28781577 original size:40 final size:39
Alignment explanation
Indices: 28781513--28781598 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
28781503 TTTATATATA
* *
28781513 TAGCCAAAGCTATCTCAAATTGCACACCAAGTGCCACTTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCA-TTT
* * * *
28781553 TAGCCGAAGCTATTTCGAACTGCACACTATGTGCCATTT
1 TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCATTT
28781592 TAGCCGA
1 TAGCCGA
28781599 TAAGTCGTTA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 10 0.25
40 30 0.75
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (39 bp):
TAGCCGAAGCTATCTCAAACTGCACACCAAGTGCCATTT
Found at i:28782979 original size:15 final size:15
Alignment explanation
Indices: 28782943--28782989 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
28782933 AGTTAGGATT
* *
28782943 AGTTTTAATTTAATC
1 AGTTTTTATTTAATA
28782958 A-TATTTTATTTAATA
1 AGT-TTTTATTTAATA
28782973 AGTTTTTATCTTAATA
1 AGTTTTTAT-TTAATA
28782989 A
1 A
28782990 ATTAATAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 1 0.04
15 18 0.67
16 8 0.30
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55
Consensus pattern (15 bp):
AGTTTTTATTTAATA
Found at i:28785670 original size:93 final size:93
Alignment explanation
Indices: 28785558--28785729 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
28785548 GCCCATAAGT
* *
28785558 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
28785623 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
28785651 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
28785716 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
28785730 CAAATATCCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:28785725 original size:46 final size:46
Alignment explanation
Indices: 28785550--28785725 Score: 232
Period size: 46 Copynumber: 3.8 Consensus size: 46
28785540 TGTAACCCGC
* * *
28785550 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
28785596 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* *
28785646 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
28785689 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
28785726 TGCCCAAATA
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 68 0.61
47 32 0.29
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:28792350 original size:42 final size:42
Alignment explanation
Indices: 28792237--28792390 Score: 161
Period size: 42 Copynumber: 3.6 Consensus size: 42
28792227 TACCATACCA
* *
28792237 ATGCCATA-TCCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATTCC-AGATATGGTCTTACACGTAATCTCATATCG
* * *
28792279 ATGCCA-ATAGCACAGTTATGGTCTAACACG-AAGTCTCATATCG
1 ATGCCATAT-TC-CAGATATGGTCTTACACGTAA-TCTCATATCG
* *
28792322 ATGCCATATTCCAAATATGGTCTTACACGTAATCTCATATTG
1 ATGCCATATTCCAGATATGGTCTTACACGTAATCTCATATCG
** *
28792364 ATGCCATACCCCAGGTATGGTCTTACA
1 ATGCCATATTCCAGATATGGTCTTACA
28792391 TGTAGTCTTA
Statistics
Matches: 92, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 1 0.01
42 55 0.60
43 33 0.36
44 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATTCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:28797861 original size:34 final size:34
Alignment explanation
Indices: 28797803--28797867 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
28797793 AGTATTAGTG
* *
28797803 TGGGCCTTAGCCCATAGTAGTAACAGTATCATCA
1 TGGGCCTTAGCCCATAGCACTAACAGTATCATCA
28797837 TGGGCCTTAGCCCATTA-CACTAACAGTATCA
1 TGGGCCTTAGCCCA-TAGCACTAACAGTATCA
28797868 GTAATGCAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 26 0.93
35 2 0.07
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (34 bp):
TGGGCCTTAGCCCATAGCACTAACAGTATCATCA
Found at i:28801798 original size:45 final size:46
Alignment explanation
Indices: 28801701--28801809 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
28801691 AGCTTAAGAT
*
28801701 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
28801748 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
28801793 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
28801810 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:28801935 original size:39 final size:40
Alignment explanation
Indices: 28801880--28801964 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
28801870 AAATGAATTG
* * * *
28801880 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
28801919 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
28801959 TGCTGG
1 TGCTGG
28801965 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:28802621 original size:2 final size:2
Alignment explanation
Indices: 28802614--28802638 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
28802604 ATTAAGTTTT
28802614 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
28802639 TCATGTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:28804567 original size:40 final size:40
Alignment explanation
Indices: 28804512--28804787 Score: 516
Period size: 40 Copynumber: 6.9 Consensus size: 40
28804502 CCTGCCGATG
*
28804512 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGAGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
28804552 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
28804592 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
28804632 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
28804672 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
28804712 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
* * *
28804752 ATTCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
28804788 ATGTGTATTC
Statistics
Matches: 232, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 232 1.00
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTAT
Found at i:28808669 original size:45 final size:46
Alignment explanation
Indices: 28808572--28808680 Score: 150
Period size: 45 Copynumber: 2.3 Consensus size: 46
28808562 AGCTTAAGAT
*
28808572 CGAATGGCCAATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGC
1 CGAATGGCCAATGTGATGAATGTGAAAG-GTGAATATGTGATAAGGC
*
28808619 CGAATGGCCAATGTGAT-ATATGTGTAA-GTGAATATGTGATAAGGC
1 CGAATGGCCAATGTGATGA-ATGTGAAAGGTGAATATGTGATAAGGC
*
28808664 CGAATGACCAATTGTGA
1 CGAATGGCCAA-TGTGA
28808681 AAAGTGTGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
45 27 0.47
46 6 0.11
47 24 0.42
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.28
Consensus pattern (46 bp):
CGAATGGCCAATGTGATGAATGTGAAAGGTGAATATGTGATAAGGC
Found at i:28808805 original size:39 final size:40
Alignment explanation
Indices: 28808750--28808834 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
28808740 AAATGAATTG
* * * *
28808750 TGCTGAGATTGCATCCGGG-TTAGAGACCCGCTGGCTTCA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
* *
28808789 TGCTGGGATTGTATCCGGGTTTAAAGTCCCGCAGGCTTAA
1 TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
28808829 TGCTGG
1 TGCTGG
28808835 TGAATTAAGT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 17 0.44
40 22 0.56
ACGTcount: A:0.18, C:0.22, G:0.32, T:0.28
Consensus pattern (40 bp):
TGCTGGGATTGCATCCGGGTTTAAAGACCCGCAGGCTTAA
Found at i:28819804 original size:29 final size:29
Alignment explanation
Indices: 28819771--28819931 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
28819761 GTGACGAGAT
28819771 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
28819800 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
28819829 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
28819858 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
28819887 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
28819916 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
28819932 AGCTCGAAGG
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 120 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:28819950 original size:87 final size:87
Alignment explanation
Indices: 28819767--28819951 Score: 219
Period size: 87 Copynumber: 2.1 Consensus size: 87
28819757 TATGGTGACG
* * * ** * *
28819767 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
* *
28819831 GCACTAAGTGTGCGTGCTGGAA
66 GCACTAAGTGTGCGAGCTCGAA
* * *
28819853 ATATAAGGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAAAATACG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
**
28819918 GCACTGGGTGTGCGAGCTCGAA
66 GCACTAAGTGTGCGAGCTCGAA
* *
28819940 GGGTATGGCACT
1 AGATATGGCACT
28819952 GTGTGCGGGC
Statistics
Matches: 80, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
86 3 0.04
87 77 0.96
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (87 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
GCACTAAGTGTGCGAGCTCGAA
Found at i:28827889 original size:29 final size:29
Alignment explanation
Indices: 28827856--28828016 Score: 223
Period size: 29 Copynumber: 5.6 Consensus size: 29
28827846 GTGACGAGAT
28827856 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
28827885 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
28827914 TGGCACTAAGTGTGCGTGCTGGAAATATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * *
28827943 AGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* * ** *
28827972 TGACACTATGTGTGCAAGCTGGAAAAATA
1 TGGCACTAAGTGTGCGTGCTGGAAATATA
* **
28828001 CGGCACTGGGTGTGCG
1 TGGCACTAAGTGTGCG
28828017 AGCTCGAAGG
Statistics
Matches: 120, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 120 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGTGCTGGAAATATA
Found at i:28828044 original size:87 final size:87
Alignment explanation
Indices: 28827852--28828036 Score: 219
