Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 118 of 335
Found at i:35908543 original size:26 final size:27
Alignment explanation
Indices: 35908500--35908550 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
35908490 ATATACCAAC
*
35908500 TTTTTAAAAAATATAAAACAATTTAAA
1 TTTTTAAAAAATACAAAACAATTTAAA
*
35908527 TTTTTAAGAAA-ACAAAACAATTTA
1 TTTTTAAAAAATACAAAACAATTTA
35908551 TTTTAAAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.35
Consensus pattern (27 bp):
TTTTTAAAAAATACAAAACAATTTAAA
Found at i:35910496 original size:15 final size:16
Alignment explanation
Indices: 35910478--35910516 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
35910468 AAGATATTTT
35910478 AACAAATAAAATTAA-
1 AACAAATAAAATTAAC
*
35910493 AACAAATGAAATTAAC
1 AACAAATAAAATTAAC
35910509 AACAAATA
1 AACAAATA
35910517 TAGTGGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.69, C:0.10, G:0.03, T:0.18
Consensus pattern (16 bp):
AACAAATAAAATTAAC
Found at i:35919069 original size:7 final size:7
Alignment explanation
Indices: 35919057--35919081 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
35919047 TAGTAATCTT
35919057 AAATTTA
1 AAATTTA
35919064 AAATTTA
1 AAATTTA
35919071 AAATTTA
1 AAATTTA
35919078 AAAT
1 AAAT
35919082 AAATAATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (7 bp):
AAATTTA
Found at i:35919285 original size:21 final size:21
Alignment explanation
Indices: 35919239--35919290 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
35919229 TAAATAATAT
* *
35919239 TTATATTTATGACAATATTAC
1 TTATTTTTATGACAATATTAA
*
35919260 TTATTTTTATGATAAT-TTAA
1 TTATTTTTATGACAATATTAA
35919280 TATATTTTTAT
1 T-TATTTTTAT
35919291 TTTCTTACAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (21 bp):
TTATTTTTATGACAATATTAA
Found at i:35919325 original size:20 final size:20
Alignment explanation
Indices: 35919302--35919344 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
35919292 TTCTTACATA
35919302 AAAAATTATATAAAATTTTC
1 AAAAATTATATAAAATTTTC
* * **
35919322 AAAATTTATCTAACCTTTTC
1 AAAAATTATATAAAATTTTC
35919342 AAA
1 AAA
35919345 TTTTAGATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATTATATAAAATTTTC
Found at i:35921393 original size:28 final size:27
Alignment explanation
Indices: 35921360--35921415 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 27
35921350 ATGAAAAGAT
35921360 AGTTTAAATA-CAAAATTAAGATAAAAAA
1 AGTTTAAATATCAAAATTAA-A-AAAAAA
35921388 AGTTTAAATATCAAAATTAAAAAAAAA
1 AGTTTAAATATCAAAATTAAAAAAAAA
35921415 A
1 A
35921416 TGGTATTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 7 0.26
28 11 0.41
29 9 0.33
ACGTcount: A:0.66, C:0.04, G:0.05, T:0.25
Consensus pattern (27 bp):
AGTTTAAATATCAAAATTAAAAAAAAA
Found at i:35921478 original size:3 final size:3
Alignment explanation
Indices: 35921470--35921498 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
35921460 TTATTAAAGA
35921470 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
35921499 CTACTAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:35924299 original size:20 final size:20
Alignment explanation
Indices: 35924274--35924319 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
35924264 ATTAGGCCTT
35924274 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
35924294 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
35924313 GCCCATA
1 GCCCATA
35924320 ACAAAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:35924972 original size:8 final size:8
Alignment explanation
Indices: 35924959--35924988 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
35924949 AATGTCAGCT
35924959 TTTCGGCA
1 TTTCGGCA
35924967 TTTCGGCA
1 TTTCGGCA
*
35924975 TTTCGGCT
1 TTTCGGCA
35924983 TTTCGG
1 TTTCGG
35924989 TTTTTGCTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.07, C:0.23, G:0.27, T:0.43
Consensus pattern (8 bp):
TTTCGGCA
Found at i:35934169 original size:3 final size:3
Alignment explanation
Indices: 35934136--35934186 Score: 59
Period size: 3 Copynumber: 17.3 Consensus size: 3
35934126 CAACAAATTT
* * * *
35934136 TAA TAT TAA TAT TAA TAA -AA TAT TTA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
35934183 TAA T
1 TAA T
35934187 GATTAAATGC
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:35936106 original size:22 final size:22
Alignment explanation
Indices: 35936081--35936122 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
35936071 TAATCATATA
35936081 ATAAATTATTAATATAATAAGT
1 ATAAATTATTAATATAATAAGT
* * *
35936103 ATAATTTATTATTTTAATAA
1 ATAAATTATTAATATAATAA
35936123 ATTATTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAGT
Found at i:35936184 original size:16 final size:17
Alignment explanation
Indices: 35936148--35936184 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
35936138 AATTTTATTT
*
35936148 TAATAATAAATTTTAAA
1 TAATAATAAATATTAAA
35936165 -AATAAT-AATATTAAA
1 TAATAATAAATATTAAA
35936180 TAATA
1 TAATA
35936185 TTATTCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TAATAATAAATATTAAA
Found at i:35936237 original size:15 final size:15
Alignment explanation
Indices: 35936217--35936273 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
35936207 ATTCAACATT
35936217 AATATTTTAATAATA
1 AATATTTTAATAATA
*
35936232 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
35936251 AATATATTAATAATA
1 AATATTTTAATAATA
*
35936266 AATGTTTT
1 AATATTTT
35936274 GTAGTATAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:35938701 original size:39 final size:39
Alignment explanation
Indices: 35938656--35938737 Score: 155
Period size: 39 Copynumber: 2.1 Consensus size: 39
35938646 ATGTGTTAGC
*
35938656 TTTTAGTCTAACGTGGTATTGTATTTGATAAAATGTATA
1 TTTTAGTCTAACATGGTATTGTATTTGATAAAATGTATA
35938695 TTTTAGTCTAACATGGTATTGTATTTGATAAAATGTATA
1 TTTTAGTCTAACATGGTATTGTATTTGATAAAATGTATA
35938734 TTTT
1 TTTT
35938738 TTAATATCTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.30, C:0.05, G:0.16, T:0.49
Consensus pattern (39 bp):
TTTTAGTCTAACATGGTATTGTATTTGATAAAATGTATA
Found at i:35940106 original size:15 final size:14
Alignment explanation
Indices: 35940086--35940140 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
35940076 TAGCATTATT
35940086 TATTATTATATTAAC
1 TATTATTATATT-AC
*
35940101 TGTTATTATTATTAC
1 TATTATTA-TATTAC
*
35940116 TATTATCATATT-C
1 TATTATTATATTAC
*
35940129 -ATTAATATATTA
1 TATTATTATATTA
35940141 TTATCATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
12 9 0.27
13 1 0.03
14 4 0.12
15 15 0.45
16 4 0.12
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (14 bp):
TATTATTATATTAC
Found at i:35952550 original size:43 final size:42
Alignment explanation
Indices: 35952360--35952597 Score: 192
Period size: 43 Copynumber: 5.5 Consensus size: 42
35952350 ATTCATAAGC
* * * * *
35952360 CTTAACCCCTAAGCAGTAGGGTAGCAG-GCTGAAGATTTACAAAT
1 CTTAACCCCTAAGCAGTAGGGAAACAGATC-GAAGA-TGA-AGAT
* * *
35952404 CTTAACCCCCAAAGCAGTAGGGAAACAGATCGAAGACGAAGGGT
1 CTTAA-CCCCTAAGCAGTAGGGAAACAGATCGAAGATGAA-GAT
* * * * * *
35952448 CTTAAACCCCTAATCGGTAGGGTAACAGACCGAA-TTGCAGAT
1 CTT-AACCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* *
35952490 CTTATCTCCCTAGGCAGTAGGGAAACAGATCGAAGATGAAGAT
1 CTTAAC-CCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
* * * **
35952533 CTTAACCTCCTAAGCAGTAGGGAAACAGATCAAAGAAGATGGGC
1 CTTAACC-CCTAAGCAGTAGGGAAACAGATCGAAGATGA-AGAT
35952577 CTTAACCCCTAAGCAGTAGGG
1 CTTAACCCCTAAGCAGTAGGG
35952598 TAATAGCTGA
Statistics
Matches: 154, Mismatches: 32, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
41 2 0.01
42 28 0.18
43 56 0.36
44 41 0.27
45 26 0.17
46 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.18
Consensus pattern (42 bp):
CTTAACCCCTAAGCAGTAGGGAAACAGATCGAAGATGAAGAT
Found at i:35952881 original size:177 final size:179
Alignment explanation
Indices: 35952529--35953161 Score: 1127
Period size: 179 Copynumber: 3.6 Consensus size: 179
35952519 TCGAAGATGA
* * * *
35952529 AGATCTTAA-CCTCCTAAGCAGTAGGGAAACAGATCAAAGA-AGATGGGCCTTAA-CCCCTAAGC
1 AGATCTTAATCC-CCTAAGCAGTAGGGAAACAGATCGAAGATA-ATGAGCTTTAACCCCCTAAGT
35952591 AGTAGGGTAAT-AGCTGAAAATTACAGATTTTGTCT-CCTGAAGTTGCAGTGGAACAAATCGAAT
64 AGTAGGGTAATAAGCTGAAAATTACAGATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAAT
35952654 CCAGCGAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTTAT
129 CCAGCGAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTTAT
35952705 AGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAA-CCCCTAAGTAG
1 AGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAACCCCCTAAGTAG
35952769 TAGGGT-ATAAGCTGAAAATTACAGATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAATCC
66 TAGGGTAATAAGCTGAAAATTACAGATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAATCC
35952833 AGCGAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTTAT
131 AGCGAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTTAT
35952882 AGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAACCCCCTAAGTAG
1 AGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAACCCCCTAAGTAG
35952947 TAGGGTAATAAGCTGAAAATTACAGATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAATCC
66 TAGGGTAATAAGCTGAAAATTACAGATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAATCC
*
35953012 GGCGAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTTAT
131 AGCGAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTTAT
35953061 AGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAACCCCCTAAGTAG
1 AGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAACCCCCTAAGTAG
* * *
35953126 TAGGGTAATAAGTTGAAAATTACAGATCTTGCCTCC
