Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 112 of 335
Found at i:34536555 original size:10 final size:10
Alignment explanation
Indices: 34536528--34536586 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
34536518 TTAAATTCTA
34536528 AAAGATAAAT
1 AAAGATAAAT
*
34536538 ACCA-ATAAAT
1 A-AAGATAAAT
*
34536548 AAAGATAATT
1 AAAGATAAAT
34536558 AAAGATAAAT
1 AAAGATAAAT
*
34536568 AAGGATAAAT
1 AAAGATAAAT
34536578 AAAGATAAA
1 AAAGATAAA
34536587 AGCTAGGACA
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
9 1 0.02
10 39 0.95
11 1 0.02
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.20
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:34536562 original size:30 final size:30
Alignment explanation
Indices: 34536528--34536585 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
34536518 TTAAATTCTA
*
34536528 AAAGATAAATACCAATAAATAAAGATAATT
1 AAAGATAAATAACAATAAATAAAGATAATT
**
34536558 AAAGATAAATAAGGATAAATAAAGATAA
1 AAAGATAAATAACAATAAATAAAGATAA
34536586 AAGCTAGGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.21
Consensus pattern (30 bp):
AAAGATAAATAACAATAAATAAAGATAATT
Found at i:34536599 original size:22 final size:22
Alignment explanation
Indices: 34536569--34536613 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
34536559 AAGATAAATA
*
34536569 AGGATAAATAAAGATAAAAGCT
1 AGGACAAATAAAGATAAAAGCT
34536591 AGGACAAATAAAGATAAAAGCT
1 AGGACAAATAAAGATAAAAGCT
34536613 A
1 A
34536614 AAATTAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.60, C:0.07, G:0.18, T:0.16
Consensus pattern (22 bp):
AGGACAAATAAAGATAAAAGCT
Found at i:34538599 original size:20 final size:19
Alignment explanation
Indices: 34538574--34538637 Score: 64
Period size: 20 Copynumber: 3.5 Consensus size: 19
34538564 ATATCCAAAC
*
34538574 AAAATAAAGTAATAATTAAT-
1 AAAATAAAATAATAA--AATA
34538594 AAAATAAAATAATAAAATA
1 AAAATAAAATAATAAAATA
*
34538613 AAAAT-AAA-AAT-AAAGA
1 AAAATAAAATAATAAAATA
34538629 AAAATAAAA
1 AAAATAAAA
34538638 ATTAGGTTGC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 9 0.22
17 6 0.15
18 6 0.15
19 5 0.12
20 14 0.35
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (19 bp):
AAAATAAAATAATAAAATA
Found at i:34540038 original size:33 final size:33
Alignment explanation
Indices: 34539996--34540073 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
34539986 TCGTTTCTTT
* **
34539996 TTGGAAATCAAGAGTTTG-TCATAGTATTTGTTG
1 TTGGAAATCAAGAGTTTGCT-ATAGTATCTACTG
* *
34540029 TTGGAAATCAACAGTTTGCTATTGTATCTACTG
1 TTGGAAATCAAGAGTTTGCTATAGTATCTACTG
34540062 TTGGAAATCAAG
1 TTGGAAATCAAG
34540074 CACATTAGCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 37 0.97
34 1 0.03
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.38
Consensus pattern (33 bp):
TTGGAAATCAAGAGTTTGCTATAGTATCTACTG
Found at i:34542397 original size:10 final size:10
Alignment explanation
Indices: 34542370--34542450 Score: 76
Period size: 10 Copynumber: 7.9 Consensus size: 10
34542360 TTAAATTCTA
34542370 AAAGATAAAT
1 AAAGATAAAT
*
34542380 ACAA-ATAATT
1 A-AAGATAAAT
*
34542390 AAAGATAATT
1 AAAGATAAAT
34542400 AAAGATAAAT
1 AAAGATAAAT
*
34542410 AAGGATAAAT
1 AAAGATAAAT
34542420 AAAGATAAA-
1 AAAGATAAAT
*
34542429 AGCTAGGATAAAT
1 A---AAGATAAAT
34542442 AAAGATAAA
1 AAAGATAAA
34542451 AGCTAAAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
9 3 0.05
10 46 0.78
11 2 0.03
12 7 0.12
13 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.12, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:34542439 original size:22 final size:22
Alignment explanation
Indices: 34542411--34542455 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
34542401 AAGATAAATA
34542411 AGGATAAATAAAGATAAAAGCT
1 AGGATAAATAAAGATAAAAGCT
34542433 AGGATAAATAAAGATAAAAGCT
1 AGGATAAATAAAGATAAAAGCT
34542455 A
1 A
34542456 AAATTAAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.04, G:0.18, T:0.18
Consensus pattern (22 bp):
AGGATAAATAAAGATAAAAGCT
Found at i:34558513 original size:23 final size:23
Alignment explanation
Indices: 34558487--34558550 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
34558477 ATAGCACTTA
*
34558487 AAACACTTCAATTTATAACATTT
1 AAACACTTCAATTTATAACAATT
* * *
34558510 AAACACCTCCATTTACAACAATT
1 AAACACTTCAATTTATAACAATT
*
34558533 AAACAATTCAAATTTATA
1 AAACACTTC-AATTTATA
34558551 GTCTTTAGTC
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
23 26 0.81
24 6 0.19
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (23 bp):
AAACACTTCAATTTATAACAATT
Found at i:34559511 original size:113 final size:113
Alignment explanation
Indices: 34559306--34559520 Score: 317
Period size: 113 Copynumber: 1.9 Consensus size: 113
34559296 AAATCATCCT
*
34559306 ATTTTTCTTCCATTTAAACATCAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTTCT
1 ATTTTTCTTCCAATTAAACATCAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTTCT
* * * *
34559371 CTTAATTCAACAGCAACGAACAACAGCTATATTGAGCCTTAATCATAA
66 CCTAATTCAACAACAACAAACAACAGCTATACTGAGCCTTAATCATAA
* *
34559419 ATTTTTCTT-CAATTACAACATGC-ACAGGCAGCAGCAACTTATAGCAATTTAAATTATTAATTT
1 ATTTTTCTTCCAATTA-AACAT-CAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTT
* *
34559482 CTCCTCATTCAACAACAACAAACAGCAGCTATACTGAGC
64 CTCCTAATTCAACAACAACAAACAACAGCTATACTGAGC
34559521 ACTTTAACTA
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
112 5 0.05
113 85 0.93
114 1 0.01
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.31
Consensus pattern (113 bp):
ATTTTTCTTCCAATTAAACATCAACAGGCAGCAACAACATATAGCAATTTAAATTATTAATTTCT
CCTAATTCAACAACAACAAACAACAGCTATACTGAGCCTTAATCATAA
Found at i:34559527 original size:57 final size:57
Alignment explanation
Indices: 34559348--34559527 Score: 147
Period size: 57 Copynumber: 3.2 Consensus size: 57
34559338 AACAACATAT
* * * *
34559348 AGCAATTTAAATTATTAATTTCTCTTAATTCAACAGCAACGAACAACAGCTATATTG
1 AGCAATTTAAATTATTAATTTCTCTTCATTCAACAGCAACAAACAGCAGCTATACTG
* * * * ** *
34559405 AGC--CTT-AATCATAAATTTTTCTTCAATTACAACATGC-ACAGGCAGCAGC-A-ACTTAT
1 AGCAATTTAAATTATTAATTTCTCTTC-ATT-CAACA-GCAACAAACAGCAGCTATAC-T-G
* *
34559461 AGCAATTTAAATTATTAATTTCTCCTCATTCAACAACAACAAACAGCAGCTATACTG
1 AGCAATTTAAATTATTAATTTCTCTTCATTCAACAGCAACAAACAGCAGCTATACTG
*
34559518 AGCACTTTAA
1 AGCAATTTAA
34559528 CTAACTGAAA
Statistics
Matches: 91, Mismatches: 21, Indels: 22
0.68 0.16 0.16
Matches are distributed among these distances:
54 15 0.16
55 7 0.08
56 17 0.19
57 29 0.32
58 7 0.08
59 16 0.18
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (57 bp):
AGCAATTTAAATTATTAATTTCTCTTCATTCAACAGCAACAAACAGCAGCTATACTG
Found at i:34559986 original size:14 final size:14
Alignment explanation
Indices: 34559957--34559985 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
34559947 TTTGTTCTTG
34559957 TTCTTGTTCTTTTT
1 TTCTTGTTCTTTTT
34559971 TTCTT-TTCTTTTT
1 TTCTTGTTCTTTTT
34559984 TT
1 TT
34559986 TGTTTAATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (14 bp):
TTCTTGTTCTTTTT
Found at i:34561516 original size:17 final size:17
Alignment explanation
Indices: 34561494--34561526 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
34561484 TATAACATAT
*
34561494 AATATAAATATATTTAC
1 AATATAAATAAATTTAC
34561511 AATATAAATAAATTTA
1 AATATAAATAAATTTA
34561527 TACGTTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AATATAAATAAATTTAC
Found at i:34564506 original size:2 final size:2
Alignment explanation
Indices: 34564499--34564537 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
34564489 ATAAAAAGAA
34564499 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34564538 AACCTTTTGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:34578008 original size:20 final size:20
Alignment explanation
Indices: 34577979--34578016 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
34577969 GCGTTTGCCT
*
34577979 CCCTCCACATGGGCGTGTGC
1 CCCTCCACATAGGCGTGTGC
*
34577999 CCCTCTACATAGGCGTGT
1 CCCTCCACATAGGCGTGT
34578017 TGACCCCCAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.37, G:0.26, T:0.24
Consensus pattern (20 bp):
CCCTCCACATAGGCGTGTGC
Found at i:34581221 original size:25 final size:27
Alignment explanation
Indices: 34581184--34581236 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
34581174 TCAAACATGC
34581184 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
34581210 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
34581236 A
1 A
34581237 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:34582759 original size:26 final size:26
Alignment explanation
Indices: 34582723--34582858 Score: 236
Period size: 26 Copynumber: 5.2 Consensus size: 26
34582713 CATGATATTC
34582723 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
34582749 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
34582775 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
34582801 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
34582827 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
34582853 TTATCA
1 TTATCA
34582859 ATTTGTATCA
Statistics
Matches: 104, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 104 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:34584608 original size:43 final size:42
Alignment explanation
Indices: 34584511--34584620 Score: 125
Period size: 42 Copynumber: 2.6 Consensus size: 42
34584501 AATTTGAAAT
34584511 TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATATGA
1 TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATATGA
* * * * *
34584553 TTTCGTGTAAGACCCTGTTTGGGACAGT-GGCA-CTGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACA-TCGGCATC-G-TATATGA
*
34584596 TTACATGTAAGACCACGTCTGGGAC
1 TTACATGTAAGACCATGTCTGGGAC
34584621 GTTGGCATTG
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.02
42 27 0.49
43 27 0.49
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATCGGCATCGTATATGA
Found at i:34584627 original size:43 final size:42
Alignment explanation
Indices: 34584472--34584628 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 42
34584462 TGAGTTATCG
* *
34584472 TGTAAGACCACGTCTGGGATGTTGGCATCA-ATTTGAAATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATGATATTTG--A-TTACA
* * * * * *
34584516 TGTAAGACCATGTCTGGGACATCGGCATCG-TATATGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCAT-GATATTTGATTACA
*
34584558 TGTAAGACC-CTGTTTGGGACAG-TGGCACTGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCA-TGATATTTGATTACA
34584601 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
34584629 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 27 0.30
43 33 0.37
44 25 0.28
45 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATGATATTTGATTACA
Found at i:34585299 original size:13 final size:13