Period size: 87 Copynumber: 2.1 Consensus size: 87
28827842 TATGGTGACG
* * * ** * *
28827852 AGAT-TGGCACTAAGTGTGCGTGCTGGAAATATATGGCACTAAGTGTGCGTGCTGGAAATATATG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
* *
28827916 GCACTAAGTGTGCGTGCTGGAA
66 GCACTAAGTGTGCGAGCTCGAA
* * *
28827938 ATATAAGGCACTAAGTGTGCATGCTGGAAAAATATGACACTATGTGTGCAAGCTGGAAAAATACG
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
**
28828003 GCACTGGGTGTGCGAGCTCGAA
66 GCACTAAGTGTGCGAGCTCGAA
* *
28828025 GGGTATGGCACT
1 AGATATGGCACT
28828037 GTGTGTGCGG
Statistics
Matches: 80, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
86 3 0.04
87 77 0.96
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (87 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATATGACACTAAGTGTGCAAGCTGGAAAAATACG
GCACTAAGTGTGCGAGCTCGAA
Found at i:28831186 original size:10 final size:10
Alignment explanation
Indices: 28831171--28831202 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
28831161 TAAATGCATT
28831171 TAATTAAAGA
1 TAATTAAAGA
28831181 TAATTAAAGA
1 TAATTAAAGA
28831191 TAATTAAA-A
1 TAATTAAAGA
28831200 TAA
1 TAA
28831203 AATCCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:28831247 original size:15 final size:15
Alignment explanation
Indices: 28831227--28831256 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
28831217 ATAATCTTAA
*
28831227 TAATTATCTTAATAT
1 TAATTATCCTAATAT
28831242 TAATTATCCTAATAT
1 TAATTATCCTAATAT
28831257 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:28832752 original size:5 final size:5
Alignment explanation
Indices: 28832742--28832800 Score: 52
Period size: 6 Copynumber: 11.6 Consensus size: 5
28832732 TTAATATCTG
*
28832742 AATAA AATAA AAT-- AATAA GATAA AAT-A AATAAA AATAAA AATAAA
1 AATAA AATAA AATAA AATAA AATAA AATAA AAT-AA AAT-AA AAT-AA
28832787 AATAA AATGAA AAT
1 AATAA AAT-AA AAT
28832801 TGGGTTGCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
3 3 0.06
4 4 0.09
5 19 0.40
6 21 0.45
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:28832769 original size:23 final size:23
Alignment explanation
Indices: 28832742--28832800 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
28832732 TTAATATCTG
28832742 AATAAAAT-AAAATAATAAGAT-AA
1 AATAAAATAAAAATAA-AA-ATAAA
*
28832765 AATAAAT-AAAAATAAAAATAAA
1 AATAAAATAAAAATAAAAATAAA
*
28832787 AATAAAATGAAAAT
1 AATAAAATAAAAAT
28832801 TGGGTTGCCT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 2 0.07
22 10 0.33
23 18 0.60
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.20
Consensus pattern (23 bp):
AATAAAATAAAAATAAAAATAAA
Found at i:28832773 original size:22 final size:22
Alignment explanation
Indices: 28832746--28832792 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 22
28832736 TATCTGAATA
28832746 AAAT-AAAATAATAAGAT-AAAAT
1 AAATAAAAATAA-AA-ATAAAAAT
28832768 AAATAAAAATAAAAATAAAAAT
1 AAATAAAAATAAAAATAAAAAT
28832790 AAA
1 AAA
28832793 ATGAAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 2 0.09
22 14 0.61
23 7 0.30
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (22 bp):
AAATAAAAATAAAAATAAAAAT
Found at i:28836525 original size:30 final size:30
Alignment explanation
Indices: 28836489--28836550 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
28836479 GCATTTAATA
*
28836489 TAAACTTTGGCAAAATTACATTTTTGCCCC
1 TAAACTTTGGCAAAATTACACTTTTGCCCC
* *
28836519 TAAACTTTTGCATAATTACACTTTTGCCCC
1 TAAACTTTGGCAAAATTACACTTTTGCCCC
28836549 TA
1 TA
28836551 GGCTTGGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (30 bp):
TAAACTTTGGCAAAATTACACTTTTGCCCC
Found at i:28841906 original size:20 final size:20
Alignment explanation
Indices: 28841868--28841910 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
28841858 TAAATTCTAA
* **
28841868 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
28841888 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
28841908 AAA
1 AAA
28841911 ATTAAATTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:28841959 original size:15 final size:15
Alignment explanation
Indices: 28841939--28841968 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
28841929 ATAATCCTAA
*
28841939 TAATTATCTTAATAT
1 TAATTATCCTAATAT
28841954 TAATTATCCTAATAT
1 TAATTATCCTAATAT
28841969 AAATAAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATCCTAATAT
Found at i:28842021 original size:42 final size:42
Alignment explanation
Indices: 28841938--28842022 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
28841928 AATAATCCTA
**
28841938 ATAATTATCTTAATATTAATTATCCTAATATAAATAAAATGG
1 ATAATTATCTTAATATTAATTATAATAATATAAATAAAATGG
28841980 ATAATTATCTTAATATTAATTATAATAATATAAATAAAATGG
1 ATAATTATCTTAATATTAATTATAATAATATAAATAAAATGG
28842022 A
1 A
28842023 GTCTTATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.40
Consensus pattern (42 bp):
ATAATTATCTTAATATTAATTATAATAATATAAATAAAATGG
Found at i:28845146 original size:42 final size:42
Alignment explanation
Indices: 28845035--28845156 Score: 140
Period size: 42 Copynumber: 2.9 Consensus size: 42
28845025 TACCATACCA
* *
28845035 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* * *
28845077 ATGCCAATAGCCCAGCTATGATCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
**
28845120 ATTTCATATCCCAGATATGGTCTTACAC-ATAGTCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGA-AGTCTCA
28845157 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 1 0.01
42 34 0.51
43 32 0.48
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:28850616 original size:143 final size:142
Alignment explanation
Indices: 28850397--28850946 Score: 726
Period size: 143 Copynumber: 3.8 Consensus size: 142
28850387 CAATCTTCTT
* * * * *
28850397 CACTGCAACTTCAGGGAAATGAGATTCGCTGTCTTTAATCTGCTCCGCTACAACTTCAGGAAGAT
1 CACTGCAACGTCA-GGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGGAGAT
* * * * * *
28850462 GAGGCTGGTGGCGTCAATCTACTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAG
65 AAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCCGCCATAACTTGTAG
* *
28850527 CTTTAATATGTTC
130 CTTCAATCTGTTC
* * * * *
28850540 CATTGCAACGCCATGGAAATAAGATTCGTTGTCTTCAGTCTACTCCACTGA-AACTTCAGGGAGA
1 CACTGCAACGTCA-GGAAATAAGATTCGCTGTCTTCAATCTACTCCGCT-ACAACTTCAGGGAGA
*
28850604 TAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAAGAAGATAAGATCCGCCATAACTTGTA
64 TAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCCGCCATAACTTGTA
28850669 GCTTCAATCTGTTC
129 GCTTCAATCTGTTC
* *
28850683 CACTGCAACTTTAGGGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGGAGAT
1 CACTGCAACGTCA-GGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGGAGAT
* * * * *
28850748 AAGGCTAGTGGTTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAGATCCTCCATAACTTGTAG
65 AAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCCGCCATAACTTGTAG
*
28850813 CTTCAATCTATTC
130 CTTCAATCTGTTC
* * * * * *
28850826 CACTACAA-GTTCAGGAAAATAAGATTCGTTGTCTTCAATCTGCTCCGCTGCAACTTTAGGGAGT
1 CACTGCAACG-TCAGG-AAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGGAGA
*
28850890 TAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCTGCCAT
64 TAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCCGCCAT
28850947 CTTCAATCTA
Statistics
Matches: 354, Mismatches: 49, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
142 3 0.01
143 350 0.99
144 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (142 bp):
CACTGCAACGTCAGGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGGAGATA
AGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCCGCCATAACTTGTAGC
TTCAATCTGTTC
Found at i:28850630 original size:44 final size:44
Alignment explanation
Indices: 28850572--28850937 Score: 176
Period size: 44 Copynumber: 7.8 Consensus size: 44
28850562 GATTCGTTGT
* * * *
28850572 CTTCAGTCTACTCCACTGAAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGGTGG
* * * *
28850616 CTTCAATCTGCTCCACTGCAACTTTAAGAAGATAAGATCCGCCATAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG----G------CTGGTGG
* * ** * *
28850670 CTTCAATCTGTTCCACTGCAACTTTAGGGAA-ATAAGATTCGCTGT
1 CTTCAATCTGCTCCACTGCAACTTCA-GGAAGATAAGGCT-GGTGG
* * * * *
28850715 CTTCAATCTACTCCGCTACAACTTCAGGGAGATAAGGCTAGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGGTGG
* * * * *
28850759 TTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAGATCCTCCATAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG----------GCTGGTGG
** * * * ** * *
28850813 CTTCAATCTATTCCACTACAAGTTCAGGAAAATAAGATTCGTTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGGCT-GGTGG
* * * *
28850858 CTTCAATCTGCTCCGCTGCAACTTTAGGGAGTTAAGGCTGGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGGTGG
*
28850902 CTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAG
28850938 ATCTGCCATC
Statistics
Matches: 232, Mismatches: 66, Indels: 48
0.67 0.19 0.14
Matches are distributed among these distances:
44 102 0.44
45 57 0.25
48 1 0.00
54 69 0.30
55 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGGTGG
Found at i:28850737 original size:45 final size:45
Alignment explanation
Indices: 28850670--28850927 Score: 164
Period size: 45 Copynumber: 5.6 Consensus size: 45
28850660 TAACTTGTAG
* *
28850670 CTTCAATCTGTTCCACTGCAACTTTAGGGAAATAAGATTCGCTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGT
* * * * ** *
28850715 CTTCAATCTACTCCGCTACAACTTCAGGGAGATAAGGCTAG-TGGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCT-GT
* *
28850760 -TTCAATCTGCTCCACTGTAACTTCA-GGAAGATAAGATCCTCCATAACTTGT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAA-ATAAGAT--T-C---GC-TGT
