Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 102 of 335
Found at i:32242701 original size:3 final size:3
Alignment explanation
Indices: 32242693--32242798 Score: 74
Period size: 3 Copynumber: 35.0 Consensus size: 3
32242683 TATTGCTACC
* * *
32242693 ATT ATT ATT ATT ATT ATT ATT AATT TTT ATT ATT -TG ACAT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT A-TT ATT ATT
* * * * * *
32242739 GTT ATC ACTA ATT -TT -TT CTTT CTT ATT GTT ATT ATT ATT ATT ATT
1 ATT ATT A-TT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT
32242784 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
32242799 TATATTTATT
Statistics
Matches: 82, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
2 5 0.06
3 69 0.84
4 8 0.10
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:32242928 original size:16 final size:17
Alignment explanation
Indices: 32242909--32242946 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
32242899 AGGTACTAAT
32242909 ATTATATTTTAC-TATC
1 ATTATATTTTACTTATC
*
32242925 ATTATATTTTTCTTATC
1 ATTATATTTTACTTATC
32242942 ATTAT
1 ATTAT
32242947 CATCACTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTATATTTTACTTATC
Found at i:32250034 original size:24 final size:24
Alignment explanation
Indices: 32250002--32250104 Score: 128
Period size: 24 Copynumber: 4.5 Consensus size: 24
32249992 CACCGATGCA
32250002 TGTGACTGAAGATGAGTATGAAAC
1 TGTGACTGAAGATGAGTATGAAAC
* * *
32250026 TGTGCCTG-A-A-CA--A-GAAGC
1 TGTGACTGAAGATGAGTATGAAAC
*
32250044 TGTGACTAAAGATGAGTATGAAAC
1 TGTGACTGAAGATGAGTATGAAAC
32250068 TGTGACTGAAGATGAGTATGAAAC
1 TGTGACTGAAGATGAGTATGAAAC
32250092 TGTGACTGAAGAT
1 TGTGACTGAAGAT
32250105 TGAGACTTCT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
18 10 0.15
19 2 0.03
20 1 0.02
21 2 0.03
22 1 0.02
23 2 0.03
24 47 0.72
ACGTcount: A:0.37, C:0.11, G:0.28, T:0.24
Consensus pattern (24 bp):
TGTGACTGAAGATGAGTATGAAAC
Found at i:32254517 original size:72 final size:71
Alignment explanation
Indices: 32254396--32254595 Score: 231
Period size: 72 Copynumber: 2.8 Consensus size: 71
32254386 GAGTTAAGCC
* * *
32254396 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTTAGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGA
32254460 TAAGGTA
65 TAAGGTA
** * *
32254467 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGATACGA
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGA
*
32254532 TGAGGTA
65 TAAGGTA
* * * * * *
32254539 ATTTCAATTTCTATTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTT
1 TTTTCAATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
32254596 TTAATTTCTA
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
71 6 0.06
72 68 0.63
73 34 0.31
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGACACGAT
AAGGTA
Found at i:32254825 original size:86 final size:87
Alignment explanation
Indices: 32254615--32254945 Score: 434
Period size: 88 Copynumber: 3.8 Consensus size: 87
32254605 ACTTTTTCAA
* *
32254615 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
32254680 CTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATG-TTTTGAAAG
* *
32254703 AATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCAGGTCACG-CGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
32254767 TTTCATTATTATGTTTTGAAAG
66 TTTCATTATTATGTTTTGAAAG
* * * *
32254789 AATCAACTCGTATTACGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCT
* * * *
32254854 GTTTTTCAAT-TTCTGTCTTTCAAAAAA
64 G-TTTTCATTATTATGT-TTT--GAAAG
* * *
32254881 AATCAACTCATATTGCGAG-GGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
32254945 T
66 T
32254946 GTCAAAAAAA
Statistics
Matches: 216, Mismatches: 20, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
86 43 0.20
87 32 0.15
88 48 0.22
89 46 0.21
90 10 0.05
91 17 0.08
92 20 0.09
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (87 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
TTTCATTATTATGTTTTGAAAG
Found at i:32254861 original size:14 final size:14
Alignment explanation
Indices: 32254842--32254876 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
32254832 CGCCGAGGTA
32254842 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
32254856 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
32254870 CTTTCAA
1 TTTTCAA
32254877 AAAAAATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:32254984 original size:165 final size:166
Alignment explanation
Indices: 32254789--32255350 Score: 895
Period size: 164 Copynumber: 3.4 Consensus size: 166
32254779 GTTTTGAAAG
*
32254789 AATCAACTCGTATTACGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
*
32254854 GTTTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAG-GGTGAGTTGAGCCTCAGG
66 GTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
32254918 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
131 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
*
32254954 AATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
32255019 GTTTTTCAATTTCTGCCTTT--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 GTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
32255082 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
131 ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * *
32255118 AGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
* *
32255183 ATTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
66 GTTTTTCAATTTCTGCCTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
* *
32255248 GACACACTGAGGTAATTTCAATTTCTGTTTTC--AAA
130 GACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
* * *** * ** *
32255283 ATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGTTGAGGTATTTTCAATTTCT
1 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
32255346 GTTTT
66 GTTTT
32255351 CAAAAAATCA
Statistics
Matches: 372, Mismatches: 21, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
163 50 0.13
164 134 0.36
165 117 0.31
167 71 0.19
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (166 bp):
AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
GTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
ACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAA
Found at i:32255014 original size:76 final size:73
Alignment explanation
Indices: 32254856--32255017 Score: 234
Period size: 73 Copynumber: 2.2 Consensus size: 73
32254846 CAATTTCCGT
* *
32254856 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGT-TGTC-AAAAAAATCAACTCGTATTGCGAGGGTGAGTTGAGCCTCAGGACA
*
32254921 CGCTGAGGTA
64 CGCCGAGGTA
* *
32254931 ATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCAC
1 TTTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAG-GGTGAGTTGAGCCTCAGG--AC
32254996 ACGCCGAGGTA
63 ACGCCGAGGTA
32255007 TTTTCAATTTC
1 TTTTCAATTTC
32255018 CGTTTTTCAA
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
73 23 0.29
74 20 0.26
75 13 0.17
76 22 0.28
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (73 bp):
TTTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGGGTGAGTTGAGCCTCAGGACACG
CCGAGGTA
Found at i:32255143 original size:74 final size:74
Alignment explanation
Indices: 32255022--32255181 Score: 225
Period size: 74 Copynumber: 2.1 Consensus size: 74
32255012 AATTTCCGTT
*
32255022 TTTCAATTTCTGCCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACAC
1 TTTCAATTTCTG-CTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACAC
*
32255086 GCTGAGGTAA
65 GCCGAGGTAA
* *
32255096 TTTCAATTTCTG-TTGTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
1 TTTCAATTTCTGCTT-T-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGA-CAC
*
32255160 ACGCCGAGGTAT
63 ACGCCGAGGTAA
32255172 TTTCAATTTC
1 TTTCAATTTC
32255182 CATTTTTCAA
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
72 2 0.03
73 1 0.01
74 52 0.68
76 22 0.29
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (74 bp):
TTTCAATTTCTGCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACACG
CCGAGGTAA
Found at i:32255291 original size:329 final size:319
Alignment explanation
Indices: 32254608--32255507 Score: 1018
Period size: 329 Copynumber: 2.7 Consensus size: 319
32254598 AATTTCTACT
*
32254608 TTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-CACGCCGAGGTATTTTCA
1 TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCA
* * * * *
32254672 ATTTTTGTCTTCATTATTATGTTTTTGAAAGAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCT
66 A-TTTCGT-TTCA--ATTTTG-CTTT-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCT
*
32254737 CAGGTCACGC-GAGGTATTTTCAATTTCTGTTTTCATTATTATGTTTTGAAAGAATCAACTCGTA
125 CAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCA--A--A-------AAAG--TCAACTCGTA
* * * *
32254801 TTACGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTT
177 TTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTT
* *
32254866 CTGTCTTTCAAAAAAAATCAACTCATATTGCGAGGGTGAGTTGAGCCTCAGGACACGCTGAGGTA
242 CTGCCTTTCAAAAAAAATCAACTCATATTGCGAGGGTGAGTTGAGCCTCAGGACACACTGAGGTA
32254931 ATTTCAATTTCTG
307 ATTTCAATTTCTG
* * * *
32254944 TTGTCAAAAAAATCAACTCGTATTGCGAGTGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
1 TTTTC---AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT-ACACGCCGAGGTATT
*
32255009 TTCAATTTCCGTTTTTCAATTTCTGCCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
62 TTCAATTT-CG--TTTCAATTT-TG-CTTT-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGA
* *
32255074 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGAG
121 GCCTCAGGACACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAGTCAACTCGTATTGCGAGAG
32255139 GTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTC
186 GTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTC
*
32255204 AAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAA
251 -AAAAAAAATCAACTCATATTGCGAG-GGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAA
32255269 TTTCTG
314 TTTCTG
** * **
32255275 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG-ACACGTTGAGGTATTTTC
1 TTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTC
* * *
32255339 AATTTC---T--GTTTT-C---AAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCT-TGGC
65 AATTTCGTTTCAATTTTGCTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG-
* * * *
32255394 TCACGCGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAG
129 --ACACGCTGAGGTATTTTCAATTTCTGT-TTTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAG
* * * **
32255458 TTGAGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATATTTTTCAA
191 TTGAGCCTCAGATCACACGCCGAGGTA--TTTTCAATTTCCATTTTTCAA
32255508 AAAAATCAAC
Statistics
Matches: 498, Mismatches: 47, Indels: 58
0.83 0.08 0.10
Matches are distributed among these distances:
311 2 0.00
312 36 0.07
314 70 0.14
315 9 0.02
316 20 0.04
318 1 0.00
319 3 0.01
321 1 0.00
326 1 0.00
327 21 0.04
328 4 0.01
329 109 0.22
330 25 0.05
331 50 0.10
336 4 0.01
338 1 0.00
339 37 0.07
340 7 0.01
341 69 0.14
342 27 0.05
343 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (319 bp):
TTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTACACGCCGAGGTATTTTCA
ATTTCGTTTCAATTTTGCTTTAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTATTTTCAATTTCTGTTTTCAAAAAAGTCAACTCGTATTGCGAGAGGTGAGTTGAG
CCTCAGATCACACGCCGAGGTATTTTCAATTTCCATTTTTCAATTTCTGCCTTTCAAAAAAAATC
AACTCATATTGCGAGGGTGAGTTGAGCCTCAGGACACACTGAGGTAATTTCAATTTCTG
Found at i:32255309 original size:72 final size:73
Alignment explanation
Indices: 32255207--32255711 Score: 409
Period size: 72 Copynumber: 6.5 Consensus size: 73
32255197 GCCTTTCAAA
*
32255207 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTCAATTT
32255272 CTGTTTTC
66 CTGTTTTC
* ** ** **
32255280 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTCAATTT
32255344 CTGTTTTC
66 CTGTTTTC