66 TAGGGTAATAAGCTGAAAATTACAGATTTTGTCTCC
35953162 TCGAATGCAG
Statistics
Matches: 443, Mismatches: 8, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
175 2 0.00
176 85 0.19
177 135 0.30
178 17 0.04
179 204 0.46
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (179 bp):
AGATCTTAATCCCCTAAGCAGTAGGGAAACAGATCGAAGATAATGAGCTTTAACCCCCTAAGTAG
TAGGGTAATAAGCTGAAAATTACAGATTTTGTCTCCCTGAAGTTGCAGTGGAACAAATCGAATCC
AGCGAATCTTGTCTTCCTGAAGTTGCAGTGAAGCAGATTGAAGATTTAT
Found at i:35953433 original size:85 final size:86
Alignment explanation
Indices: 35953240--35953525 Score: 319
Period size: 86 Copynumber: 3.3 Consensus size: 86
35953230 TTCATAGGAT
* *** * *
35953240 CTTAAACCCCTAAGCAGTAGGGAAACAGACCAAATTGTAGATCTTATCCCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCACCCTAAGCAGTAGTGG
**
35953305 TGTAGATCGAAGAAGAAGAAC
66 AATAGATCGAAGAAGAAGAAC
*
35953326 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCACCCTAAGCAGTAGTGG
* *
35953391 -ACAGATCGAAGACGAAGAAC
66 AATAGATCGAAGAAGAAGAAC
* * * * **
35953411 CTTAAACCCCTAAGCAGTAGGGTAATAGGTTGAGTATACAGATC-TAAAACCCTAAGCAGTAG-G
1 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAAT-TGCAGATCTTATCACCCTAAGCAGTAGTG
* * *
35953474 GAAATAGATCAAAGATGACA-AGC
65 G-AATAGATCGAAGAAGA-AGAAC
* *
35953497 CTTAATCCCTTAAGCAGTAGGGTAACAGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGG
35953526 CTGAAAATTA
Statistics
Matches: 173, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
84 2 0.01
85 64 0.37
86 106 0.61
87 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (86 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTGCAGATCTTATCACCCTAAGCAGTAGTGG
AATAGATCGAAGAAGAAGAAC
Found at i:35955026 original size:15 final size:14
Alignment explanation
Indices: 35955006--35955060 Score: 51
Period size: 15 Copynumber: 3.9 Consensus size: 14
35954996 TAGCATTATT
35955006 TATTATTATATTAAC
1 TATTATTATATT-AC
*
35955021 TGTTATTATTATTAC
1 TATTATTA-TATTAC
*
35955036 TATTATCATATT-C
1 TATTATTATATTAC
*
35955049 -ATTAATATATTA
1 TATTATTATATTA
35955061 TTATCATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
12 9 0.27
13 1 0.03
14 4 0.12
15 15 0.45
16 4 0.12
ACGTcount: A:0.36, C:0.07, G:0.02, T:0.55
Consensus pattern (14 bp):
TATTATTATATTAC
Found at i:35955095 original size:38 final size:39
Alignment explanation
Indices: 35955005--35955096 Score: 93
Period size: 38 Copynumber: 2.4 Consensus size: 39
35954995 GTAGCATTAT
* * * *
35955005 TTATTATTATAT-TAACTGTTATTATTATTACTATTATCA
1 TTATTATTATATAT-ATTATTATCATTATTACTATTACCA
*
35955044 -TATTCATTA-ATATATTATTATCATTTTTACTA-TACCA
1 TTATT-ATTATATATATTATTATCATTATTACTATTACCA
35955081 TTATTATTATATATAT
1 TTATTATTATATATAT
35955097 ATATACCTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
37 8 0.18
38 31 0.70
39 5 0.11
ACGTcount: A:0.35, C:0.09, G:0.01, T:0.55
Consensus pattern (39 bp):
TTATTATTATATATATTATTATCATTATTACTATTACCA
Found at i:35960007 original size:19 final size:18
Alignment explanation
Indices: 35959956--35960008 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
35959946 AAAAATATTA
*
35959956 TATTAATTCTTTATTTAAT
1 TATTAATT-TGTATTTAAT
* *
35959975 TATTCATTTTTATTTAAT
1 TATTAATTTGTATTTAAT
*
35959993 TCTTAAATTTGTATTT
1 TATT-AATTTGTATTT
35960009 TTTGTTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 13 0.45
19 16 0.55
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (18 bp):
TATTAATTTGTATTTAAT
Found at i:35960814 original size:2 final size:2
Alignment explanation
Indices: 35960807--35960833 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
35960797 ATTCGTGTTT
35960807 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
35960834 TAGTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:35960931 original size:15 final size:15
Alignment explanation
Indices: 35960911--35960940 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
35960901 TATTCTTTTA
35960911 ATTAATTAAATTATT
1 ATTAATTAAATTATT
35960926 ATTAATTAAATTATT
1 ATTAATTAAATTATT
35960941 TAATATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
ATTAATTAAATTATT
Found at i:35961099 original size:15 final size:17
Alignment explanation
Indices: 35961075--35961115 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
35961065 TATCATTGTG
35961075 TAATAATAA-TAAA-AT
1 TAATAATAATTAAATAT
*
35961090 TAATATTAATTAAATAT
1 TAATAATAATTAAATAT
35961107 TAATTAATA
1 TAA-TAATA
35961116 TGATAATTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 8 0.38
16 4 0.19
17 5 0.24
18 4 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATAATAATTAAATAT
Found at i:35964982 original size:10 final size:10
Alignment explanation
Indices: 35964967--35965012 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
35964957 TAATTTTAGG
35964967 ATTTAT-TTT
1 ATTTATCTTT
35964976 CATTTATCTTT
1 -ATTTATCTTT
*
35964987 AATTATCTTT
1 ATTTATCTTT
35964997 ATTTAT-TTGT
1 ATTTATCTT-T
35965007 ATTTAT
1 ATTTAT
35965013 ATTTTAGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 2 0.06
10 27 0.84
11 3 0.09
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:36000360 original size:127 final size:126
Alignment explanation
Indices: 35999855--36000361 Score: 699
Period size: 127 Copynumber: 4.0 Consensus size: 126
35999845 GGTCAATCAT
* * *
35999855 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCAGAAATTTTGCTGACATTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
* * * * * * * *
35999920 TTGCTTGAAGAGTTTTTGACATTATTTGTTTAGAAACATCTTATCAAAATTATTTTTTCTG
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAG
**
35999981 GAACTACTGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
* * * * * * * *
36000046 CTGTTTGAAGCATTTTTTACACTATTTATTTAGAAACGTCTTCTCAAGATTATTTTTTCAT
66 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAG
* * * *
36000107 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTATTTTTATTTTGCTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTT-CTGTAATTTTGCTGACAGTGCAT
* *
36000172 CCTACTTGAAGCGTTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATGTTTTCAG
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAG
* * * *
36000234 GAACTACTATAGAAAAAGAGCATCCACGTGGGAGCTTTTTTTTTGTATTTTTACTGACAGTGCAT
1 GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGC-TTTTTTCTGTAATTTTGCTGACAGTGCAT
* *
36000299 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAATGTCATCTCAAAATTATTTTTTCAG
65 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAG
36000361 G
1 G
36000362 GTACAAAATA
Statistics
Matches: 338, Mismatches: 41, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
126 149 0.44
127 183 0.54
128 6 0.02
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTGGGAGCTTTTTTCTGTAATTTTGCTGACAGTGCATC
CTGCTTGAAGCGTTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAG
Found at i:36000475 original size:22 final size:22
Alignment explanation
Indices: 36000420--36000490 Score: 61
Period size: 22 Copynumber: 3.0 Consensus size: 22
36000410 AAAAAAACTG
36000420 AACCCTAATTTAATTAAATTTAACCCTA
1 AACCCTAATTTAATT-AATTT-A----A
*
36000448 AACCCTAATTTAATTTATTTAA
1 AACCCTAATTTAATTAATTTAA
* *
36000470 AACCCTAGTTTACTTAATTTA
1 AACCCTAATTTAATTAATTTA
36000491 TTGAAAACCC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
22 19 0.49
26 1 0.03
27 4 0.10
28 15 0.38
ACGTcount: A:0.39, C:0.18, G:0.01, T:0.41
Consensus pattern (22 bp):
AACCCTAATTTAATTAATTTAA
Found at i:36000543 original size:21 final size:22
Alignment explanation
Indices: 36000517--36000559 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
36000507 TCTAATTTAC
36000517 TTAATTTATTTAA-AACCTAAT
1 TTAATTTATTTAAGAACCTAAT
*
36000538 TTAATTTATTTAAGACCCTAAT
1 TTAATTTATTTAAGAACCTAAT
36000560 AGTTACTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.47
Consensus pattern (22 bp):
TTAATTTATTTAAGAACCTAAT
Found at i:36000603 original size:58 final size:52
Alignment explanation
Indices: 36000527--36000656 Score: 134
Period size: 58 Copynumber: 2.3 Consensus size: 52
36000517 TTAATTTATT
* * *
36000527 TAAAACCTAATTTAATTTATTTAAGACCCTAATAGTTACTTAATTTATTTAAAAACCA
1 TAAACCCTAATTT-ATTTATTTAAGACCATAA-A--T-CCTAATTTATTT-AAAACCA
* *
36000585 TAAACCCTAAATTTATTTATTTAATACCATAAATCCTAATTTATTTAAAACCC
1 TAAACCCT-AATTTATTTATTTAAGACCATAAATCCTAATTTATTTAAAACCA
*
36000638 TAAAACTCTAATTTATTTA
1 T-AAACCCTAATTTATTTA
36000657 ACTTATTTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
53 17 0.27
54 17 0.27
55 1 0.02
57 1 0.02
58 23 0.36
59 5 0.08
ACGTcount: A:0.42, C:0.15, G:0.02, T:0.41
Consensus pattern (52 bp):
TAAACCCTAATTTATTTATTTAAGACCATAAATCCTAATTTATTTAAAACCA
Found at i:36000622 original size:29 final size:29
Alignment explanation
Indices: 36000569--36000631 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
36000559 TAGTTACTTA
36000569 ATTTATTTAAAAACCATAAACCCTAAATTT
1 ATTTATTTAAAAACCATAAACCCT-AATTT
* *
36000599 ATTTATTT-AATACCATAAATCCTAATTT
1 ATTTATTTAAAAACCATAAACCCTAATTT
36000627 ATTTA
1 ATTTA
36000632 AAACCCTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 10 0.32
29 13 0.42
30 8 0.26
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (29 bp):
ATTTATTTAAAAACCATAAACCCTAATTT
Found at i:36000629 original size:24 final size:25
Alignment explanation
Indices: 36000599--36000657 Score: 84
Period size: 24 Copynumber: 2.4 Consensus size: 25
36000589 CCCTAAATTT
* *
36000599 ATTTATTTAATACCATAAATC-CTA
1 ATTTATTTAAAACCATAAAACTCTA
*
36000623 ATTTATTTAAAACCCTAAAACTCTA
1 ATTTATTTAAAACCATAAAACTCTA
36000648 ATTTATTTAA
1 ATTTATTTAA
36000658 CTTATTTAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
24 18 0.58
25 13 0.42