** * * * *
28850811 AGCTTCAATCTATTCCACTACAAGTTCAGGAAAATAAGATTCGTTGT
1 --CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGT
* * ** ** * *
28850858 CTTCAATCTGCTCCGCTGCAACTTTAGGGAGTTAAGGCT-GGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGT
28850902 CTTCAATCTGCTCCACTGCAACTTCA
1 CTTCAATCTGCTCCACTGCAACTTCA
28850928 AGAAGATAAG
Statistics
Matches: 158, Mismatches: 41, Indels: 29
0.69 0.18 0.13
Matches are distributed among these distances:
43 3 0.02
44 54 0.34
45 62 0.39
46 1 0.01
47 3 0.02
51 3 0.02
52 2 0.01
54 27 0.17
55 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTGT
Found at i:28850909 original size:286 final size:286
Alignment explanation
Indices: 28850397--28850946 Score: 816
Period size: 286 Copynumber: 1.9 Consensus size: 286
28850387 CAATCTTCTT
* * *
28850397 CACTGCAACTTCAGGGAAATGAGATTCGCTGTCTTTAATCTGCTCCGCTACAACTTCAGGAAGAT
1 CACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGAAGAT
* * *
28850462 GAGGCTGGTGGCGTCAATCTACTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAG
66 AAGGCTAGTGGCGTCAATCTACTCCACTACAACTTCAGGAAGATAAGATCCGCCATAACTTGTAG
* * * * *
28850527 CTTTAATATGTTCCATTGCAACGCCATGGAAATAAGATTCGTTGTCTTCAGTCTACTCCACTGAA
131 CTTCAATATATTCCACTACAACGCCATGGAAATAAGATTCGTTGTCTTCAATCTACTCCACTGAA
*
28850592 ACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTTAAGAAGATAAGATCCG
196 ACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCCG
28850657 CCATAACTTGTAGCTTCAATCTGTTC
261 CCATAACTTGTAGCTTCAATCTGTTC
* *
28850683 CACTGCAACTTTAGGGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGGAGAT
1 CACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGAAGAT
** * ** *
28850748 AAGGCTAGTGGTTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAGATCCTCCATAACTTGTAG
66 AAGGCTAGTGGCGTCAATCTACTCCACTACAACTTCAGGAAGATAAGATCCGCCATAACTTGTAG
* * * *
28850813 CTTCAATCTATTCCACTACAA-GTTCA-GGAAAATAAGATTCGTTGTCTTCAATCTGCTCCGCTG
131 CTTCAATATATTCCACTACAACG-CCATGG-AAATAAGATTCGTTGTCTTCAATCTACTCCACTG
* * *
28850876 CAACTTTAGGGAGTTAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATC
194 AAACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATC
*
28850941 TGCCAT
259 CGCCAT
28850947 CTTCAATCTA
Statistics
Matches: 234, Mismatches: 28, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
285 3 0.01
286 231 0.99
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (286 bp):
CACTGCAACTTCAGGGAAATAAGATTCGCTGTCTTCAATCTACTCCGCTACAACTTCAGGAAGAT
AAGGCTAGTGGCGTCAATCTACTCCACTACAACTTCAGGAAGATAAGATCCGCCATAACTTGTAG
CTTCAATATATTCCACTACAACGCCATGGAAATAAGATTCGTTGTCTTCAATCTACTCCACTGAA
ACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATCCG
CCATAACTTGTAGCTTCAATCTGTTC
Found at i:28852048 original size:1 final size:1
Alignment explanation
Indices: 28852038--28852138 Score: 58
Period size: 1 Copynumber: 101.0 Consensus size: 1
28852028 TGGCCTCTCC
* * * * * * * * * * * *
28852038 TTTTTCTTTTTTCTTTTCTTTTTCTTTTCTTTTTATTTTATTTTATTTTCTTTTCTCTTTTTATT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
28852103 TTTTATTTTTTTTTCTTTTCTTTTTTTCTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
28852139 GAATAAAAGT
Statistics
Matches: 68, Mismatches: 32, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (1 bp):
T
Found at i:28852048 original size:6 final size:6
Alignment explanation
Indices: 28852037--28852135 Score: 71
Period size: 6 Copynumber: 16.0 Consensus size: 6
28852027 TTGGCCTCTC
* *
28852037 CTTTTT CTTTTT -TCTTTT CTTTTT C-TTTT CTTTTT ATTTTATT TTATTTT
1 CTTTTT CTTTTT CT-TTTT CTTTTT CTTTTT CTTTTT -CTTT-TT CT-TTTT
* *
28852087 CTTTTCT CTTTTT ATTTTT -TATTTT -TTTTT CTTTTCT TTTTTT CTTTTT
1 CTTTT-T CTTTTT CTTTTT CT-TTTT CTTTTT CTTTT-T CTTTTT CTTTTT
28852136 TTTGAATAAA
Statistics
Matches: 78, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
5 11 0.14
6 43 0.55
7 20 0.26
8 4 0.05
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (6 bp):
CTTTTT
Found at i:28852054 original size:5 final size:5
Alignment explanation
Indices: 28852046--28852138 Score: 70
Period size: 5 Copynumber: 18.8 Consensus size: 5
28852036 CCTTTTTCTT
* * *
28852046 TTTTC TTTTC TTTTTC TTTTC TTTTTA TTTTA TTTTA TTTTC TTTTC TCTTT-
1 TTTTC TTTTC -TTTTC TTTTC -TTTTC TTTTC TTTTC TTTTC TTTTC T-TTTC
* *
28852098 TTATT- TTTTA TTTTT TTTTC TTTTC -TTT- TTTTC TTTT- TTTT
1 TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
28852139 GAATAAAAGT
Statistics
Matches: 77, Mismatches: 4, Indels: 15
0.80 0.04 0.16
Matches are distributed among these distances:
4 13 0.17
5 52 0.68
6 12 0.16
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (5 bp):
TTTTC
Found at i:28852061 original size:11 final size:11
Alignment explanation
Indices: 28852039--28852127 Score: 83
Period size: 11 Copynumber: 7.9 Consensus size: 11
28852029 GGCCTCTCCT
28852039 TTTTCTTTTTTC
1 TTTTC-TTTTTC
28852051 TTTTCTTTTTC
1 TTTTCTTTTTC
*
28852062 TTTTCTTTTTA
1 TTTTCTTTTTC
* *
28852073 TTTT-ATTTTA
1 TTTTCTTTTTC
28852083 TTTTCTTTTCTC
1 TTTTCTTTT-TC
*
28852095 TTTT-TATTTTT
1 TTTTCT-TTTTC
*
28852106 TATTTTTTTTTC
1 T-TTTCTTTTTC
28852118 TTTTCTTTTT
1 TTTTCTTTTT
28852128 TTCTTTTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
10 9 0.14
11 34 0.52
12 21 0.32
13 1 0.02
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:28860258 original size:4 final size:4
Alignment explanation
Indices: 28860244--28860277 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
28860234 TGCAAAAAAC
* *
28860244 AAAT GAAT AAAT AAAT AAAT AAAT AAAT AGAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
28860278 GTCAAAGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:28861895 original size:22 final size:23
Alignment explanation
Indices: 28861869--28861913 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
28861859 CTAAAATCGA
28861869 TTAAACAATA-ATTCGAAAAATT
1 TTAAACAATATATTCGAAAAATT
* * *
28861891 TTAAATATTATTTTCGAAAAATT
1 TTAAACAATATATTCGAAAAATT
28861914 AATTTTAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (23 bp):
TTAAACAATATATTCGAAAAATT
Found at i:28864435 original size:16 final size:17
Alignment explanation
Indices: 28864413--28864456 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
28864403 CATCCCATAA
28864413 TCATTTCTCATATTTTC
1 TCATTTCTCATATTTTC
*
28864430 -CATTTC-AATATTTTC
1 TCATTTCTCATATTTTC
28864445 TCA--TCTCATATT
1 TCATTTCTCATATT
28864457 AATTTCTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
14 2 0.09
15 13 0.57
16 8 0.35
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.55
Consensus pattern (17 bp):
TCATTTCTCATATTTTC
Found at i:28865283 original size:16 final size:17
Alignment explanation
Indices: 28865262--28865296 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
28865252 ACTTCATATT
*
28865262 TTTATACTA-ATTTCAC
1 TTTATACCACATTTCAC
28865278 TTTATACCACATTTCAC
1 TTTATACCACATTTCAC
28865295 TT
1 TT
28865297 CCTCTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.29, C:0.23, G:0.00, T:0.49
Consensus pattern (17 bp):
TTTATACCACATTTCAC
Found at i:28867961 original size:13 final size:12
Alignment explanation
Indices: 28867943--28867976 Score: 50
Period size: 13 Copynumber: 2.7 Consensus size: 12
28867933 GCGTTTCTTC
28867943 TTCTTTTCTTTCT
1 TTCTTTTCTTT-T
28867956 TTCTTTTCTTTT
1 TTCTTTTCTTTT
28867968 TTGCTTTTC
1 TT-CTTTTC
28867977 CTTGTTTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 3 0.15
13 17 0.85
ACGTcount: A:0.00, C:0.21, G:0.03, T:0.76
Consensus pattern (12 bp):
TTCTTTTCTTTT
Found at i:28868779 original size:18 final size:18
Alignment explanation
Indices: 28868758--28868796 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
28868748 GAGCAGTGAT
28868758 AGTAATCAGTGCAATAAC
1 AGTAATCAGTGCAATAAC
*
28868776 AGTAATCAGTGCAGTAAC
1 AGTAATCAGTGCAATAAC
28868794 AGT
1 AGT
28868797 TTAAACAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.23
Consensus pattern (18 bp):
AGTAATCAGTGCAATAAC
Found at i:28869191 original size:27 final size:27
Alignment explanation
Indices: 28869161--28869225 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
28869151 AGGGGCATTT
28869161 CAGTCATTTTACCACATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
* *
28869188 CAGTCATTTAACCTCATAAGGGCAAAA
1 CAGTCATTTTACCACATAAGGGCAAAA
*
28869215 CAATCATTTTA
1 CAGTCATTTTA
28869226 TCGATTAAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.22, G:0.12, T:0.26
Consensus pattern (27 bp):
CAGTCATTTTACCACATAAGGGCAAAA
Found at i:28871722 original size:29 final size:29
Alignment explanation
Indices: 28871690--28871796 Score: 126
Period size: 29 Copynumber: 3.7 Consensus size: 29
28871680 ATACCCTCCG
* *
28871690 AGCTCGCACACCTAGTGCCGTATTTTTCC
1 AGCTCGCACACTTAGTGCCATATTTTTCC
* * *
28871719 AGCTTGCACACATAGTGTCATATTTTTCC
1 AGCTCGCACACTTAGTGCCATATTTTTCC
* *
28871748 AGCAT-GCACACTTAGTGCCTTATATTTCC
1 AGC-TCGCACACTTAGTGCCATATTTTTCC
*
28871777 AGCACGCACACTTAGTGCCA
1 AGCTCGCACACTTAGTGCCA
28871797 ATCTCGTCAC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
29 65 0.98
30 1 0.02
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (29 bp):
AGCTCGCACACTTAGTGCCATATTTTTCC
Found at i:28879695 original size:28 final size:28
Alignment explanation
Indices: 28879621--28879710 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 28
28879611 TCGCACACCC
* * *
28879621 AGTGCCGTATTTTTCCAGCTTGCACACAT
1 AGTGCC-TATATTTCCAGCATGCACACTT
*
28879650 AGTGTC-ATATTTCCAGCATGCACACTT
1 AGTGCCTATATTTCCAGCATGCACACTT
*