* * * * * * *
32255352 AAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACACTGAGGTATTTTCAAT
*
32255417 TTCTATCTTTC
64 TTCTGT-TTTC
* **
32255428 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGAGGTATTTTTTCA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G-GGACACACTGAGGTA--TTTTCA
* *
32255493 ATTTATATTTTTC
62 ATTTCT-GTTTTC
* * * *
32255506 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACA-CT-GAGGTATTTTCAA
**
32255571 AATCTGTTTTTC
63 TTTCTG-TTTTC
* * ** *
32255583 AAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGA
1 --A----------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--ACTGA
* *
32255648 GCTATTTTCAATTTCTTTTTTTTTTC
52 GGTATTTTCAATTTC----TGTTTTC
32255674 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
32255712 TTTTTAATTT
Statistics
Matches: 348, Mismatches: 53, Indels: 54
0.76 0.12 0.12
Matches are distributed among these distances:
72 64 0.18
73 32 0.09
75 23 0.07
76 50 0.14
77 19 0.05
78 19 0.05
79 43 0.12
80 5 0.01
81 29 0.08
88 55 0.16
89 1 0.00
90 2 0.01
91 5 0.01
92 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (73 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACTGAGGTATTTTCAATTT
CTGTTTTC
Found at i:32255445 original size:76 final size:75
Alignment explanation
Indices: 32255207--32255921 Score: 419
Period size: 88 Copynumber: 9.0 Consensus size: 75
32255197 GCCTTTCAAA
* * * *
32255207 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACACTGAGGTAATTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
*
32255270 TTCTGTTTTC
66 TTCTATTTTC
* ** ** *
32255280 -AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC-T--CAAGACACGTTGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TCACACGCTGAGGTATTTTCAA
*
32255341 TTTCTGTTTTC
65 TTTCTATTTTC
* * * *
32255352 AAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
32255417 TTCTATCTTTC
66 TTCTAT-TTTC
* * *
32255428 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATCACACACTGAGGTATTTTTTC
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGGTA--TTTTC
*
32255492 AATTTATATTTTTC
63 AATTTCTA-TTTTC
* * * * *
32255506 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCT-GAGGTATTTTC-
* *
32255570 AAATCTGTTTTTCAAATTCTGTTTT
63 -AA------TTTC----TAT-TTTC
* * ** *
32255595 CAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
*
32255660 TTCTTTTTTTTTTC
66 TTC----TATTTTC
* ** * * *
32255674 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCTGCGAGA-GTTGAGTT
1 -AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC---CT--TGGCT-C-ACACGCTGAGGT
* *
32255738 GAGTCTTTTAATTTCTGTTTTTC
57 -A-T-TTTCAATTTCT-ATTTTC
* ** **
32255761 -AAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCCAG-TCACA-TATCGAGGTATTTTCA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCT-GAGGTATTTTC-
*
32255823 AAATCTGCTTTTCAAGTTAAGTTTC
63 -AA------TTTC----T-ATTTTC
* *
32255848 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
*
32255913 TTCTGTTTT
66 TTCTATTTT
32255922 TAATGTCTGT
Statistics
Matches: 503, Mismatches: 81, Indels: 114
0.72 0.12 0.16
Matches are distributed among these distances:
72 62 0.12
73 31 0.06
74 1 0.00
75 32 0.06
76 53 0.11
77 11 0.02
78 22 0.04
79 52 0.10
80 18 0.04
81 30 0.06
83 4 0.01
84 30 0.06
85 8 0.02
86 8 0.02
87 19 0.04
88 106 0.21
89 7 0.01
90 9 0.02
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (75 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAAT
TTCTATTTTC
Found at i:32255583 original size:14 final size:13
Alignment explanation
Indices: 32255564--32255599 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
32255554 TGTCGAGGTA
32255564 TTTTCAAAATCTG
1 TTTTCAAAATCTG
*
32255577 TTTTTCAAATTCTG
1 -TTTTCAAAATCTG
32255591 TTTTCAAAA
1 TTTTCAAAA
32255600 ATCAACTCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.50
Consensus pattern (13 bp):
TTTTCAAAATCTG
Found at i:32255583 original size:155 final size:149
Alignment explanation
Indices: 32255206--32255711 Score: 437
Period size: 155 Copynumber: 3.2 Consensus size: 149
32255196 TGCCTTTCAA
* * *
32255206 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACACT-GAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGTCGAGGTATTTTCAAT
* * **
32255270 TTCTG-TTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT
66 TTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACACTGAGGT
*
32255333 ATTTTCAATTTCTGTTTTC
131 ATTTTCAATTTATGTTTTC
* * * * * *
32255352 -AAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTTGGCTCAC-GCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAG-TC-GAGGTATTTTCA
* * ** *
32255415 ATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTG
64 ATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA-A-CACACACTG
*
32255480 AGGTATTTTTTCAATTTATATTTTTC
127 AGGTA--TTTTCAATTTAT-GTTTTC
* *
32255506 AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-GTCGAGGTATTTTCAA
** * ***
32255571 AATCTGTTTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGG
65 TTTCTGTTTTTC--A----------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
* * * * *
32255636 CTCACGTGCTGAGCTATTTTCAATTTCTTTTTTTTTTC
118 CACAC--ACTGAGGTATTTTCAA----TTTATGTTTTC
32255674 AAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
32255712 TTTTTAATTT
Statistics
Matches: 285, Mismatches: 43, Indels: 41
0.77 0.12 0.11
Matches are distributed among these distances:
145 41 0.14
147 16 0.06
148 4 0.01
149 35 0.12
150 1 0.00
151 11 0.04
153 11 0.04
154 5 0.02
155 60 0.21
156 1 0.00
157 2 0.01
165 11 0.04
167 42 0.15
168 13 0.05
169 32 0.11
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (149 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGTCGAGGTATTTTCAAT
TTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAACACACACTGAGGT
ATTTTCAATTTATGTTTTC
Found at i:32255640 original size:243 final size:249
Alignment explanation
Indices: 32255334--32255916 Score: 783
Period size: 253 Copynumber: 2.3 Consensus size: 249
32255324 CGTTGAGGTA
* * *
32255334 TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
32255399 CGCTGAGCTATTTTCAATTTCTATCTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGA
66 CGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
*
32255462 GC-TTCAGA-TC-AC-ACA-CTGAGGT-A-TTTTTTCAATTTATATTTTTCAAAAAAATCAACTC
131 GCTTTCA-ATTCTACGACAGCTGAGGTGAGTCTTTT-AATTTATATTTTTC--AAAAATCAACTC
* * ** * *
32255520 ACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGT
192 ACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
*
32255578 TTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
* * *
32255642 TGCTGAGCTATTTTCAATTTCTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
66 CGCTGAGCTATTTTCAATTTC---TATCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGT
* * * * * * *
32255707 TGAGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTCAAAAATCAACT
128 TGAGC-TTTCAA-TTCTACGACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCAACT
*
32255772 CATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
191 CACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
* **
32255831 TTTTCAAGTTAAG-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
32255895 CGCTGAGCTATTTTCAATTTCT
66 CGCTGAGCTATTTTCAATTTCT
32255917 GTTTTTAATG
Statistics
Matches: 297, Mismatches: 27, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
243 63 0.21
244 17 0.06
246 6 0.02
247 6 0.02
248 30 0.10
249 1 0.00
250 4 0.01
251 2 0.01
252 5 0.02
253 140 0.47
254 5 0.02
255 13 0.04
256 5 0.02
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (249 bp):
TTTTCAAATTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
CGCTGAGCTATTTTCAATTTCTATCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGA
GCTTTCAATTCTACGACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCAACTCACAT
TGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
Found at i:32255729 original size:30 final size:30
Alignment explanation
Indices: 32255693--32255754 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
32255683 CAACTCATAT
32255693 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
32255723 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
32255753 TG
1 TG
32255755 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:32259841 original size:66 final size:66
Alignment explanation
Indices: 32259731--32259859 Score: 213
Period size: 66 Copynumber: 2.0 Consensus size: 66
32259721 ATTCATATAT
32259731 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
32259796 A
66 A
** * * *
32259797 CATTCATAATGCATCTAATTAGGAGCATTTGGTTCATTTTGATCATAGCATCCTAATTCTTTG
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTG
32259860 GCATAAGCAT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
66 58 1.00
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
A
Found at i:32259981 original size:43 final size:44
Alignment explanation
Indices: 32259913--32260003 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 44
32259903 CTAGAATCAG
* * * *
32259913 TGAATTCACCAGACCTTAACACCCTATGCAGTAGGGTAACAGGT
1 TGAATTCACAAGACCTTAACACCCTAAGCAGTAGGATAACAGGC
*
32259957 TGAATTCACAAG-CCTTAACCCCCTAAGCAGTAGGATAACAGGC
1 TGAATTCACAAGACCTTAACACCCTAAGCAGTAGGATAACAGGC
32260000 TGAA
1 TGAA
32260004 GATATAGATC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 31 0.74
44 11 0.26
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (44 bp):
TGAATTCACAAGACCTTAACACCCTAAGCAGTAGGATAACAGGC
Found at i:32260112 original size:44 final size:43
Alignment explanation
Indices: 32259977--32260122 Score: 134
Period size: 44 Copynumber: 3.3 Consensus size: 43
32259967 AGCCTTAACC
* *
32259977 CCCTAAGCAGTAGGATAACAGGCTGAAGATATAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCA
* * * * ** * * *
32260020 CCCTAAACAGTAGGGAAAC-AGATCAAAGGCA-ACGAGCTTTAACC
1 CCCTAAGCAGTAGGGTAACAAGCT-GAAGATATA-GATC-TTATCA
*
32260064 CCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCA
1 CCCTAAGCAGTAGGGTAACAAGCTGAAG-ATATAGATCTTATCA
32260108 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
32260123 AAATAGATCG
Statistics
Matches: 77, Mismatches: 20, Indels: 11
0.71 0.19 0.10
Matches are distributed among these distances:
42 3 0.04
43 23 0.30
44 43 0.56
45 7 0.09
46 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAAGCTGAAGATATAGATCTTATCA
Found at i:32260131 original size:88 final size:88
Alignment explanation
Indices: 32259971--32260209 Score: 295
Period size: 88 Copynumber: 2.7 Consensus size: 88
32259961 TTCACAAGCC
* * * *
32259971 TTAACCCCCTAAGCAGTAGGATAACAGGCTGAAG-ATATAGATCTTATCACCCTAAACAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCACCCTAAGCAGTAGGG
*
32260035 AAACAGATCAAAGGCAACGAGCT
66 AAACAGATCAAAGACAACGAGCT
32260058 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCACCCTAAGCAGTAGGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCACCCTAAGCAGTAGGG
* * ** *
32260123 AAATAGATCGAAGATGATGAGCT
66 AAACAGATCAAAGACAACGAGCT
* * * * * * *
32260146 TTAACCCTCTAAGCAGTAGAGTAACAAGC-CAAATTTACAGACCTTGA-CCCCCTAAGCAGTAGG
1 TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTT-ATCACCCTAAGCAGTAGG
32260209 G
65 G
32260210 TAATGGGCTG
Statistics
Matches: 133, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
87 60 0.45
88 73 0.55
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.21
Consensus pattern (88 bp):
TTAACCCCCTAAGCAGTAGGGTAACAAGCTGAAGTTTATAGATCTTATCACCCTAAGCAGTAGGG
AAACAGATCAAAGACAACGAGCT
Found at i:32260498 original size:87 final size:87
Alignment explanation
Indices: 32260407--32260566 Score: 266
Period size: 87 Copynumber: 1.8 Consensus size: 87
32260397 AATTTTCAAA
* *
32260407 CCTTAAACCCCTAAGCAGTAAGGTAACAGGCTGAATTTCCAGATCCTAACCCTCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAAGGTAACAGGCTAAATTTCCAGATCCTAACCCCCTAAGCAGTAGG