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTTATTTAAAACCATAAAACTCTA
Found at i:36000667 original size:88 final size:88
Alignment explanation
Indices: 36000553--36000758 Score: 254
Period size: 88 Copynumber: 2.3 Consensus size: 88
36000543 TTATTTAAGA
* * *
36000553 CCCTAATAGTTACTTAATTTATTTAAAAACCATAAACCCTAAA-TTTATTTATTTAATACCATAA
1 CCCTAAT--TTACTTAATTTATTTAAAAACCATAAACCCTAAACCTAATTTATTTAAAACCAT-A
36000617 ATCCTAATTTATTTAAAACCCTAAAA-
63 A-CCTAATTTATTTAAAACCCTAAAAC
* * * * * * *
36000643 CTCTAATTTATTTAACTTATTTAAAAACCCTAAATCTTAAACCCTAATTTATTTAAAACCCTAAC
1 CCCTAATTTACTTAATTTATTTAAAAACCATAAACCCTAAA-CCTAATTTATTTAAAACCATAAC
*
36000708 TTAATTTATTTAAAACCCTAAAAC
65 CTAATTTATTTAAAACCCTAAAAC
36000732 CCCTAATTTACTTAATTTATTTAAAAA
1 CCCTAATTTACTTAATTTATTTAAAAA
36000759 TCCTAAAACT
Statistics
Matches: 99, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
88 52 0.53
89 26 0.26
90 21 0.21
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (88 bp):
CCCTAATTTACTTAATTTATTTAAAAACCATAAACCCTAAACCTAATTTATTTAAAACCATAACC
TAATTTATTTAAAACCCTAAAAC
Found at i:36000712 original size:22 final size:22
Alignment explanation
Indices: 36000687--36000728 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
36000677 TCTTAAACCC
36000687 TAATTTATTTAAAACCCTAACT
1 TAATTTATTTAAAACCCTAACT
36000709 TAATTTATTTAAAACCCTAA
1 TAATTTATTTAAAACCCTAA
36000729 AACCCCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATTTATTTAAAACCCTAACT
Found at i:36000782 original size:34 final size:35
Alignment explanation
Indices: 36000709--36000791 Score: 91
Period size: 34 Copynumber: 2.4 Consensus size: 35
36000699 AACCCTAACT
**
36000709 TAATTTATTT-AAAACCCTAAAACCCCTAATTTACT
1 TAATTTATTTAAAAACCCTAAAA-CCCTAATTTAAA
* *
36000744 TAATTTATTTAAAAATCCTAAAA-CTTAATTTAAA
1 TAATTTATTTAAAAACCCTAAAACCCTAATTTAAA
36000778 TAATTT-TTATAAAA
1 TAATTTATT-TAAAA
36000792 CAACACTAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
33 2 0.05
34 19 0.45
35 10 0.24
36 11 0.26
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (35 bp):
TAATTTATTTAAAAACCCTAAAACCCTAATTTAAA
Found at i:36002972 original size:26 final size:27
Alignment explanation
Indices: 36002934--36002992 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 27
36002924 TCATAATTAT
* *
36002934 TTATTTTAGTTTTATGTAT-TACAAAA
1 TTATATTAGTTTTATGAATATACAAAA
* *
36002960 TTATATTATTTTTATGAATATATAAAA
1 TTATATTAGTTTTATGAATATACAAAA
36002987 -TATATT
1 TTATATT
36002993 TAAATATTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (27 bp):
TTATATTAGTTTTATGAATATACAAAA
Found at i:36003497 original size:10 final size:9
Alignment explanation
Indices: 36003471--36003500 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
36003461 AAGAGTGTGA
36003471 ATAAAATTT
1 ATAAAATTT
36003480 ATAAAATTT
1 ATAAAATTT
*
36003489 ATAAAAATT
1 ATAAAATTT
36003498 ATA
1 ATA
36003501 GGAATTCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
ATAAAATTT
Found at i:36007378 original size:2 final size:2
Alignment explanation
Indices: 36007371--36007402 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
36007361 CCTTTTGCTC
36007371 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36007403 GTTAAGTATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36008708 original size:20 final size:20
Alignment explanation
Indices: 36008685--36008741 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
36008675 ATTCGGAAAA
36008685 AAATATTTAAATTAATATTT
1 AAATATTTAAATTAATATTT
36008705 AAAT-TGTTAAA-TAA-A-TT
1 AAATAT-TTAAATTAATATTT
*
36008722 AATATATTTTAATT-ATATTT
1 AA-ATATTTAAATTAATATTT
36008742 CATAATTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 12
0.70 0.02 0.28
Matches are distributed among these distances:
17 4 0.13
18 8 0.27
19 7 0.23
20 11 0.37
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (20 bp):
AAATATTTAAATTAATATTT
Found at i:36024558 original size:62 final size:63
Alignment explanation
Indices: 36024370--36024530 Score: 297
Period size: 63 Copynumber: 2.6 Consensus size: 63
36024360 ACAACATGAG
36024370 TATTTAAACTTGCAAATACTCACTTAGACATTTCATTGACAACATACAAGGCAACAACCCAAC
1 TATTTAAACTTGCAAATACTCACTTAGACATTTCATTGACAACATACAAGGCAACAACCCAAC
36024433 TATTTAAACTTGCAAATACTCACTTAGACATTTCATTGACAACATACAAGGCAACAACCCAAC
1 TATTTAAACTTGCAAATACTCACTTAGACATTTCATTGACAACATACAAGGCAACAACCCAAC
* *
36024496 TATTTAAACTTGCAAATGC-CATTTAGACATTTCAT
1 TATTTAAACTTGCAAATACTCACTTAGACATTTCAT
36024531 CGAGTATATG
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
62 15 0.16
63 81 0.84
ACGTcount: A:0.40, C:0.24, G:0.08, T:0.29
Consensus pattern (63 bp):
TATTTAAACTTGCAAATACTCACTTAGACATTTCATTGACAACATACAAGGCAACAACCCAAC
Found at i:36025598 original size:44 final size:44
Alignment explanation
Indices: 36025535--36025623 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
36025525 TGTACATGGA
*
36025535 TACTTCGATCTTGAGTCGATAAGGCAC-TAATAGTGTCGTACTGT
1 TACTTCGATCTTGAGTCGATAAGGCACTTAAT-GTGTCATACTGT
* * *
36025579 TACTTCGA-CTTTGTGTCGATGAGGCACTTCATGTGTCATACTGT
1 TACTTCGATC-TTGAGTCGATAAGGCACTTAATGTGTCATACTGT
36025623 T
1 T
36025624 TTTGTTACTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
43 1 0.03
44 35 0.90
45 3 0.08
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.37
Consensus pattern (44 bp):
TACTTCGATCTTGAGTCGATAAGGCACTTAATGTGTCATACTGT
Found at i:36027167 original size:47 final size:47
Alignment explanation
Indices: 36027058--36027168 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
36027048 CCGGGATAAG
* *
36027058 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
* * *
36027105 CACAAAGTACTTCATCGGAACAAATCCAGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTA-TAGTA
36027152 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
36027169 ACTCAATGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCAGAACTTTAACAGTATAGTA
Found at i:36034528 original size:29 final size:29
Alignment explanation
Indices: 36034495--36034553 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
36034485 ATATAATATA
* *
36034495 AAAAATAAATAAAATAAAGAAAC-AAAAAG
1 AAAAAGAAAT-AAAGAAAGAAACGAAAAAG
*
36034524 AAAAAGAAATAGAGAAAGAAACGAAAAAG
1 AAAAAGAAATAAAGAAAGAAACGAAAAAG
36034553 A
1 A
36034554 GGGAAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 10 0.38
29 16 0.62
ACGTcount: A:0.76, C:0.03, G:0.14, T:0.07
Consensus pattern (29 bp):
AAAAAGAAATAAAGAAAGAAACGAAAAAG
Found at i:36038495 original size:13 final size:15
Alignment explanation
Indices: 36038471--36038502 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
36038461 ATTTAAAAGT
36038471 AAAAAAGAAAAGAA-
1 AAAAAAGAAAAGAAG
36038485 AAAAAAG-AAAGAAG
1 AAAAAAGAAAAGAAG
36038499 AAAA
1 AAAA
36038503 TACCAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAGAAG
Found at i:36043440 original size:18 final size:18
Alignment explanation
Indices: 36043417--36043454 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
36043407 TTCTTTTAGG
36043417 AATTTGGTAAAAAGATAA
1 AATTTGGTAAAAAGATAA
36043435 AATTTGGTAAAAAGATAA
1 AATTTGGTAAAAAGATAA
36043453 AA
1 AA
36043455 ATAACTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.58, C:0.00, G:0.16, T:0.26
Consensus pattern (18 bp):
AATTTGGTAAAAAGATAA
Found at i:36043899 original size:2 final size:2
Alignment explanation
Indices: 36043892--36043919 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
36043882 AAAATAGAAA
36043892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36043920 TATGAAGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36047912 original size:2 final size:2
Alignment explanation
Indices: 36047905--36047966 Score: 117
Period size: 2 Copynumber: 31.5 Consensus size: 2
36047895 GTCTACGTAG
36047905 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36047947 AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT A
36047967 GTGTATTTTC
Statistics
Matches: 59, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 58 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36050658 original size:118 final size:118
Alignment explanation
Indices: 36050498--36050728 Score: 390
Period size: 118 Copynumber: 2.0 Consensus size: 118
36050488 TATTTCCGGT
36050498 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
* *
36050563 CCTACCCCGGTTACTCAGTCAGTCACGATTTGAGCCATACTCATAACCTCGGC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
****
36050616 TAGCGGAGTTTTACTTGTCACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
1 TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
**
36050681 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCTGTACTCATAACC
66 CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACC
36050729 ATGGAAAACA
Statistics
Matches: 105, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
118 105 1.00
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.23
Consensus pattern (118 bp):
TAGCGGAGTTTTACCCAACACGTCACACAACCTTTTGACGCGAAGTAGAATGACAACCCAAGCAC
CCTACCCCGGTTACTCAGTCAGTCACGATCTAAGCCATACTCATAACCTCGGC
Found at i:36051482 original size:42 final size:42
Alignment explanation
Indices: 36051435--36051527 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
36051425 CTAAAATAAG
*
36051435 ACTGTTTGGCTGCAGAGATATAGCATTCTGGGCTAGAATAGA
1 ACTGTTTGGCAGCAGAGATATAGCATTCTGGGCTAGAATAGA
* * * * *
36051477 ACTGTTTGGCAGCAGGGATATGGCATTTTGGGTTGGAATAGA
1 ACTGTTTGGCAGCAGAGATATAGCATTCTGGGCTAGAATAGA
36051519 ACTGTTTGG
1 ACTGTTTGG
36051528 TACCATGGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.25, C:0.12, G:0.32, T:0.31
Consensus pattern (42 bp):
ACTGTTTGGCAGCAGAGATATAGCATTCTGGGCTAGAATAGA
Found at i:36051538 original size:42 final size:42