28879677 AGTGCCTATATTTCCAGCACGCACACTT
1 AGTGCCTATATTTCCAGCATGCACACTT
28879705 AGTGCC
1 AGTGCC
28879711 ATCTCGCACC
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
27 23 0.43
28 26 0.48
29 5 0.09
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (28 bp):
AGTGCCTATATTTCCAGCATGCACACTT
Found at i:28885061 original size:39 final size:40
Alignment explanation
Indices: 28885014--28885174 Score: 150
Period size: 40 Copynumber: 4.1 Consensus size: 40
28885004 CCTTCGGAAT
* *
28885014 TTAA-CCGGATATAACCACAAGCACAATTGCCTTCGGG-C
1 TTAACCCGGATATAACAACTAGCACAATTGCCTTCGGGTC
* ** *
28885052 TTAACCCGGATTTAGTAACTTGCACAATTGCCTTCGGGTC
1 TTAACCCGGATATAACAACTAGCACAATTGCCTTCGGGTC
* * *
28885092 TTAACCCAGATATAACAACTCGCACGAA-TGCCTTTGGGTC
1 TTAACCCGGATATAACAACTAGCAC-AATTGCCTTCGGGTC
* * * * *
28885132 TTAGCCCGGATATAATC-ACTAGCATAAATACCTTCGGGAC
1 TTAACCCGGATATAA-CAACTAGCACAATTGCCTTCGGGTC
28885172 TTA
1 TTA
28885175 GCCCAGGTAT
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
38 4 0.04
39 29 0.29
40 63 0.64
41 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (40 bp):
TTAACCCGGATATAACAACTAGCACAATTGCCTTCGGGTC
Found at i:28890394 original size:13 final size:13
Alignment explanation
Indices: 28890376--28890400 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28890366 TGTAGTTTGT
28890376 TTTGATATGTTTC
1 TTTGATATGTTTC
28890389 TTTGATATGTTT
1 TTTGATATGTTT
28890401 TTGGTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (13 bp):
TTTGATATGTTTC
Found at i:28891324 original size:27 final size:27
Alignment explanation
Indices: 28891294--28891452 Score: 246
Period size: 27 Copynumber: 5.9 Consensus size: 27
28891284 ACATACATCA
* * *
28891294 CATAGGGGTAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
*
28891321 CATAAGGGCAAAATAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
28891348 CATAAGGGCAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
* *
28891375 CATATGGGCAAAACATTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
*
28891402 CATAAGGGAAAAACAGTCATTTTACCT
1 CATAAGGGCAAAACAGTCATTTTACCT
*
28891429 CATAAGGGCAAAACAATCATTTTA
1 CATAAGGGCAAAACAGTCATTTTA
28891453 TCGATTAAGG
Statistics
Matches: 122, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 122 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (27 bp):
CATAAGGGCAAAACAGTCATTTTACCT
Found at i:28892765 original size:27 final size:27
Alignment explanation
Indices: 28892735--28892793 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
28892725 CTCGATTTAC
* * *
28892735 AAAATTACAGAAATACCCTTGTAAGGT
1 AAAATTACACAAATACCCCTGGAAGGT
* *
28892762 AAAATTACCCAAATACCCCTGGAGGGT
1 AAAATTACACAAATACCCCTGGAAGGT
28892789 AAAAT
1 AAAAT
28892794 GACTATTTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.19, G:0.15, T:0.22
Consensus pattern (27 bp):
AAAATTACACAAATACCCCTGGAAGGT
Found at i:28893455 original size:27 final size:26
Alignment explanation
Indices: 28893411--28893462 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
28893401 CTCGCTGCAA
*
28893411 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
28893438 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
28893463 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:28893530 original size:26 final size:27
Alignment explanation
Indices: 28893501--28893560 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
28893491 CCACATATAT
*
28893501 ATATCTGT-TCTGGTGGCCTAGACACA
1 ATATCTGTATCTGGTGACCTAGACACA
* * *
28893527 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGACACA
28893554 ATATCTG
1 ATATCTG
28893561 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGACACA
Found at i:28899107 original size:27 final size:27
Alignment explanation
Indices: 28899074--28899143 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
28899064 CCAAGTGGAT
28899074 AAGTTGTAGAATTACCAAAATACCC-C
1 AAGTTGTAGAATTACCAAAATACCCTC
* * *
28899100 TAGTTTGTAAAATTACCAAAGTACCCTC
1 AAG-TTGTAGAATTACCAAAATACCCTC
*
28899128 AAGTTATAGAATTACC
1 AAGTTGTAGAATTACC
28899144 GTTTTACCCT
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.06
27 31 0.86
28 3 0.08
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
AAGTTGTAGAATTACCAAAATACCCTC
Found at i:28899985 original size:33 final size:32
Alignment explanation
Indices: 28899936--28899999 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
28899926 CTCGCTGCAA
* *
28899936 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
28899969 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
28900000 GTGACTTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:28900013 original size:27 final size:26
Alignment explanation
Indices: 28899961--28900020 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
28899951 ACATATATAT
*
28899961 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
28899987 ATATCTGTATCTGGTGACTTTGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
28900014 ATATCTG
1 ATATCTG
28900021 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:28903272 original size:49 final size:49
Alignment explanation
Indices: 28903216--28903443 Score: 267
Period size: 49 Copynumber: 4.6 Consensus size: 49
28903206 CTGGTATGCA
* **
28903216 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
* * **
28903265 TAGTAGCCTGCACTTACTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGATACACG
* * ** * * * *
28903315 TAATAGCCTGCACTTAGTACTACACACGTGATAGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGATACACG
* * *
28903366 TAGTAGCCTGCACTTAGTACTACACATGCGACCAGTTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
28903415 TAGTAGCCTGCACTTAGTACTACACACGC
1 TAGTAGCCTGCACTTAGTACTACACACGC
28903444 AACCTCACAA
Statistics
Matches: 149, Mismatches: 27, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 69 0.46
50 44 0.30
51 36 0.24
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
Found at i:28905027 original size:49 final size:50
Alignment explanation
Indices: 28904958--28905103 Score: 168
Period size: 49 Copynumber: 2.9 Consensus size: 50
28904948 TAGCCAAAGC
* * *
28904958 TATCTGGTACGCATAATAGCCTGCACTTAGTACTACACATGTGACCAA-T
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGT
* * *
28905007 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAAGT
* * * * * *
28905058 TATCGGGTACTCATAGTAGCCTGCAGTTAGTTCTACTCATGCGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
28905104 TCACAATAGA
Statistics
Matches: 80, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
49 39 0.49
50 4 0.05
51 37 0.46
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (50 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAGT
Found at i:28907852 original size:24 final size:24
Alignment explanation
Indices: 28907820--28907930 Score: 143
Period size: 24 Copynumber: 4.6 Consensus size: 24
28907810 AATCTCAAAT
*
28907820 GCACTATGTGTGCAATTTACTATG
1 GCACTATGTGTGCAATTTACTATA
*
28907844 GCACTATGTGTGCGATTTACTATA
1 GCACTATGTGTGCAATTTACTATA
* *
28907868 GCACTATGTGTGCGATTTACTATG
1 GCACTATGTGTGCAATTTACTATA
** *
28907892 GCACTATGTGTGCGAACATAATA-A
1 GCACTATGTGTGC-AATTTACTATA
28907916 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
28907931 CGTTTGGTTG
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
23 2 0.03
24 71 0.91
25 5 0.06
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (24 bp):
GCACTATGTGTGCAATTTACTATA
Found at i:28907872 original size:48 final size:48
Alignment explanation
Indices: 28907820--28907930 Score: 170
Period size: 48 Copynumber: 2.3 Consensus size: 48
28907810 AATCTCAAAT
** *
28907820 GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCG-ATTTACTATA
1 GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCGAACATAATA-A
*
28907868 GCACTATGTGTGCGATTTACTATGGCACTATGTGTGCGAACATAATAA
1 GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCGAACATAATAA
28907916 GCACTATGTGTGCAA
1 GCACTATGTGTGCAA
28907931 CGTTTGGTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
48 52 0.91
49 5 0.09
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (48 bp):
GCACTATGTGTGCAATTTACTATGGCACTATGTGTGCGAACATAATAA
Found at i:28910284 original size:16 final size:15
Alignment explanation
Indices: 28910258--28910301 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
28910248 TATGAAACAG
28910258 AGAAA-CCAAGAATAA
1 AGAAATCCAAG-ATAA
28910273 AGAAATCCAAGATAA
1 AGAAATCCAAGATAA
*
28910288 AGAAATCCATGATA
1 AGAAATCCAAGATA
28910302 CGAGAATCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 22 0.81
16 5 0.19
ACGTcount: A:0.59, C:0.14, G:0.14, T:0.14
Consensus pattern (15 bp):
AGAAATCCAAGATAA
Found at i:28913152 original size:50 final size:48
Alignment explanation
Indices: 28913024--28913199 Score: 217
Period size: 50 Copynumber: 3.5 Consensus size: 48
28913014 CTGGTATGCA
* * *
28913024 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAT-CAGTACACG
**
28913073 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCAGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCAG-TACACG
* * * *
28913123 TAGTAACCTGCACTTAGTACTACATACGTGATCGAAGTTATCAGGTACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCA-GTACACG
28913174 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
28913200 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
49 34 0.31
50 40 0.37
51 34 0.31
52 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGTACACG
Found at i:28913207 original size:101 final size:99
Alignment explanation
Indices: 28913024--28913207 Score: 253
Period size: 101 Copynumber: 1.8 Consensus size: 99