32260472 GAAACAGATCGAAGACGAAAGG
66 GAAACAGATCGAAGACGAAAGG
* * *
32260494 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTCTAGATCTTAACCCCCTAAGCAGTAGG
1 CCTTAAACCCCTAAGCAGTAAGGTAACAGGCTAAATTTCCAGATCCTAACCCCCTAAGCAGTAGG
*
32260559 GTAACAGA
66 GAAACAGA
32260567 CCAAATTGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 67 1.00
ACGTcount: A:0.36, C:0.24, G:0.21, T:0.19
Consensus pattern (87 bp):
CCTTAAACCCCTAAGCAGTAAGGTAACAGGCTAAATTTCCAGATCCTAACCCCCTAAGCAGTAGG
GAAACAGATCGAAGACGAAAGG
Found at i:32260542 original size:130 final size:129
Alignment explanation
Indices: 32260313--32260685 Score: 375
Period size: 130 Copynumber: 2.9 Consensus size: 129
32260303 CAGACTGAAG
* * * *
32260313 ATTTACAGAT-CTAACCCCTAAGCAGTATGGAAACAGATCGAA-A-GTGATGGGCTTCAACCCCC
1 ATTTACAGATCCTAACCCCTAAGCAGTAGGGAAACAGATCGAAGACG-AAAGGCCTTCAACCCCC
* * * * * *
32260375 TAAGTAATAGGGTAACAAGCCAAATTT-TCAAACCTTAAACCCCTAAGCAGTAAGGTAACAGGCT
65 TAAGCAGTAGGGTAACAGGCCAAATTTCT-AGATCTTAAACCCCTAAGCAGTAAGGTAACAGAC-
*
32260439 GA
128 CA
* *
32260441 ATTTCCAGATCCTAACCCTCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGCCTT-AAACCCC
1 ATTTACAGATCCTAACCC-CTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGCCTTCAACCCCC
* * *
32260505 TAAGCAGTAGGGTAACAGGCTAAATTTCTAGATCTTAACCCCCTAAGCAGTAGGGTAACAGACCA
65 TAAGCAGTAGGGTAACAGGCCAAATTTCTAGATCTTAAACCCCTAAGCAGTAAGGTAACAGACCA
* * * * * * * * *
32260570 AATTGCAGATCTTATCTCCCTAAACAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTGAACCCC
1 ATTTACAGATCCTAAC-CCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAAGGCCTTCAACCCC
* * *
32260634 CTAAGCAGTAGGGTAACAGACCAAATTGC-AGATCTT-ATCTCCCTAAGCAGTA
64 CTAAGCAGTAGGGTAACAGGCCAAATTTCTAGATCTTAAAC-CCCTAAGCAGTA
32260686 GTGGAGCAGA
Statistics
Matches: 207, Mismatches: 29, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
128 11 0.05
129 70 0.34
130 117 0.57
131 8 0.04
132 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (129 bp):
ATTTACAGATCCTAACCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAAGGCCTTCAACCCCCT
AAGCAGTAGGGTAACAGGCCAAATTTCTAGATCTTAAACCCCTAAGCAGTAAGGTAACAGACCA
Found at i:32260573 original size:43 final size:43
Alignment explanation
Indices: 32260368--32260782 Score: 220
Period size: 43 Copynumber: 9.6 Consensus size: 43
32260358 GATGGGCTTC
* * *
32260368 AACCCCCTAAGTAATAGGGTAACA-AGCCAAATTTTCAA-ACCTT
1 AACCCCCTAAGCAGTAGGGTAACAGA-CCAAA-TTTCAAGATCTT
* * * ** * *
32260411 AAACCCCTAAGCAGTAAGGTAACAGGCTGAATTTCCAGATCCT
1 AACCCCCTAAGCAGTAGGGTAACAGACCAAATTTCAAGATCTT
* * * *** **
32260454 AACCCTCTAAGCAGTAGGGAAACAGATCGAAGA-CGAAAGGCCTT
1 AACCCCCTAAGCAGTAGGGTAACAGA-CCAA-ATTTCAAGATCTT
* * * *
32260498 AAACCCCTAAGCAGTAGGGTAACAGGCTAAATTTCTAGATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGACCAAATTTCAAGATCTT
*
32260541 AACCCCCTAAGCAGTAGGGTAACAGACCAAATTGC-AGATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGACCAAATTTCAAGATCTT
* * * * * * ** *
32260583 ATCTCCCTAAACAGTAGTGG-AGCAGATCGAA-GACGAAGGGTCTT
1 AACCCCCTAAGCAGTAG-GGTAACAGACCAAATTTC-AA-GATCTT
*
32260627 GAACCCCCTAAGCAGTAGGGTAACAGACCAAATTGC-AGATCTT
1 -AACCCCCTAAGCAGTAGGGTAACAGACCAAATTTCAAGATCTT
* * * * * ** *
32260670 ATCTCCCTAAGCAGTAGTGG-AGCAGATCGAA-GACGAAGGGTCTT
1 AACCCCCTAAGCAGTAG-GGTAACAGACCAAATTTC-AA-GATCTT
* * ****
32260714 AAACCCCTAAGCAGTAAGGTAACAGGTTGAATTTCCAA-ATCTT
1 AACCCCCTAAGCAGTAGGGTAACAGACCAAATTT-CAAGATCTT
*
32260757 AACCCCCTAAGCAGTAGGGAAACAGA
1 AACCCCCTAAGCAGTAGGGTAACAGA
32260783 TCGAAGACGA
Statistics
Matches: 274, Mismatches: 79, Indels: 38
0.70 0.20 0.10
Matches are distributed among these distances:
41 2 0.01
42 58 0.21
43 125 0.46
44 62 0.23
45 25 0.09
46 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (43 bp):
AACCCCCTAAGCAGTAGGGTAACAGACCAAATTTCAAGATCTT
Found at i:32260632 original size:87 final size:86
Alignment explanation
Indices: 32260537--32260818 Score: 395
Period size: 87 Copynumber: 3.3 Consensus size: 86
32260527 AATTTCTAGA
* *
32260537 TCTTAACCCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAACAGTAGTG
1 TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
32260602 GAGCAGATCGAAGACGAAGGG
66 GAGCAGATCGAAGACGAAGGG
*
32260623 TCTTGAACCCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGT
1 TCTT-AAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGT
32260688 GGAGCAGATCGAAGACGAAGGG
65 GGAGCAGATCGAAGACGAAGGG
* *** * * * * *
32260710 TCTTAAACCCCTAAGCAGTAAGGTAACAGGTTGAATTTCCAAATCTTAACCCCCTAAGCAGTAG-
1 TCTTAAACCCCTAAGCAGTAGGGTAACA-GACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGT
* *
32260774 GGAAACAGATCGAAGACGATGGG
65 GG-AGCAGATCGAAGACGAAGGG
*
32260797 CCTTAAACCCCTAAGCAGTAGG
1 TCTTAAACCCCTAAGCAGTAGG
32260819 ATACCAGGCT
Statistics
Matches: 178, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
86 28 0.16
87 150 0.84
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (86 bp):
TCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTG
GAGCAGATCGAAGACGAAGGG
Found at i:32261872 original size:20 final size:21
Alignment explanation
Indices: 32261847--32261885 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
32261837 GGTTTATTGT
32261847 TTTTTTATT-TCTTTTCTTCG
1 TTTTTTATTATCTTTTCTTCG
*
32261867 TTTTTTATTATTTTTTCTT
1 TTTTTTATTATCTTTTCTT
32261886 TCTTTTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.08, C:0.10, G:0.03, T:0.79
Consensus pattern (21 bp):
TTTTTTATTATCTTTTCTTCG
Found at i:32262677 original size:3 final size:3
Alignment explanation
Indices: 32262671--32262733 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
32262661 TTGTTATCAC
32262671 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
32262719 TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
32262734 CAATATTTAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:32262864 original size:16 final size:16
Alignment explanation
Indices: 32262840--32262870 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32262830 TATTTCACTA
32262840 TTATCATTTTTTATTG
1 TTATCATTTTTTATTG
*
32262856 TTATTATTTTTTATT
1 TTATCATTTTTTATT
32262871 ACTTACTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTATCATTTTTTATTG
Found at i:32265268 original size:20 final size:21
Alignment explanation
Indices: 32265243--32265284 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
32265233 AACCAATTTA
*
32265243 TTTAAATAATTTCTAA-AATT
1 TTTAAATAAATTCTAATAATT
32265263 TTTAAATAAATTCTAATAATT
1 TTTAAATAAATTCTAATAATT
32265284 T
1 T
32265285 ATTTAATCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTAAATAAATTCTAATAATT
Found at i:32268327 original size:17 final size:19
Alignment explanation
Indices: 32268297--32268333 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
32268287 TCAAGAAAAT
*
32268297 GGGCTGTGT-GGGCCACAC
1 GGGCTGTGTCGGCCCACAC
32268315 GGGC-GTGTCGGCCCACAC
1 GGGCTGTGTCGGCCCACAC
32268333 G
1 G
32268334 AGTGAATCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.11, C:0.32, G:0.43, T:0.14
Consensus pattern (19 bp):
GGGCTGTGTCGGCCCACAC
Found at i:32268450 original size:31 final size:31
Alignment explanation
Indices: 32268413--32268492 Score: 106
Period size: 31 Copynumber: 2.6 Consensus size: 31
32268403 CCGTGTGACC
* * * *
32268413 CACACGAGCTTGTGGGCCCACACGGATAGGG
1 CACACGAACGTGTGAGCCCACACGAATAGGG
32268444 CACACGAACGTGTGAGCCCACACGAATAGGG
1 CACACGAACGTGTGAGCCCACACGAATAGGG
* *
32268475 CACACGGACGTATGAGCC
1 CACACGAACGTGTGAGCC
32268493 TAATTTTGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.28, C:0.30, G:0.31, T:0.11
Consensus pattern (31 bp):
CACACGAACGTGTGAGCCCACACGAATAGGG
Found at i:32270838 original size:17 final size:18
Alignment explanation
Indices: 32270807--32270840 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32270797 GTATATATTA
32270807 AATTTATAATATTTTTAT
1 AATTTATAATATTTTTAT
*
32270825 AATTT-TAATTTTTTTA
1 AATTTATAATATTTTTA
32270841 AAACATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
AATTTATAATATTTTTAT
Found at i:32270965 original size:15 final size:15
Alignment explanation
Indices: 32270945--32270975 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32270935 ACATTAATTT
*
32270945 TATTTAATTTTAAAA
1 TATTTAATATTAAAA
32270960 TATTTAATATTAAAA
1 TATTTAATATTAAAA
32270975 T
1 T
32270976 GATACATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATATTAAAA
Found at i:32271778 original size:31 final size:29
Alignment explanation
Indices: 32271717--32271779 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
32271707 AAGTTTCACG
* *
32271717 TATACAATTATACTAAATTAAAGTTCATA
1 TATACAATTATACTAAATCAAAATTCATA
* *
32271746 TATACAATTATATATTAAATCAAAATTTATA
1 TATACAA-T-TATACTAAATCAAAATTCATA
32271777 TAT
1 TAT
32271780 GATTTTAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 7 0.25
30 1 0.04
31 20 0.71
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (29 bp):
TATACAATTATACTAAATCAAAATTCATA
Found at i:32273505 original size:91 final size:90
Alignment explanation
Indices: 32273325--32273512 Score: 236
Period size: 91 Copynumber: 2.1 Consensus size: 90
32273315 ACCACAAGTG
* * *
32273325 TTGCAGGTTAATACACTATCAGTAGTTGTGAATGCACAACGGGTTTGCATATAAAAGCTGTCAGT
1 TTGCAGGTTAATACACTATCAGTAGTTGCGAATGCACAACGAGTTTGCATATAAAAGCTGCCAG-
32273390 AAAAGTTGTAGGTAAACCACCAATGT
65 AAAAGTTGTAGGTAAACCACCAATGT
* * * * *
32273416 TTGCATGTTAATACGCTGTTAGTAGGTTGCGAATGCACAGCGAGTTTGCATATAAAAGCTGCCA-
1 TTGCAGGTTAATACACTATCAGTA-GTTGCGAATGCACAACGAGTTTGCATATAAAAGCTGCCAG
* *
32273480 ATAAGTTTGT-GAGTAAACCATCAATGT
65 AAAAG-TTGTAG-GTAAACCACCAATGT
32273507 TTGCAG
1 TTGCAG
32273513 ATAAACTGTC
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
90 5 0.06
91 43 0.52
92 35 0.42
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (90 bp):
TTGCAGGTTAATACACTATCAGTAGTTGCGAATGCACAACGAGTTTGCATATAAAAGCTGCCAGA
AAAGTTGTAGGTAAACCACCAATGT
Found at i:32274490 original size:26 final size:26
Alignment explanation
Indices: 32274453--32274536 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
32274443 TGATACAAAT
* *
32274453 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32274479 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32274505 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32274531 TGATAA
1 TGATAA
32274537 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:32276039 original size:26 final size:26
Alignment explanation
Indices: 32276010--32276062 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32276000 TTTACAGTTT
32276010 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
32276036 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
32276062 T
1 T
32276063 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:32276281 original size:21 final size:21
Alignment explanation
Indices: 32276255--32276302 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32276245 ATTCCCCACA
32276255 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
32276276 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
32276297 TTGAGT
1 TGGAGT
32276303 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:32280363 original size:25 final size:25
Alignment explanation
Indices: 32280305--32280387 Score: 139
Period size: 26 Copynumber: 3.2 Consensus size: 25
32280295 TGATACAAAT
*
32280305 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
32280331 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
32280356 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATG-TTCA
32280382 TGATAA
1 TGATAA
32280388 GAATTTCATG
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
25 23 0.42
26 32 0.58
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:32281900 original size:26 final size:26
Alignment explanation