Alignment explanation
Indices: 34585281--34585325 Score: 69
Period size: 13 Copynumber: 3.7 Consensus size: 13
34585271 ATTTGGTAAG
34585281 TTAGTTATGTGAA
1 TTAGTTATGTGAA
34585294 TTAGTTATG-G--
1 TTAGTTATGTGAA
34585304 TTAGTTATGTGAA
1 TTAGTTATGTGAA
34585317 TTAGTTATG
1 TTAGTTATG
34585326 GAAATGGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 9 0.31
11 1 0.03
12 1 0.03
13 18 0.62
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (13 bp):
TTAGTTATGTGAA
Found at i:34585306 original size:23 final size:23
Alignment explanation
Indices: 34585280--34585326 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
34585270 AATTTGGTAA
34585280 GTTAGTTATGTGAATTAGTTATG
1 GTTAGTTATGTGAATTAGTTATG
34585303 GTTAGTTATGTGAATTAGTTATG
1 GTTAGTTATGTGAATTAGTTATG
34585326 G
1 G
34585327 AAATGGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (23 bp):
GTTAGTTATGTGAATTAGTTATG
Found at i:34586950 original size:13 final size:12
Alignment explanation
Indices: 34586932--34586977 Score: 53
Period size: 13 Copynumber: 3.9 Consensus size: 12
34586922 ATCTTTACTC
34586932 CACTAAACCACT
1 CACTAAACCACT
34586944 ACACTAAACCACT
1 -CACTAAACCACT
34586957 C-C--AACCACT
1 CACTAAACCACT
34586966 CCACTAAACCAC
1 -CACTAAACCAC
34586978 CCCAACCACC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
9 7 0.24
10 1 0.03
11 2 0.07
12 1 0.03
13 18 0.62
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (12 bp):
CACTAAACCACT
Found at i:34586963 original size:22 final size:22
Alignment explanation
Indices: 34586937--34587003 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
34586927 TACTCCACTA
*
34586937 AACCACTACACTAAACCACTCC
1 AACCACTCCACTAAACCACTCC
*
34586959 AACCACTCCACTAAACCACCCC
1 AACCACTCCACTAAACCACTCC
*
34586981 AACCACCCCACTAAACCACTCC
1 AACCACTCCACTAAACCACTCC
34587003 A
1 A
34587004 CTTGCCTACA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.39, C:0.51, G:0.00, T:0.10
Consensus pattern (22 bp):
AACCACTCCACTAAACCACTCC
Found at i:34587406 original size:19 final size:18
Alignment explanation
Indices: 34587369--34587410 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
34587359 GGAGAGAGAG
*
34587369 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
34587387 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
34587406 TTATT
1 TTATT
34587411 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:34587469 original size:33 final size:39
Alignment explanation
Indices: 34587395--34587476 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
34587385 TATTATTTTC
*
34587395 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
34587434 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
34587467 TATTACTATT
1 TATTACTATT
34587477 TGGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:34587506 original size:23 final size:24
Alignment explanation
Indices: 34587422--34587506 Score: 59
Period size: 23 Copynumber: 3.6 Consensus size: 24
34587412 CTAATACCAC
* *
34587422 TATTATCATCATTATTACTATTA-
1 TATTATTATCATTTTTACTATTAT
* * * *
34587445 TATTATAATACCTTTTCATTATTAT
1 TATTATTAT-CATTTTTACTATTAT
* **
34587470 TACTATT-TGGTTTTTACTATTAT
1 TATTATTATCATTTTTACTATTAT
34587493 TATTATTAT-ATTTT
1 TATTATTATCATTTT
34587507 CTTTTTTTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
23 29 0.63
24 12 0.26
25 5 0.11
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.59
Consensus pattern (24 bp):
TATTATTATCATTTTTACTATTAT
Found at i:34597197 original size:206 final size:206
Alignment explanation
Indices: 34596836--34597390 Score: 968
Period size: 206 Copynumber: 2.7 Consensus size: 206
34596826 GCAAATCTGG
*
34596836 CTAAAGC-AGATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* *
34596900 GATTTGGCTTTCGCGTGCTTACACTAAAGCATGTCTAAGATGATTTGGCATCTCTGTATTGTAAG
66 GATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTAAG
* *
34596965 AGAACAAGTCAAAGTCTGGCATCTCCATTTTGACGGAGAGCAGATACATAGCAGATCTGGACTTC
131 AGAACAAGTCGAAGTCTGGCATCTCCATTTTGACAGAGAGCAGATACATAGCAGATCTGGACTTC
34597030 AGATGTTTATA
196 AGATGTTTATA
*
34597041 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
*
34597106 GATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTTAG
66 GATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTAAG
*
34597171 AGAACAAGTCGAAGTCTGGCATCTCCATTTTGACAGAGAGCAGATACATAGCAGATCTGGCCTTC
131 AGAACAAGTCGAAGTCTGGCATCTCCATTTTGACAGAGAGCAGATACATAGCAGATCTGGACTTC
*
34597236 GGATGTTTATA
196 AGATGTTTATA
*
34597247 CTAAAGCAAGATCCAAGATGATTTGGCATCCTTATGCTTACAAGGAGCAAATCGAAGACATAGCT
1 CTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
* * *
34597312 GATTTGGTTTTCGCGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTCAG
66 GATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTAAG
* *
34597377 GGAACAAATCGAAG
131 AGAACAAGTCGAAG
34597391 AAGCAGATTT
Statistics
Matches: 333, Mismatches: 16, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
205 6 0.02
206 327 0.98
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (206 bp):
CTAAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGCT
GATTTGGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGTAAG
AGAACAAGTCGAAGTCTGGCATCTCCATTTTGACAGAGAGCAGATACATAGCAGATCTGGACTTC
AGATGTTTATA
Found at i:34597914 original size:13 final size:13
Alignment explanation
Indices: 34597896--34597995 Score: 89
Period size: 13 Copynumber: 8.6 Consensus size: 13
34597886 AAACATCTTT
34597896 ACTCCACTAAACC
1 ACTCCACTAAACC
34597909 ACT-C-C--AACC
1 ACTCCACTAAACC
*
34597918 ACCCCACTAAACC
1 ACTCCACTAAACC
*
34597931 ACTACACTAAACC
1 ACTCCACTAAACC
34597944 AC-CC-C--AACC
1 ACTCCACTAAACC
*
34597953 ACCCCACTAAACC
1 ACTCCACTAAACC
34597966 ACTCCACTAAACC
1 ACTCCACTAAACC
34597979 AC-CC-C--AACC
1 ACTCCACTAAACC
34597988 ACTCCACT
1 ACTCCACT
34597996 TGCCTACAAG
Statistics
Matches: 71, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
9 18 0.25
10 5 0.07
11 6 0.08
12 4 0.06
13 38 0.54
ACGTcount: A:0.37, C:0.52, G:0.00, T:0.11
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:34597924 original size:22 final size:22
Alignment explanation
Indices: 34597899--34597995 Score: 79
Period size: 22 Copynumber: 4.2 Consensus size: 22
34597889 CATCTTTACT
34597899 CCACTAAACCACTCCAACCACC
1 CCACTAAACCACTCCAACCACC
34597921 CCACTAAACCACTACACTAAACCACC
1 CCACTAAACCACT-C-C--AACCACC
* ** * *
34597947 CCAACCACCCCACT-AAACCACT
1 CC-ACTAAACCACTCCAACCACC
* *
34597969 CCACTAAACCACCCCAACCACT
1 CCACTAAACCACTCCAACCACC
34597991 CCACT
1 CCACT
34597996 TGCCTACAAG
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
21 7 0.12
22 33 0.56
23 1 0.02
24 1 0.02
26 9 0.15
27 8 0.14
ACGTcount: A:0.37, C:0.53, G:0.00, T:0.10
Consensus pattern (22 bp):
CCACTAAACCACTCCAACCACC
Found at i:34597951 original size:35 final size:35
Alignment explanation
Indices: 34597900--34597995 Score: 165
Period size: 35 Copynumber: 2.7 Consensus size: 35
34597890 ATCTTTACTC
*
34597900 CACTAAACCACTCCAACCACCCCACTAAACCACTA
1 CACTAAACCACCCCAACCACCCCACTAAACCACTA
*
34597935 CACTAAACCACCCCAACCACCCCACTAAACCACTC
1 CACTAAACCACCCCAACCACCCCACTAAACCACTA
*
34597970 CACTAAACCACCCCAACCACTCCACT
1 CACTAAACCACCCCAACCACCCCACT
34597996 TGCCTACAAG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 58 1.00
ACGTcount: A:0.38, C:0.52, G:0.00, T:0.10
Consensus pattern (35 bp):
CACTAAACCACCCCAACCACCCCACTAAACCACTA
Found at i:34598389 original size:3 final size:3
Alignment explanation
Indices: 34598357--34598489 Score: 51
Period size: 3 Copynumber: 44.3 Consensus size: 3
34598347 GGAGAGAGAG
* * * * *
34598357 TTA TTT TTA ATA TTG TTA TTA TTT TCTA TTA TTA TTA TTA TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
* ** * * * *
34598403 ATA CCA CTA TTA TCA TTA TTA TTA CTA TTA -TA TTA -TA ATA CCTT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA --TTA
* * *
34598447 TTCA TTA TTA TTA CTA TTG TGT- TT- TTA CTA TTA TTA TTA TTA T
1 TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T
34598490 ATTTTCTTTT
Statistics
Matches: 97, Mismatches: 24, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
2 9 0.09
3 82 0.85
4 5 0.05
5 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:34598394 original size:19 final size:18
Alignment explanation
Indices: 34598357--34598398 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
34598347 GGAGAGAGAG
*
34598357 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
34598375 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
34598394 TTATT
1 TTATT
34598399 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:34598452 original size:33 final size:39
Alignment explanation
Indices: 34598383--34598464 Score: 113
Period size: 33 Copynumber: 2.3 Consensus size: 39
34598373 TATTATTTTC
*
34598383 TATTATTATTATTATTACTAATACCACTATTATCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATTAT
34598422 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATTAT
34598455 TATTACTATT
1 TATTACTATT
34598465 GTGTTTTTAC
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
33 17 0.40
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATTAT
Found at i:34598494 original size:23 final size:23
Alignment explanation
Indices: 34598410--34598494 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
34598400 CTAATACCAC
* *
34598410 TATTATCATTATTATTACTATTA-
1 TATTATTA-TATTTTTACTATTAT
* * *
34598433 TATTATAATACCTTTTCATTATTAT
1 TATTATTATA--TTTTTACTATTAT
* * *
34598458 TACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
34598481 TATTATTATATTTT
1 TATTATTATATTTT
34598495 CTTTTTTTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
22 2 0.04
23 29 0.63
24 9 0.20
25 6 0.13
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:34598713 original size:17 final size:19
Alignment explanation
Indices: 34598693--34598732 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
34598683 TGTTCGACTC
*
34598693 ATTTATC-TTAC-CTTCAT
1 ATTTATCGTTACTATTCAT
34598710 ATTTATCGTTACTATTCAT
1 ATTTATCGTTACTATTCAT
34598729 ATTT
1 ATTT
34598733 GTGTTTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
18 4 0.20
19 9 0.45
ACGTcount: A:0.25, C:0.17, G:0.03, T:0.55
Consensus pattern (19 bp):
ATTTATCGTTACTATTCAT
Found at i:34600996 original size:46 final size:46
Alignment explanation
Indices: 34600846--34601149 Score: 217
Period size: 47 Copynumber: 6.5 Consensus size: 46
34600836 TTTGTGTGCT
* *
34600846 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCC
* * * * * *
34600892 AGTGTAAGACCATGTATGGGACATGGCATCAG-CATCCA-AACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCTTCAGCCAT--ATTATGAGAGCC
*
34600940 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCC
* * * ** * *
34600986 AGAGTAAGACATGTCTGGGACATGCATCGGCC-TCGACAAAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCAT--ATTATGAGAGCC