28913014 CTGGTATGCA
* * **
28913024 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACATGTAGTAGCCTGCACTTA
1 TAGTAACCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
*
28913089 GTACTACACACGTGACCTAACCATCAGATACACG
66 GTACTACACACGCGACCTAACCATCAGATACACG
* * *
28913123 TAGTAACCTGCACTTAGTACTACATACGTGATCGAAGTTAT-CAGGTACACATAGTAGCCTGCAC
1 TAGTAACCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCA-GTACACATAGTAGCCTGCAC
*
28913187 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
28913208 CACAATAGAT
Statistics
Matches: 73, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
99 27 0.37
100 5 0.07
101 41 0.56
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (99 bp):
TAGTAACCTGCACTTAGTACTACACACGCGACCAATTATCCAGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCAGATACACG
Found at i:28917086 original size:29 final size:28
Alignment explanation
Indices: 28917029--28917114 Score: 100
Period size: 28 Copynumber: 3.0 Consensus size: 28
28917019 GTGAGCATGA
* * *
28917029 ATATGAATGTGACTGGGCCTAACGAGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
28917057 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* * *
28917086 ATATGAATATGATTGGACTTAATGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
28917114 A
1 A
28917115 CATACAGGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
28 26 0.53
29 23 0.47
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:28919727 original size:18 final size:19
Alignment explanation
Indices: 28919692--28919731 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
28919682 CCAGTTATGG
28919692 ACCGAGGTGGTGTACAGCC
1 ACCGAGGTGGTGTACAGCC
28919711 ACCGAGG-GGTGGT-CAGCC
1 ACCGAGGTGGT-GTACAGCC
28919729 ACC
1 ACC
28919732 ATCGAGAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.20, C:0.30, G:0.38, T:0.12
Consensus pattern (19 bp):
ACCGAGGTGGTGTACAGCC
Found at i:28921814 original size:40 final size:40
Alignment explanation
Indices: 28921759--28921939 Score: 258
Period size: 40 Copynumber: 4.5 Consensus size: 40
28921749 CATTTGAATG
28921759 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
28921799 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
28921839 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * * *
28921879 ATGTCTGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
*
28921919 ATAT-CTGGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
28921940 AAACTTGGGT
Statistics
Matches: 127, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
38 1 0.01
39 12 0.09
40 114 0.90
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:28929753 original size:40 final size:40
Alignment explanation
Indices: 28929698--28929917 Score: 338
Period size: 40 Copynumber: 5.5 Consensus size: 40
28929688 CATTTGAATG
28929698 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
28929738 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
28929778 ATATCCGGGCTAAGACCC-AAGGCATTTGTGCGAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* *
28929817 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
* * * * * *
28929857 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
28929897 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
28929918 AAACTTGGGT
Statistics
Matches: 166, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 51 0.31
40 114 0.69
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTT
Found at i:28929816 original size:79 final size:80
Alignment explanation
Indices: 28929698--28929917 Score: 338
Period size: 79 Copynumber: 2.8 Consensus size: 80
28929688 CATTTGAATG
28929698 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
* *
28929763 TTTGTGCGAGTTGTT
66 TTTGTGCAAGTTGCT
28929778 ATATCCGGGCTAAGACCC-AAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
28929842 TTTGTGCAAGTTGCT
66 TTTGTGCAAGTTGCT
* * * * * *
28929857 ATGTCCGGGTTAAGACCCGAAGGCAATTGGGCGTGTGGTTATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGA-CCCGAAG
28929918 AAACTTGGGT
Statistics
Matches: 130, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
78 1 0.01
79 88 0.68
80 41 0.32
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.26
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCAAGTTGCT
Found at i:28932119 original size:24 final size:24
Alignment explanation
Indices: 28932090--28932147 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
28932080 GAGCTAACTG
28932090 TTCAGCTCAATAAAACTTACTGTT
1 TTCAGCTCAATAAAACTTACTGTT
* *
28932114 TTCAGCTCAATAGAGCTTACTGTT
1 TTCAGCTCAATAAAACTTACTGTT
28932138 TATCAGCTCA
1 T-TCAGCTCA
28932148 GGAGGAGCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 23 0.74
25 8 0.26
ACGTcount: A:0.29, C:0.22, G:0.12, T:0.36
Consensus pattern (24 bp):
TTCAGCTCAATAAAACTTACTGTT
Found at i:28935713 original size:17 final size:17
Alignment explanation
Indices: 28935693--28935727 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
28935683 AATAGAATAA
28935693 TTTAAAAAAATTAAAAT
1 TTTAAAAAAATTAAAAT
**
28935710 TTTAAAAACTTTAAAAT
1 TTTAAAAAAATTAAAAT
28935727 T
1 T
28935728 AACTTAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTAAAAAAATTAAAAT
Found at i:28939185 original size:81 final size:82
Alignment explanation
Indices: 28939100--28939255 Score: 183
Period size: 81 Copynumber: 1.9 Consensus size: 82
28939090 TTATTTTTTT
* ** * * * *
28939100 AAAAT-AGAAAATTTTTTATTTAATTTTTTATAATTTATAAA-ATTTTAAATTA-ATAATAATAA
1 AAAATGAGAAAATTTTAT-TTTAATCATCTAAAATTTATAAAGA-TATAAATTATAAAATAATAA
28939162 AATTATATTTTAATCCTTA
64 AATTATATTTTAATCCTTA
* *
28939181 AAAATGATAAAATTTTATTTTAATCATCTAAAATTTATAAAGATATAAATTATTAAAATAATTAA
1 AAAATGAGAAAATTTTATTTTAATCATCTAAAATTTATAAAGATATAAATTA-TAAAATAATAAA
28939246 ATTATATTTT
65 ATTATATTTT
28939256 TACTATTGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
81 32 0.52
82 11 0.18
83 19 0.31
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.47
Consensus pattern (82 bp):
AAAATGAGAAAATTTTATTTTAATCATCTAAAATTTATAAAGATATAAATTATAAAATAATAAAA
TTATATTTTAATCCTTA
Found at i:28939221 original size:30 final size:29
Alignment explanation
Indices: 28939141--28939213 Score: 87
Period size: 29 Copynumber: 2.6 Consensus size: 29
28939131 AATTTATAAA
* *
28939141 ATTTTAA--ATTAATAATAATAAAATTAT
1 ATTTTAATCATTAAAAATGATAAAATTAT
* *
28939168 ATTTTAATCCTTAAAAATGATAAAATTTT
1 ATTTTAATCATTAAAAATGATAAAATTAT
28939197 ATTTTAATCATCTAAAA
1 ATTTTAATCAT-TAAAA
28939214 TTTATAAAGA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
27 7 0.18
29 26 0.68
30 5 0.13
ACGTcount: A:0.49, C:0.05, G:0.01, T:0.44
Consensus pattern (29 bp):
ATTTTAATCATTAAAAATGATAAAATTAT
Found at i:28944575 original size:41 final size:41
Alignment explanation
Indices: 28944530--28944647 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
28944520 TGAAAGATAA
28944530 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
28944571 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28944601 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28944642 ATGTAG
1 ATGTAG
28944648 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:28944586 original size:71 final size:71
Alignment explanation
Indices: 28944498--28944661 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
28944488 GAGATGTATC
28944498 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28944563 AGGACA
66 AGGACA
28944569 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28944634 AGGACA
66 AGGACA
28944640 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
28944662 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:28952145 original size:41 final size:41
Alignment explanation
Indices: 28952100--28952217 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
28952090 TGAAAGATAA
28952100 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
28952141 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28952171 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28952212 ATGTAG
1 ATGTAG
28952218 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:28952156 original size:71 final size:71
Alignment explanation
Indices: 28952068--28952231 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
28952058 GAGATGTATC
28952068 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28952133 AGGACA
66 AGGACA
28952139 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28952204 AGGACA
66 AGGACA
28952210 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
28952232 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:28959246 original size:21 final size:20
Alignment explanation
Indices: 28959208--28959264 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
28959198 TGGTATTCCA
* *
28959208 TCACATTTTTTTGGTACATGTT
1 TCACATTTTTTT-ATACAT-TC
28959230 TCACATTTTTTTATACATTC
1 TCACATTTTTTTATACATTC
* *
28959250 TCAAAATTTTTTATA
1 TCACATTTTTTTATA
28959265 ATCCCTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 14 0.45
21 5 0.16
22 12 0.39
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.54
Consensus pattern (20 bp):
TCACATTTTTTTATACATTC
Found at i:28961422 original size:28 final size:28
Alignment explanation
Indices: 28961382--28961437 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
28961372 TCTATCAGAA
*
28961382 ATAATCGAAACAGGAAACTCATGCAGTC
1 ATAATCGAAACAGGAAACCCATGCAGTC
*
28961410 ATAATCGAAACAGGAACCCCATGCAGTC
1 ATAATCGAAACAGGAAACCCATGCAGTC
28961438 TTACTATCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.41, C:0.25, G:0.18, T:0.16
Consensus pattern (28 bp):