Indices: 32281871--32281923 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32281861 TTTACAGTTT
32281871 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
32281897 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
32281923 T
1 T
32281924 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:32282416 original size:136 final size:137
Alignment explanation
Indices: 32282171--32282456 Score: 547
Period size: 136 Copynumber: 2.1 Consensus size: 137
32282161 GAGTAGTCTC
32282171 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
32282236 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
32282301 ACTGTTA
131 ACTGTTA
32282308 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
32282372 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
32282437 ACTGTTA
131 ACTGTTA
**
32282444 CCTGAATGGGCTT
1 CCCAAATGGGCTT
32282457 AGGCCCAATA
Statistics
Matches: 147, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
136 127 0.86
137 20 0.14
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:32286189 original size:26 final size:26
Alignment explanation
Indices: 32286152--32286235 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
32286142 TGATACAAAT
* *
32286152 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32286178 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32286204 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32286230 TGATAA
1 TGATAA
32286236 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:32287734 original size:26 final size:26
Alignment explanation
Indices: 32287705--32287757 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32287695 TTTACAGTTT
32287705 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
32287731 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
32287757 T
1 T
32287758 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:32288187 original size:129 final size:128
Alignment explanation
Indices: 32288008--32288262 Score: 412
Period size: 129 Copynumber: 2.0 Consensus size: 128
32287998 TAGTCTCCCC
32288008 TGGGCTTGCATATGTTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATC
1 TGGGCTTGCATATG-TTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATC
32288073 TGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCACTGTTA
65 TGAATAAGGGGCTAAGG-CC-GTTTA-TGTAAT-TGAAAAGGGCTCTGG-CCAGTACCACTGTTA
32288138 CAAA
125 CAAA
32288142 TGGGCTTGCAATATG-T-TGA-GTTGCATGTA-TTTG-AATGGGCCTATGGGCCATACTGTTATC
1 TGGGCTTGC-ATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATC
32288202 TGAATAAGGGGCTAAGGCCGTTTATGTAATTGAAAAGGGCTCTGGCCAGTACCACTGTTAC
65 TGAATAAGGGGCTAAGGCCGTTTATGTAATTGAAAAGGGCTCTGGCCAGTACCACTGTTAC
32288263 CTGAATGGGC
Statistics
Matches: 120, Mismatches: 0, Indels: 12
0.91 0.00 0.09
Matches are distributed among these distances:
124 16 0.13
125 15 0.12
126 6 0.05
127 5 0.04
128 2 0.02
129 44 0.37
130 4 0.03
131 10 0.08
132 3 0.03
133 1 0.01
134 9 0.08
135 5 0.04
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.32
Consensus pattern (128 bp):
TGGGCTTGCATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTTATCT
GAATAAGGGGCTAAGGCCGTTTATGTAATTGAAAAGGGCTCTGGCCAGTACCACTGTTACAAA
Found at i:32290264 original size:25 final size:26
Alignment explanation
Indices: 32290236--32290287 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
32290226 TTTACAGTTT
32290236 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
32290261 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
32290287 T
1 T
32290288 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:32290340 original size:22 final size:22
Alignment explanation
Indices: 32290299--32290340 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
32290289 CATGTTTGAC
*
32290299 TGTTGTTATTTACTGCATGCCA
1 TGTTGTTATTTACTGAATGCCA
32290321 TGTTGTTA-TTATCTGAATGC
1 TGTTGTTATTTA-CTGAATGC
32290341 ATGGGACTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.19, C:0.14, G:0.19, T:0.48
Consensus pattern (22 bp):
TGTTGTTATTTACTGAATGCCA
Found at i:32290506 original size:21 final size:21
Alignment explanation
Indices: 32290480--32290527 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32290470 ATTCCCCACA
32290480 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
32290501 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
32290522 TTGAGT
1 TGGAGT
32290528 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:32290780 original size:134 final size:138
Alignment explanation
Indices: 32290538--32290818 Score: 516
Period size: 134 Copynumber: 2.1 Consensus size: 138
32290528 AGTCTCCCCA
32290538 AATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
1 AATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
32290603 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGG-CTCTGGCCCAGTACCACT
66 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCTCTGGCCCAGTACCACT
32290667 GTTACC-C
131 GTTACCTC
*
32290674 AATGGGCTTGCATATGTTT-TTGATGTTGCATGTATTTTGAAAT-GGCCTATGGGCCATACTGTT
1 AATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
32290737 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCTCTGGCCCAGTACCACT
66 ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCTCTGGCCCAGTACCACT
*
32290802 GTTACCTG
131 GTTACCTC
32290810 AATGGGCTT
1 AATGGGCTT
32290819 AGGCCCAATA
Statistics
Matches: 141, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
134 66 0.47
135 47 0.33
136 28 0.20
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (138 bp):
AATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTGTT
ATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCCTCTGGCCCAGTACCACT
GTTACCTC
Found at i:32294567 original size:26 final size:26
Alignment explanation
Indices: 32294530--32294613 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
32294520 TGATACAAAT
* *
32294530 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32294556 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32294582 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32294608 TGATAA
1 TGATAA
32294614 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:32296115 original size:26 final size:26
Alignment explanation
Indices: 32296086--32296138 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32296076 TTTACAGTTT
32296086 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
32296112 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
32296138 T
1 T
32296139 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:32296357 original size:21 final size:21
Alignment explanation
Indices: 32296331--32296378 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32296321 ATTCCCCACA
32296331 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
32296352 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
32296373 TTGAGT
1 TGGAGT
32296379 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:32296628 original size:136 final size:135
Alignment explanation
Indices: 32296385--32296668 Score: 541
Period size: 136 Copynumber: 2.1 Consensus size: 135
32296375 GAGTAGTCTC
32296385 CCCAAATGGGCTTGCATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
1 CCCAAATGGGCTTGCATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
32296450 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
66 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
32296515 TGTTA
131 TGTTA
32296520 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTA-TGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
32296585 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
65 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
32296650 CTGTTA
130 CTGTTA
**
32296656 CCTGAATGGGCTT
1 CCCAAATGGGCTT
32296669 AGGCCCAATA
Statistics
Matches: 146, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
135 23 0.16
136 123 0.84
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTATGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:32300403 original size:26 final size:26
Alignment explanation
Indices: 32300366--32300449 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
32300356 TGATACAAAT
* *
32300366 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32300392 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32300418 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
32300444 TGATAA
1 TGATAA
32300450 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:32301946 original size:26 final size:26
Alignment explanation
Indices: 32301917--32301969 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
32301907 TTTACAGTTT
32301917 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
32301943 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
32301969 T
1 T
32301970 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:32302185 original size:21 final size:21
Alignment explanation
Indices: 32302159--32302206 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32302149 ATTCCCCACA
32302159 TGGAGTGTA-TGGCTGGTAGGG
1 TGGAGTGTAGTGGCTGGT-GGG
*
32302180 TGGAGTGTAGTGGTTGGTGGG
1 TGGAGTGTAGTGGCTGGTGGG
*
32302201 TTGAGT
1 TGGAGT
32302207 AGTCTCCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.12, C:0.02, G:0.52, T:0.33
Consensus pattern (21 bp):
TGGAGTGTAGTGGCTGGTGGG
Found at i:32302457 original size:136 final size:135
Alignment explanation
Indices: 32302213--32302496 Score: 523
Period size: 136 Copynumber: 2.1 Consensus size: 135
32302203 GAGTAGTCTC
32302213 CCCAAATGGGCTTGCATATGTTATTGTGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
1 CCCAAATGGGCTTGCATATGTTATTGTGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
32302278 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
66 TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
32302343 TGTTA
131 TGTTA
*
32302348 CCCAAATGGGCTTGCATATGTTATTGATGTTGCGTGTATTTTGAAATGGGCCTATGGGCCATACT
1 CCCAAATGGGCTTGCATATGTTATTG-TGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
*
32302413 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACCA
65 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
32302478 CTGTTA
130 CTGTTA
**
32302484 CCTGAATGGGCTT
1 CCCAAATGGGCTT
32302497 AGGCCCAATA
Statistics
Matches: 144, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
135 26 0.18
136 118 0.82
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (135 bp):
CCCAAATGGGCTTGCATATGTTATTGTGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACTG
TTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCAC
TGTTA
Found at i:32304183 original size:22 final size:22
Alignment explanation
Indices: 32304157--32304203 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
32304147 TATATCTATT
**
32304157 GTATCTATATTTATTATGGTAC
1 GTATCTATATTTACGATGGTAC
32304179 GTATCTATATTTACGATGGTAC
1 GTATCTATATTTACGATGGTAC
32304201 GTA
1 GTA
32304204 CAGTCTACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.45
Consensus pattern (22 bp):
GTATCTATATTTACGATGGTAC
Found at i:32304572 original size:45 final size:44
Alignment explanation
Indices: 32304450--32304582 Score: 135
Period size: 46 Copynumber: 2.9 Consensus size: 44
32304440 TTTACATTGT
* * *
32304450 TGAGTGGTTTATCCACACCGTTAGAGCAGCTTTTATCTGCAACGTT
1 TGAGTGGTTTATCCACACCG-TATAGCAGCTTTTATTTGCAAC-TA
* *
32304496 TGAGTGGTTTATCCACACTGTATCAGTAGCTTTTATTTGCAA-TAA
1 TGAGTGGTTTATCCACACCGTAT-AGCAGCTTTTATTTGCAACT-A
* *
32304541 TGAGTGGTTTAACCACACCGTACTACCAGC-TTTATTCTGCAA
1 TGAGTGGTTTATCCACACCGTA-TAGCAGCTTTTATT-TGCAA
32304583 ACATATTGTG
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
44 7 0.09
45 31 0.42
46 36 0.49
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (44 bp):
TGAGTGGTTTATCCACACCGTATAGCAGCTTTTATTTGCAACTA
Found at i:32304713 original size:21 final size:21
Alignment explanation