Alignment explanation
Indices: 36051435--36051538 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 42
36051425 CTAAAATAAG
** *
36051435 ACTGTTTGGCTGCAGAGATATAGCATTCTGGGCTAGAATAGA
1 ACTGTTTGGCACCAGGGATATAGCATTCTGGGCTAGAATAGA
* * * * *
36051477 ACTGTTTGGCAGCAGGGATATGGCATTTTGGGTTGGAATAGA
1 ACTGTTTGGCACCAGGGATATAGCATTCTGGGCTAGAATAGA
* *
36051519 ACTGTTTGGTACCATGGATA
1 ACTGTTTGGCACCAGGGATA
36051539 GGGTTGTTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.26, C:0.12, G:0.31, T:0.31
Consensus pattern (42 bp):
ACTGTTTGGCACCAGGGATATAGCATTCTGGGCTAGAATAGA
Found at i:36051619 original size:10 final size:10
Alignment explanation
Indices: 36051606--36051695 Score: 60
Period size: 10 Copynumber: 8.7 Consensus size: 10
36051596 ATTAATATTT
36051606 AAATAAAATA
1 AAATAAAATA
36051616 AAATAAAATA
1 AAATAAAATA
36051626 AAATAATAA-A
1 AAATAA-AATA
*
36051636 TAAT-AAATA
1 AAATAAAATA
*
36051645 ATAA-ATAATA
1 A-AATAAAATA
*
36051655 AAAGAAAATA
1 AAATAAAATA
**
36051665 AAGGAAAATAA
1 AAATAAAAT-A
36051676 TAAATAAAAATAA
1 -AAAT-AAAAT-A
36051689 AAATAAA
1 AAATAAA
36051696 GATTGGGTTG
Statistics
Matches: 65, Mismatches: 7, Indels: 15
0.75 0.08 0.17
Matches are distributed among these distances:
8 2 0.03
9 4 0.06
10 40 0.62
11 6 0.09
12 6 0.09
13 7 0.11
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (10 bp):
AAATAAAATA
Found at i:36051638 original size:7 final size:7
Alignment explanation
Indices: 36051626--36051694 Score: 65
Period size: 7 Copynumber: 9.9 Consensus size: 7
36051616 AAATAAAATA
36051626 AAATAAT
1 AAATAAT
36051633 AAATAAT
1 AAATAAT
36051640 AAATAAT
1 AAATAAT
36051647 AAATAAT
1 AAATAAT
36051654 AAA-AGA-
1 AAATA-AT
*
36051660 AAATAAAGGA
1 AAAT-AA--T
36051670 AAATAAT
1 AAATAAT
36051677 AAATAA-
1 AAATAAT
36051683 AAATAA-
1 AAATAAT
36051689 AAATAA
1 AAATAA
36051695 AGATTGGGTT
Statistics
Matches: 55, Mismatches: 1, Indels: 13
0.80 0.01 0.19
Matches are distributed among these distances:
6 16 0.29
7 32 0.58
8 1 0.02
9 2 0.04
10 4 0.07
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.20
Consensus pattern (7 bp):
AAATAAT
Found at i:36051644 original size:34 final size:36
Alignment explanation
Indices: 36051605--36051695 Score: 98
Period size: 34 Copynumber: 2.5 Consensus size: 36
36051595 TATTAATATT
* *
36051605 TAAATAAAATAAAATAAAATAAAAT-AA-TAAATAA
1 TAAATAAAATAAAATAAAAGAAAATAAAGAAAATAA
*
36051639 TAAATAATAA-ATAATAAAAGAAAATAAAGGAAAATAA
1 TAAATAA-AATAAAATAAAAGAAAATAAA-GAAAATAA
36051676 TAAATAAAAATAAAAATAAA
1 TAAAT-AAAAT-AAAATAAA
36051696 GATTGGGTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
34 20 0.43
35 4 0.09
37 13 0.28
38 2 0.04
39 7 0.15
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (36 bp):
TAAATAAAATAAAATAAAAGAAAATAAAGAAAATAA
Found at i:36051663 original size:44 final size:42
Alignment explanation
Indices: 36051607--36051694 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 42
36051597 TTAATATTTA
* *
36051607 AATAAAATAAAATAAAATAAAATAATAAATAATAAATAATAAAT
1 AATAAAAGAAAATAAAAGAAAATAATAAATAA-AAATAA-AAAT
*
36051651 AATAAAAGAAAATAAAGGAAAATAATAAATAAAAATAAAAAT
1 AATAAAAGAAAATAAAAGAAAATAATAAATAAAAATAAAAAT
36051693 AA
1 AA
36051695 AGATTGGGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 6 0.15
43 6 0.15
44 29 0.71
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.20
Consensus pattern (42 bp):
AATAAAAGAAAATAAAAGAAAATAATAAATAAAAATAAAAAT
Found at i:36051676 original size:30 final size:29
Alignment explanation
Indices: 36051640--36051696 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
36051630 AATAAATAAT
36051640 AAATAATAAATAATAAA-AGAAAATAAAGGA
1 AAATAATAAATAA-AAATA-AAAATAAAGGA
36051670 AAATAATAAATAAAAATAAAAATAAAG
1 AAATAATAAATAAAAATAAAAATAAAG
36051697 ATTGGGTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.75, C:0.00, G:0.07, T:0.18
Consensus pattern (29 bp):
AAATAATAAATAAAAATAAAAATAAAGGA
Found at i:36056110 original size:26 final size:25
Alignment explanation
Indices: 36056076--36056124 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
36056066 AAAATAATTT
36056076 TTTTAAATTATAAACATTTTTTTCC
1 TTTTAAATTATAAACATTTTTTTCC
* * *
36056101 TTTTATAATTTTTAATATTTTTTT
1 TTTTA-AATTATAAACATTTTTTT
36056125 TAAATTAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 5 0.25
26 15 0.75
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (25 bp):
TTTTAAATTATAAACATTTTTTTCC
Found at i:36063416 original size:5 final size:5
Alignment explanation
Indices: 36063337--36063410 Score: 148
Period size: 5 Copynumber: 14.8 Consensus size: 5
36063327 AATACATTTT
36063337 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
36063387 TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATA
36063411 TCATATTTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 69 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:36063604 original size:20 final size:20
Alignment explanation
Indices: 36063579--36063623 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
36063569 AATATATATA
36063579 TATTAATTATGTTAATTAGC
1 TATTAATTATGTTAATTAGC
36063599 TATTAATTATGTTAATTAGC
1 TATTAATTATGTTAATTAGC
36063619 TATTA
1 TATTA
36063624 TTTTGAATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (20 bp):
TATTAATTATGTTAATTAGC
Found at i:36064166 original size:30 final size:30
Alignment explanation
Indices: 36064112--36064209 Score: 144
Period size: 30 Copynumber: 3.3 Consensus size: 30
36064102 CTAGCCTTTG
*
36064112 CCACCACCAACTCCAC-AACCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
36064141 CCACCATCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
36064171 CCACTACCTACTCCACTAGCCGCACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
36064201 CCACCACCA
1 CCACCACCA
36064210 CTTGTACCTA
Statistics
Matches: 60, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
29 15 0.25
30 45 0.75
ACGTcount: A:0.27, C:0.50, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:36075398 original size:75 final size:74
Alignment explanation
Indices: 36075303--36076737 Score: 888
Period size: 75 Copynumber: 18.7 Consensus size: 74
36075293 TGATGTTTTT
**
36075303 ATTTCTG-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACATTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
36075367 GTATTTTCA
66 GTATTTTCA
* * ** * *
36075376 ATTTCTGATTTTCAAAAAAATCAGCTCATATTGCAAGAAATGAGTTGAGCCTCAAGATACGTTGA
1 ATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
36075441 GGTATTTTCA
65 GGTATTTTCA
* * * * *
36075451 ATTTCTATTCAATTTATGTTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG
1 ATTTCTGTT---TTCA-------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG
36075516 ACACGCTGAGGTATTTTCA
56 ACACGCTGAGGTATTTTCA
* * * ** *
36075535 ATTTCTATTTTTC--AAAAATCAACTCATATTGTGAGAGGTGAGTTAAGCCTCGGGGCACGCTGA
1 ATTTCT-GTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
36075598 GGTATTTTCA
65 GGTATTTTCA
* * ** *
36075608 ATTTTTGTGTTTCAATCTATTTTTTAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAG
1 ATTTCTGT-TTTC-A---A------AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAA
*
36075673 GACACGCTGAGGTAATTTCA
55 GACACGCTGAGGTATTTTCA
* * * *
36075693 ATTTCTATTTGTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGGCACGTTGA
1 ATTTCTGTTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
36075756 GGTAATTTCA
65 GGTATTTTCA
** * * * * *
36075766 ATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCA-ACT-C-ATATTGCGAGAGGTGAG--T
1 ATTTCTG-TTTTCAA---A-A------AAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCT
** * * *** * *** *
36075826 TGAGCCTCAGGACACGCTAAGGTAA
52 CAAGACAC-GCTGA-GGTATTTTCA
** ** *
36075851 TTTCAATTTCTGTTGTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACAT
1 -----ATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
36075916 GCTGAGGTATTTTCA
60 GCTGAGGTATTTTCA
* * * * * *
36075931 ATTTTTGTCTTTCAAAAAAATCAACTAATACTGCGAGAGGTGAGTTGAGTCTCAAGGCACGTTGA
1 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
36075996 GGTAATTTCA
65 GGTATTTTCA
** * * * * *
36076006 ATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCA-ACT-C-ATATTGCGAGAGGTGAG--T
1 ATTTCTG-TTTTCAA---A-A------AAATCAACTCATATTGCGAGA--G-GTGAGTTGAGCCT
** * * *** * **
36076066 TGAGCCTCAGGACACGCTGA-GGT-A
52 CAAGACAC-GCTGA-GGT-ATTTTCA
* **
36076090 ATTTCAATTTCTGTTGTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACA
1 A------TTTCTGTTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
*
36076155 TGCTGAGGTATTTTCA
59 CGCTGAGGTATTTTCA
* * * *
36076171 ATTTTTGTCTTTCAAAAAAATCAACTAATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
* *
36076236 GGTAATTTGA
65 GGTATTTTCA
* * ** *
36076246 ATTTTTGTTGTT-AAAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
36076310 GGTAATTTCA
65 GGTATTTTCA
* * ** *
36076320 ATTTCTGTTTTC--AAAATTCAGCTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
36076383 GTATTTTCA
66 GTATTTTCA
* **
36076392 ATTTTTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCT
1 ATTTCTG-TTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCT
*
36076457 GAGGTAATTTCA
63 GAGGTATTTTCA
*** *
36076469 ATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGTTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
36076532 GTAATTTCA
66 GTATTTTCA
* * * ** * *
36076541 ATTTCTGTTTTC--AAAATTTAACTCATATTACGAGAAATGAGTTGAGGCTCAAGACACGTTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
36076604 GTATTTTCA
66 GTATTTTCA
* * *
36076613 ATTTCTGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCT
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---ACACGCT
*