* * * * ** * * *
34601033 AGTGTAAGACGTGTCTAGGACACGCATCAG-C-TAAGA-GTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATG-AGAGCC
*
34601077 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCATA-TATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCTTCAG--C-CATATTATGAGAGCC
*
34601125 AGTATAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
34601150 GTATCAGCAA
Statistics
Matches: 201, Mismatches: 41, Indels: 29
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.00
44 31 0.15
45 2 0.01
46 52 0.26
47 63 0.31
48 33 0.16
49 19 0.09
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCTTCAGCCATATTATGAGAGCC
Found at i:34602749 original size:25 final size:22
Alignment explanation
Indices: 34602700--34602753 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 22
34602690 TTCTAAATTC
34602700 AATTTAAACGATATAATACAAT
1 AATTTAAACGATATAATACAAT
*
34602722 AATTTCAAACAGATTTAATAACAAT
1 AATTT-AAAC-GATATAAT-ACAAT
34602747 AATTTAA
1 AATTTAA
34602754 TCATAAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 5 0.18
23 4 0.14
24 9 0.32
25 10 0.36
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (22 bp):
AATTTAAACGATATAATACAAT
Found at i:34605331 original size:26 final size:26
Alignment explanation
Indices: 34605294--34605427 Score: 241
Period size: 26 Copynumber: 5.2 Consensus size: 26
34605284 TGATACAAAT
*
34605294 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34605320 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34605346 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34605372 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34605398 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34605424 TGAT
1 TGAT
34605428 GGAATTTCAT
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 105 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34607097 original size:27 final size:27
Alignment explanation
Indices: 34607001--34607104 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
34606991 AGGAAGCGTC
* *
34607001 CTGGTGGCTATGCCACATTATCTG-AT
1 CTGGTGGCTCTGCCACAATATCTGTAT
34607027 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
34607054 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
34607081 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GCCACAATATCTG
34607105 GCAGCCTCGC
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
26 25 0.36
27 45 0.64
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:34613272 original size:25 final size:25
Alignment explanation
Indices: 34613233--34613362 Score: 226
Period size: 25 Copynumber: 5.2 Consensus size: 25
34613223 TGATACAAAT
*
34613233 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
34613259 TGATAAT-GGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
34613283 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
34613308 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTT-CA
34613334 TGATAATGGGTTAGGTAAATGTTCA
1 TGATAATGGGTTAGGTAAATGTTCA
34613359 TGAT
1 TGAT
34613363 GAATTTCATG
Statistics
Matches: 102, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
24 9 0.09
25 61 0.60
26 32 0.31
ACGTcount: A:0.32, C:0.05, G:0.26, T:0.36
Consensus pattern (25 bp):
TGATAATGGGTTAGGTAAATGTTCA
Found at i:34615026 original size:32 final size:27
Alignment explanation
Indices: 34614944--34615030 Score: 115
Period size: 27 Copynumber: 3.2 Consensus size: 27
34614934 AGAAAGTGTC
*
34614944 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
34614971 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
34614998 CTGGTGGCTCTGCCACA-ATATTTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
34615025 CTGGTG
1 CTGGTG
34615031 ACTTCGTCAC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 8 0.15
27 46 0.85
ACGTcount: A:0.16, C:0.23, G:0.25, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:34617129 original size:10 final size:10
Alignment explanation
Indices: 34617059--34617244 Score: 51
Period size: 10 Copynumber: 19.2 Consensus size: 10
34617049 AATTTTACTT
34617059 TTATATATATA
1 TTATATAT-TA
*
34617070 TTATAAAATTA
1 TTAT-ATATTA
*
34617081 TTATA-AGTA
1 TTATATATTA
34617090 TTAT-T-TTAA
1 TTATATATT-A
34617099 TTATATATTA
1 TTATATATTA
*
34617109 TTACTA-CTTA
1 TTA-TATATTA
*
34617119 TTATGTATTA
1 TTATATATTA
* *
34617129 TT-TTTCTTA
1 TTATATATTA
*
34617138 -AATATTATT-
1 TTATA-TATTA
* * *
34617147 TTACATCTCTT
1 TTATATAT-TA
34617158 TTATATATTA
1 TTATATATTA
*
34617168 TTATATTTTCA
1 TTATATATT-A
*
34617179 -CATATATTA
1 TTATATATTA
*
34617188 -TATTTATTAA
1 TTATATATT-A
34617198 TTATATA-TA
1 TTATATATTA
34617207 -TAT-TATT-
1 TTATATATTA
*
34617214 TTATATGTTA
1 TTATATATTA
34617224 CTT-TATATTA
1 -TTATATATTA
*
34617234 -TATCTATTA
1 TTATATATTA
34617243 TT
1 TT
34617245 TTTCTTATAT
Statistics
Matches: 127, Mismatches: 26, Indels: 45
0.64 0.13 0.23
Matches are distributed among these distances:
7 2 0.02
8 9 0.07
9 38 0.30
10 47 0.37
11 28 0.22
12 3 0.02
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (10 bp):
TTATATATTA
Found at i:34617307 original size:18 final size:18
Alignment explanation
Indices: 34617284--34617318 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
34617274 ATATAATCTT
34617284 TATTATGTT-TTATTTTTA
1 TATTAT-TTATTATTTTTA
34617302 TATTATTTATTATTTTT
1 TATTATTTATTATTTTT
34617319 TTATATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TATTATTTATTATTTTTA
Found at i:34617327 original size:24 final size:24
Alignment explanation
Indices: 34617165--34617328 Score: 76
Period size: 24 Copynumber: 6.9 Consensus size: 24
34617155 CTTTTATATA
* * *
34617165 TTATTATATTTTCACATATATTAT
1 TTATTATTTTTTTATATATATTAT
* * *
34617189 AT-TTATTAATTATATATATATTAT
1 TTATTATT-TTTTTATATATATTAT
*
34617213 TT-TATATGTTACTTTATAT-TA-TAT
1 TTAT-TAT-TT-TTTTATATATATTAT
* *
34617237 CTATTATTTTTCTTATATGT-TTAT
1 TTATTATTTTT-TTATATATATTAT
* * *
34617261 ATTA-CATTTTCTTATATA-A-TCT
1 -TTATTATTTTTTTATATATATTAT
*
34617283 TTATTATGTTTTATT-TTTATATTAT
1 TTATTAT-TTTT-TTATATATATTAT
34617308 TTATTATTTTTTTATATATAT
1 TTATTATTTTTTTATATATAT
34617329 GTATATCATG
Statistics
Matches: 102, Mismatches: 22, Indels: 32
0.65 0.14 0.21
Matches are distributed among these distances:
21 3 0.03
22 5 0.05
23 26 0.25
24 44 0.43
25 17 0.17
26 7 0.07
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (24 bp):
TTATTATTTTTTTATATATATTAT
Found at i:34628389 original size:7 final size:8
Alignment explanation
Indices: 34628373--34628408 Score: 63
Period size: 8 Copynumber: 4.4 Consensus size: 8
34628363 CCTTGAATTT
34628373 AATAAAAA
1 AATAAAAA
34628381 AATAAAAAA
1 AAT-AAAAA
34628390 AATAAAAA
1 AATAAAAA
34628398 AATAAAAA
1 AATAAAAA
34628406 AAT
1 AAT
34628409 GGAGAGGCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (8 bp):
AATAAAAA
Found at i:34628390 original size:9 final size:9
Alignment explanation
Indices: 34628376--34628407 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
34628366 TGAATTTAAT
34628376 AAAAAAATA
1 AAAAAAATA
34628385 AAAAAAAT-
1 AAAAAAATA
34628393 AAAAAAATA
1 AAAAAAATA
34628402 AAAAAA
1 AAAAAA
34628408 TGGAGAGGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAAAATA
Found at i:34628395 original size:17 final size:17
Alignment explanation
Indices: 34628373--34628407 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
34628363 CCTTGAATTT
34628373 AATAAAAAAATAAAAAA
1 AATAAAAAAATAAAAAA
34628390 AATAAAAAAATAAAAAA
1 AATAAAAAAATAAAAAA
34628407 A
1 A
34628408 TGGAGAGGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (17 bp):
AATAAAAAAATAAAAAA
Found at i:34629458 original size:119 final size:119
Alignment explanation
Indices: 34629247--34629596 Score: 585
Period size: 119 Copynumber: 2.9 Consensus size: 119
34629237 AATTGAAGAC
* * * *
34629247 AGCAGATCTAGA-CTTTAGACATTTATGCTGAAGCAGATCCAAGATGATTTGGTTTTCTTGTGTT
1 AGCAGATCTA-ACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
* * *
34629311 TACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
65 TACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATAT
*
34629366 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
*
34629431 ACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATGT
66 ACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATAT
34629485 AGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* *
34629550 ACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCT
66 ACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCT
34629597 TAAACAAACT
Statistics
Matches: 218, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
118 1 0.00
119 217 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (119 bp):
AGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
ACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATAT
Found at i:34629719 original size:321 final size:321
Alignment explanation
Indices: 34629303--34630006 Score: 1192
Period size: 321 Copynumber: 2.2 Consensus size: 321
34629293 ATTTGGTTTT
* * *
34629303 CTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
1 CTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCAGACGTTCTCAAATATAG
* * * *
34629368 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
66 CAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTAC
34629433 AAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCTAACC
131 AAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCTAACC
34629498 TTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAAT
196 TTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAAT
34629563 CGAGGACATTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGAGGGTTTGGCATC
261 CGAGGACATTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGAGGGTTTGGCATC
* *
34629624 CTTGTGCTTACAAGGGACAAATCGAGAACATAGCAGATTTGATTCTCAGACGTTCTCAGATATAG
1 CTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCAGACGTTCTCAAATATAG
* *
34629689 CAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGCTTAT
66 CAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTAC
* *
34629754 AAGGGACAAATCGAGGACATAGCAGATTTGACTCTCAAAAGTTCTCAAATGTAGCAGATCTAACC
131 AAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCTAACC
* * * *
34629819 TTTAGATGTTTATACTGAAGCAGATCCAAGATGATTTGTTATTCTTGTGTTTACAAGGAATAAAT
196 TTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAAT
*
34629884 CGAGGACATTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGATGGTTTGGCATC
261 CGAGGACATTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGAGGGTTTGGCATC
* * * * * *
34629945 CTTGTGCTTACAAAGGAAAAAACGAGGACATAGCAGATATGATTCTCAAAAGTTCTCAAATA
1 CTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCAGACGTTCTCAAATA
34630007 GATCAAGATG