Indices: 32304684--32304723 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
32304674 TGGTTTATCT
*
32304684 GCAACGAGTTGTTCATCCACA
1 GCAACGAGTGGTTCATCCACA
* *
32304705 GCAATGAGTGGTTTATCCA
1 GCAACGAGTGGTTCATCCA
32304724 TAACGTGGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.28
Consensus pattern (21 bp):
GCAACGAGTGGTTCATCCACA
Found at i:32310295 original size:20 final size:19
Alignment explanation
Indices: 32310253--32310296 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
32310243 ATTTTTTATT
*
32310253 TGTTTTTTGTTTTAATATT
1 TGTTTTTTGTTTTAATATG
32310272 TGTTTTTATGTTTTTAA-ATG
1 TGTTTTT-TG-TTTTAATATG
32310292 TGTTT
1 TGTTT
32310297 GATTTATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 9 0.41
21 6 0.27
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.70
Consensus pattern (19 bp):
TGTTTTTTGTTTTAATATG
Found at i:32317887 original size:11 final size:10
Alignment explanation
Indices: 32317854--32317913 Score: 61
Period size: 11 Copynumber: 5.9 Consensus size: 10
32317844 CCTTAAATCT
32317854 AATTTTTAT-
1 AATTTTTATA
*
32317863 AATAATTTATA
1 AAT-TTTTATA
32317874 AATTTTTAATA
1 AATTTTT-ATA
32317885 AATCTTTTATA
1 AAT-TTTTATA
*
32317896 TATTTTTA-A
1 AATTTTTATA
32317905 AATTTTTAT
1 AATTTTTAT
32317914 GATTTAAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
9 11 0.26
10 13 0.31
11 14 0.33
12 4 0.10
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (10 bp):
AATTTTTATA
Found at i:32324295 original size:12 final size:12
Alignment explanation
Indices: 32324274--32324303 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32324264 TTTTCAAAAT
*
32324274 TAAAAGAAATTA
1 TAAAAAAAATTA
32324286 TAAAAAAAATTA
1 TAAAAAAAATTA
32324298 TAAAAA
1 TAAAAA
32324304 TTAGCATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.23
Consensus pattern (12 bp):
TAAAAAAAATTA
Found at i:32325909 original size:114 final size:113
Alignment explanation
Indices: 32325710--32325919 Score: 253
Period size: 114 Copynumber: 1.8 Consensus size: 113
32325700 AAGGTTGAGC
* * * * *
32325710 ATTAGCGGCGCTTCCCTAAAACGTCGCAATAGATCAAGCATTAGCGATGTTTTAAAGAAAGCGCT
1 ATTAGCGGCGCTTCCCAAAAACGCCGCAAAAGATCAAGCATTAACGATGTTTTAAAGAAAGCGCC
* *
32325775 GCTAAAAGATTCAGCAGAACGGCGTCGTTTACATTGAGTTTCCACGGA
66 GCTAAAAGATTAAGCAGAACGACGTCGTTTACATTGAGTTTCCACGGA
** * *
32325823 ATTAGCGGCGCTTAGGCAAAAACGCCGCAAAAGATCGAGCATTAAC-AGTGTTTT-TAGAAAAGC
1 ATTAGCGGCGCTT-CCCAAAAACGCCGCAAAAGATCAAGCATTAACGA-TGTTTTAAAG-AAAGC
* **
32325886 GCCGCTAAAATATTAAGGTGAACGACGTCGTTTA
63 GCCGCTAAAAGATTAAGCAGAACGACGTCGTTTA
32325920 GATTAAGCTT
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
113 16 0.20
114 64 0.80
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (113 bp):
ATTAGCGGCGCTTCCCAAAAACGCCGCAAAAGATCAAGCATTAACGATGTTTTAAAGAAAGCGCC
GCTAAAAGATTAAGCAGAACGACGTCGTTTACATTGAGTTTCCACGGA
Found at i:32325938 original size:114 final size:113
Alignment explanation
Indices: 32325710--32325949 Score: 250
Period size: 114 Copynumber: 2.1 Consensus size: 113
32325700 AAGGTTGAGC
* * * * *
32325710 ATTAGCGGCGCTTCCCTAAAACGTCGCAATAGATCAAGCATTAGCGATGTTTTAAAGAAAGCGCT
1 ATTAGCGGCGCTTCCCAAAAACGCCGCAAAAGATCAAGCATTAACGATGTTTTAAAGAAAGCGCC
* * * * *
32325775 GCTAAAAGATTCAGCAGAACGGCGTCGTTTACATTGAGTTTCCACGGA
66 GCTAAAAGATTAAGCAGAACGACGTCGTTTACATTAAGCTTACACGGA
** * *
32325823 ATTAGCGGCGCTTAGGCAAAAACGCCGCAAAAGATCGAGCATTAAC-AGTGTTTT-TAGAAAAGC
1 ATTAGCGGCGCTT-CCCAAAAACGCCGCAAAAGATCAAGCATTAACGA-TGTTTTAAAG-AAAGC
* ** * **
32325886 GCCGCTAAAATATTAAGGTGAACGACGTCGTTTAGATTAAGCTTACGTGGA
63 GCCGCTAAAAGATTAAGCAGAACGACGTCGTTTACATTAAGCTTACACGGA
*
32325937 ATTAGTGGCGCTT
1 ATTAGCGGCGCTT
32325950 TCAGGAAAAC
Statistics
Matches: 103, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
113 16 0.16
114 87 0.84
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (113 bp):
ATTAGCGGCGCTTCCCAAAAACGCCGCAAAAGATCAAGCATTAACGATGTTTTAAAGAAAGCGCC
GCTAAAAGATTAAGCAGAACGACGTCGTTTACATTAAGCTTACACGGA
Found at i:32326689 original size:28 final size:27
Alignment explanation
Indices: 32326629--32326717 Score: 81
Period size: 28 Copynumber: 3.1 Consensus size: 27
32326619 ACTATTTAAA
*
32326629 GGTTTATGGATTATGGGTTTAGGGATTAT
1 GGTTTATGGATTAT-GGTTTAGGG-TTGT
*
32326658 -GTTTATGGCTTATGGTTTAAGGGTTGT
1 GGTTTATGGATTATGGTTT-AGGGTTGT
* * *
32326685 GGTTTAAGGGTTATGGCTTAGTGGTTAGT
1 GGTTTATGGATTATGGTTTAG-GGTT-GT
32326714 GGTT
1 GGTT
32326718 AGGGGTTTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
27 10 0.20
28 35 0.69
29 6 0.12
ACGTcount: A:0.17, C:0.02, G:0.36, T:0.45
Consensus pattern (27 bp):
GGTTTATGGATTATGGTTTAGGGTTGT
Found at i:32326710 original size:14 final size:14
Alignment explanation
Indices: 32326667--32326770 Score: 84
Period size: 14 Copynumber: 7.3 Consensus size: 14
32326657 TGTTTATGGC
* *
32326667 TTATGGTTTAAGGG
1 TTATGGCTTAGGGG
* * *
32326681 TTGTGGTTTAAGGG
1 TTATGGCTTAGGGG
*
32326695 TTATGGCTTAGTGG
1 TTATGGCTTAGGGG
32326709 TTAGTGG-TTAGGGG
1 TTA-TGGCTTAGGGG
* *
32326723 TTTATGGGTTATGGG
1 -TTATGGCTTAGGGG
*
32326738 TTAATGGTTTAGGGG
1 TT-ATGGCTTAGGGG
*
32326753 TTAAGGCTTAGGGG
1 TTATGGCTTAGGGG
32326767 TTAT
1 TTAT
32326771 TATTTTGTGG
Statistics
Matches: 74, Mismatches: 12, Indels: 8
0.79 0.13 0.09
Matches are distributed among these distances:
14 50 0.68
15 24 0.32
ACGTcount: A:0.17, C:0.02, G:0.39, T:0.41
Consensus pattern (14 bp):
TTATGGCTTAGGGG
Found at i:32326727 original size:29 final size:29
Alignment explanation
Indices: 32326679--32326769 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 29
32326669 ATGGTTTAAG
*
32326679 GGTT-GTGGTTTAAGGGTTATGGCTTAGT
1 GGTTAGTGGTTTAGGGGTTATGGCTTAGT
*
32326707 GGTTAGTGG-TTAGGGGTTTATGGGTTA-T
1 GGTTAGTGGTTTAGGGG-TTATGGCTTAGT
* * *
32326735 GGGTTAATGGTTTAGGGGTTAAGGCTTAGG
1 -GGTTAGTGGTTTAGGGGTTATGGCTTAGT
32326765 GGTTA
1 GGTTA
32326770 TTATTTTGTG
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
28 11 0.21
29 34 0.65
30 7 0.13
ACGTcount: A:0.16, C:0.02, G:0.42, T:0.40
Consensus pattern (29 bp):
GGTTAGTGGTTTAGGGGTTATGGCTTAGT
Found at i:32326733 original size:22 final size:22
Alignment explanation
Indices: 32326702--32326768 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
32326692 GGGTTATGGC
*
32326702 TTAGTGGTTAGTGGTTAGGGGT
1 TTAGGGGTTAGTGGTTAGGGGT
* **
32326724 TTATGGGTTA-TGGGTTAATGGT
1 TTAGGGGTTAGT-GGTTAGGGGT
*
32326746 TTAGGGGTTAAG-GCTTAGGGGT
1 TTAGGGGTT-AGTGGTTAGGGGT
32326768 T
1 T
32326769 ATTATTTTGT
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.16, C:0.01, G:0.42, T:0.40
Consensus pattern (22 bp):
TTAGGGGTTAGTGGTTAGGGGT
Found at i:32326744 original size:8 final size:7
Alignment explanation
Indices: 32326632--32326770 Score: 61
Period size: 7 Copynumber: 19.6 Consensus size: 7
32326622 ATTTAAAGGT
*
32326632 TTATGGA
1 TTATGGG
32326639 TTATGGG
1 TTATGGG
32326646 TT-TAGGG
1 TTAT-GGG
*
32326653 ATTAT-GT
1 -TTATGGG
*
32326660 TTATGGC
1 TTATGGG
*
32326667 TTATGGT
1 TTATGGG
*
32326674 TTAAGGG
1 TTATGGG
* *
32326681 TTGTGGT
1 TTATGGG
*
32326688 TTAAGGG
1 TTATGGG
*
32326695 TTATGGC
1 TTATGGG
32326702 TTA-GTGG
1 TTATG-GG
32326709 TTA-GTGG
1 TTATG-GG
*
32326716 TTAGGGG
1 TTATGGG
32326723 TTTATGGG
1 -TTATGGG
32326731 TTATGGG
1 TTATGGG
*
32326738 TTAATGGT
1 TT-ATGGG
*
32326746 TTAGGGG
1 TTATGGG
* *
32326753 TTAAGGC
1 TTATGGG
*
32326760 TTAGGGG
1 TTATGGG
32326767 TTAT
1 TTAT
32326771 TATTTTGTGG
Statistics
Matches: 100, Mismatches: 24, Indels: 16
0.71 0.17 0.11
Matches are distributed among these distances:
6 6 0.06
7 78 0.78
8 15 0.15
9 1 0.01
ACGTcount: A:0.18, C:0.02, G:0.37, T:0.42
Consensus pattern (7 bp):
TTATGGG
Found at i:32326996 original size:21 final size:21
Alignment explanation
Indices: 32326962--32327014 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
32326952 TTGTTTTGCG
*
32326962 GTTTATGG-TTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
32326982 GTTTAGGGTTTAGGGGATATA
1 GTTTAGGGTTTAGGGGATATA
*
32327003 GTTTAGAGTTTA
1 GTTTAGGGTTTA
32327015 AGGTTATGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 7 0.23
21 23 0.77
ACGTcount: A:0.25, C:0.00, G:0.34, T:0.42
Consensus pattern (21 bp):
GTTTAGGGTTTAGGGGATATA
Found at i:32327012 original size:28 final size:28
Alignment explanation
Indices: 32326981--32327048 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
32326971 TAGGGGATAT
*
32326981 AGTTTAGGGTT-TAGGGGATATAGTTTAG
1 AGTTTAAGGTTAT-GGGGATATAGTTTAG
32327009 AGTTTAAGGTTATGGGGATATAGTTTA-
1 AGTTTAAGGTTATGGGGATATAGTTTAG
32327036 ATGGTTTAAGGTT
1 A--GTTTAAGGTT
32327049 TAGAGTTTTG
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
27 1 0.03
28 24 0.67
29 11 0.31
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.41
Consensus pattern (28 bp):
AGTTTAAGGTTATGGGGATATAGTTTAG
Found at i:32328893 original size:22 final size:22
Alignment explanation
Indices: 32328865--32328918 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
32328855 AAATTTTGGC
32328865 AGCCCTCTGCATCGCCT-TCAGT
1 AGCCCTCTGCATCG-CTGTCAGT
**
32328887 AGCCCTCTGCATCGCTGTTTGT
1 AGCCCTCTGCATCGCTGTCAGT
32328909 AGCCCTCTGC
1 AGCCCTCTGC
32328919 TGCATCTCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 2 0.07
22 27 0.93
ACGTcount: A:0.11, C:0.39, G:0.20, T:0.30
Consensus pattern (22 bp):
AGCCCTCTGCATCGCTGTCAGT
Found at i:32330456 original size:105 final size:105
Alignment explanation
Indices: 32330235--32330886 Score: 1090
Period size: 105 Copynumber: 6.2 Consensus size: 105
32330225 ATTTTAAATA
* *
32330235 TTTTATTTAATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTT-AATATGT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* * *
32330299 TATTTTATTTTATTTTAATCAAGAAAAATATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
32330339 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* *
32330404 TATTTGATTTTAATTTAATCACGGAAAGTATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
32330444 TTTTATTTTATTTTAAAATTACATAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
32330509 TATTTGATTTTAATTTAATCACGGAAAATATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
* *
32330549 TTTTATTTTATTTTAAAATTACATAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
32330614 TATTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
32330654 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
32330719 TATTTGATTTTAATTTAATCACTAAAAATATTTTGTCTAC
66 TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
*
32330759 TTTTATTTTATTTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTCGAATATG
1 TTTTATTTTA-TTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTT-TAA-A--
* *
32330824 TTATTTTATTTTATTTTATTTTAATCACGAAAAATATTTTGTCTAC
61 -TATTTTATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
32330870 TTTTATTTTATTTTTAA
1 TTTTATTTTATTTTTAA
32330887 TCTAATAACC
Statistics
Matches: 523, Mismatches: 18, Indels: 8
0.95 0.03 0.01
Matches are distributed among these distances:
104 56 0.11
105 359 0.69
106 46 0.09
107 2 0.00
108 1 0.00
110 7 0.01
111 52 0.10
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.55
Consensus pattern (105 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTGATTTTAATTTAATCACGAAAAATATTTTGTCTAC
Found at i:32336609 original size:21 final size:21
Alignment explanation
Indices: 32336551--32336613 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
32336541 ACAACTTAGA
*
32336551 GCAGAGGCAGCAGA-GAGGGAG
1 GCAGCGGCAGCA-ACGAGGGAG
* *
32336572 GCAGCGGTAGCAGCGAGGGAG
1 GCAGCGGCAGCAACGAGGGAG
*
32336593 GCAGCGGCAGTAACGAGGGAG
1 GCAGCGGCAGCAACGAGGGAG
32336614 ACAGAGCAGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.51, T:0.03
Consensus pattern (21 bp):
GCAGCGGCAGCAACGAGGGAG
Found at i:32342158 original size:49 final size:49
Alignment explanation