36076676 CAGGTATTTTCA
63 GAGGTATTTTCA
*
36076688 ATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 ATTTCTGT-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
36076738 TTCAGATCAC
Statistics
Matches: 1069, Mismatches: 191, Indels: 200
0.73 0.13 0.14
Matches are distributed among these distances:
72 194 0.18
73 172 0.16
74 71 0.07
75 232 0.22
76 14 0.01
77 96 0.09
78 2 0.00
79 3 0.00
80 38 0.04
81 10 0.01
82 16 0.01
83 16 0.01
84 74 0.07
85 102 0.10
86 3 0.00
87 2 0.00
89 6 0.01
90 18 0.02
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.33
Consensus pattern (74 bp):
ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
GTATTTTCA
Found at i:36075815 original size:90 final size:87
Alignment explanation
Indices: 36075688--36075934 Score: 268
Period size: 90 Copynumber: 2.9 Consensus size: 87
36075678 GCTGAGGTAA
*
36075688 TTTCAATTTCTATTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGG-CACG
1 TTTCAATTTATATTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-AGGACACG
* *
36075752 TTGAGGTAATTTCAATTTCTGCT
65 CTAAGGTAATTTCAATTTCTGCT
* *
36075775 TTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTCAATTTATATTTGTC--AAAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
36075840 CGCTAAGGTAATTTCAATTTCTG-T
63 CGCTAAGGTAATTTCAATTTCTGCT
* * * *
36075864 TGT-AA---A-A------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGC
1 TTTCAATTTATATTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGC
* *
36075918 TGAGGTATTTTCAATTT
66 TAAGGTAATTTCAATTT
36075935 TTGTCTTTCA
Statistics
Matches: 144, Mismatches: 12, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
75 53 0.37
76 5 0.03
84 1 0.01
85 1 0.01
87 16 0.11
88 2 0.01
89 11 0.08
90 55 0.38
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (87 bp):
TTTCAATTTATATTTGTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGC
TAAGGTAATTTCAATTTCTGCT
Found at i:36076015 original size:240 final size:229
Alignment explanation
Indices: 36075633--36076742 Score: 1307
Period size: 240 Copynumber: 4.9 Consensus size: 229
36075623 TCTATTTTTT
* * * * *
36075633 AAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
* * * *
36075698 TATTTGTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGG-CACGTTGAGGTA
66 TGTTT-TCAAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTA
36075760 ATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAG
129 ATTTCAATTTCTG------AATTTATATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAG
*
36075825 TTGAGCCTCAGGACACGCTAAGGTAATTTCAATTTCTGTTGTAAAA
187 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-T--AA
36075871 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
* * *
36075936 TGTCTTTCAAAAAAATCAACTAATACTGCGAGAGGTGAGTTGAGTCTCAAGG-CACGTTGAGGTA
66 TGT-TTTCAAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTC-AGGACACGCTGAGGTA
36076000 ATTTCAATTTCTGCTTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAG
129 ATTTCAATTTCTG------AATTTATATTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAG
36076065 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGTCAAA
187 TTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT-T--AA
36076111 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
*
36076176 TGTCTTTCAAAAAAATCAACTAATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG---
66 TGT-TTTCAAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
* * * * **
36076238 --T-AA-TT-TGAATTTTTGTTGTT-AAAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCT
130 TTTCAATTTCTGAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
**
36076297 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTTC
195 CAGGACACGCTGAGGTAATTTCAATTTCTGTTTAA
* *
36076332 AAAATTCAGCTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
* *
36076397 TGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT
66 TG-TTTTC--AAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
36076462 AATTTCAATTTCTG---------TTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
128 AATTTCAATTTCTGAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
** * **
36076516 CTTGGGACACGTTGAGGTAATTTCAATTTCTGTTTTC
193 CTCAGGACACGCTGAGGTAATTTCAATTTCTGTTTAA
* * * * * * *
36076553 AAAATTTAACTCATATTACGAGAAATGAGTTGAGGCTCAAGACACGTTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
* * *
36076618 TGTTTTC-AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTCAGGT
66 TGTTTTCAAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGT
* *
36076681 -A--T---TTTC--AATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
128 AATTTCAATTTCTGAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
36076738 TTCAG
193 CTCAG
36076743 ATCACACACT
Statistics
Matches: 794, Mismatches: 48, Indels: 76
0.86 0.05 0.08
Matches are distributed among these distances:
213 4 0.01
216 3 0.00
217 38 0.05
218 1 0.00
219 10 0.01
220 9 0.01
221 195 0.25
222 41 0.05
223 52 0.07
224 61 0.08
225 7 0.01
226 10 0.01
228 1 0.00
229 2 0.00
230 2 0.00
231 2 0.00
232 2 0.00
233 2 0.00
234 2 0.00
235 1 0.00
238 64 0.08
239 5 0.01
240 280 0.35
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (229 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTT
TGTTTTCAAAAAAATCAACTAATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
TTCAATTTCTGAATTTATATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGACACGCTGAGGTAATTTCAATTTCTGTTTAA
Found at i:36076033 original size:89 final size:90
Alignment explanation
Indices: 36075925--36076102 Score: 270
Period size: 90 Copynumber: 2.0 Consensus size: 90
36075915 TGCTGAGGTA
* * *
36075925 TTTTCAATTTTTGTCTTTCAAAAAAA-TCAACTAATACTGCGAGAGGTGAGTTGAGTCTCAAGG-
1 TTTTCAATTTATATCTTTCAAAAAAATTCAACTAATACTGCGAGAGGTGAGTTGAGCCTC-AGGA
*
36075988 CACGTTGAGGTAATTTCAATTTCTGC
65 CACGCTGAGGTAATTTCAATTTCTGC
* * *
36076014 TTTTCAATTTATATTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTATATCTTTCAAAAAAATTCAACTAATACTGCGAGAGGTGAGTTGAGCCTCAGGAC
36076079 ACGCTGAGGTAATTTCAATTTCTG
66 ACGCTGAGGTAATTTCAATTTCTG
36076103 TTGTCAAAAA
Statistics
Matches: 80, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
89 26 0.32
90 54 0.68
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (90 bp):
TTTTCAATTTATATCTTTCAAAAAAATTCAACTAATACTGCGAGAGGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTAATTTCAATTTCTGC
Found at i:36076391 original size:72 final size:73
Alignment explanation
Indices: 36076028--36076742 Score: 880
Period size: 72 Copynumber: 9.6 Consensus size: 73
36076018 CAATTTATAT
36076028 TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
36076093 TCAATTTCTG
64 TCAATTTCTG
* ** * * *
36076103 TTGTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTT
1 TTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
*
36076168 TCAATTTTTG
64 TCAATTTCTG
* *
36076178 TCTTTCAAAAAAATCAACTAATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 T-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* *
36076243 TGAATTTTTG
64 TCAATTTCTG
* * **
36076253 TTGTTAAAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TT-TTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
36076318 CAATTTCTG
65 CAATTTCTG
* * ** * * *
36076327 TTTTC-AAAATTCAGCTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
*
36076391 AATTTTTG
66 AATTTCTG
*
36076399 TTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAA
1 -TTTTC---AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAA
36076464 TTTCAATTTCTG
62 TTTCAATTTCTG
** *
36076476 TTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGTTGAGGTAATTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
36076540 AATTTCTG
66 AATTTCTG
* * * ** * * * *
36076548 TTTTC-AAAATTTAACTCATATTACGAGAAATGAGTTGAGGCTCAAGACACGTTGAGGTATTTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
36076612 AATTTCTG
66 AATTTCTG
* * * *
36076620 TTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTCAGGTATT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAAT
*
36076684 TTCAATTTCTA
63 TTCAATTTCTG
*
36076695 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 T-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
36076743 ATCACACACT
Statistics
Matches: 559, Mismatches: 66, Indels: 27
0.86 0.10 0.04
Matches are distributed among these distances:
72 193 0.35
73 38 0.07
74 65 0.12
75 148 0.26
76 19 0.03
77 95 0.17
78 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (73 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTCTG
Found at i:36076411 original size:149 final size:148
Alignment explanation
Indices: 36076028--36076742 Score: 915
Period size: 149 Copynumber: 4.8 Consensus size: 148
36076018 CAATTTATAT
36076028 TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 TTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* * *
36076093 TCAATTTCTG-TTGTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATG
64 TCAATTTCTGTTTTTC-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACG
* *
36076157 CTGAGGTATTTTCAATTTTTG
128 CTGAGGTAATTTCAATTTCTG
* *
36076178 TCTTTCAAAAAAATCAACTAATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
1 T-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATT
* * * *
36076243 TGAATTTTTGTTGTT-AAAAAAATCAACTTATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
64 TCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
36076307 TGAGGTAATTTCAATTTCTG
129 TGAGGTAATTTCAATTTCTG
* * ** * * *
36076327 TTTTC-AAAATTCAGCTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* ** *
36076391 AATTTTTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
66 AATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGC
36076456 TGAGGTAATTTCAATTTCTG
129 TGAGGTAATTTCAATTTCTG
** *
36076476 TTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGTTGAGGTAATTTC
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
* * * * * *
36076540 AATTTCTG-TTTTC--AAAATTTAACTCATATTACGAGAAATGAGTTGAGGCTCAAGACACGTTG
66 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
*
36076602 AGGTATTTTCAATTTCTG
131 AGGTAATTTCAATTTCTG
* * * *
36076620 TTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTCAGGTATT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAAT
* * ** *
36076684 TTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
63 TTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
36076743 ATCACACACT
Statistics
Matches: 490, Mismatches: 63, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
144 64 0.13
145 36 0.07
146 61 0.12
147 21 0.04
148 13 0.03
149 191 0.39
150 91 0.19
151 13 0.03
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (148 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTC
AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTG
AGGTAATTTCAATTTCTG
Found at i:36078792 original size:14 final size:13
Alignment explanation
Indices: 36078754--36078792 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
36078744 ATGTTGTTAA
36078754 TTTATTACTTTAT
1 TTTATTACTTTAT
*
36078767 TTTAATATCTTTAT
1 TTTATTA-CTTTAT
36078781 TTTATTTACTTT
1 TTTA-TTACTTT
36078793 TTATATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 6 0.27
14 14 0.64
15 2 0.09
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTATTACTTTAT
Found at i:36078893 original size:23 final size:22
Alignment explanation
Indices: 36078856--36078898 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
36078846 TTTATTTTTC
36078856 TTTTATATATATATGTATATGT
1 TTTTATATATATATGTATATGT
*
36078878 TTTTAATATATTTATGTATAT
1 TTTT-ATATATATATGTATAT
36078899 ACTTATGTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (22 bp):
TTTTATATATATATGTATATGT
Found at i:36078991 original size:30 final size:30
Alignment explanation
Indices: 36078936--36079010 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
36078926 TTTATCCCTA
*
36078936 ATAT-TTATGTATTATGTAAATA-TTTTAAT
1 ATATATTATGTA-TATCTAAATATTTTTAAT
* **
36078965 ATTATATTATGTATATCTATATATTTTTCGT
1 A-TATATTATGTATATCTAAATATTTTTAAT
36078996 ATATATTATGTATAT
1 ATATATTATGTATAT
36079011 ATGTTTTCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
29 1 0.03
30 25 0.64
31 13 0.33
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (30 bp):
ATATATTATGTATATCTAAATATTTTTAAT
Found at i:36079023 original size:24 final size:25
Alignment explanation
Indices: 36078982--36079037 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
36078972 TATGTATATC
*
36078982 TATATATTTTTCGTATATAT-TATG-
1 TATATATTTTTCGAATAT-TGTATGT
36079006 TATATATGTTTTC-AATATTGTATGT
1 TATATAT-TTTTCGAATATTGTATGT
36079031 TATATAT
1 TATATAT
36079038 ATTATTGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 1 0.04
24 15 0.54
25 12 0.43
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (25 bp):
TATATATTTTTCGAATATTGTATGT
Found at i:36079107 original size:23 final size:22
Alignment explanation
Indices: 36079036--36079117 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
36079026 TATGTTATAT
*
36079036 ATATTATTGTGTATATATTTTA
1 ATATTATTGTATATATATTTTA
* * *
36079058 ACATTATTAGT-TATACATCTTTT
1 ATATTATT-GTATATATAT-TTTA
*
36079081 ATATTATTTTATATATATTTCTA
1 ATATTATTGTATATATATTT-TA
*
36079104 ATATCATTGTATAT
1 ATATTATTGTATAT
36079118 TTCTAACATC
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
22 16 0.34
23 31 0.66
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.56
Consensus pattern (22 bp):
ATATTATTGTATATATATTTTA
Found at i:36079118 original size:19 final size:19
Alignment explanation
Indices: 36079094--36079130 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
36079084 TTATTTTATA
*
36079094 TATATTTCTAATATCATTG
1 TATATTTCTAACATCATTG
36079113 TATATTTCTAACATCATT
1 TATATTTCTAACATCATT
36079131 ATTATTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.14, G:0.03, T:0.51
Consensus pattern (19 bp):
TATATTTCTAACATCATTG
Found at i:36079247 original size:20 final size:18
Alignment explanation
Indices: 36079211--36079250 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
36079201 ATTTCTAATA
*
36079211 TATATATTATATGTATTT
1 TATATATTATATATATTT
36079229 TATATATTATGTATATATTT
1 TATATATTA--TATATATTT
36079249 TA
1 TA
36079251 ATGTTATTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (18 bp):
TATATATTATATATATTT
Found at i:36079527 original size:37 final size:35
Alignment explanation
Indices: 36079462--36079531 Score: 81
Period size: 37 Copynumber: 1.9 Consensus size: 35
36079452 TTATATATAG
36079462 TATTATTTTCATACATTATCATATTTATTATTATACC
1 TATTATTTTCATA-ATTATCATATTTATT-TTATACC
36079499 TATTATTTTCACT-ATTATCACT-TATTATTTTAT
1 TATTATTTTCA-TAATTATCA-TAT-TTATTTTAT
36079532 TTTAATATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
36 12 0.40
37 17 0.57
38 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (35 bp):
TATTATTTTCATAATTATCATATTTATTTTATACC
Found at i:36098829 original size:28 final size:28
Alignment explanation
Indices: 36098768--36098839 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
36098758 TCGATATTTT
* * *
36098768 GCACAGTAAGTGTCATTTTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
36098796 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
36098824 GTACACTGAGTGCCAT
1 GCACACTAAGTGCCAT
36098840 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:36101935 original size:18 final size:18
Alignment explanation
Indices: 36101912--36101962 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
36101902 TTTAGATTTA
36101912 TGGGCCCACATG-CTCGTG
1 TGGGCCCACATGCCT-GTG
*
36101930 TGGGCCCACATACCTGTG
1 TGGGCCCACATGCCTGTG
36101948 TGGGCCCACATGCCT
1 TGGGCCCACATGCCT
36101963 AGATTGGCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 28 0.93
19 2 0.07
ACGTcount: A:0.14, C:0.35, G:0.29, T:0.22
Consensus pattern (18 bp):
TGGGCCCACATGCCTGTG
Found at i:36106886 original size:14 final size:14
Alignment explanation
Indices: 36106867--36106897 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36106857 TGCTACCATT
36106867 TTACTATTATGTTG
1 TTACTATTATGTTG
*
36106881 TTACTATTTTGTTG
1 TTACTATTATGTTG
36106895 TTA
1 TTA
36106898 TTGTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (14 bp):
TTACTATTATGTTG
Found at i:36106962 original size:30 final size:31
Alignment explanation
Indices: 36106928--36106991 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
36106918 ATTTATTTTA
*
36106928 TTGTTAATT-TTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTATTATTATTATTTTAGAA-GCAT
36106958 TTGTTAATTATTATTATTATTTTAGAAGCAT
1 TTGTTAATTATTATTATTATTTTAGAAGCAT
36106989 TTG
1 TTG
36106992 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
30 9 0.29
31 20 0.65
32 2 0.06
ACGTcount: A:0.28, C:0.05, G:0.11, T:0.56
Consensus pattern (31 bp):
TTGTTAATTATTATTATTATTTTAGAAGCAT
Found at i:36107402 original size:12 final size:13
Alignment explanation
Indices: 36107374--36107415 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
36107364 ATATCATGTA
36107374 ATATTAT-ATCTT
1 ATATTATAATCTT
*
36107386 TTATTATAATC-T
1 ATATTATAATCTT
36107398 ATATTATAATACTT
1 ATATTATAAT-CTT
36107412 ATAT
1 ATAT
36107416 ATGAATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 16 0.64
13 4 0.16
14 5 0.20
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (13 bp):
ATATTATAATCTT
Found at i:36110627 original size:11 final size:11
Alignment explanation
Indices: 36110611--36110640 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
36110601 TGGTTAAGCA
36110611 TCTGTCTGTAT
1 TCTGTCTGTAT
36110622 TCTGTCTGTAT
1 TCTGTCTGTAT
*
36110633 TCTATCTG
1 TCTGTCTG
36110641 GTCCCGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.20, G:0.17, T:0.53
Consensus pattern (11 bp):
TCTGTCTGTAT
Found at i:36110813 original size:18 final size:18
Alignment explanation
Indices: 36110766--36110820 Score: 58
Period size: 18 Copynumber: 3.0 Consensus size: 18
36110756 TCTCACTAAG
36110766 TTTTATTTTTCCTTTTCTT-
1 TTTTATTTTT-CTTTT-TTC
* *
36110785 TTCTATCTTTCTTTTTTC
1 TTTTATTTTTCTTTTTTC
*
36110803 TTTTATTTTTCCTTTTTC
1 TTTTATTTTTCTTTTTTC
36110821 GAGATTCAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 2 0.07
18 20 0.67
19 8 0.27
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTATTTTTCTTTTTTC
Found at i:36110817 original size:19 final size:18
Alignment explanation
Indices: 36110766--36110819 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
36110756 TCTCACTAAG
36110766 TTTTATTTTTCCTTTTCTT
1 TTTTATTTTTCCTTTT-TT
* *
36110785 TTCTATCTTT-CTTTTTT
1 TTTTATTTTTCCTTTTTT
36110802 CTTTTATTTTTCCTTTTT
1 -TTTTATTTTTCCTTTTT
36110820 CGAGATTCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.07
18 13 0.45
19 14 0.48
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTATTTTTCCTTTTTT
Found at i:36115085 original size:40 final size:39
Alignment explanation
Indices: 36114993--36115087 Score: 97
Period size: 40 Copynumber: 2.4 Consensus size: 39
36114983 CTGCACTCCG
36114993 TCCAA-CCTAACACACC-ATGTAGGGATAAAATCGACCCA
1 TCCAACCCT-ACACACCAATGTAGGGATAAAATCGACCCA
* * * * *
36115031 CCCATCCCTGCACACCAAT-TATGGGAATACAATCGATCCA
1 TCCAACCCTACACACCAATGTA-GGG-ATAAAATCGACCCA
36115071 TCCAACCCTACACACCA
1 TCCAACCCTACACACCA
36115088 TAAAGTACCA
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
38 11 0.24
39 8 0.18
40 26 0.58
ACGTcount: A:0.36, C:0.37, G:0.11, T:0.17