Statistics
Matches: 357, Mismatches: 26, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
321 357 1.00
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.29
Consensus pattern (321 bp):
CTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGATTCTCAGACGTTCTCAAATATAG
CAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTAC
AAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTCAAATGTAGCAGATCTAACC
TTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAAT
CGAGGACATTGCAGATATGACTCTCAAATGTTCTTAAACAAACTCAAGAGGGTTTGGCATC
Found at i:34629788 original size:202 final size:202
Alignment explanation
Indices: 34629413--34629798 Score: 592
Period size: 202 Copynumber: 1.9 Consensus size: 202
34629403 TCCAAGATGA
* * * *
34629413 TTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCT
1 TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGAACATAGCAGATATGACTCTCAAAAGTTCT
* * *
34629478 CAAATGTAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGTATTCT
66 CAAATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATCCT
* * *
34629543 TGTGTTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTTAAACAAACTC
131 TGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTTAAACAAACTC
34629608 AAGAGGG
196 AAGAGGG
* * * * *
34629615 TTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGAACATAGCAGATTTGATTCTCAGACGTTCT
1 TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGAACATAGCAGATATGACTCTCAAAAGTTCT
* *
34629680 CAGATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCT
66 CAAATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATCCT
* * *
34629745 TGTGCTTATAAGGGACAAATCGAGGACATAGCAGATTTGACTCTCAAAAGTTCT
131 TGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCT
34629799 CAAATGTAGC
Statistics
Matches: 164, Mismatches: 20, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
202 164 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30
Consensus pattern (202 bp):
TTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGAACATAGCAGATATGACTCTCAAAAGTTCT
CAAATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATCCAAGATGATTTGGCATCCT
TGTGCTTACAAGGAACAAATCGAGGACATAGCAGATATGACTCTCAAAAGTTCTTAAACAAACTC
AAGAGGG
Found at i:34629818 original size:119 final size:119
Alignment explanation
Indices: 34629607--34629917 Score: 442
Period size: 119 Copynumber: 2.6 Consensus size: 119
34629597 TAAACAAACT
* * *
34629607 CAAGAGGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGAACATAGCAGATTTGATTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGACTCTCA
* * *
34629672 GACGTTCTCAGATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATC
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATC
*
34629726 CAAGATGGTTTGGCATCCTTGTGCTTATAAGGGACAAATCGAGGACATAGCAGATTTGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGACTCTCA
* * *
34629791 AAAGTTCTCAAATGTAGCAGATCTAACCTTTAGATGTTTATACTGAAGCAGATC
66 AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATC
* ** * * * * * *
34629845 CAAGATGATTTGTTATTCTTGTGTTTACAAGGAATAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGACTCTCA
*
34629910 AATGTTCT
66 AAAGTTCT
34629918 TAAACAAACT
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
119 171 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (119 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGGACAAATCGAGGACATAGCAGATTTGACTCTCA
AAAGTTCTCAAATATAGCAGATCTAACCTTCAGATATTTATACTGAAGCAGATC
Found at i:34629957 original size:83 final size:82
Alignment explanation
Indices: 34629845--34630026 Score: 231
Period size: 83 Copynumber: 2.2 Consensus size: 82
34629835 GAAGCAGATC
** * * * *
34629845 CAAGATGATTTGTTATTCTTGTGTTTAC-AAGGAATAAATCGAGGACATTGCAGATATGACTCTC
1 CAAGATGATTTGGCATCCTTGTGCTTACAAAGGAA-AAAACGAGGACATAGCAGATATGACTCTC
* *
34629909 AAATGTTCTTAAACAAACT
65 AAAAGTTCTCAAACAAA-T
* *
34629928 CAAGATGGTTTGGCATCCTTGTGCTTACAAAGGAAAAAACGAGGACATAGCAGATATGATTCTCA
1 CAAGATGATTTGGCATCCTTGTGCTTACAAAGGAAAAAACGAGGACATAGCAGATATGACTCTCA
* *
34629993 AAAGTTCTCAAATAGAT
66 AAAGTTCTCAAACAAAT
34630010 CAAGATGATTTGGCATC
1 CAAGATGATTTGGCATC
34630027 TCTACAAATT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
82 17 0.20
83 62 0.73
84 6 0.07
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (82 bp):
CAAGATGATTTGGCATCCTTGTGCTTACAAAGGAAAAAACGAGGACATAGCAGATATGACTCTCA
AAAGTTCTCAAACAAAT
Found at i:34631782 original size:24 final size:22
Alignment explanation
Indices: 34631726--34631821 Score: 59
Period size: 23 Copynumber: 4.1 Consensus size: 22
34631716 ATATTATATC
*
34631726 TATTATTTTTCTTATATGTTTA
1 TATTATTTTTCTTATATATTTA
*
34631748 TATTACATTTTCTTATATAATCTT-
1 TATTA-TTTTTCTTATAT-AT-TTA
* * *
34631772 TATTATGTTTTATTTTTATATTATT
1 TATTAT-TTTT-CTTATATATT-TA
* * *
34631797 TATTGTTTTTTTTATATATGTA
1 TATTATTTTTCTTATATATTTA
34631819 TAT
1 TAT
34631822 CATGTATCGC
Statistics
Matches: 58, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
22 9 0.16
23 20 0.34
24 17 0.29
25 12 0.21
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (22 bp):
TATTATTTTTCTTATATATTTA
Found at i:34631867 original size:20 final size:19
Alignment explanation
Indices: 34631834--34631871 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
34631824 TGTATCGCAA
34631834 ATTATATTATTTATGTTTAT
1 ATTATATTATTTAT-TTTAT
34631854 ATTATA-TATATTATTTTA
1 ATTATATTAT-TTATTTTA
34631872 AAAATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
ATTATATTATTTATTTTAT
Found at i:34634319 original size:35 final size:37
Alignment explanation
Indices: 34634248--34634345 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
34634238 ATAATCTTCA
34634248 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
34634286 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
34634321 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
34634346 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:34634345 original size:17 final size:19
Alignment explanation
Indices: 34634248--34634338 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
34634238 ATAATCTTCA
34634248 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34634267 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34634286 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34634303 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34634321 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
34634339 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:34634364 original size:22 final size:22
Alignment explanation
Indices: 34634248--34634361 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
34634238 ATAATCTTCA
34634248 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34634267 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34634286 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34634303 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
34634321 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
34634343 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
34634362 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:34634649 original size:18 final size:18
Alignment explanation
Indices: 34634626--34634661 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
34634616 TGTTTCCCGG
34634626 ATTTTTTT-ATATATTTTA
1 ATTTTTTTAATA-ATTTTA
34634644 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
34634662 GTATCATATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:34642875 original size:124 final size:122
Alignment explanation
Indices: 34642655--34642876 Score: 284
Period size: 124 Copynumber: 1.8 Consensus size: 122
34642645 GAATTATGTG
* * * * *
34642655 GAATGAAATATGGATGTATTGATTATTGATTTATGTGTGTATGAGTATTCGAATAATGCCCGGGC
1 GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
* * * **
34642720 TAAGTCCCGAAGGCGATTATGCTAGTGATTATAATTGTGTTTGAGCCTTAGTAACGA
66 TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
* * *
34642777 GAATGAAATATGTATGTCCAATGATTATTGATGTATGTGTGCATGAGAAATT-GAATGATATCCG
1 GAATGAAATATGGATGT--AATGATTATTGATGTATGTGTGCATGAG-AATTCGAATAATACCCG
*
34642841 GGCTAAGCCCCGAAGACAATTATGCTGGAAATTATA
63 GGCTAAGCCCCGAAGACAATTATGCTAGAAATTATA
34642877 TCCGGGTTAA
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
122 16 0.19
124 64 0.77
125 3 0.04
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (122 bp):
GAATGAAATATGGATGTAATGATTATTGATGTATGTGTGCATGAGAATTCGAATAATACCCGGGC
TAAGCCCCGAAGACAATTATGCTAGAAATTATAATTGTGTTTGAGCCTTAGTAACGA
Found at i:34642920 original size:40 final size:40
Alignment explanation
Indices: 34642835--34642985 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
34642825 AATTGAATGA
* * * *
34642835 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
34642875 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
34642916 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
34642955 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
34642986 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:34642999 original size:40 final size:40
Alignment explanation
Indices: 34642872--34643001 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
34642862 ATGCTGGAAA
* * *
34642872 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
34642912 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
34642952 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
34642992 TTATATCCGG
1 TTATATCCGG
34643002 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:34643000 original size:80 final size:80
Alignment explanation
Indices: 34642834--34643001 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
34642824 AAATTGAATG
* *
34642834 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
34642899 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
34642914 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
34642977 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
34642994 ATATCCGG
1 ATATCCGG
34643002 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:34646172 original size:26 final size:26
Alignment explanation
Indices: 34646135--34646218 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
34646125 TGATACAAAT
* *
34646135 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
34646161 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
34646187 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
34646213 TGATAA
1 TGATAA
34646219 GAATTTCATG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.33, C:0.05, G:0.25, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:34647922 original size:54 final size:54
Alignment explanation
Indices: 34647835--34647976 Score: 189
Period size: 54 Copynumber: 2.6 Consensus size: 54
34647825 TGGAGGAAGC
* * *