Indices: 32342102--32342346 Score: 292
Period size: 49 Copynumber: 4.9 Consensus size: 49
32342092 TAGACAAGGC
* * *
32342102 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACGCGTAGTAGCCTACACTTAGTACTACACACGCGACCAAT
* * *
32342151 TATCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACGCGTAGTAGCCTACACTTAGTACTACACACGCGACC-AAT
* * * * *
32342201 CATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGT
1 TATCTGGTACGCGTAGTAGCCTACACTTAGTACTACACACGCGA-CCAA-T
* * * *
32342252 TATCGGGTACGCATAGTAGCCTCCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACGCGTAGTAGCCTACACTTAGTACTACACACGCGACCAAT
** * *
32342301 TATCCAGTACGCGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TATCTGGTACGCGTAGTAGCCTACACTTAGTACTACACACGCGACC
32342347 TCACAATAGA
Statistics
Matches: 168, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
49 82 0.49
50 49 0.29
51 37 0.22
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TATCTGGTACGCGTAGTAGCCTACACTTAGTACTACACACGCGACCAAT
Found at i:32342613 original size:27 final size:27
Alignment explanation
Indices: 32342573--32342626 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
32342563 AAGTACAACC
*
32342573 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
**
32342600 CATGTAATAATAATTTGCCATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
32342627 TCACATAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.07, T:0.41
Consensus pattern (27 bp):
CATGTAATAATAATTTAACATTCAATT
Found at i:32344835 original size:20 final size:20
Alignment explanation
Indices: 32344806--32344850 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32344796 AGCACATGTA
* *
32344806 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
32344826 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
32344846 TTCAT
1 TTCAT
32344851 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:32344952 original size:20 final size:19
Alignment explanation
Indices: 32344915--32344953 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
32344905 TATCAACAAT
*
32344915 ATTTTAATTTCTACCATAA
1 ATTTTAATTTCCACCATAA
*
32344934 ATTTATAATTTCCAGCATAA
1 ATTT-TAATTTCCACCATAA
32344954 TATACCCATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (19 bp):
ATTTTAATTTCCACCATAA
Found at i:32355018 original size:20 final size:20
Alignment explanation
Indices: 32354989--32355033 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
32354979 AGCACATGTA
* *
32354989 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
32355009 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
32355029 TTCAT
1 TTCAT
32355034 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:32357831 original size:6 final size:6
Alignment explanation
Indices: 32357807--32357937 Score: 83
Period size: 6 Copynumber: 21.3 Consensus size: 6
32357797 AAGAAACATT
* * * *
32357807 ATCAGA A-CTAGA TTCAGA ATCAGA ATCAAA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * *
32357856 ATCAGA ACCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
32357907 A-CAGA ATCA-A CATCAGA ATCAGA ATCAGA AT
1 ATCAGA ATCAGA -ATCAGA ATCAGA ATCAGA AT
32357938 GTGAATGCAA
Statistics
Matches: 96, Mismatches: 16, Indels: 26
0.70 0.12 0.19
Matches are distributed among these distances:
5 7 0.07
6 76 0.79
7 10 0.10
8 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.17, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:32357855 original size:25 final size:25
Alignment explanation
Indices: 32357827--32357897 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
32357817 GATTCAGAAT
* *
32357827 CAGAATCAAAATCAGAATTAGGTGA
1 CAGAATCAAAATCAGAATCAGGTAA
* * *
32357852 CAGAATCAGAACCAGTATCAGGTAA
1 CAGAATCAAAATCAGAATCAGGTAA
32357877 CAGAATCAAAATCAGAATCAG
1 CAGAATCAAAATCAGAATCAG
32357898 TATCAGGTAA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.48, C:0.17, G:0.18, T:0.17
Consensus pattern (25 bp):
CAGAATCAAAATCAGAATCAGGTAA
Found at i:32357890 original size:31 final size:31
Alignment explanation
Indices: 32357855--32357934 Score: 133
Period size: 31 Copynumber: 2.6 Consensus size: 31
32357845 TAGGTGACAG
*
32357855 AATCAGAACCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
32357886 AATCAGAATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGTATCAGGTAACAGAATCAA
* *
32357917 CATCAGAATCAGAATCAG
1 AATCAGAATCAGTATCAG
32357935 AATGTGAATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.47, C:0.19, G:0.16, T:0.17
Consensus pattern (31 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAA
Found at i:32357914 original size:25 final size:25
Alignment explanation
Indices: 32357827--32357937 Score: 88
Period size: 25 Copynumber: 4.5 Consensus size: 25
32357817 GATTCAGAAT
* * *
32357827 CAGAATCAAAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
32357852 CAGAATCAGAACCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
32357877 CAGAATCAAAATCAGAATCA-GTAT
1 CAGAATCAGAATCAGAATCAGGTAA
32357901 CAGGTAA-CAGAATCA-ACATCA-G-AA
1 CA-G-AATCAGAATCAGA-ATCAGGTAA
32357925 TCAGAATCAGAAT
1 -CAGAATCAGAAT
32357938 GTGAATGCAA
Statistics
Matches: 70, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
23 2 0.03
24 14 0.20
25 52 0.74
26 2 0.03
ACGTcount: A:0.48, C:0.17, G:0.17, T:0.18
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:32358387 original size:27 final size:27
Alignment explanation
Indices: 32358364--32358961 Score: 648
Period size: 27 Copynumber: 22.3 Consensus size: 27
32358354 CGAGGGTTTC
32358364 TCGATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32358391 TC-AGT-ATTCCTACCCTACAAGGGTATT
1 TCGA-TAATT-CTACCCTACAGGGGTATT
*
32358418 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32358445 TCGGTAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32358472 TCGATAATTCTACCCCACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
32358499 TCGATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32358526 TCAATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * *
32358553 TCGGTAATTCTACCTTATAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * *
32358580 TCGGTAATTTTATCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* *
32358607 TC-AGTAATTCTACCATATAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
*
32358634 TC-AGTAATTCTA-CCT--TGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* *
32358658 TCAATAATTTTACCCTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* *
32358685 TCAATAATTCTACCTTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32358712 TC-AGTAATTCTACACTACAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * * *
32358739 T-GGTAATTCTACCTTGCAAGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* *
32358765 T-TAGTAATTCTACCCTACAAGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * * *
32358792 TTGGTAATTTTACCTTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
* * * *
32358819 T-TAGTAATTGTACCTTATAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * *
32358846 TCGGTAATTCTACCTTACAGGAGT-TT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32358872 TC-AGTAATTCTACTCTACAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
* * *
32358899 TCGGTAATTTTACCTTACAGGGGTATT
1 TCGATAATTCTACCCTACAGGGGTATT
*
32358926 TC-AGTAATTCTACCTTACAGGGGTATT
1 TCGA-TAATTCTACCCTACAGGGGTATT
32358953 TCGATAATT
1 TCGATAATT
32358962 TTACAAATCG
Statistics
Matches: 490, Mismatches: 61, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
24 17 0.03
25 4 0.01
26 48 0.10
27 417 0.85
28 4 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (27 bp):
TCGATAATTCTACCCTACAGGGGTATT
Found at i:32358465 original size:81 final size:81
Alignment explanation
Indices: 32358368--32358954 Score: 747
Period size: 81 Copynumber: 7.3 Consensus size: 81
32358358 GGTTTCTCGA
*
32358368 TAATTCTACCCTACAGGGGTATTTCAGT-ATTCCTACCCTACAAGGGTATTTCGGTAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATT-CTACCCTACAGGGGTATTTCGGTAATTCTACC
*
32358432 CTACAGGGGTATTTCGG
65 CTACAGGGGTATTTCAG
* *
32358449 TAATTCTACCCTACAGGGGTATTTC-GATAATTCTACCCCACAGGGGTATTTCGATAATTCTACC
1 TAATTCTACCCTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACC
*
32358513 CTACAGGGGTATTTCAA
65 CTACAGGGGTATTTCAG
* * * * *
32358530 TAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCGGTAATTTTATCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
32358595 TACAGGGGTATTTCAG
66 TACAGGGGTATTTCAG
* * * ** *
32358611 TAATTCTACCATATAGGGGTATTTCAGTAATTCTA-CCT--TGGGGTATTTCAATAATTTTACCC
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
*
32358673 TACAGGGGTATTTCAA
66 TACAGGGGTATTTCAG
* * *
32358689 TAATTCTACCTTACAGGGGTATTTCAGTAATTCTACACTACAGGGGTATTT-GGTAATTCTACCT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
* * *
32358753 TGCAAGGGTATTTTAG
66 TACAGGGGTATTTCAG
* ** * * ** * *
32358769 TAATTCTACCCTACAAGGGTATTTTGGTAATTTTACCTTACAGGGGTATTTTAGTAATTGTACCT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
* *
32358834 TATAGGGGTATTTCGG
66 TACAGGGGTATTTCAG
* * * * *
32358850 TAATTCTACCTTACAGGAGT-TTTCAGTAATTCTACTCTACAGGGGTATTTCGGTAATTTTACCT
1 TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
32358914 TACAGGGGTATTTCAG
66 TACAGGGGTATTTCAG
*
32358930 TAATTCTACCTTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
32358955 GATAATTTTA
Statistics
Matches: 437, Mismatches: 61, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
78 68 0.16
79 2 0.00
80 137 0.31
81 226 0.52
82 4 0.01
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.37
Consensus pattern (81 bp):
TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCC
TACAGGGGTATTTCAG
Found at i:32358980 original size:54 final size:54
Alignment explanation
Indices: 32358364--32358961 Score: 755
Period size: 54 Copynumber: 11.2 Consensus size: 54
32358354 CGAGGGTTTC
* *
32358364 TCGATAATTCTACCCTACAGGGGTATTTCAGT-ATTCCTACCCTACAAGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATT-CTACCCTACAGGGGTATT
* * *
32358418 TCGGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
**
32358472 TCGATAATTCTACCCCACAGGGGTATTTC-GATAATTCTACCCTACAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAG-TAATTCTACCCTACAGGGGTATT
* * * * *
32358526 TCAATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * * *
32358580 TCGGTAATTTTATCC-TACAGGGGTATTTCAGTAATTCTACCATATAGGGGTATT
1 TCGATAATTCTA-CCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* *
32358634 TC-AGTAATTCTACCTT---GGGGTATTTCAATAATTTTACCCTACAGGGGTATT
1 TCGA-TAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* *
32358685 TCAATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACACTACAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * * * *
32358739 T-GGTAATTCTACCTTGCAAGGGTATTTTAGTAATTCTACCCTACAAGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * * * * * *
32358792 TTGGTAATTTTACCTTACAGGGGTATTTTAGTAATTGTACCTTATAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * *
32358846 TCGGTAATTCTACCTTACAGGAGT-TTTCAGTAATTCTACTCTACAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
* * *
32358899 TCGGTAATTTTACCTTACAGGGGTATTTCAGTAATTCTACCTTACAGGGGTATT
1 TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
32358953 TCGATAATT
1 TCGATAATT
32358962 TTACAAATCG
Statistics
Matches: 482, Mismatches: 50, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
51 45 0.09
52 1 0.00
53 95 0.20
54 335 0.70
55 6 0.01
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (54 bp):
TCGATAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATT
Found at i:32362076 original size:15 final size:16
Alignment explanation
Indices: 32362056--32362085 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32362046 TAATTTGTAA
32362056 AAATGGG-AAAATAAT
1 AAATGGGTAAAATAAT
32362071 AAATGGGTAAAATAA
1 AAATGGGTAAAATAA