ATAATCGAAACAGGAAACCCATGCAGTC
Found at i:28975230 original size:53 final size:54
Alignment explanation
Indices: 28975049--28975255 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
28975039 ATTAGGGTTT
* * * * * *
28975049 AAGGATACCAAGAAAAACCATGCCAAGGCATGGCATTGGTAAGTTCGAAAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCGATAAGGC
* * * * * * * * *
28975103 AAGGAAATCATGTAAGACCTTGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTCGATAAGGC
* * * *
28975158 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCGATAAGGC
* *
28975211 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
28975256 TAAAACGGAA
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 46 0.38
54 34 0.28
55 41 0.34
ACGTcount: A:0.38, C:0.18, G:0.24, T:0.19
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCGATAAGGC
Found at i:28976670 original size:50 final size:50
Alignment explanation
Indices: 28976535--28976901 Score: 244
Period size: 50 Copynumber: 7.5 Consensus size: 50
28976525 GGGGTGTTAC
* * * * *
28976535 AGACCATGTCTGGGACATGGCATCG-GCT-ATGAGA-TATA-TCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTCAGTGTA
* *
28976581 AGACCATGTCTGGGACATGGCATCG-GCAC-AGATGGACGAGAGTCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGACCTCAAGAT--ACGAGAGTCAGTGTA
* * *
28976631 AGACCATGTCTAGGACATGGCATCAACCTCAACATACGAGAG-CTAGTGTA
1 AGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTC-AGTGTA
* ** * * *
28976681 ATACCATGTCTGGGACATGGTGTC-AGCCTC--GATACATGATAGTCAATATA
1 AGACCATGTCTGGGACATGGCATCGA-CCTCAAGATAC--GAGAGTCAGTGTA
* * ** * * *
28976731 AGAACATGTCTAGGACATGGCATCGA-CT-TTGATATGTGAG-CTAGAGTA
1 AGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTC-AGTGTA
* * * * * * *
28976779 AGACCTTGTCTGGGACATGGCGTCGGCCTCAATACATGATAGTCAGTGTA
1 AGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTCAGTGTA
** * *
28976829 AGACCATGTCTGGGACATGGCATCGA-CT-TTGATACGTGA-ACTAGTGTA
1 AGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTC-AGTGTA
28976877 AGACCATGTCTGGGACATGGCATCG
1 AGACCATGTCTGGGACATGGCATCG
28976902 GCTTCCTACC
Statistics
Matches: 249, Mismatches: 52, Indels: 38
0.73 0.15 0.11
Matches are distributed among these distances:
46 29 0.12
47 2 0.01
48 67 0.27
49 10 0.04
50 133 0.53
51 5 0.02
52 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
AGACCATGTCTGGGACATGGCATCGACCTCAAGATACGAGAGTCAGTGTA
Found at i:28976814 original size:98 final size:98
Alignment explanation
Indices: 28976535--28976903 Score: 411
Period size: 98 Copynumber: 3.8 Consensus size: 98
28976525 GGGGTGTTAC
* * * ** *
28976535 AGACCATGTCTGGGACATGGCATCGGCTATGAGATAT-ATC-AGTGTAAGACCATGTCTGGGACA
1 AGACCATGTCTAGGACATGGCATCGACTATGATACGTGAGCTAGTGTAAGACCATGTCTGGGACA
* ** * *
28976598 TGGCATCGG-CACAGATGGACGAGAGTCAGTGTA
66 TGGCATCGGCCTCA-ATACATGATAGTCAGTGTA
* ** * *
28976631 AGACCATGTCTAGGACATGGCATCAACCTCAACATACGAGAGCTAGTGTAATACCATGTCTGGGA
1 AGACCATGTCTAGGACATGGCATCGA-CT-ATGATACGTGAGCTAGTGTAAGACCATGTCTGGGA
** * * * *
28976696 CATGGTGTCAGCCTCGATACATGATAGTCAATATA
64 CATGGCATCGGCCTCAATACATGATAGTCAGTGTA
* * * * *
28976731 AGAACATGTCTAGGACATGGCATCGACTTTGATATGTGAGCTAGAGTAAGACCTTGTCTGGGACA
1 AGACCATGTCTAGGACATGGCATCGACTATGATACGTGAGCTAGTGTAAGACCATGTCTGGGACA
*
28976796 TGGCGTCGGCCTCAATACATGATAGTCAGTGTA
66 TGGCATCGGCCTCAATACATGATAGTCAGTGTA
* * *
28976829 AGACCATGTCTGGGACATGGCATCGACTTTGATACGTGAACTAGTGTAAGACCATGTCTGGGACA
1 AGACCATGTCTAGGACATGGCATCGACTATGATACGTGAGCTAGTGTAAGACCATGTCTGGGACA
28976894 TGGCATCGGC
66 TGGCATCGGC
28976904 TTCCTACCCT
Statistics
Matches: 224, Mismatches: 44, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
96 23 0.10
97 2 0.01
98 128 0.57
99 4 0.02
100 65 0.29
101 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.24
Consensus pattern (98 bp):
AGACCATGTCTAGGACATGGCATCGACTATGATACGTGAGCTAGTGTAAGACCATGTCTGGGACA
TGGCATCGGCCTCAATACATGATAGTCAGTGTA
Found at i:28981806 original size:49 final size:49
Alignment explanation
Indices: 28981751--28982179 Score: 786
Period size: 49 Copynumber: 8.8 Consensus size: 49
28981741 TACTAAAATT
* * *
28981751 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
*
28981800 TGTGAAAGTGTATGTATATGTGATGAGGCCGAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
*
28981849 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCTGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
*
28981898 TGTGAAAGTGTATGTATATGTGATGTGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
28981947 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
28981996 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
28982045 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
28982094 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
* *
28982143 TGTGAAAGTGTATGTATATGTGATAAGGTCTAATGGC
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGC
28982180 TAATGTAAAA
Statistics
Matches: 369, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 369 1.00
ACGTcount: A:0.27, C:0.08, G:0.34, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
Found at i:28983853 original size:40 final size:40
Alignment explanation
Indices: 28983771--28983855 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
28983761 AGAATTGAGA
** * * *
28983771 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
* *
28983811 AGTGATGTATCCGGGCTAGGCCCCGAAGAGCAATCATACT
1 AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
28983851 AGTGA
1 AGTGA
28983856 CGTGTATTCG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGCCCCGAAGAGCAATCATACT
Found at i:28984118 original size:29 final size:29
Alignment explanation
Indices: 28984086--28984188 Score: 179
Period size: 29 Copynumber: 3.6 Consensus size: 29
28984076 CGTTAACCGA
28984086 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
28984115 GCACTATGTGTGCGAGATCAGTAATCGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
* *
28984144 ACACTATGTGTGCGAGATCAGTAATTGAG
1 GCACTATGTGTGCGAGATCAGTAATCGAG
*
28984173 GCACTGTGTGTGCGAG
1 GCACTATGTGTGCGAG
28984189 TTTTTCAACA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (29 bp):
GCACTATGTGTGCGAGATCAGTAATCGAG
Found at i:28984188 original size:58 final size:59
Alignment explanation
Indices: 28984054--28984188 Score: 195
Period size: 58 Copynumber: 2.3 Consensus size: 59
28984044 CGAATGATTA
* *
28984054 GAGGCACTGTGTGTGC-AAATTCCGTTAACCGAGCACTATGTGTGCGAGATCAGTAATC
1 GAGGCACTGTGTGTGCGAGATTCAGTTAACCGAGCACTATGTGTGCGAGATCAGTAATC
* * *
28984112 GAGGCACTATGTGTGCGAGA-TCAG-TAATCGAGACACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAGATTCAGTTAACCGAG-CACTATGTGTGCGAGATCAGTAATC
28984170 GAGGCACTGTGTGTGCGAG
1 GAGGCACTGTGTGTGCGAG
28984189 TTTTTCAACA
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
57 7 0.10
58 60 0.87
59 2 0.03
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (59 bp):
GAGGCACTGTGTGTGCGAGATTCAGTTAACCGAGCACTATGTGTGCGAGATCAGTAATC
Found at i:28986078 original size:49 final size:49
Alignment explanation
Indices: 28986023--28986304 Score: 510
Period size: 49 Copynumber: 5.8 Consensus size: 49
28986013 TACTAAAATT
* * *
28986023 TGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
28986072 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
*
28986121 TGTGAAAGTGTATGTATATGTGATGTGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
28986170 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
*
28986219 TGTGAAAGTGTATGTATATGTGATGAGACCTAATGGCCGATGTGGTGAA
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
*
28986268 TGTGAAAGTGTATGTATATGTGATAAGGCCTAATGGC
1 TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGC
28986305 TAATGTAAAA
Statistics
Matches: 225, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 225 1.00
ACGTcount: A:0.28, C:0.08, G:0.33, T:0.31
Consensus pattern (49 bp):
TGTGAAAGTGTATGTATATGTGATGAGGCCTAATGGCCGATGTGGTGAA
Found at i:28996745 original size:41 final size:41
Alignment explanation
Indices: 28996700--28996817 Score: 98
Period size: 41 Copynumber: 3.1 Consensus size: 41
28996690 TGAAAGATAA
28996700 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
* * * * *
28996741 ATGTAGAC-AAG-AG-A-GC-T-A---C--GTGAAAGATA-A
1 ATGTAG-CTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28996771 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
1 ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
28996812 ATGTAG
1 ATGTAG
28996818 ACAAGAGAGC
Statistics
Matches: 54, Mismatches: 10, Indels: 26
0.60 0.11 0.29
Matches are distributed among these distances:
29 1 0.02
30 8 0.15
31 9 0.17
32 1 0.02
33 3 0.06
34 1 0.02
35 1 0.02
36 1 0.02
37 1 0.02
38 3 0.06
39 1 0.02
40 9 0.17
41 14 0.26
42 1 0.02
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (41 bp):
ATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACC
Found at i:28996756 original size:71 final size:71
Alignment explanation
Indices: 28996668--28996831 Score: 328
Period size: 71 Copynumber: 2.3 Consensus size: 71
28996658 GAGATGTATC
28996668 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28996733 AGGACA
66 AGGACA
28996739 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
1 CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
28996804 AGGACA
66 AGGACA
28996810 CCATGTAGACAAGAGAGCTACG
1 CCATGTAGACAAGAGAGCTACG
28996832 AGACAAATCG
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (71 bp):
CCATGTAGACAAGAGAGCTACGTGAAAGATAAATGTAGCTAGGTCGCATGCGTGATTCCAAGTGA
AGGACA
Found at i:29013225 original size:21 final size:21
Alignment explanation