34647835 GTTCTGGTGGCTATGCCACAAATATTTGA-TCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACATATATCT-ATTCTGGTGGCTCTGCCACAAATATCT
* *
34647889 GTTCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTCTGCCACAAATATCT
* *
34647943 GTATCTGGTGACTCTGTCACAT-TATCTATTCTGG
1 GT-TCTGGTGGCTCTGCCACATATATCTATTCTGG
34647977 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.01
54 61 0.77
55 17 0.22
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTCTGCCACATATATCTATTCTGGTGGCTCTGCCACAAATATCT
Found at i:34647966 original size:27 final size:27
Alignment explanation
Indices: 34647835--34647976 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
34647825 TGGAGGAAGC
* * *
34647835 GTTCTGGTGGCTATGCCACAAATATTT
1 GTTCTGGTGGCTCTGCCACAATTATCT
* *
34647862 GATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
34647889 GTTCTGGTGGCTCTGCCAC-ATATATCT
1 GTTCTGGTGGCTCTGCCACAAT-TATCT
* *
34647916 ATTCTGGTGGCTCTGCCACGATTATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
* *
34647943 GTATCTGGTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTCTGCCACAATTATCT
*
34647970 ATTCTGG
1 GTTCTGG
34647977 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
26 6 0.06
27 79 0.77
28 17 0.17
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.37
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAATTATCT
Found at i:34649072 original size:2 final size:2
Alignment explanation
Indices: 34649030--34649062 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
34649020 TTTATCATTC
34649030 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34649063 TCTTATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:34649128 original size:20 final size:20
Alignment explanation
Indices: 34649100--34649195 Score: 67
Period size: 20 Copynumber: 4.8 Consensus size: 20
34649090 TACCTTACTT
*
34649100 TTATATTATACATTATAATA
1 TTATTTTATACATTATAATA
* *
34649120 TTATTTTAT-TATGTATATTA
1 TTATTTTATACAT-TATAATA
34649140 TTATTATT-T--ATTAT-ATA
1 TTATT-TTATACATTATAATA
* *
34649157 TTATTTTCATAAATTATTATTA
1 TTATTTT-ATACATTA-TAATA
34649179 TTATTTTATATCATTAT
1 TTATTTTATA-CATTAT
34649196 TTTATATTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 17
0.73 0.07 0.20
Matches are distributed among these distances:
16 2 0.03
17 7 0.11
18 4 0.07
19 4 0.07
20 24 0.39
21 7 0.11
22 13 0.21
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.60
Consensus pattern (20 bp):
TTATTTTATACATTATAATA
Found at i:34649131 original size:3 final size:3
Alignment explanation
Indices: 34649118--34649211 Score: 76
Period size: 3 Copynumber: 32.0 Consensus size: 3
34649108 TACATTATAA
34649118 TAT TAT T-T TAT TAT GTA- TAT TAT TAT TATT TAT TAT ATAT TAT T-T
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TA-T TAT TAT -TAT TAT TAT
* *
34649163 TCAT AAAT TAT TAT TAT TAT T-T TA- TAT CAT TAT T-T TA- TAT TAT
1 T-AT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
34649206 TAT TAT
1 TAT TAT
34649212 ATTTTACTTG
Statistics
Matches: 75, Mismatches: 4, Indels: 24
0.73 0.04 0.23
Matches are distributed among these distances:
2 14 0.19
3 50 0.67
4 11 0.15
ACGTcount: A:0.33, C:0.02, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:34649153 original size:13 final size:13
Alignment explanation
Indices: 34649120--34649246 Score: 70
Period size: 13 Copynumber: 9.3 Consensus size: 13
34649110 CATTATAATA
34649120 TTATT-TTATTAT
1 TTATTATTATTAT
34649132 GTATATTATTATTAT
1 -T-TATTATTATTAT
34649147 TTATTATATATTATT
1 TTATTAT-TATTA-T
*
34649162 TTCATAAATTATTA-
1 TT-AT-TATTATTAT
34649176 TTATTATT-TTAT
1 TTATTATTATTAT
*
34649188 ATCATTATT-TTAT
1 -TTATTATTATTAT
34649201 ATTATTATTA-TATT
1 -TTATTATTATTA-T
34649215 TTACTTGTATTATATAT
1 TTA--T-TATTAT-TAT
34649232 TTATTA--ATTAT
1 TTATTATTATTAT
34649243 TTAT
1 TTAT
34649247 ATATATTGTT
Statistics
Matches: 95, Mismatches: 4, Indels: 32
0.73 0.03 0.24
Matches are distributed among these distances:
11 10 0.11
12 5 0.05
13 33 0.35
14 15 0.16
15 12 0.13
16 12 0.13
17 6 0.06
18 2 0.02
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:34649192 original size:26 final size:26
Alignment explanation
Indices: 34649114--34649213 Score: 88
Period size: 26 Copynumber: 4.0 Consensus size: 26
34649104 ATTATACATT
*
34649114 ATAA-TATTATT-TTATTATGTATATT
1 ATAATTATTATTATTATTAT-TATATC
*
34649139 ATTATTATTTATTATATATTATT-T-TC
1 ATAATTA-TTATTAT-TATTATTATATC
34649165 ATAAATTATTATTATTATT-TTATATC
1 AT-AATTATTATTATTATTATTATATC
*
34649191 ATTATT-TTA-TATTATTATTATAT
1 ATAATTATTATTATTATTATTATAT
34649214 TTTACTTGTA
Statistics
Matches: 63, Mismatches: 4, Indels: 17
0.75 0.05 0.20
Matches are distributed among these distances:
23 7 0.11
24 11 0.17
25 11 0.17
26 16 0.25
27 10 0.16
28 2 0.03
29 6 0.10
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (26 bp):
ATAATTATTATTATTATTATTATATC
Found at i:34649194 original size:16 final size:17
Alignment explanation
Indices: 34649169--34649217 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
34649159 ATTTTCATAA
*
34649169 ATTATTATTATTATTTT
1 ATTATCATTATTATTTT
*
34649186 A-TATCATTATT-TTAT
1 ATTATCATTATTATTTT
*
34649201 ATTATTATTA-TATTTT
1 ATTATCATTATTATTTT
34649217 A
1 A
34649218 CTTGTATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
15 5 0.19
16 20 0.77
17 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
ATTATCATTATTATTTT
Found at i:34649203 original size:29 final size:30
Alignment explanation
Indices: 34649103--34649250 Score: 89
Period size: 29 Copynumber: 4.9 Consensus size: 30
34649093 CTTACTTTTA
*
34649103 TATTATACATTATAATATTATTTTAT-T-ATG
1 TATTATATATTAT--TATTATTTTATATCATG
* *
34649133 TA-TAT-TATTATTATTTATTATATATTAT-
1 TATTATATATTATTA-TTATTTTATATCATG
34649161 T-TTCATAAATTATTATTATTATTTTATATCAT-
1 TATT-AT--A-TATTATTATTATTTTATATCATG
* *
34649193 TATTTTATATTATTATTATATTT-TA-CTTG
1 TATTATATATTATTATTAT-TTTATATCATG
34649222 TATTATATATTTATTAATTATTTATATAT
1 TATTATATA-TTATT-ATTATTT-TATAT
34649251 ATTGTTCTTA
Statistics
Matches: 94, Mismatches: 7, Indels: 31
0.71 0.05 0.23
Matches are distributed among these distances:
26 2 0.02
27 8 0.09
28 10 0.11
29 29 0.31
30 13 0.14
31 6 0.06
32 16 0.17
33 10 0.11
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (30 bp):
TATTATATATTATTATTATTTTATATCATG
Found at i:34649363 original size:17 final size:18
Alignment explanation
Indices: 34649343--34649388 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
34649333 TTATATAACA
*
34649343 TTTATTATATT-TTTATT
1 TTTATTATATTACTTATT
34649360 TTTATTCTATATTACTTATT
1 TTTA-T-TATATTACTTATT
34649380 TTT-TTATAT
1 TTTATTATAT
34649389 GTTATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 9 0.36
18 2 0.08
19 6 0.24
20 8 0.32
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTATATTACTTATT
Found at i:34649449 original size:15 final size:14
Alignment explanation
Indices: 34649121--34649451 Score: 68
Period size: 14 Copynumber: 23.0 Consensus size: 14
34649111 ATTATAATAT
* *
34649121 TATTTTATTATGTA
1 TATTATATTATTTA
34649135 TATTATTATTATTTA
1 TATTA-TATTATTTA
34649150 T-TATATATTATTTTCA
1 TAT-TATATTA-TTT-A
34649166 TAAATTATTATTA-TTA
1 T--ATTA-TATTATTTA
* *
34649182 TTTTATATCA-TTA
1 TATTATATTATTTA
*
34649195 TTTTATATTA-TTA
1 TATTATATTATTTA
* * *
34649208 T-TATATTTTACTTG
1 TAT-TATATTATTTA
34649222 TATTATA-TA-TT-
1 TATTATATTATTTA
34649233 TATTA-ATTATTTA
1 TATTATATTATTTA
*
34649246 TA-TATATTGTTCTTA
1 TATTATATT-AT-TTA
* *
34649261 CATATATATTTTCGTTA
1 TAT-TATATTAT--TTA
* * *
34649278 TTTTATATTATATC
1 TATTATATTATTTA
34649292 TATTATATT-TCTTA
1 TATTATATTAT-TTA
*
34649306 T-TTCCTATATATTTA
1 TATT-ATAT-TATTTA
* *
34649321 AATTATATTTTATTA
1 TATTATATTAT-TTA
* *
34649336 TATAACATT-TATTA
1 TATTATATTAT-TTA
*
34649350 TATT-T-TTATTTT
1 TATTATATTATTTA
*
34649362 TATTCTATATTACTTA
1 TA-T-TATATTATTTA
* *
34649378 T-TTTTTTATATGTTA
1 TATTATAT-TAT-TTA
*
34649393 TATATATCATATATTATC
1 TAT-TAT-AT-TATT-TA
34649411 TATTATATTATTTA
1 TATTATATTATTTA
34649425 TATTTATATTA-TT-
1 TA-TTATATTATTTA
*
34649438 CATTATATTATTTA
1 TATTATATTATTTA
34649452 AAATTTTAAA
Statistics
Matches: 238, Mismatches: 39, Indels: 80
0.67 0.11 0.22
Matches are distributed among these distances:
10 1 0.00
11 7 0.03
12 21 0.09
13 44 0.18
14 53 0.22
15 52 0.22
16 25 0.11
17 18 0.08
18 11 0.05
19 6 0.03
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (14 bp):
TATTATATTATTTA
Found at i:34649542 original size:19 final size:19
Alignment explanation
Indices: 34649516--34649579 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 19
34649506 TAAAATATTC
34649516 ATTA-TTTATTTATTATGT
1 ATTATTTTATTTATTATGT
**
34649534 ATTATTTTATTTTAAAATG-
1 ATTATTTTA-TTTATTATGT
*
34649553 A-TATTTT-TATATTATGT
1 ATTATTTTATTTATTATGT
*
34649570 GTTATTTTAT
1 ATTATTTTAT
34649580 AAATTATTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
16 6 0.17
18 16 0.46
19 6 0.17
20 7 0.20
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (19 bp):
ATTATTTTATTTATTATGT
Found at i:34649682 original size:22 final size:22
Alignment explanation
Indices: 34649628--34649683 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
34649618 ACCCAATATA
*
34649628 TTTTATATATTATTATGATTCT
1 TTTTATATATTATTATGATTAT
* *
34649650 TTTATAAATATT-TTATTATTAT
1 TTT-TATATATTATTATGATTAT
34649672 GTTTTATATATT
1 -TTTTATATATT
34649684 GTATAGCAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTTATATATTATTATGATTAT
Found at i:34649901 original size:33 final size:33
Alignment explanation
Indices: 34649862--34649931 Score: 122
Period size: 33 Copynumber: 2.1 Consensus size: 33
34649852 TTGTATTACT
* *
34649862 CTTTTTTGTCTGTCATGCATTATTTAATTATTA
1 CTTTTTTGTATATCATGCATTATTTAATTATTA
34649895 CTTTTTTGTATATCATGCATTATTTAATTATTA
1 CTTTTTTGTATATCATGCATTATTTAATTATTA
34649928 CTTT
1 CTTT
34649932 GCATGTTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.23, C:0.11, G:0.07, T:0.59
Consensus pattern (33 bp):
CTTTTTTGTATATCATGCATTATTTAATTATTA
Found at i:34652147 original size:14 final size:15
Alignment explanation
Indices: 34652108--34652142 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
34652098 CAAAAAGGAT
34652108 AAAAAAACAA-TT-A
1 AAAAAAACAATTTGA
34652121 AAAAAAACAATTTGA
1 AAAAAAACAATTTGA
34652136 AAAAAAA
1 AAAAAAA
34652143 TATTTAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 10 0.50
14 2 0.10
15 8 0.40
ACGTcount: A:0.77, C:0.06, G:0.03, T:0.14
Consensus pattern (15 bp):
AAAAAAACAATTTGA
Found at i:34652314 original size:19 final size:21
Alignment explanation
Indices: 34652287--34652338 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
34652277 ATTTTAGAAC
*
34652287 TTTATATAATAT-GCTA-ATTA
1 TTTA-ATAATATAGATATATTA
*
34652307 TTTAATAATGATATATATATTA
1 TTTAATAAT-ATAGATATATTA