32362086 AAAAATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (16 bp):
AAATGGGTAAAATAAT
Found at i:32370043 original size:17 final size:17
Alignment explanation
Indices: 32370003--32370045 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
32369993 TTAACTTTTT
* *
32370003 TGATTAAATTATAATATT
1 TGATT-AATTAGAATATG
*
32370021 TAATTAATTAGAATATG
1 TGATTAATTAGAATATG
32370038 TGATTAAT
1 TGATTAAT
32370046 AATGTTTCTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 17 0.81
18 4 0.19
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (17 bp):
TGATTAATTAGAATATG
Found at i:32372928 original size:9 final size:9
Alignment explanation
Indices: 32372914--32372947 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
32372904 AATGATTATC
32372914 TAATAATAT
1 TAATAATAT
32372923 TAATAATAT
1 TAATAATAT
32372932 TAATAATAT
1 TAATAATAT
*
32372941 CAATAAT
1 TAATAAT
32372948 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
TAATAATAT
Found at i:32374291 original size:50 final size:50
Alignment explanation
Indices: 32374173--32374358 Score: 201
Period size: 50 Copynumber: 3.7 Consensus size: 50
32374163 GTGAGAACAA
* ***
32374173 ATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAAATGGTTTTAGGTCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGG--TTAGGTCAC
* * * *
32374225 GTGTGTAGTACCAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTAGGTCAC
* ** * * *
32374275 ATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCAC
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAAT-GGTTAGGTCAC
* *
32374326 ATGTGTGGTACTAAGTGCAGGCCACTATGTGTA
1 ATGTGTAGTACTAAGTGCAGGCTACTATGTGTA
32374359 AAAGATAGCT
Statistics
Matches: 112, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
50 41 0.37
51 37 0.33
52 34 0.30
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
ATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATGGTTAGGTCAC
Found at i:32374366 original size:51 final size:51
Alignment explanation
Indices: 32374277--32374452 Score: 176
Period size: 51 Copynumber: 3.5 Consensus size: 51
32374267 TAGGTCGCAT
* * * *** * *
32374277 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGCTTCGATCACAT
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATCACAA
*
32374328 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGGTCACAA
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATCACAA
* * * * *
32374379 GTGCGGTACTATGTGAAGGCCACTTTGTG-AAGAAGGTAGCTTTGA-CTACAA
1 GTGTGGTACTAAGTGCAGGCCACTATGTGTAA-AAGATAGCTTTGATC-ACAA
* *
32374430 GGGTGGTACTATGTGCAGGCCAC
1 GTGTGGTACTAAGTGCAGGCCAC
32374453 CGGGCATCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
50 3 0.03
51 102 0.97
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (51 bp):
GTGTGGTACTAAGTGCAGGCCACTATGTGTAAAAGATAGCTTTGATCACAA
Found at i:32375610 original size:24 final size:22
Alignment explanation
Indices: 32375567--32375610 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
32375557 GTTAGAGTGT
32375567 AAATATGAAAAATTTGAAGGAC
1 AAATATGAAAAATTTGAAGGAC
*
32375589 AAATAGTGAAAATATTTTAAGG
1 AAATA-TGAAAA-ATTTGAAGG
32375611 GTGGAATGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 6 0.32
24 8 0.42
ACGTcount: A:0.52, C:0.02, G:0.18, T:0.27
Consensus pattern (22 bp):
AAATATGAAAAATTTGAAGGAC
Found at i:32377651 original size:32 final size:33
Alignment explanation
Indices: 32377572--32377684 Score: 158
Period size: 33 Copynumber: 3.5 Consensus size: 33
32377562 TACCTAAATG
* *
32377572 GTACAACTGGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
*
32377605 GTACAACTTGAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
* *
32377638 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTACACTTTGTGT
32377670 GTACAA-TGTGAAAAG
1 GTACAACT-TGAAAAG
32377685 TGGTAGATTC
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
32 30 0.42
33 42 0.58
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.26
Consensus pattern (33 bp):
GTACAACTTGAAAAGGAAATGTACACTTTGTGT
Found at i:32377714 original size:31 final size:31
Alignment explanation
Indices: 32377677--32377824 Score: 188
Period size: 31 Copynumber: 4.8 Consensus size: 31
32377667 TGTGTACAAT
* * * *
32377677 GTGAAAAGTGGTAGATTCGGCTACCTAATTA
1 GTGAAAAGTGGTAGCTCCGGCTACCTGATCA
*
32377708 GTGAAAAGTGGTAGCTCCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTCCGGCTACCTGATCA
*
32377739 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTCCGGCTACCTGATCA
* *
32377770 GTGAAAAGTGATAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTCCGGCTACCTGATCA
* * * *
32377801 GTGAATATTGGTATCTTCGGCTAC
1 GTGAAAAGTGGTAGCTCCGGCTAC
32377825 AAGTGACAAG
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 105 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTCCGGCTACCTGATCA
Found at i:32377977 original size:27 final size:27
Alignment explanation
Indices: 32377914--32377978 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
32377904 TAGTTGAACT
* *
32377914 ATGGCAAAGCGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
32377941 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
32377968 ATGGCAAAGTG
1 ATGGCAAAGTG
32377979 TTCAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:32378043 original size:56 final size:56
Alignment explanation
Indices: 32377967--32378091 Score: 216
Period size: 56 Copynumber: 2.2 Consensus size: 56
32377957 GTGTGCCAAA
*
32377967 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGATGGATAAGACCATAGTTGGA-C
1 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATAGTT-GATC
*
32378023 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATGGTTGATC
1 CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATAGTTGATC
32378079 CATGGCAAAGTGT
1 CATGGCAAAGTGT
32378092 GAAACGTAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
55 2 0.03
56 64 0.97
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (56 bp):
CATGGCAAAGTGTTCAGTGATCAGTGATGAATTGACGGATAAGACCATAGTTGATC
Found at i:32383196 original size:30 final size:30
Alignment explanation
Indices: 32383160--32383219 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
32383150 TTCCCGAACC
*
32383160 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
32383190 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
32383220 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:32394097 original size:28 final size:28
Alignment explanation
Indices: 32394066--32394122 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
32394056 AATAAGAATG
32394066 GTGGAGAATCAAGGGTGTGAATGATTCA
1 GTGGAGAATCAAGGGTGTGAATGATTCA
32394094 GTGGAGAATCAAGGGTGTGAATGATTCA
1 GTGGAGAATCAAGGGTGTGAATGATTCA
32394122 G
1 G
32394123 CTAAGTGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.32, C:0.07, G:0.37, T:0.25
Consensus pattern (28 bp):
GTGGAGAATCAAGGGTGTGAATGATTCA
Found at i:32412304 original size:33 final size:33
Alignment explanation
Indices: 32412267--32412334 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
32412257 AATAGAAAGT
32412267 AAATGTTTGGGACCTAAATTGTAAAAGAGTTTG
1 AAATGTTTGGGACCTAAATTGTAAAAGAGTTTG
32412300 AAATGTTTGGGACCTAAATTGTAAAAGAGTTTG
1 AAATGTTTGGGACCTAAATTGTAAAAGAGTTTG
32412333 AA
1 AA
32412335 GTTAGAGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.38, C:0.06, G:0.24, T:0.32
Consensus pattern (33 bp):
AAATGTTTGGGACCTAAATTGTAAAAGAGTTTG
Found at i:32415745 original size:14 final size:14
Alignment explanation
Indices: 32415726--32415765 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
32415716 ATAAGCAAAC
32415726 CAAACCAAACCCAA
1 CAAACCAAACCCAA
*
32415740 CAAACCAAGCCCAA
1 CAAACCAAACCCAA
*
32415754 CTAAACTAAACC
1 C-AAACCAAACC
32415766 TAACCTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.53, C:0.40, G:0.03, T:0.05
Consensus pattern (14 bp):
CAAACCAAACCCAA
Found at i:32416816 original size:3 final size:3
Alignment explanation
Indices: 32416808--32416893 Score: 118
Period size: 3 Copynumber: 28.3 Consensus size: 3
32416798 TAATTTTAAC
* * * * *
32416808 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATTT ATT ATC ATC ATC ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
32416854 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32416894 AACTGATTTA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
3 75 0.96
4 3 0.04
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32417026 original size:44 final size:44
Alignment explanation
Indices: 32416943--32417026 Score: 102
Period size: 44 Copynumber: 1.9 Consensus size: 44
32416933 ATTTATTTAT
* *
32416943 TTATTATTATTTTTTATATATTGGTTTTATTTTTACTTTTACCC
1 TTATTATTATATTTTATATATTGGTTTTATTTATACTTTTACCC
32416987 TTATTATTATCATTTTAT-TATCT-G-TTTATTTATATCTTTT
1 TTATTATTAT-ATTTTATATAT-TGGTTTTATTTATA-CTTTT
32417027 TATACTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
43 9 0.26
44 19 0.54
45 7 0.20
ACGTcount: A:0.21, C:0.08, G:0.04, T:0.67
Consensus pattern (44 bp):
TTATTATTATATTTTATATATTGGTTTTATTTATACTTTTACCC
Found at i:32422056 original size:2 final size:2
Alignment explanation
Indices: 32422051--32422087 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
32422041 TATATATATA
32422051 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
32422088 ATTCGAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:32428085 original size:44 final size:45
Alignment explanation
Indices: 32428031--32428300 Score: 206
Period size: 45 Copynumber: 5.8 Consensus size: 45
32428021 GAATCCAAAA
* * * *
32428031 ATCTCATCTCCCTGAAGTAGCAGTGGAACAGATTGAAG-TTGTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAG
* * * * *
32428075 ATCTTATCTCCTTGAAGTTGCAGTGGAGTAGATCGAAGATGGTGG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAG
* * ** *
32428120 ATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACTAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAG
* * * * *
32428165 -CCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGAAAG-CG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAG
* * *
32428208 AATCTTAGT-TCCCTGAAGTTGCAGTGGAACAGATTAAAGTTACAAATTATGGCAG
1 -ATCTTA-TCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AGA-TA--GTAG
*
32428263 ATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
32428301 CCACCAACTT
Statistics
Matches: 174, Mismatches: 37, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 65 0.37
45 66 0.38
46 1 0.01
48 2 0.01
49 1 0.01
50 1 0.01
51 3 0.02
52 1 0.01
53 1 0.01
54 31 0.18
55 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGTAG
Found at i:32428136 original size:45 final size:44
Alignment explanation
Indices: 32428031--32428201 Score: 157
Period size: 44 Copynumber: 3.9 Consensus size: 44
32428021 GAATCCAAAA
* * * * *
32428031 ATCTCATCTCCCTGAAGTAGCAGTGGAACAGATTGAAGTTGTAG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTGGTAG
* * *
32428075 ATCTTATC-TCCTTGAAGTTGCAGTGGAGTAGATCGAAGATGGTGG
1 ATCTTATCTTCC-TGAAGTTGCAGTGGAGCAGATTGAAG-TGGTAG
* ***
32428120 ATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACTAG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG-TGGTAG
* * * *
32428165 -CCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG
1 ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAG
32428202 AAAGCGAATC
Statistics
Matches: 103, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
43 2 0.02
44 61 0.59
45 37 0.36
46 3 0.03
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
ATCTTATCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGTGGTAG
Found at i:32428202 original size:89 final size:89
Alignment explanation
Indices: 32428039--32428242 Score: 218
Period size: 89 Copynumber: 2.3 Consensus size: 89
32428029 AAATCTCATC
*** * * *
32428039 TCCCTGAAG-TAGCAGTGGAACAGATTGAAG-TTGTAGATCTTATCTCCTTGAAGTTGCAGTGGA