Indices: 29013199--29013253 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
29013189 TTAAGGTCAT
29013199 AAATAATTAATTAAAGTATTA
1 AAATAATTAATTAAAGTATTA
29013220 AAATAATATAATT-AAGTATTA
1 AAATAAT-TAATTAAAGTATTA
**
29013241 TTAT-ATTAATTAA
1 AAATAATTAATTAA
29013254 TCTAAAATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 5 0.17
20 3 0.10
21 17 0.57
22 5 0.17
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (21 bp):
AAATAATTAATTAAAGTATTA
Found at i:29014886 original size:20 final size:21
Alignment explanation
Indices: 29014840--29014887 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
29014830 TCCCTTATAA
29014840 CTCAAAAATTACAAATTTGAC
1 CTCAAAAATTACAAATTTGAC
29014861 CTCAAAAATTACAAATTTGAC
1 CTCAAAAATTACAAATTTGAC
29014882 C-CAAAA
1 CTCAAAA
29014888 TTTTATATCT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.19
21 22 0.81
ACGTcount: A:0.50, C:0.21, G:0.04, T:0.25
Consensus pattern (21 bp):
CTCAAAAATTACAAATTTGAC
Found at i:29014913 original size:79 final size:79
Alignment explanation
Indices: 29014782--29014940 Score: 291
Period size: 79 Copynumber: 2.0 Consensus size: 79
29014772 TCCCCTAAAA
*
29014782 CTCAAAAATTACAATTTTGACCCAAAATTTTATATCTATAGTCGTGTGTCCCTTATAACTCAAAA
1 CTCAAAAATTACAAATTTGACCCAAAATTTTATATCTATAGTCGTGTGTCCCTTATAACTCAAAA
29014847 ATTACAAATTTGAC
66 ATTACAAATTTGAC
*
29014861 CTCAAAAATTACAAATTTGACCCAAAATTTTATATCTATGGTCGTGTGTCCCTTATAACTCAAAA
1 CTCAAAAATTACAAATTTGACCCAAAATTTTATATCTATAGTCGTGTGTCCCTTATAACTCAAAA
*
29014926 ATTACAATTTTGAC
66 ATTACAAATTTGAC
29014940 C
1 C
29014941 CAATATTTTA
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 77 1.00
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.35
Consensus pattern (79 bp):
CTCAAAAATTACAAATTTGACCCAAAATTTTATATCTATAGTCGTGTGTCCCTTATAACTCAAAA
ATTACAAATTTGAC
Found at i:29016531 original size:23 final size:24
Alignment explanation
Indices: 29016496--29016543 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
29016486 TATTTTAAGA
* *
29016496 TTATATTTCTATATTTG-TTTAAT
1 TTATATTTATATAATTGTTTTAAT
*
29016519 TTATTTTTATATAATTGTTTTAAT
1 TTATATTTATATAATTGTTTTAAT
29016543 T
1 T
29016544 CAATCAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (24 bp):
TTATATTTATATAATTGTTTTAAT
Found at i:29029006 original size:46 final size:46
Alignment explanation
Indices: 29028949--29029058 Score: 114
Period size: 46 Copynumber: 2.4 Consensus size: 46
29028939 TTAAATATAT
* * *
29028949 ATTTTATATTTTTAAAAATGTAAAAATATATTTTTAA-ATTTTAAAA
1 ATTTTAAATTTTTAAAAATAT-AAAATATACTTTTAATATTTTAAAA
* * * * **
29028995 ATTTTAAATTTTTTAAAATATATACTATACTTTTAATTTTTTTTAA
1 ATTTTAAATTTTTAAAAATATAAAATATACTTTTAATATTTTAAAA
29029041 ATTTTAAATTTTATAAAA
1 ATTTTAAATTTT-TAAAA
29029059 TTAATTAATT
Statistics
Matches: 52, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
45 12 0.23
46 36 0.69
47 4 0.08
ACGTcount: A:0.44, C:0.02, G:0.01, T:0.54
Consensus pattern (46 bp):
ATTTTAAATTTTTAAAAATATAAAATATACTTTTAATATTTTAAAA
Found at i:29029559 original size:43 final size:41
Alignment explanation
Indices: 29029496--29029657 Score: 189
Period size: 43 Copynumber: 3.8 Consensus size: 41
29029486 ATTTATTTGA
* *
29029496 AAAAATGCCGCTATAGAACATGACCTTTAGTGGCGTTTCTCAC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGTTT-T-AC
* * * *
29029539 AAAAACGCTGCTATAAAACATGACCTTCAGCGGCACTTTTAC
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGGC-GTTTTAC
29029581 AACAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTACC
1 AA-AAACGCCGCTATAGAACATGACCTTTAGCGGCG-TTTTA-C
* * *
29029625 ATAAACGCCGCTACAGAACATGCCCTTTAGCGG
1 AAAAACGCCGCTATAGAACATGACCTTTAGCGG
29029658 AACTTCCAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 8
0.83 0.11 0.07
Matches are distributed among these distances:
42 4 0.04
43 93 0.91
44 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (41 bp):
AAAAACGCCGCTATAGAACATGACCTTTAGCGGCGTTTTAC
Found at i:29029631 original size:86 final size:87
Alignment explanation
Indices: 29029497--29029706 Score: 239
Period size: 86 Copynumber: 2.4 Consensus size: 87
29029487 TTTATTTGAA
* * * *
29029497 AAAATGCCGCTATAGAACATGACCTTTAGTGGCG-TTTCTCACAAAAACGCTGCTATAAAACATG
1 AAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTCACAAAAACGCCGCTACAAAACATG
* **
29029561 ACCTTCAGCGGCACTTTTACAAC
66 ACCTTCAGCGGAACTTCCA-AAC
* *
29029584 -AAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTT-T-ACCATAAACGCCGCTACAGAACAT
1 AAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTCA-CAAAAACGCCGCTACAAAACAT
* *
29029646 GCCCTTTAGCGGAACTTCCAAAC
65 GACCTTCAGCGGAACTTCCAAAC
* * * *
29029669 AAAACACCGCTAAAGAACAAGACTTTTAGCGGCGCTTT
1 AAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTT
29029707 AGTGAAAAAC
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
85 4 0.04
86 98 0.93
87 3 0.03
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (87 bp):
AAAACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTCTCACAAAAACGCCGCTACAAAACATG
ACCTTCAGCGGAACTTCCAAAC
Found at i:29032917 original size:19 final size:18
Alignment explanation
Indices: 29032895--29032941 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 18
29032885 CAAAAATAGA
*
29032895 AAATACAAAGCCATCCAG
1 AAATACAAAGCCAACCAG
*
29032913 CAAATATAAAGCCAACCAG
1 -AAATACAAAGCCAACCAG
29032932 AAATAGCAAA
1 AAATA-CAAA
29032942 TCTAAATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.55, C:0.23, G:0.11, T:0.11
Consensus pattern (18 bp):
AAATACAAAGCCAACCAG
Found at i:29034056 original size:14 final size:14
Alignment explanation
Indices: 29034034--29034088 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
29034024 CAAATTTTAC
29034034 CCTAAACCCTAAAT
1 CCTAAACCCTAAAT
*
29034048 CCTAGACCCTAGAA-
1 CCTAAACCCTA-AAT
* *
29034062 CATAACCCCTAAAT
1 CCTAAACCCTAAAT
*
29034076 CTTAAACCCTAAA
1 CCTAAACCCTAAA
29034089 ACCTTATATT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
13 2 0.06
14 29 0.88
15 2 0.06
ACGTcount: A:0.42, C:0.35, G:0.04, T:0.20
Consensus pattern (14 bp):
CCTAAACCCTAAAT
Found at i:29034262 original size:22 final size:23
Alignment explanation
Indices: 29034232--29034274 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
29034222 TTATTAAAAT
29034232 CCCTAACCCTTAAA-CCCTAATA
1 CCCTAACCCTTAAATCCCTAATA
*
29034254 CCCTGACCCTTAAATCCCTAA
1 CCCTAACCCTTAAATCCCTAA
29034275 ACTCTAAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.33, C:0.42, G:0.02, T:0.23
Consensus pattern (23 bp):
CCCTAACCCTTAAATCCCTAATA
Found at i:29034352 original size:14 final size:14
Alignment explanation
Indices: 29034232--29034352 Score: 50
Period size: 14 Copynumber: 8.5 Consensus size: 14
29034222 TTATTAAAAT
29034232 CCCT-AACCCTTAAA
1 CCCTAAACCC-TAAA
*
29034246 CCCTAATACCCT-GA
1 CCCTAA-ACCCTAAA
29034260 CCCTTAAATCCCTAAA
1 CCC-TAAA-CCCTAAA
* *
29034276 CTCTAAACCATAAA
1 CCCTAAACCCTAAA
* **
29034290 CCTTAAGGCCTAAA
1 CCCTAAACCCTAAA
* * * *
29034304 GCTTAGACTCTAGAA
1 CCCTAAACCCTA-AA
* *
29034319 CAC-AATCCCTAAA
1 CCCTAAACCCTAAA
* *
29034332 TCATAAACCCTAAA
1 CCCTAAACCCTAAA
29034346 CCCTAAA
1 CCCTAAA
29034353 ACCATATATC
Statistics
Matches: 74, Mismatches: 26, Indels: 14
0.65 0.23 0.12
Matches are distributed among these distances:
13 2 0.03
14 50 0.68
15 15 0.20
16 7 0.09
ACGTcount: A:0.40, C:0.34, G:0.05, T:0.21
Consensus pattern (14 bp):
CCCTAAACCCTAAA
Found at i:29034541 original size:22 final size:23
Alignment explanation
Indices: 29034494--29034542 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 23
29034484 ACTTTTATTA
29034494 AAAT-CCCTAACCCTTAAACCAT
1 AAATACCCTAACCCTTAAACCAT
*
29034516 -AATACCCTAA-CCTTAAACCCT
1 AAATACCCTAACCCTTAAACCAT
29034537 AAATAC
1 AAATAC
29034543 TAAGGCTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 13 0.54
22 11 0.46
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (23 bp):
AAATACCCTAACCCTTAAACCAT
Found at i:29034603 original size:7 final size:7
Alignment explanation
Indices: 29034580--29034710 Score: 63
Period size: 7 Copynumber: 18.4 Consensus size: 7
29034570 TTTAAACCAC
*
29034580 AAACCCT
1 AAACCTT
*
29034587 AAACCAT
1 AAACCTT
29034594 AAACCTT
1 AAACCTT
*
29034601 AAAACATT
1 -AAACCTT
29034609 AAA-CTCT
1 AAACCT-T
29034616 AAACC-T
1 AAACCTT
*
29034622 AATATAC-T
1 AA-A-CCTT
*
29034630 AAACATT
1 AAACCTT
*
29034637 AAACCAT
1 AAACCTT
*
29034644 AAACATT
1 AAACCTT
*
29034651 AAAACCAT
1 -AAACCTT
*
29034659 AAACCAT
1 AAACCTT
*
29034666 AGACCTT
1 AAACCTT
29034673 AAACCTT
1 AAACCTT
*
29034680 AAACATT
1 AAACCTT
*
29034687 AAATCTT
1 AAACCTT
29034694 AAAACC-T
1 -AAACCTT
*
29034701 AAACCCT
1 AAACCTT
29034708 AAA
1 AAA
29034711 ATAAAATTAT
Statistics
Matches: 95, Mismatches: 20, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
6 9 0.09
7 66 0.69
8 20 0.21
ACGTcount: A:0.52, C:0.24, G:0.01, T:0.23
Consensus pattern (7 bp):
AAACCTT
Found at i:29034689 original size:14 final size:14
Alignment explanation
Indices: 29034629--29034662 Score: 59
Period size: 15 Copynumber: 2.4 Consensus size: 14
29034619 CCTAATATAC
29034629 TAAACATTAAACCA
1 TAAACATTAAACCA
29034643 TAAACATTAAAACCA
1 TAAACATT-AAACCA
29034658 TAAAC
1 TAAAC
29034663 CATAGACCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (14 bp):
TAAACATTAAACCA
Found at i:29034793 original size:41 final size:41
Alignment explanation
Indices: 29034733--29034826 Score: 127
Period size: 41 Copynumber: 2.3 Consensus size: 41
29034723 TTTTTTACGG
*
29034733 CTTGA-CTTTTAGCAACGTTTTTATCACAAACGCCGCTACTA
1 CTTGACCTTTT-GCAACGTTTTTATCACAAACACCGCTACTA
* * *