34652329 TTTAATAATA
1 TTTAATAATA
34652339 ATTAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 5 0.19
20 6 0.22
21 3 0.11
22 13 0.48
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (21 bp):
TTTAATAATATAGATATATTA
Found at i:34652430 original size:54 final size:54
Alignment explanation
Indices: 34652371--34652516 Score: 135
Period size: 52 Copynumber: 2.8 Consensus size: 54
34652361 ACCATTAAAG
*
34652371 AATAGTAAAATAATATATAATTTATAATAAAATAAAAATATAAGGAATAAT-AT
1 AATAGTAAAATAATATATAATATATAATAAAATAAAAATATAAGGAATAATGAT
* * * * * *
34652424 ATATAGT--AA-AATATATAATGTATAATAAACTTATAAATAAAATGTATAATGAT
1 A-ATAGTAAAATAATATATAATATATAATAAA-ATAAAAATATAAGGAATAATGAT
* *
34652477 AATA-TAATATAATGA-ATAATATATAATAAAA-AATAATATA
1 AATAGTAAAATAAT-ATATAATATATAATAAAATAAAAATATA
34652517 TATACTGTTT
Statistics
Matches: 74, Mismatches: 12, Indels: 15
0.73 0.12 0.15
Matches are distributed among these distances:
51 20 0.27
52 26 0.35
53 5 0.07
54 22 0.30
55 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (54 bp):
AATAGTAAAATAATATATAATATATAATAAAATAAAAATATAAGGAATAATGAT
Found at i:34652497 original size:17 final size:16
Alignment explanation
Indices: 34652408--34652520 Score: 69
Period size: 16 Copynumber: 7.3 Consensus size: 16
34652398 TAAAATAAAA
*
34652408 ATATAAGGAATAATAT
1 ATATAATGAATAATAT
*
34652424 ATAT-A-G--TAAAAT
1 ATATAATGAATAATAT
*
34652436 ATATAATGTATAATA-
1 ATATAATGAATAATAT
* * *
34652451 A-ACTTATAAATAAAAT
1 ATA-TAATGAATAATAT
*
34652467 GTATAATG-ATAATAT
1 ATATAATGAATAATAT
34652482 AATATAATGAATAATAT
1 -ATATAATGAATAATAT
**
34652499 ATAATAAAAAATAATAT
1 AT-ATAATGAATAATAT
34652516 ATATA
1 ATATA
34652521 CTGTTTTATA
Statistics
Matches: 74, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
12 9 0.12
13 1 0.01
14 3 0.04
15 16 0.22
16 23 0.31
17 22 0.30
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (16 bp):
ATATAATGAATAATAT
Found at i:34652502 original size:24 final size:24
Alignment explanation
Indices: 34652379--34652513 Score: 80
Period size: 23 Copynumber: 5.5 Consensus size: 24
34652369 AGAATAGTAA
* **
34652379 AATAATATATAATTTATAATA-A-
1 AATAAAATATAATGAATAATATAT
*
34652401 AATAAAAATATAAGGAATAATATAT
1 AAT-AAAATATAATGAATAATATAT
* *
34652426 ATAGTAAAATATATAATGTATAATAAACT
1 A-A-T-AAA-ATATAATGAATAATATA-T
* * * *
34652455 TAT-AAATAAAATGTATAAT-GAT
1 AATAAAATATAATGAATAATATAT
*
34652477 AATATAATATAATGAATAATATAT
1 AATAAAATATAATGAATAATATAT
*
34652501 AATAAAAAATAAT
1 AATAAAATATAAT
34652514 ATATATACTG
Statistics
Matches: 87, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
22 6 0.07
23 28 0.32
24 27 0.31
25 3 0.03
26 1 0.01
27 6 0.07
28 15 0.17
29 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.34
Consensus pattern (24 bp):
AATAAAATATAATGAATAATATAT
Found at i:34654144 original size:44 final size:44
Alignment explanation
Indices: 34654096--34654824 Score: 958
Period size: 44 Copynumber: 16.6 Consensus size: 44
34654086 AAACTCAGGA
* *
34654096 ACGCCAAATCTGTTATCTAT-GATTTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCT-TCGATCTGCTCTCTGACAATACAGAG
*
34654140 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
34654184 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTAACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
34654228 ACACCAAATCTGCTATCTTTGATCTGCTCTCTAACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * * *
34654272 ACGCCAAATCTGTTATC-TCTGATTTGCTCTCTAAAAATATAGAG
1 ACGCCAAATCTGCTATCTTC-GATCTGCTCTCTGACAATACAGAG
* *
34654316 ACGCCAAATCTGCTATCTTTGATCTACTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
34654360 ACGCCAAATCTGTTATCTTCGATCTGTTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
*
34654404 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
34654448 ATGCCAAATCTGCTATCTTTGATCTGCTCTTTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * * *
34654492 ACGCCAAATCTGGTATCTTTGATCTTCTCTCTGAAAATACAAAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * * *
34654536 ACACCAAATCTGTTATCTTCGATATGCTCTCTAATAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * *
34654580 ACGCGAAATCTACTGTCTTCGATCTGCTCTCTGACAATATAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * *
34654624 ATGCCAAATCTACTATCTTCGATCTGTTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * *
34654668 ATGTCAAATCTGCTACCTTTGATCTGCTCTCTGACAATACAGAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * * *
34654712 ACGCCAAATCTGTTAACTTTGATCTGCTCTCTGGCAATACAAAG
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* * * *
34654756 ACGCCAAATCTGCTATCTTCGATCTGTTCTTTGACCATACAGAA
1 ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
* *
34654800 ACGCCAAATCTTCTATCTTTGATCT
1 ACGCCAAATCTGCTATCTTCGATCT
34654825 ATATTGTCCT
Statistics
Matches: 603, Mismatches: 79, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
43 2 0.00
44 600 1.00
45 1 0.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (44 bp):
ACGCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAG
Found at i:34662771 original size:41 final size:40
Alignment explanation
Indices: 34662625--34662870 Score: 334
Period size: 40 Copynumber: 6.1 Consensus size: 40
34662615 CGGAATTTAA
* ** * * *
34662625 CCGGATATAACCACAAGCACCATTGCCTTCGGGTCTTAAC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* *
34662665 CCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
*
34662705 CCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
34662745 CCGGATATTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATA-TAACAACTCGCACGAATGCCTTCGGGTCTTAGC
34662786 CCGGATATTAACAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATA-TAACAACTCGCACGAATGCCTTCGGGTCTTAGC
* * *
34662827 CCGGATATAATC-ACTAGCA-TAATTGCCTTCGGGACTTAGC
1 CCGGATATAA-CAACTCGCACGAA-TGCCTTCGGGTCTTAGC
34662867 CCGG
1 CCGG
34662871 GTATCATTCA
Statistics
Matches: 188, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 2 0.01
40 105 0.56
41 81 0.43
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGC
Found at i:34662865 original size:122 final size:121
Alignment explanation
Indices: 34662648--34662870 Score: 358
Period size: 122 Copynumber: 1.8 Consensus size: 121
34662638 CAAGCACCAT
* *
34662648 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
* *
34662713 AACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATTAACAACTCGCACGAA
66 AACAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATTAACAACTCGCACGAA
*
34662769 TGCCTTCGGGTCTTAGCCCGGATATTAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATA
1 TGCCTTCGGGTCTTAACCCGGATA-TAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATA
* *
34662834 TAATC-ACTAGCATAATTGCCTTCGGGACTTAGCCCGG
65 TAA-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
34662871 GTATCATTCA
Statistics
Matches: 93, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
121 22 0.24
122 70 0.75
123 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (121 bp):
TGCCTTCGGGTCTTAACCCGGATATAACAACTCGCACGAATGCCTTCGGGTCTTAGCCCGGATAT
AACAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATTAACAACTCGCACGAA
Found at i:34668984 original size:18 final size:18
Alignment explanation
Indices: 34668960--34669005 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
34668950 TACGAATAAT
34668960 AAAATAACATA-AAGATA
1 AAAATAACATATAAGATA
34668977 ACAAATAATC-TATAAGATA
1 A-AAATAA-CATATAAGATA
*
34668996 AAAGTAACAT
1 AAAATAACAT
34669006 GTTAAAACAA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
17 2 0.08
18 14 0.58
19 8 0.33
ACGTcount: A:0.63, C:0.09, G:0.07, T:0.22
Consensus pattern (18 bp):
AAAATAACATATAAGATA
Found at i:34669076 original size:14 final size:14
Alignment explanation
Indices: 34669039--34669070 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
34669029 CAAAAAGGAT
34669039 AAAAAACAA-TT-A
1 AAAAAACAATTTGA
34669051 AAAAAACAATTTGA
1 AAAAAACAATTTGA
34669065 AAAAAA
1 AAAAAA
34669071 ATATTTAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 2 0.11
14 7 0.39
ACGTcount: A:0.75, C:0.06, G:0.03, T:0.16
Consensus pattern (14 bp):
AAAAAACAATTTGA
Found at i:34669353 original size:28 final size:28
Alignment explanation
Indices: 34669326--34669379 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
34669316 ATAATTTATA
34669326 ATAAAATAAAA-ATATAAGGAATAATAT
1 ATAAAATAAAATATATAAGGAATAATAT
* * * *
34669353 ATATAGTAAAATATATAATGTATAATA
1 ATAAAATAAAATATATAAGGAATAATA
34669380 AAACTTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.31
Consensus pattern (28 bp):
ATAAAATAAAATATATAAGGAATAATAT
Found at i:34686865 original size:33 final size:33
Alignment explanation
Indices: 34686803--34686866 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
34686793 TTATACCTGA
* *
34686803 AACTGTATCTGAATGGGCTAAAGTCTAAACTGT
1 AACTGTATCTAAATGGGCTAAAGGCTAAACTGT
34686836 AACTGTATCTAAATGGGCT-AAGGCATAAACT
1 AACTGTATCTAAATGGGCTAAAGGC-TAAACT
34686867 ATACCTGAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 4 0.14
33 24 0.86
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (33 bp):
AACTGTATCTAAATGGGCTAAAGGCTAAACTGT
Found at i:34688073 original size:39 final size:40
Alignment explanation
Indices: 34688030--34688139 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
34688020 TTAAATTATG
* *
34688030 AATGTTATGTGATTATACGAGTATTGTGATATATGCTT-A
1 AATGTTATGTGATTATATGAGTATTGTGATATAAGCTTGA
** * *
34688069 AATGTTATGCAATTATATGAATATTATGATATAAGCTTGA
1 AATGTTATGTGATTATATGAGTATTGTGATATAAGCTTGA
34688109 AA-GTTAT-TAGATTATATGAGTATTGTGATAT
1 AATGTTATGT-GATTATATGAGTATTGTGATAT
34688140 TTGAATATTG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 56 0.95
40 3 0.05
ACGTcount: A:0.35, C:0.04, G:0.18, T:0.43
Consensus pattern (40 bp):
AATGTTATGTGATTATATGAGTATTGTGATATAAGCTTGA
Found at i:34689041 original size:33 final size:33
Alignment explanation
Indices: 34688996--34689060 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
34688986 CCTAGTATCG
34688996 ATACCTACGTGATTGTCTTGAAAATTTTGCTAT
1 ATACCTACGTGATTGTCTTGAAAATTTTGCTAT
*
34689029 ATACCTATGTGATTGTCTTGAAAATTTTGCTA
1 ATACCTACGTGATTGTCTTGAAAATTTTGCTA
34689061 AGTGGTCCTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.43
Consensus pattern (33 bp):
ATACCTACGTGATTGTCTTGAAAATTTTGCTAT
Found at i:34691406 original size:91 final size:90
Alignment explanation
Indices: 34691259--34691457 Score: 204
Period size: 91 Copynumber: 2.2 Consensus size: 90
34691249 TTTAATTGCA
* ** * * * * **
34691259 AACACTGGTGGTTTATCCGCAAATTAT--TGGTAGCTTTTATCTGCAAACCCGCTGTGTATTTAC
1 AACACTAGTGGTTTATCCATAATTTATACTGGCAGCTATTATCTACAAACCCGCTGTGTATCCAC
** *
34691322 AACTACTGGCATTGTATTAACCTGC
66 AACTACTGGCAGCGTATTAACCTAC
* * * *
34691347 AAGCACTCGTTGTTTATCCATAATTTATACTGGCAGCTATTATCTACAAACTCGTTGTGTATCCA