1 TCCCTGAAGTTA-CAGTGGAACAGATTGAAGCCACTAG-CCTTATCTCCCTAAAGTTGCAGTGGA
* ** * *
32428102 GTAGATCGAAGATGGTGGATCTTA-T
64 GCAGATCGAAGAAAGCGAATCTTAGT
* *
32428127 CTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTAAAGTTGCAGTGGAG
1 -TCCCTGAAGTTACAGTGGAACAGATTGAAGCCACTAGCCTTATCTCCCTAAAGTTGCAGTGGAG
32428192 CAGA-CTGAAGAAAGCGAATCTTAGT
65 CAGATC-GAAGAAAGCGAATCTTAGT
*
32428217 TCCCTGAAGTTGCAGTGGAACAGATT
1 TCCCTGAAGTTACAGTGGAACAGATT
32428243 AAAGTTACAA
Statistics
Matches: 95, Mismatches: 16, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
88 1 0.01
89 88 0.93
90 6 0.06
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.27
Consensus pattern (89 bp):
TCCCTGAAGTTACAGTGGAACAGATTGAAGCCACTAGCCTTATCTCCCTAAAGTTGCAGTGGAGC
AGATCGAAGAAAGCGAATCTTAGT
Found at i:32428381 original size:143 final size:143
Alignment explanation
Indices: 32428113--32428719 Score: 742
Period size: 143 Copynumber: 4.3 Consensus size: 143
32428103 TAGATCGAAG
* * * *
32428113 ATGGTGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACTAGCCTTATCTCCCTA
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
** * * *
32428178 AAGTTGCAGTGGAGCAGACTGAAGAAAGCGAATCTTAGTTCCCT-GAAGTTGCAGTGGAACAGAT
66 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCA-TTGCAGTGGAACAGAT
*
32428242 TAAAGTTACAAATT
130 TAAAGCTACAAATT
* * * * * *
32428256 ATGGCAGATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGCCACCAACTTTATCTTCCTG
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
* * * * *
32428321 AAGTTACAGCAGAGCAAATTAAAGACAGTC-AATCTTATTTCCCTGGCATTGCAGTAGAACAGAT
66 AAGTTGCAGCAGAGCAGACTGAAGACAG-CGAATCTTATTTCCCTGGCATTGCAGTGGAACAGAT
*
32428385 TGAAGCTACAAATT
130 TAAAGCTACAAATT
* * *
32428399 ATGGCGGATCTTATCTTCCTGAAGTTGCAATAGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
* *
32428464 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGACATTGTAGTGGAACAGATT
66 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATT
32428529 AAAGCTACAAATT
131 AAAGCTACAAATT
* *
32428542 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGTAGATTGAAGCCATCAGCCTTATCTTCCTG
1 ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
* * * * * ** * *
32428607 AAGTTGCAGCGGAGTAGACTGAAGATAGCGGATCTTATTTTCCT-AAAGTTACAGTGGAGCAGAT
66 AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCA-TTGCAGTGGAACAGAT
* *
32428671 TGAAGCTACAAGTT
130 TAAAGCTACAAATT
* * *
32428685 A---CAGATCTTATC-TCTCTAAAGTTACAGTAGAGCAG
1 ATGGCGGATCTTATCTTC-CTGAAGTTACAGTGGAGCAG
32428720 GTCAAAGCCA
Statistics
Matches: 402, Mismatches: 57, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
139 2 0.00
140 27 0.07
142 3 0.01
143 367 0.91
144 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (143 bp):
ATGGCGGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGCCACCAGCCTTATCTTCCTG
AAGTTGCAGCAGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCATTGCAGTGGAACAGATT
AAAGCTACAAATT
Found at i:32428427 original size:54 final size:49
Alignment explanation
Indices: 32428118--32428719 Score: 210
Period size: 44 Copynumber: 12.7 Consensus size: 49
32428108 CGAAGATGGT
* * *
32428118 GGATCTTATCTTCCTGAAGTTACAGTGGAGCAGATTGAAGC-CACTAGC
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
* * * *
32428166 ----CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAG-A-A--AGC
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
* * * * * *
32428207 GAATCTTAGT-TCCCTGAAGTTGCAGTGGAACAGATTAAAGTTACAAATTATGGC
1 GGATCTTA-TCTTCCTGAAGTTGCAGTAGAGCAGATTGAAG---CACATTA--GC
* * * * ** *
32428261 AGATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTGAAGC-CACCAAC
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
* * * * *
32428309 ---T-TTATCTTCCTGAAGTTACAGCAGAGCAAATTAAAG-ACAGT--C
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
* * *
32428351 -AATCTTAT-TTCCCTGGCA-TTGCAGTAGAACAGATTGAAGCTACAAATTATGGC
1 GGATCTTATCTT-CCT-GAAGTTGCAGTAGAGCAGATTGAAGC-AC--ATTA--GC
* **
32428404 GGATCTTATCTTCCTGAAGTTGCAATAGAGCAGATTGAAGC-CACCAGC
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
* *
32428452 ----CTTATCTTCCTGAAGTTGCAGCAGAGCAGACTGAAG-AC---AGC
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
* * * * *
32428493 GAATCTTAT-TTCCCTGACA-TTGTAGTGGAACAGATTAAAGCTACAAATTATGGC
1 GGATCTTATCTT-CCTGA-AGTTGCAGTAGAGCAGATTGAAGC-AC--ATTA--GC
* * * *
32428547 GGATCTTATCTTCCTGAAGTTACAGTGGAGTAGATTGAAGC-CATCAGC
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
** * *
32428595 ----CTTATCTTCCTGAAGTTGCAGCGGAGTAGACTGAAG---A-TAGC
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
* * * *
32428636 GGATCTTATTTTCCTAAAGTTACAGTGGAGCAGATTGAAGCTACAAGTTA-C
1 GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGC-AC-A-TTAGC
* * *
32428687 AGATCTTATC-TCTCTAAAGTTACAGTAGAGCAG
1 GGATCTTATCTTC-CTGAAGTTGCAGTAGAGCAG
32428720 GTCAAAGCCA
Statistics
Matches: 424, Mismatches: 67, Indels: 123
0.69 0.11 0.20
Matches are distributed among these distances:
41 9 0.02
42 2 0.00
43 1 0.00
44 135 0.32
45 109 0.26
46 4 0.01
47 4 0.01
48 5 0.01
49 3 0.01
50 11 0.03
51 29 0.07
52 6 0.01
53 5 0.01
54 97 0.23
55 4 0.01
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (49 bp):
GGATCTTATCTTCCTGAAGTTGCAGTAGAGCAGATTGAAGCACATTAGC
Found at i:32428844 original size:95 final size:95
Alignment explanation
Indices: 32428603--32428855 Score: 226
Period size: 95 Copynumber: 2.7 Consensus size: 95
32428593 GCCTTATCTT
*** * *
32428603 CCTGAAGTTGCAGCGGAGTAGACTGAAGA-TAGCGGATCTTATTT-TCCTAAAGTTACAGTGGAG
1 CCTGAAGTTGCAGCGGAGTAGACTGAA-ACTATAAG-TCTTATTTCT-CTGAAGTTGCAGTGGAG
* * *
32428666 CAGATTGAAGCTACAAGTTACAGATCTTATCTC
63 CAGATTGAAGCTACAAGTTACAAATCTCATATC
* * * ** * * * * * ** *
32428699 TCTAAAGTTACAGTAGAGCAG-GTCAAAGCCATAA-ACTTTATCACTTTGAAGTTGCAGTGGAGC
1 CCTGAAGTTGCAGCGGAGTAGACTGAAA-CTATAAGTC-TTATTTCTCTGAAGTTGCAGTGGAGC
32428762 AGATTGAAGCTACAAGTTACAAATCTCATATC
64 AGATTGAAGCTACAAGTTACAAATCTCATATC
* *
32428794 CCTGAAGTTGCAGCGGAGTAGATTGAAACTATAAGTCTTATTTCTCTGAAGTTGCGGTGGAG
1 CCTGAAGTTGCAGCGGAGTAGACTGAAACTATAAGTCTTATTTCTCTGAAGTTGCAGTGGAG
32428856 TGGATCAAAG
Statistics
Matches: 116, Mismatches: 35, Indels: 13
0.71 0.21 0.08
Matches are distributed among these distances:
94 2 0.02
95 92 0.79
96 22 0.19
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.28
Consensus pattern (95 bp):
CCTGAAGTTGCAGCGGAGTAGACTGAAACTATAAGTCTTATTTCTCTGAAGTTGCAGTGGAGCAG
ATTGAAGCTACAAGTTACAAATCTCATATC
Found at i:32429070 original size:14 final size:14
Alignment explanation
Indices: 32429051--32429084 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32429041 TAAGCAAACC
32429051 CAAACCAAACCCAA
1 CAAACCAAACCCAA
*
32429065 CAAACCAAGCCCAA
1 CAAACCAAACCCAA
32429079 CTAAAC
1 C-AAAC
32429085 TAAATCTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.53, C:0.41, G:0.03, T:0.03
Consensus pattern (14 bp):
CAAACCAAACCCAA
Found at i:32430150 original size:3 final size:3
Alignment explanation
Indices: 32430142--32430214 Score: 94
Period size: 3 Copynumber: 24.7 Consensus size: 3
32430132 TAATTTTAAC
* * * *
32430142 ATT ATT ATT ATT ATT -TT ACT ATT ATT ATT TTT ATT ATT AAT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
32430189 ATC ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
32430215 AATACTATTA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:32431859 original size:13 final size:13
Alignment explanation
Indices: 32431841--32431865 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32431831 ACAAACTTTT
32431841 TATTTTTAATATA
1 TATTTTTAATATA
32431854 TATTTTTAATAT
1 TATTTTTAATAT
32431866 TTTATCTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTTAATATA
Found at i:32434871 original size:27 final size:27
Alignment explanation
Indices: 32434820--32434873 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
32434810 GACGATAGTG
* *
32434820 ACGACGACAATGATGAGGCTGGCGGCA
1 ACGACGACAATGATGAGGATAGCGGCA
* *
32434847 ACGACGACAATGATTATGATAGCGGCA
1 ACGACGACAATGATGAGGATAGCGGCA
32434874 GTGACAATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.31, T:0.15
Consensus pattern (27 bp):
ACGACGACAATGATGAGGATAGCGGCA
Found at i:32434988 original size:18 final size:18
Alignment explanation
Indices: 32434939--32434990 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
32434929 CAGAGACAAC
32434939 GACAACAATGACGATGGT
1 GACAACAATGACGATGGT
* * **
32434957 GGCAATAACAACGA-GGAT
1 GACAACAATGACGATGG-T
32434975 GACAACAATGACGATG
1 GACAACAATGACGATG
32434991 ACAACTATGT
Statistics
Matches: 24, Mismatches: 8, Indels: 3
0.69 0.23 0.09
Matches are distributed among these distances:
17 2 0.08
18 21 0.88
19 1 0.04
ACGTcount: A:0.42, C:0.17, G:0.27, T:0.13
Consensus pattern (18 bp):
GACAACAATGACGATGGT
Found at i:32438917 original size:2 final size:2
Alignment explanation
Indices: 32438910--32438956 Score: 85
Period size: 2 Copynumber: 23.0 Consensus size: 2
32438900 GAAAACTTAA
32438910 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32438952 CAT AT
1 -AT AT
32438957 GCACTTACTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 42 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32441751 original size:2 final size:2
Alignment explanation
Indices: 32441746--32441788 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
32441736 TAAAATCTAA
32441746 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32441788 A
1 A
32441789 AATTGATTGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:32444189 original size:12 final size:12
Alignment explanation
Indices: 32444172--32444206 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
32444162 TGGATTTGGA
32444172 CGACAGTGACAG
1 CGACAGTGACAG
*
32444184 CGACAGCGACAG
1 CGACAGTGACAG
*
32444196 CGACAATGACA
1 CGACAGTGACA
32444207 ATGACGACGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.37, C:0.29, G:0.29, T:0.06
Consensus pattern (12 bp):
CGACAGTGACAG
Found at i:32445538 original size:20 final size:20
Alignment explanation
Indices: 32445513--32445585 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
32445503 TCTCTCTCAA
32445513 CAAAAATTACAAATAATTTT
1 CAAAAATTACAAATAATTTT
32445533 CAAAAA-TACAAAGTAATTTT
1 CAAAAATTACAAA-TAATTTT
* *
32445553 -TAAAATTCCAAAT-ATTTAT
1 CAAAAATTACAAATAATTT-T
* *
32445572 AAAAAATTTCAAAT
1 CAAAAATTACAAAT
32445586 TTTATATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
18 4 0.09
19 12 0.27
20 29 0.64
ACGTcount: A:0.55, C:0.10, G:0.01, T:0.34
Consensus pattern (20 bp):
CAAAAATTACAAATAATTTT
Found at i:32445576 original size:19 final size:19
Alignment explanation
Indices: 32445554--32445591 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
32445544 AGTAATTTTT
32445554 AAAATTCCAAATATTTATAA
1 AAAATTCCAAAT-TTTATAA
*
32445574 AAAATTTCAAATTTTATA
1 AAAATTCCAAATTTTATA
32445592 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTCCAAATTTTATAA
Found at i:32447689 original size:40 final size:40
Alignment explanation
Indices: 32447634--32447729 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 40
32447624 GGTCAACCCA
* *
32447634 TGTGGCCCACACGGCCTAACACACGACCTACACATGCTTG
1 TGTGGCCCACACGGCCTAACACACAACATACACATGCTTG
** **
32447674 TGTGGCCCAGTCGGCCTAACACACAACATACACATGCCCG
1 TGTGGCCCACACGGCCTAACACACAACATACACATGCTTG
* *
32447714 TGTGGTCCACATGGCC
1 TGTGGCCCACACGGCC
32447730 CAAATAGCCT
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.24, C:0.36, G:0.22, T:0.18
Consensus pattern (40 bp):
TGTGGCCCACACGGCCTAACACACAACATACACATGCTTG
Found at i:32449979 original size:2 final size:2
Alignment explanation
Indices: 32449972--32450013 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
32449962 CCCAAAACCT
32449972 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
32450014 ACTCACATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Done.