Consensus pattern (39 bp):
TCCAACCCTACACACCAATGTAGGGATAAAATCGACCCA
Found at i:36115373 original size:16 final size:17
Alignment explanation
Indices: 36115334--36115374 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
36115324 TTATCTTAAC
36115334 AGTTAAACAGTTTTTGT
1 AGTTAAACAGTTTTTGT
36115351 AGTTAAACAGTTTTTGT
1 AGTTAAACAGTTTTTGT
36115368 AG-TAAAC
1 AGTTAAAC
36115375 TATCCATCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.21
17 19 0.79
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (17 bp):
AGTTAAACAGTTTTTGT
Found at i:36116528 original size:47 final size:47
Alignment explanation
Indices: 36116419--36116529 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
36116409 CCGGGATAAG
* *
36116419 CACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
36116466 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
36116513 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
36116530 ACTCAATGTC
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 1 0.02
47 52 0.95
48 2 0.04
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:36117301 original size:4 final size:4
Alignment explanation
Indices: 36117292--36117320 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
36117282 CCCTTTTCTA
36117292 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
36117321 CACGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:36123684 original size:47 final size:47
Alignment explanation
Indices: 36123575--36123685 Score: 136
Period size: 47 Copynumber: 2.4 Consensus size: 47
36123565 CCGGGATAAG
* * *
36123575 CACATAGTGCTTCATTGGAATAAATCCGGAACTTTAACATTATAGTA
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
* * *
36123622 CACAAAGTACTTCATCGGAACAAATCCGGAACTTTAACAGTAGTCG-A
1 CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTA-TAGTA
36123669 CACATAGTG-TCTCATCG
1 CACATAGTGCT-TCATCG
36123686 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (47 bp):
CACATAGTGCTTCATCGGAACAAATCCGGAACTTTAACAGTATAGTA
Found at i:36124458 original size:4 final size:4
Alignment explanation
Indices: 36124449--36124477 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
36124439 CCCTTTTCTA
36124449 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC T
36124478 CATGTTTGCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTC
Found at i:36134282 original size:25 final size:26
Alignment explanation
Indices: 36134252--36134301 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
36134242 ATTATAGTGT
36134252 ATTATAA-TTATTATTAATT-TATTAA
1 ATTATAATTTA-TATTAATTATATTAA
36134277 ATTATAATTTATATTAATTATATTA
1 ATTATAATTTATATTAATTATATTA
36134302 TGAGATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (26 bp):
ATTATAATTTATATTAATTATATTAA
Found at i:36134502 original size:31 final size:31
Alignment explanation
Indices: 36134439--36134502 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
36134429 TGGAAAATAT
* * *
36134439 ATATTTATTAATTATTATTATTAAGTTAAAG
1 ATATTTATTAATTATAATAATTAAATTAAAG
36134470 ATATTTATTAATTA-AATAATTAAATTATAAG
1 ATATTTATTAATTATAATAATTAAATTA-AAG
36134501 AT
1 AT
36134503 TTTTGTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 10 0.34
31 19 0.66
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (31 bp):
ATATTTATTAATTATAATAATTAAATTAAAG
Found at i:36135625 original size:23 final size:21
Alignment explanation
Indices: 36135598--36135648 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
36135588 CAGGCACTTT
*
36135598 ATGTGTCATATTTCAGGCACCTC
1 ATGTGTCATA--TCAAGCACCTC
* *
36135621 GTGTGTCGTATCAAGCACCTC
1 ATGTGTCATATCAAGCACCTC
36135642 ATGTGTC
1 ATGTGTC
36135649 CTTTCAGGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 16 0.67
23 8 0.33
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.33
Consensus pattern (21 bp):
ATGTGTCATATCAAGCACCTC
Found at i:36135659 original size:21 final size:21
Alignment explanation
Indices: 36135608--36135659 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
36135598 ATGTGTCATA
* *
36135608 TTTCAGGCACCTCGTGTGTCG
1 TTTCAGGCACCTCATGTGTCC
* *
36135629 TATCAAGCACCTCATGTGTCC
1 TTTCAGGCACCTCATGTGTCC
36135650 TTTCAGGCAC
1 TTTCAGGCAC
36135660 TTATGTGCCG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.31
Consensus pattern (21 bp):
TTTCAGGCACCTCATGTGTCC
Found at i:36136502 original size:22 final size:23
Alignment explanation
Indices: 36136465--36136508 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
36136455 TATAAATGCA
36136465 TTGGTTGAAATATTGAAATTTGT
1 TTGGTTGAAATATTGAAATTTGT
*
36136488 TTGGTTGTAAT-TTGAAATTTG
1 TTGGTTGAAATATTGAAATTTG
36136509 CAGGGAAGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (23 bp):
TTGGTTGAAATATTGAAATTTGT
Found at i:36148598 original size:3 final size:3
Alignment explanation
Indices: 36148562--36148590 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
36148552 TATTATAGTG
36148562 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
36148591 AATTATTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:36148924 original size:24 final size:23
Alignment explanation
Indices: 36148872--36148924 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
36148862 AACAAATTAA
* *
36148872 ATAATGACAATTGTAATAAAATT
1 ATAATGACAAATGTAAAAAAATT
36148895 ATTAAT-ACAAATGTAAAATAAATAT
1 A-TAATGACAAATGTAAAA-AAAT-T
36148920 ATAAT
1 ATAAT
36148925 TACTTATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 11 0.44
24 12 0.48
25 2 0.08
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.34
Consensus pattern (23 bp):
ATAATGACAAATGTAAAAAAATT
Found at i:36149512 original size:21 final size:21
Alignment explanation
Indices: 36149471--36149513 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
36149461 CGTATTTCGA
**
36149471 GCACCTCGTGTGTTGTATCAG
1 GCACCTCGTGTGTCATATCAG
*
36149492 GCACCTCGTGTGTCATTTCAG
1 GCACCTCGTGTGTCATATCAG
36149513 G
1 G
36149514 AACTTATGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.26, G:0.28, T:0.33
Consensus pattern (21 bp):
GCACCTCGTGTGTCATATCAG
Found at i:36150983 original size:40 final size:38
Alignment explanation
Indices: 36150889--36150984 Score: 88
Period size: 40 Copynumber: 2.5 Consensus size: 38
36150879 TCAAATACAT
36150889 TTAAAAATATAA-AAACAAATATTAAAACAAAAAATAAA
1 TTAAAAATATAATAAA-AAATATTAAAACAAAAAATAAA
* * * * * *
36150927 -TAAAAATGAGACTAAAATAATTCTTAAAATAATACATAAA
1 TTAAAAAT-ATAATAAAA-AA-TATTAAAACAAAAAATAAA
36150967 TTAAAAATATAATAAAAA
1 TTAAAAATATAATAAAAA
36150985 GTAATTATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
37 7 0.16
38 3 0.07
39 6 0.13
40 22 0.49
41 7 0.16
ACGTcount: A:0.68, C:0.05, G:0.02, T:0.25
Consensus pattern (38 bp):
TTAAAAATATAATAAAAAATATTAAAACAAAAAATAAA
Found at i:36153440 original size:30 final size:29
Alignment explanation
Indices: 36153346--36153447 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
36153336 TATAGTGAAT
* * *
36153346 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
36153375 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
36153403 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
36153433 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36153448 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:36161290 original size:30 final size:29
Alignment explanation
Indices: 36161196--36161297 Score: 109
Period size: 28 Copynumber: 3.5 Consensus size: 29
36161186 TATAGTGAAT
* * *
36161196 CCGCACACTTAGTGCTATATATTTTCAGC
1 CCGCACACTTAGTGCTATAAATTTTAAAC
* *
36161225 TCGCACACTTAGTGCTATAGAA--TCAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
* *
36161253 TCGCACACTTAGTGCTGTACAATTTTAAAC
1 CCGCACACTTAGTGCTATA-AATTTTAAAC
36161283 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
36161298 CAATCTTGTC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 23 0.38
29 18 0.30
30 20 0.33
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.29
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATAAATTTTAAAC
Found at i:36164190 original size:21 final size:20
Alignment explanation
Indices: 36164162--36164201 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
36164152 CAAAACTTGT
36164162 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
36164182 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
36164202 AAACTACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:36168135 original size:41 final size:41
Alignment explanation
Indices: 36167990--36168137 Score: 122
Period size: 41 Copynumber: 3.6 Consensus size: 41
36167980 AACTTACCTG
* * * * *
36167990 ATACAATACACTGGCACAAAGCCTACTAGGCTC-AAGGCTA
1 ATACAACACACCGACACAAAGCCTGCTAGGCTCAAAGCCTA
* * *
36168030 GATACAACAC-GCTAGCACAAAGCCTGCTAGG-TACAAAGCCTG
1 -ATACAACACACCGA-CACAAAGCCTGCTAGGCT-CAAAGCCTA
* * * * *
36168072 ATATAATACATCGATACCAAGCCTGCTAGGCTCAAAGCCTA
1 ATACAACACACCGACACAAAGCCTGCTAGGCTCAAAGCCTA
*
36168113 ATACAACACACCGACACGAAGCCTG
1 ATACAACACACCGACACAAAGCCTG
36168138 ATATAATACA
Statistics
Matches: 82, Mismatches: 20, Indels: 10
0.73 0.18 0.09
Matches are distributed among these distances:
40 1 0.01
41 73 0.89
42 8 0.10
ACGTcount: A:0.37, C:0.29, G:0.18, T:0.16
Consensus pattern (41 bp):
ATACAACACACCGACACAAAGCCTGCTAGGCTCAAAGCCTA
Found at i:36168147 original size:66 final size:66
Alignment explanation
Indices: 36168065--36168200 Score: 191
Period size: 66 Copynumber: 2.1 Consensus size: 66
36168055 GCTAGGTACA
* * * * * *
36168065 AAGCCTGATATAATACATCGATACCAAGCCTGCTAGGCTCAAAGCCTAATACAACACACCGACAC
1 AAGCCTGATATAATACACCGACACAAAGCCTGCGAGGCTAAAAGCCTAATAAAACACACCGACAC
36168130 G
66 G
* * *
36168131 AAGCCTGATATAATACACCGGCACAAAGCCTGCGAGGCTAAAAGCCTGATAAAACACACCGGCAC