1 AA-CACTAGTGGTTTATCCATAATTTATACTGGCAGCTATTATCTACAAACCCGCTGTGTATCCA
* * *
34691412 CAATTATTGGTAGCGTATTAACCTAC
65 CAACTACTGGCAGCGTATTAACCTAC
34691438 AACACTAGTGGTTTATCCAT
1 AACACTAGTGGTTTATCCAT
34691458 TTACTGGAGT
Statistics
Matches: 88, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
88 2 0.02
89 20 0.23
90 16 0.18
91 50 0.57
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (90 bp):
AACACTAGTGGTTTATCCATAATTTATACTGGCAGCTATTATCTACAAACCCGCTGTGTATCCAC
AACTACTGGCAGCGTATTAACCTAC
Found at i:34691455 original size:45 final size:47
Alignment explanation
Indices: 34691335--34691456 Score: 128
Period size: 45 Copynumber: 2.7 Consensus size: 47
34691325 TACTGGCATT
* *
34691335 GTATTAACCTGCAAGCACTCGTTGTTTATCCATAATTTATACTGGCAGC
1 GTATTAACCTACAA-CACTCGTTGTTTATCCACAATTTATA-TGGCAGC
* * *
34691384 -TATT-ATCTACAA-ACTCGTTGTGTATCCACAA-TTAT-TGGTAGC
1 GTATTAACCTACAACACTCGTTGTTTATCCACAATTTATATGGCAGC
* *
34691426 GTATTAACCTACAACACTAGTGGTTTATCCA
1 GTATTAACCTACAACACTCGTTGTTTATCCA
34691457 TTTACTGGAG
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
42 6 0.10
43 4 0.07
44 11 0.18
45 30 0.49
47 6 0.10
48 4 0.07
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (47 bp):
GTATTAACCTACAACACTCGTTGTTTATCCACAATTTATATGGCAGC
Found at i:34692018 original size:10 final size:11
Alignment explanation
Indices: 34691991--34692020 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
34691981 AACCACATAT
34691991 CAAATGTTTAA
1 CAAATGTTTAA
34692002 CAAATGTTTAA
1 CAAATGTTTAA
34692013 -AAATGTTT
1 CAAATGTTT
34692021 GTTTTCAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (11 bp):
CAAATGTTTAA
Found at i:34696026 original size:15 final size:15
Alignment explanation
Indices: 34696002--34696041 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
34695992 TAAATTATGC
* *
34696002 CTTTAATCATGGTAA
1 CTTTAGTCATAGTAA
34696017 CTTTAGTCATAGTAA
1 CTTTAGTCATAGTAA
34696032 CTTTAGTCAT
1 CTTTAGTCAT
34696042 TGCTTGAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (15 bp):
CTTTAGTCATAGTAA
Found at i:34698641 original size:22 final size:22
Alignment explanation
Indices: 34698615--34698663 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
34698605 CAATGTTGCT
34698615 GTTATCATATGGTGTAATATTA
1 GTTATCATATGGTGTAATATTA
* *
34698637 GTTATCATGTGTTGTAATATTA
1 GTTATCATATGGTGTAATATTA
34698659 GTTAT
1 GTTAT
34698664 GCACTTGGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.49
Consensus pattern (22 bp):
GTTATCATATGGTGTAATATTA
Found at i:34698723 original size:68 final size:68
Alignment explanation
Indices: 34698578--34698726 Score: 203
Period size: 68 Copynumber: 2.2 Consensus size: 68
34698568 ATACTTTTAA
* * *
34698578 TGTGGTGATATTAGTTATGCACTTGGACAATGTTGCTGTTATCATATGGTGTAATATTAGTTATC
1 TGTGGTAATATTAGTTATGCACTTGGACAATGTTGCTGTTATCATATGGTGTAATACTAATTATC
34698643 ATG
66 ATG
* * * *
34698646 TGTTGTAATATTAGTTATGCACTTGGATAATGTTGTTGTTATCATGTGGTGTAATACTAATTATG
1 TGTGGTAATATTAGTTATGCACTTGGACAATGTTGCTGTTATCATATGGTGTAATACTAATTAT-
34698711 CAT-
65 CATG
34698714 T-TGGATAATATTA
1 TGTGG-TAATATTA
34698727 TTAATTTCTA
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
67 2 0.03
68 66 0.93
69 3 0.04
ACGTcount: A:0.27, C:0.07, G:0.21, T:0.44
Consensus pattern (68 bp):
TGTGGTAATATTAGTTATGCACTTGGACAATGTTGCTGTTATCATATGGTGTAATACTAATTATC
ATG
Found at i:34705997 original size:19 final size:19
Alignment explanation
Indices: 34705973--34706010 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
34705963 AAAATAAATA
34705973 AAGATTAGAAGGGGTTTTC
1 AAGATTAGAAGGGGTTTTC
*
34705992 AAGATTTGAAGGGGTTTTC
1 AAGATTAGAAGGGGTTTTC
34706011 GACAAAAGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.05, G:0.32, T:0.34
Consensus pattern (19 bp):
AAGATTAGAAGGGGTTTTC
Found at i:34706512 original size:22 final size:22
Alignment explanation
Indices: 34706453--34706509 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 22
34706443 ATCTTCAATT
34706453 ATATGCAATCTT---AGATATG
1 ATATGCAATCTTAGAAGATATG
34706472 ATATGCAATCTTAGAAGATATG
1 ATATGCAATCTTAGAAGATATG
* *
34706494 ATTTTGTAATCTTAGA
1 A-TATGCAATCTTAGA
34706510 GATTTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 12 0.38
22 8 0.25
23 12 0.38
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.39
Consensus pattern (22 bp):
ATATGCAATCTTAGAAGATATG
Found at i:34706801 original size:18 final size:17
Alignment explanation
Indices: 34706778--34706811 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
34706768 TTTCCCTGAT
*
34706778 TTTTTTTATATATTTTAA
1 TTTTTTAATA-ATTTTAA
34706796 TTTTTTAATAATTTTA
1 TTTTTTAATAATTTTA
34706812 GTATCATCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTTAATAATTTTAA
Found at i:34715353 original size:220 final size:220
Alignment explanation
Indices: 34714971--34716220 Score: 2005
Period size: 220 Copynumber: 5.7 Consensus size: 220
34714961 CAGGCTAAAG
* * * * * * ** *
34714971 CATAGCAGATTTGACCTTCAAGTGTTTACGCTGAAGCGGATCCAAGATGATTTAACATCCCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTGTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * * *
34715036 TTGTCAGAAAACAAATCGAAGAAACAGATTTGGCATCTCCATATTAGACGAAGAGCAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* * *
34715101 ACATAGCAGATCTAACCTTTGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGTATCCTT
131 ACATAGCAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
34715166 GCGTTGACAAGGAGCAGATCGAAGA
196 GCGTTGACAAGGAGCAGATCGAAGA
* *
34715191 CATAGCAAATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTGTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * * *
34715256 CTATCAGAGAACAAATCAAAGAAATAGATTTGGGATCTCCATATTCGACGGAGAGCAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
34715321 ACATAGTAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
* *
34715386 GTGTTGATAAGGAGCAGATCGAAGA
196 GCGTTGACAAGGAGCAGATCGAAGA
** * *
34715411 CATAATAGATTTGGCTTTCACGTGTGTACACTGAAGCAGATCTAAGATGATTTGGCATCTCTATA
1 CATAGCAGATTTGGCTTTCACGTGTGTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* *
34715476 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATAGTCGACGGAGAGTAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
34715541 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
34715606 GCGTTGACAAGGAGCAGATCGAAGA
196 GCGTTGACAAGGAGCAGATCGAAGA
* * *
34715631 CATAGAAGATTTGGCTTTCACGTGTGTACACTGAAGTAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTGTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
*
34715696 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCGTATTCGACGGAGAGCAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* * *
34715761 ACATAGCAGATTTAACCTTCAGATATTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
*
34715826 GCGTTGACAAGGAGCAGATCAAAGA
196 GCGTTGACAAGGAGCAGATCGAAGA
*
34715851 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTGTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * * ** *
34715916 CTGTCAGAGAACAAATCAAAGAAACAGATTTGCCATCTCTATATTTTACGGAGAGCAAATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
34715981 ACATAGCAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
* *
34716046 GCATTGACAAGAAGCAGATCGAAGA
196 GCGTTGACAAGGAGCAGATCGAAGA
* *
34716071 CATAGCAGATTTGGCTTTCATGTGTGTATGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGGCTTTCACGTGTGTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
* * *
34716136 TTGTCAGAGAATAAATCGAAGAAAAAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
34716201 ACATAGCAGATCTGACCTTC
131 ACATAGCAGATCTAACCTTC
34716221 ATTGAAGCAG
Statistics
Matches: 950, Mismatches: 80, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
220 950 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (220 bp):
CATAGCAGATTTGGCTTTCACGTGTGTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
ACATAGCAGATCTAACCTTCGGATCTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
GCGTTGACAAGGAGCAGATCGAAGA
Found at i:34716272 original size:78 final size:78
Alignment explanation
Indices: 34716162--34716531 Score: 600
Period size: 78 Copynumber: 4.7 Consensus size: 78
34716152 CGAAGAAAAA
* * *
34716162 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
34716227 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
34716240 GATTTGGCATCTCTGTATTAGGCGGGGAGCAGATCAAAGACATAGCAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
34716304 AGCAGATCTAAGAT
65 AGCAGATCCAAGAT
* *
34716318 GATTTGGCATCTTTATATTAGACGGGGAGCAGATCGAAGACATATCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
34716383 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
34716396 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGA
*
34716460 AGCAGATCTAAGAT
65 AGCAGATCCAAGAT
*
34716474 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTT
34716532 TATGTGTTTA
Statistics
Matches: 269, Mismatches: 19, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
77 2 0.01
78 265 0.99
79 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:34716673 original size:44 final size:45
Alignment explanation
Indices: 34716557--34716747 Score: 233
Period size: 45 Copynumber: 4.3 Consensus size: 45
34716547 AAATAGATCC
*
34716557 AAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * *
34716602 AAGATAACAGATTTGGCATCTCTGTATTAGACGGTGAGTAAATTG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
** ** * *
34716647 AAGA-AGTAGATTTGGTGTCTCTGTATTAGATGGGGAGCAGATCG
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
* * *
34716691 AAGATAACAGATTTGGCGTCTCTATATTAGACGGGGAGCAGATC-
1 AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
*
34716735 AACGATAGCAGAT
1 AA-GATAACAGAT
34716748 ATCACCTTCC
Statistics
Matches: 125, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
44 37 0.30
45 88 0.70
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (45 bp):
AAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCG
Found at i:34717167 original size:35 final size:37
Alignment explanation
Indices: 34717096--34717193 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
34717086 ATAATCTTCA
34717096 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
34717134 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
34717169 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
34717194 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:34717193 original size:17 final size:19
Alignment explanation
Indices: 34717096--34717186 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
34717086 ATAATCTTCA
34717096 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34717115 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34717134 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34717151 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