29034774 CTTGACCTTTTGCAGCGTTTTTATCACAAACATCGCTACTG
1 CTTGACCTTTTGCAACGTTTTTATCACAAACACCGCTACTA
*
29034815 GTTGACCTTTTG
1 CTTGACCTTTTG
29034827 TGTCATTTAG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 42 0.89
42 5 0.11
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.37
Consensus pattern (41 bp):
CTTGACCTTTTGCAACGTTTTTATCACAAACACCGCTACTA
Found at i:29034946 original size:7 final size:7
Alignment explanation
Indices: 29034832--29034948 Score: 67
Period size: 7 Copynumber: 17.0 Consensus size: 7
29034822 TTTTGTGTCA
29034832 TTTAGGG
1 TTTAGGG
*
29034839 TTTAAGG
1 TTTAGGG
**
29034846 TTTACAG
1 TTTAGGG
*
29034853 ATTAGGG
1 TTTAGGG
* *
29034860 TTTATGT
1 TTTAGGG
29034867 TTTA-GG
1 TTTAGGG
*
29034873 TTTAGTG
1 TTTAGGG
* ***
29034880 TATATAT
1 TTTAGGG
29034887 TTTAGGG
1 TTTAGGG
*
29034894 TTTAAGG
1 TTTAGGG
*
29034901 TTTAGAG
1 TTTAGGG
29034908 TTTAGGG
1 TTTAGGG
*
29034915 -TTATGG
1 TTTAGGG
*
29034921 TTTATGG
1 TTTAGGG
* *
29034928 CTTATGG
1 TTTAGGG
29034935 TTTAGGG
1 TTTAGGG
29034942 TTTAGGG
1 TTTAGGG
29034949 ATAAACAGAT
Statistics
Matches: 81, Mismatches: 27, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
6 10 0.12
7 71 0.88
ACGTcount: A:0.21, C:0.02, G:0.31, T:0.47
Consensus pattern (7 bp):
TTTAGGG
Found at i:29035534 original size:41 final size:41
Alignment explanation
Indices: 29035471--29035678 Score: 187
Period size: 41 Copynumber: 5.1 Consensus size: 41
29035461 ATAATACATA
** *
29035471 TTTGC-GGCGTTTGGATAAAAAAACGCCACTATAGCTCAACCT
1 TTTGCAGGCGTTTGGA-CCAAAAACGCCACTATTGCTCAA-CT
*
29035513 TTTGCAGTGC-TTT-GACCAAAAACGCCACTATTGCCCAACT
1 TTTGCAG-GCGTTTGGACCAAAAACGCCACTATTGCTCAACT
* *
29035553 TTT-AACGGCGTTTGGACCTAAAACGCCACTATTGCTCAACT
1 TTTGCA-GGCGTTTGGACCAAAAACGCCACTATTGCTCAACT
* * * * *
29035594 TTTAGCA-GCGTTTGGGCCTAAAAGGCCACTATTTCTCAGCT
1 TTT-GCAGGCGTTTGGACCAAAAACGCCACTATTGCTCAACT
* *
29035635 TTTAGC-GGCGTTTGGTA-GAAAAATGCCACTATTGCTCAACT
1 TTT-GCAGGCGTTTGG-ACCAAAAACGCCACTATTGCTCAACT
29035676 TTT
1 TTT
29035679 TGCGACGTTT
Statistics
Matches: 139, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
39 3 0.02
40 9 0.06
41 113 0.81
42 7 0.05
43 5 0.04
44 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (41 bp):
TTTGCAGGCGTTTGGACCAAAAACGCCACTATTGCTCAACT
Found at i:29035622 original size:82 final size:81
Alignment explanation
Indices: 29035475--29035678 Score: 232
Period size: 82 Copynumber: 2.5 Consensus size: 81
29035465 TACATATTTG
* * *
29035475 CGGCGTTTGGATAAAAAAACGCCACTATAGCTCAACCTTTTGCAGTGCTTTGACCAAAAACGCCA
1 CGGCGTTTGG-TACAAAAACGCCACTATTGCTCAA-CTTTTGCAGCGCTTTGACCAAAAACGCCA
29035540 CTATTGCCCAACTTTTAA
64 CTATTGCCCAACTTTTAA
* * * *
29035558 CGGCGTTTGG-ACCTAAAACGCCACTATTGCTCAACTTTTAGCAGCG-TTTGGGCCTAAAAGGCC
1 CGGCGTTTGGTA-CAAAAACGCCACTATTGCTCAACTTTT-GCAGCGCTTT-GACCAAAAACGCC
* * * *
29035621 ACTATTTCTCAGCTTTTAG
63 ACTATTGCCCAACTTTTAA
* *
29035640 CGGCGTTTGGTAGAAAAATGCCACTATTGCTCAACTTTT
1 CGGCGTTTGGTACAAAAACGCCACTATTGCTCAACTTTT
29035679 TGCGACGTTT
Statistics
Matches: 103, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
81 9 0.09
82 83 0.81
83 11 0.11
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (81 bp):
CGGCGTTTGGTACAAAAACGCCACTATTGCTCAACTTTTGCAGCGCTTTGACCAAAAACGCCACT
ATTGCCCAACTTTTAA
Found at i:29037490 original size:14 final size:14
Alignment explanation
Indices: 29037468--29037497 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
29037458 GTTAAACTAA
29037468 TAATATAATTTAAT
1 TAATATAATTTAAT
*
29037482 TAATCTAATTTAAT
1 TAATATAATTTAAT
29037496 TA
1 TA
29037498 CTATCGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATAATTTAAT
Found at i:29038520 original size:19 final size:18
Alignment explanation
Indices: 29038496--29038580 Score: 75
Period size: 19 Copynumber: 4.4 Consensus size: 18
29038486 ATAAATGTTG
29038496 GAATTTTTATAAATATTTT
1 GAATTTTTA-AAATATTTT
29038515 GAA-TTTTAAAATTTATTTT
1 GAATTTTTAAAA--TATTTT
*
29038534 TAATTTTTGAAAAATATTTT
1 GAATTTTT--AAAATATTTT
*
29038554 AAATATTTTAAAAT-TGTTT
1 GAAT-TTTTAAAATAT-TTT
29038573 GAATTTTT
1 GAATTTTT
29038581 TTTTTTTTGT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
17 3 0.05
18 10 0.18
19 22 0.39
20 13 0.23
21 4 0.07
22 4 0.07
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
GAATTTTTAAAATATTTT
Found at i:29038541 original size:20 final size:19
Alignment explanation
Indices: 29038497--29038568 Score: 67
Period size: 20 Copynumber: 3.7 Consensus size: 19
29038487 TAAATGTTGG
*
29038497 AATTTTTATAAA-TATTTTG
1 AATTTTTA-AAATTATTTTA
*
29038516 AA-TTTTAAAATTTATTTTT
1 AATTTTTAAAA-TTATTTTA
*
29038535 AATTTTTGAAAAATATTTTA
1 AATTTTT-AAAATTATTTTA
29038555 AATATTTTAAAATT
1 AAT-TTTTAAAATT
29038569 GTTTGAATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
17 3 0.07
18 5 0.11
19 10 0.23
20 18 0.41
21 8 0.18
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.56
Consensus pattern (19 bp):
AATTTTTAAAATTATTTTA
Found at i:29038578 original size:39 final size:37
Alignment explanation
Indices: 29038491--29038580 Score: 92
Period size: 39 Copynumber: 2.4 Consensus size: 37
29038481 AATATATAAA
* * *
29038491 TGTTGGAATTTTTATAAATATTTTGAATTTTAAAATT
1 TGTTTGAATTTTTAAAAATATTTTAAATTTTAAAATT
* *
29038528 TATTTTTAATTTTTGAAAAATATTTTAAATATTTTAAAA-T
1 T-GTTTGAATTTTT-AAAAATATTTT-AA-ATTTTAAAATT
29038568 TGTTTGAATTTTT
1 TGTTTGAATTTTT
29038581 TTTTTTTTGT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
37 1 0.02
38 9 0.21
39 20 0.48
40 3 0.07
41 9 0.21
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.57
Consensus pattern (37 bp):
TGTTTGAATTTTTAAAAATATTTTAAATTTTAAAATT
Found at i:29045266 original size:15 final size:15
Alignment explanation
Indices: 29045246--29045292 Score: 67
Period size: 15 Copynumber: 3.0 Consensus size: 15
29045236 AGAGCTAATG
*
29045246 GAAGAAAAAGAAGCA
1 GAAGAAAAAGAAGAA
29045261 GAAGAAAAAGAAGAA
1 GAAGAAAAAGAAGAA
29045276 GAAGAAGAATAGAAGAA
1 GAAGAA-AA-AGAAGAA
29045293 ATAGAGATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 20 0.69
16 2 0.07
17 7 0.24
ACGTcount: A:0.68, C:0.02, G:0.28, T:0.02
Consensus pattern (15 bp):
GAAGAAAAAGAAGAA
Found at i:29045292 original size:3 final size:3
Alignment explanation
Indices: 29045246--29045284 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
29045236 AGAGCTAATG
* * *
29045246 GAA GAA AAA GAA GCA GAA GAA AAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
29045285 TAGAAGAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.69, C:0.03, G:0.28, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:29050857 original size:21 final size:21
Alignment explanation
Indices: 29050833--29050872 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
29050823 GTCCAACGTG
*
29050833 GCTAATTAACTAGTCACGTTA
1 GCTAATTAACGAGTCACGTTA
* *
29050854 GCTAGTTAACGGGTCACGT
1 GCTAATTAACGAGTCACGT
29050873 CACCTGTCCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (21 bp):
GCTAATTAACGAGTCACGTTA
Found at i:29055104 original size:15 final size:16
Alignment explanation
Indices: 29055084--29055113 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
29055074 TGGACCCACT
29055084 AAATAAAAA-TAAACC
1 AAATAAAAATTAAACC
29055099 AAATAAAAATTAAAC
1 AAATAAAAATTAAAC
29055114 GGTCCAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.73, C:0.10, G:0.00, T:0.17
Consensus pattern (16 bp):
AAATAAAAATTAAACC
Found at i:29056798 original size:2 final size:2
Alignment explanation
Indices: 29056791--29056825 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
29056781 TAAATCAATT
29056791 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
29056826 TTCCTTTCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:29057816 original size:127 final size:127
Alignment explanation
Indices: 29057571--29057804 Score: 326
Period size: 127 Copynumber: 1.8 Consensus size: 127
29057561 AAACGAAAGT
* * *
29057571 GATGTTTGATGTTTAGAAATTCGAGAGATTGTACCTCAATGTGTTGGGTTTCGGTCTTTCGTTTG
1 GATGTTTGATGTTTAGAAATTCGAGAGATCGTACCTCAATGTGTTGGGTTTCGATCTTTCATTTG
** * *
29057636 TCTAAATTGTCAAATTTCCCTTTAAAATTTCATGCGCGTTTTCTAAACCTTAAAACAAAGGC
66 TCTAAATAATCAAATTTCCCTTTAAAATTTCATCCGCCTTTTCTAAACCTTAAAACAAAGGC
* * *
29057698 GATGTTTGATGTTTAGAAATTCGAGGGATCGTGCC-CTAATGTGTTGGGTTTCGATCTTTTATTT
1 GATGTTTGATGTTTAGAAATTCGAGAGATCGTACCTC-AATGTGTTGGGTTTCGATCTTTCATTT
* * * *
29057762 GTCTAGATAATCATATTTCCCTTTTAAATTTCGTCCGCCTTTT
65 GTCTAAATAATCAAATTTCCCTTTAAAATTTCATCCGCCTTTT
29057805 GTAAGCTTTA
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
126 1 0.01
127 91 0.99
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (127 bp):
GATGTTTGATGTTTAGAAATTCGAGAGATCGTACCTCAATGTGTTGGGTTTCGATCTTTCATTTG
TCTAAATAATCAAATTTCCCTTTAAAATTTCATCCGCCTTTTCTAAACCTTAAAACAAAGGC
Found at i:29058945 original size:6 final size:6
Alignment explanation
Indices: 29058931--29058971 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
29058921 TTTCTCTCCT
* *
29058931 TTCCTC TTCCCC TTCCCC TTCCCC TTCCCT TTCCCC TTCCC
1 TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TTCCCC TTCCC
29058972 GTTGGGTTGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TTCCCC
Found at i:29061910 original size:20 final size:20
Alignment explanation
Indices: 29061885--29061924 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
29061875 ACAATTTAAA
29061885 ATATAAATTTATTAATATAT
1 ATATAAATTTATTAATATAT
*
29061905 ATATAATTTTATTAATATAT
1 ATATAAATTTATTAATATAT
29061925 GTAAAAACAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATAAATTTATTAATATAT
Done.