34717169 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
34717187 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:34717499 original size:18 final size:18
Alignment explanation
Indices: 34717476--34717510 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
34717466 GTTTCCCTGA
34717476 TTTTTTT-ATATATTTTAT
1 TTTTTTTAATA-ATTTTAT
34717494 TTTTTTTAATAATTTTA
1 TTTTTTTAATAATTTTA
34717511 GTATCATATC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTAATAATTTTAT
Found at i:34719279 original size:21 final size:22
Alignment explanation
Indices: 34719253--34719293 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
34719243 TAAATTAATT
34719253 ATTTAAA-AATTTTATTTTTAA
1 ATTTAAAGAATTTTATTTTTAA
*
34719274 ATTTAAAGAGTTTTATTTTT
1 ATTTAAAGAATTTTATTTTT
34719294 TCATAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (22 bp):
ATTTAAAGAATTTTATTTTTAA
Found at i:34723589 original size:16 final size:16
Alignment explanation
Indices: 34723561--34723627 Score: 61
Period size: 15 Copynumber: 4.3 Consensus size: 16
34723551 CTTGTTTTTA
34723561 TATTATATATTATAAAAT
1 TATT-TATATTAT-AAAT
*
34723579 TATTT-TATTATATAT
1 TATTTATATTATAAAT
*
34723594 TATTTATATTAT-TAT
1 TATTTATATTATAAAT
*
34723609 TA-TT-TATTATATAT
1 TATTTATATTATAAAT
34723623 TATTT
1 TATTT
34723628 TTCACAAGTT
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
13 6 0.13
14 7 0.16
15 15 0.33
16 12 0.27
17 1 0.02
18 4 0.09
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TATTTATATTATAAAT
Found at i:34723597 original size:3 final size:3
Alignment explanation
Indices: 34723577--34723803 Score: 73
Period size: 3 Copynumber: 73.3 Consensus size: 3
34723567 ATATTATAAA
34723577 ATT ATT -TT ATT ATAT ATT ATT -TAT ATT ATT ATT ATTT ATT ATAT ATT
1 ATT ATT ATT ATT AT-T ATT ATT AT-T ATT ATT ATT A-TT ATT AT-T ATT
* ** * *
34723624 ATT TTT CACA AGTT ATT ATT ATT -TT A-C ATC ATT ATTT ATAT ATT ATT
1 ATT ATT -ATT A-TT ATT ATT ATT ATT ATT ATT ATT A-TT AT-T ATT ATT
* *
34723671 A-T ATT A-T ATGT -TT ATT ATAT ATT ATAT ATT ATT TTT A-T ATAT ATG
1 ATT ATT ATT AT-T ATT ATT AT-T ATT AT-T ATT ATT ATT ATT AT-T ATT
* * *
34723716 CTT -TT A-T ATT ATAT ATT ATA ATT ATT -TT ATAT ATT ATT AAGTC ATT
1 ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT AT-T ATT ATT -A-TT ATT
* * * *
34723762 TTT A-T ATT ATT ATAC ATT TTT ATCT ATAT ATT ATT ATC ATT A
1 ATT ATT ATT ATT AT-T ATT ATT AT-T AT-T ATT ATT ATT ATT A
34723804 AAGATTTTAA
Statistics
Matches: 168, Mismatches: 26, Indels: 60
0.66 0.10 0.24
Matches are distributed among these distances:
2 21 0.12
3 103 0.61
4 43 0.26
5 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:34723670 original size:30 final size:30
Alignment explanation
Indices: 34723577--34723798 Score: 108
Period size: 29 Copynumber: 7.3 Consensus size: 30
34723567 ATATTATAAA
*
34723577 ATTATT-TTATTATATATTATTTATATTATT
1 ATTATTATT-TTATATATTATTTATACTATT
* * *
34723607 ATTATT-TATTATATATTATTTTTCACAAGTT
1 ATTATTATTTTATATATTATTTAT-ACTA-TT
*
34723638 ATTATTATTTTACATCATTATTTATA-TATT
1 ATTATTATTTTATAT-ATTATTTATACTATT
* * *
34723668 ATTA-TATTATATGT-TTATTATATATTATAT
1 ATTATTATTTTATATATTATT-TATACTAT-T
34723698 ATTATT-TTTATATATATGCTTTTATATTATA-TATT
1 ATTATTATTT-TATATA-----TTAT-TTATACTATT
* *
34723733 ATAATTATTTTATATATTA-TTA-AGTCATT
1 ATTATTATTTTATATATTATTTATACT-ATT
* *
34723762 TTTA-TATTATTATACATT-TTTAT-CTATAT
1 ATTATTATT-TTATATATTATTTATACTAT-T
34723791 ATTATTAT
1 ATTATTAT
34723799 CATTAAAGAT
Statistics
Matches: 149, Mismatches: 19, Indels: 48
0.69 0.09 0.22
Matches are distributed among these distances:
27 6 0.04
28 14 0.09
29 45 0.30
30 28 0.19
31 14 0.09
32 7 0.05
33 8 0.05
35 12 0.08
36 6 0.04
37 8 0.05
38 1 0.01
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (30 bp):
ATTATTATTTTATATATTATTTATACTATT
Found at i:34723723 original size:25 final size:25
Alignment explanation
Indices: 34723659--34723747 Score: 87
Period size: 25 Copynumber: 3.6 Consensus size: 25
34723649 ACATCATTAT
34723659 TTATATATTATTATATTATATGTTTA
1 TTATATATT-TTATATTATATGTTTA
*
34723685 TTATATATTATATATTAT-T-TTTA
1 TTATATATTTTATATTATATGTTTA
* *
34723708 TATATATGCTTTTATATTATAT-ATTA
1 T-TATAT-ATTTTATATTATATGTTTA
*
34723734 TAAT-TATTTTATAT
1 TTATATATTTTATAT
34723748 ATTATTAAGT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
23 13 0.24
24 7 0.13
25 20 0.37
26 14 0.26
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (25 bp):
TTATATATTTTATATTATATGTTTA
Found at i:34723769 original size:19 final size:19
Alignment explanation
Indices: 34723724--34723773 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
34723714 TGCTTTTATA
*
34723724 TTATATATTA-TAATTATT
1 TTATATATTATTAATCATT
34723742 TTATATATTATTAAGTCATT
1 TTATATATTATTAA-TCATT
34723762 TT-TATATTATTA
1 TTATATATTATTA
34723774 TACATTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 10 0.34
19 13 0.45
20 6 0.21
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (19 bp):
TTATATATTATTAATCATT
Found at i:34723861 original size:24 final size:25
Alignment explanation
Indices: 34723819--34723868 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
34723809 TTTAAACTTG
*
34723819 TATTATATATTTATCTTTATTTATA
1 TATTATATAATTATCTTTATTTATA
*
34723844 TATTA-ATAATTATTTTTATTTATA
1 TATTATATAATTATCTTTATTTATA
34723868 T
1 T
34723869 TCTATTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (25 bp):
TATTATATAATTATCTTTATTTATA
Found at i:34727877 original size:15 final size:15
Alignment explanation
Indices: 34727841--34727890 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
34727831 CGATATCCTT
34727841 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
34727855 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
34727871 TTT-CATCAT-AT-CA
1 TTTGCATC-TCATGCA
34727884 TTTGCAT
1 TTTGCAT
34727891 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 10 0.31
16 7 0.22
ACGTcount: A:0.24, C:0.22, G:0.10, T:0.44
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:34731088 original size:26 final size:26
Alignment explanation
Indices: 34731059--34731114 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
34731049 TGGTACAAAT
34731059 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34731085 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34731111 TGAT
1 TGAT
34731115 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34732623 original size:26 final size:26
Alignment explanation
Indices: 34732557--34732632 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
34732547 AAAAGTAGCT
* * *
34732557 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
34732585 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
*
34732611 AAATTACCATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
34732633 GTTAATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:34732776 original size:27 final size:26
Alignment explanation
Indices: 34732736--34732872 Score: 175
Period size: 27 Copynumber: 5.1 Consensus size: 26
34732726 AGGAAGCGTC
*
34732736 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
34732763 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
34732790 CTGGTGGTTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
34732817 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
34732844 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
34732871 CT
1 CT
34732873 AGTGACTTCG
Statistics
Matches: 96, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
26 10 0.10
27 84 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:34732818 original size:54 final size:53
Alignment explanation
Indices: 34732736--34732872 Score: 220
Period size: 54 Copynumber: 2.5 Consensus size: 53
34732726 AGGAAGCGTC
34732736 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
34732790 CTGGTGGTTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
34732844 CTGGTGGCTCTGCCACAATATCTGTATCT
1 CTGGTGGCTATGCCACATTATCTG-ATCT
34732873 AGTGACTTCG
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.09
54 70 0.91
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:34737446 original size:54 final size:53
Alignment explanation
Indices: 34737363--34737527 Score: 233
Period size: 54 Copynumber: 3.1 Consensus size: 53
34737353 AGGAAGCGTC
*
34737363 CTGGTGGCTATACCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATACCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
34737417 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTATACCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* * *
34737471 CTGGTGGCTCTACCACATATATCTGTTCTGGTGTCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTATACCACAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-T
34737525 CTG
1 CTG
34737528 ATGACTTCGT
Statistics
Matches: 100, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 10 0.10
54 90 0.90
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (53 bp):
CTGGTGGCTATACCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:34737498 original size:81 final size:81
Alignment explanation
Indices: 34737363--34737527 Score: 226
Period size: 81 Copynumber: 2.0 Consensus size: 81
34737353 AGGAAGCGTC
*
34737363 CTGGTGGCTATACCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTAT
1 CTGGTGGCTATACCACAATTATCTAATCTGGTGGCTCTACCACATATATCTGTTCTGGTGGCTAT
*
34737428 GCCACGATTATCTG-AT
66 GCCAC-AATATCTGTAT
* * ** * *
34737444 CTGGTGGCTTTGCCAC-ATATATCTGTTCTGGTGGCTCTACCACATATATCTGTTCTGGTGTCTC
1 CTGGTGGCTATACCACAAT-TATCTAATCTGGTGGCTCTACCACATATATCTGTTCTGGTGGCTA
34737508 TGCCACAATATCTGTAT
65 TGCCACAATATCTGTAT
34737525 CTG
1 CTG
34737528 ATGACTTCGT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 9 0.12
81 65 0.88
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATACCACAATTATCTAATCTGGTGGCTCTACCACATATATCTGTTCTGGTGGCTAT
GCCACAATATCTGTAT
Found at i:34737526 original size:32 final size:27
Alignment explanation
Indices: 34737363--34737527 Score: 183
Period size: 27 Copynumber: 6.1 Consensus size: 27
34737353 AGGAAGCGTC
* **
34737363 CTGGTGGCTATACCACA-ATTATCTAAT
1 CTGGTGGCTCTACCACATA-TATCTGTT
*
34737390 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTACCACATATATCTGTT
* * *
34737417 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTACCAC-ATATATCTGTT
* *
34737444 CTGGTGGCTTTGCCACATATATCTGTT
1 CTGGTGGCTCTACCACATATATCTGTT
34737471 CTGGTGGCTCTACCACATATATCTGTT
1 CTGGTGGCTCTACCACATATATCTGTT
* *
34737498 CTGGTGTCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTACCACATATATCTGT-T
34737525 CTG
1 CTG
34737528 ATGACTTCGT
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
26 10 0.08
27 109 0.89
28 3 0.02
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTACCACATATATCTGTT
Done.