1 AAGCCTGATATAATACACCGACACAAAGCCTGCGAGGCTAAAAGCCTAATAAAACACACCGACAC
36168196 G
66 G
36168197 AAGC
1 AAGC
36168201 TTGCTAGGCA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.14
Consensus pattern (66 bp):
AAGCCTGATATAATACACCGACACAAAGCCTGCGAGGCTAAAAGCCTAATAAAACACACCGACAC
G
Found at i:36168162 original size:25 final size:25
Alignment explanation
Indices: 36168104--36168162 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
36168094 CTGCTAGGCT
*
36168104 CAAAGCCTAATACAACACACCGACA
1 CAAAGCCTGATACAACACACCGACA
* * * *
36168129 CGAAGCCTGATATAATACACCGGCA
1 CAAAGCCTGATACAACACACCGACA
36168154 CAAAGCCTG
1 CAAAGCCTG
36168163 CGAGGCTAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.41, C:0.32, G:0.15, T:0.12
Consensus pattern (25 bp):
CAAAGCCTGATACAACACACCGACA
Found at i:36168240 original size:82 final size:82
Alignment explanation
Indices: 36168131--36168287 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 82
36168121 CACCGACACG
*
36168131 AAGCCTGATATAATACACCGGCACAAAGCCTGCGAGGCTAAAAGCCTGATAAAACACACCGGCAC
1 AAGCCTAATATAATACACCGGCACAAAGCCTGCGAGGCTAAAAGCCTGATAAAACACACCGGCAC
36168196 GAAGCTTGCTAGGCACA
66 GAAGCTTGCTAGGCACA
* * * * * * *
36168213 AAGCCTAATATAATACACTGGCTCAAAGCCTGCTAGGCTCAAAGCCTGATATAATACACTGGCAC
1 AAGCCTAATATAATACACCGGCACAAAGCCTGCGAGGCTAAAAGCCTGATAAAACACACCGGCAC
36168278 GAAGCTTGCT
66 GAAGCTTGCT
36168288 GGACTCAAGG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 67 1.00
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.18
Consensus pattern (82 bp):
AAGCCTAATATAATACACCGGCACAAAGCCTGCGAGGCTAAAAGCCTGATAAAACACACCGGCAC
GAAGCTTGCTAGGCACA
Found at i:36168254 original size:148 final size:148
Alignment explanation
Indices: 36167986--36168282 Score: 364
Period size: 148 Copynumber: 2.0 Consensus size: 148
36167976 GTACAACTTA
* * * * * * *
36167986 CCTGATACAATACACTGGCACAAAGCCTACTAGGCTCAAGGCTAGATACAACACGCTAGCACAAA
1 CCTGATACAATACACCGGCACAAAGCCTACGAGGCTAAAGCCTAGATAAAACACACCAGCACAAA
* * *
36168051 GCCTGCTAGGTACAAAGCCTGATATAATACATCGATACCAAGCCTGCTAGGCTCAAAGCCTAATA
66 GCCTGCTAGGCACAAAGCCTAATATAATACATCGATACAAAGCCTGCTAGGCTCAAAGCCTAATA
36168116 CAACACACCGACACGAAG
131 CAACACACCGACACGAAG
* * * *
36168134 CCTGATATAATACACCGGCACAAAGCCTGCGAGGCTAAAAGCCT-GATAAAACACACCGGCACGA
1 CCTGATACAATACACCGGCACAAAGCCTACGAGGCT-AAAGCCTAGATAAAACACACCAGCACAA
* * * *
36168198 AGCTTGCTAGGCACAAAGCCTAATATAATACACTGGCT-CAAAGCCTGCTAGGCTCAAAGCCTGA
65 AGCCTGCTAGGCACAAAGCCTAATATAATACA-TCGATACAAAGCCTGCTAGGCTCAAAGCCTAA
* * * *
36168262 TATAATACACTGGCACGAAG
129 TACAACACACCGACACGAAG
36168282 C
1 C
36168283 TTGCTGGACT
Statistics
Matches: 125, Mismatches: 22, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
148 117 0.94
149 8 0.06
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.16
Consensus pattern (148 bp):
CCTGATACAATACACCGGCACAAAGCCTACGAGGCTAAAGCCTAGATAAAACACACCAGCACAAA
GCCTGCTAGGCACAAAGCCTAATATAATACATCGATACAAAGCCTGCTAGGCTCAAAGCCTAATA
CAACACACCGACACGAAG
Found at i:36168295 original size:41 final size:41
Alignment explanation
Indices: 36168131--36168304 Score: 197
Period size: 41 Copynumber: 4.2 Consensus size: 41
36168121 CACCGACACG
* *
36168131 AAGCCTGATATAATACACCGGCACAAAGCCTGCGAGGCTAA
1 AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCTCA
* * * * *
36168172 AAGCCTGATAAAACACACCGGCACGAAGCTTGCTAGGCACA
1 AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCTCA
* * *
36168213 AAGCCTAATATAATACACTGGCTCAAAGCCTGCTAGGCTCA
1 AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCTCA
* * *
36168254 AAGCCTGATATAATACACTGGCACGAAGCTTGCT-GGACTCA
1 AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGG-CTCA
* *
36168295 AGGCCCGATA
1 AAGCCTGATA
36168305 CACTATCTCC
Statistics
Matches: 111, Mismatches: 21, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
40 2 0.02
41 109 0.98
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.17
Consensus pattern (41 bp):
AAGCCTGATATAATACACCGGCACAAAGCCTGCTAGGCTCA
Found at i:36170423 original size:250 final size:249
Alignment explanation
Indices: 36169970--36170473 Score: 713
Period size: 250 Copynumber: 2.0 Consensus size: 249
36169960 TGGTGACTAG
* * * * * *
36169970 TGATGAGTGGTGTAGAGCTCACTTCCAAAAGTTATTAGTGGCTACGAAGGGGCAAGCCAATTGGT
1 TGATGAGTGGAGTAGAGATCACTTCAAAAAGTTATCAGCGGCTACGAAGGGGCAAGCCAATTAGT
* * * *
36170035 TGCAATGAAAATCTTAAGTTGGAATGTCCACGATTTGAGGAATCTGAGAGCTATTTGAAGGTTTT
66 CGCAATGAAAATCTTAAGTTGGAAAGTCCACGATTTGAGGAATCTAAGAGCTATTTGAAGGTTTC
* * * * *
36170100 AGCACATGCTGAAGATACATAGTCCCTATGTGGTTTTCTTTATGGAAACAAAGTTGAATGGAAAT
131 AGCACATACTGAAGATACATAGTCCCTATGTGGTCTTCCTTATGGAAACAAAGTTGAATAGAAAC
* * *
36170165 AGGATGGAAAGAGTTTGAAAGAGATGTAGGTTCCAAAATGGGATCTAGTTAATGC
196 AAGATGG-AAGAGTTCGAAAGAGATGTAGGTTCCAAAATGGGATCTAGTTAATAC
* * *
36170220 TGATGAGTGGAGTTGAGATTACTTCAAAAAGTTATCAGCGGCTGCCGAA-GGGCAAGCCAATTAG
1 TGATGAGTGGAGTAGAGATCACTTCAAAAAGTTATCAGCGGCT-ACGAAGGGGCAAGCCAATTAG
* * * *
36170284 TCGCAATGAAAATCTTAAGTTGGAAAGTTCGCGGTTTGGGGAATCTAAGAGCTATTTGAAGGTTT
65 TCGCAATGAAAATCTTAAGTTGGAAAGTCCACGATTTGAGGAATCTAAGAGCTATTTGAAGGTTT
* * * *
36170349 CAGTACATACTGAAGATATATAGTTCCTATGTGGTCTTCCTTATGGAGACAAAGTTGAATAGAAA
130 CAGCACATACTGAAGATACATAGTCCCTATGTGGTCTTCCTTATGGAAACAAAGTTGAATAGAAA
*
36170414 CAAGATGGAAGAGTTCGAAAGAGATGTGGGTTCCAAAATGGGATCTAGTTAATAC
195 CAAGATGGAAGAGTTCGAAAGAGATGTAGGTTCCAAAATGGGATCTAGTTAATAC
36170469 TGATG
1 TGATG
36170474 GAACTAGAGG
Statistics
Matches: 223, Mismatches: 30, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
249 49 0.22
250 170 0.76
251 4 0.02
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (249 bp):
TGATGAGTGGAGTAGAGATCACTTCAAAAAGTTATCAGCGGCTACGAAGGGGCAAGCCAATTAGT
CGCAATGAAAATCTTAAGTTGGAAAGTCCACGATTTGAGGAATCTAAGAGCTATTTGAAGGTTTC
AGCACATACTGAAGATACATAGTCCCTATGTGGTCTTCCTTATGGAAACAAAGTTGAATAGAAAC
AAGATGGAAGAGTTCGAAAGAGATGTAGGTTCCAAAATGGGATCTAGTTAATAC
Found at i:36196518 original size:16 final size:17
Alignment explanation
Indices: 36196497--36196543 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
36196487 ATTTGGTTCG
*
36196497 TTGTAATGGAATA-AAA
1 TTGTAATGAAATAGAAA
**
36196513 TTGTAATTTAATAGAAA
1 TTGTAATGAAATAGAAA
36196530 -TGTAATGAAATAGA
1 TTGTAATGAAATAGA
36196544 GTTATAATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
16 23 0.88
17 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (17 bp):
TTGTAATGAAATAGAAA
Found at i:36196733 original size:16 final size:16
Alignment explanation
Indices: 36196714--36196760 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
36196704 AAATAAGATA
*
36196714 TAATTTAATAATATTT
1 TAATTTAATTATATTT
*
36196730 TAATATAATTAT-TTT
1 TAATTTAATTATATTT
*
36196745 TATATTAAATTATATT
1 TA-ATTTAATTATATT
36196761 AAAATATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
15 5 0.20
16 18 0.72
17 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TAATTTAATTATATTT
Found at i:36196735 original size:21 final size:21
Alignment explanation
Indices: 36196660--36196739 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 21
36196650 ACTTGAATAA
36196660 TTAATCATAATTTAGTATAATTATT
1 TTAAT-ATAATTTA--ATAA-TATT
**
36196685 ATTAAATATAATTTAATAA-AAA
1 -TT-AATATAATTTAATAATATT
*
36196707 TAAGATATAATTTAATAATATT
1 TTA-ATATAATTTAATAATATT
36196729 TTAATATAATT
1 TTAATATAATT
36196740 ATTTTTATAT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
20 1 0.02
21 23 0.51
22 4 0.09
24 4 0.09
26 10 0.22
27 3 0.07
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (21 bp):
TTAATATAATTTAATAATATT
Found at i:36196765 original size:58 final size:57
Alignment explanation
Indices: 36196656--36196766 Score: 134
Period size: 58 Copynumber: 1.9 Consensus size: 57
36196646 AGGTACTTGA
* * *
36196656 ATAATTAATCATAATTTAGTATAATTATTATTAAATATAATTTAATAAAAATAAGAT
1 ATAATTAATAATAATTTAATATAATTATTATTAAATATAAATTAATAAAAATAAGAT
* * * *
36196713 ATAATTTAATAATATTTTAATATAATTATTTTTATAT-TAAATTATATTAAAATA
1 ATAA-TTAATAATAATTTAATATAATTATTATTAAATATAAATTA-ATAAAAATA
36196767 TTTTATTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
57 10 0.22
58 35 0.78
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (57 bp):
ATAATTAATAATAATTTAATATAATTATTATTAAATATAAATTAATAAAAATAAGAT
Found at i:36196777 original size:15 final size:15
Alignment explanation
Indices: 36196754--36196804 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
36196744 TTATATTAAA
36196754 TTATATTAAAATATT
1 TTATATTAAAATATT
*
36196769 TTATTTTAAATTATATT
1 TTATATTAAA--ATATT
*
36196786 TTGAAATT-AAATATT
1 TT-ATATTAAAATATT
36196801 TTAT
1 TTAT
36196805 TTGTATATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
14 1 0.03
15 16 0.55
17 9 0.31
18 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TTATATTAAAATATT
Found at i:36200643 original size:38 final size:38
Alignment explanation
Indices: 36200591--36200663 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
36200581 ACCAGAATGG
36200591 CACCCAATGCCTCATCGG-ATAGTTCGAAGCAAAGTTGA
1 CACCCAATGCCTCATCGGCATAG-TCGAAGCAAAGTTGA
* * * *
36200629 CACCCAGTGTCTCATCGGCCTAGTCGAAGTAAAGT
1 CACCCAATGCCTCATCGGCATAGTCGAAGCAAAGT
36200664 GGTACCCAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
38 27 0.90
39 3 0.10
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (38 bp):
CACCCAATGCCTCATCGGCATAGTCGAAGCAAAGTTGA
Found at i:36200721 original size:41 final size:38
Alignment explanation
Indices: 36200614--36200724 Score: 100
Period size: 38 Copynumber: 2.8 Consensus size: 38
36200604 ATCGGATAGT
* *
36200614 TCGAAGCAAAGTTGACACCCAGTGTCTCATCG-GCCTAG
1 TCGAAGTAAAG-TGACACCCAGTGTCTCATCGAACCTAG
** ** *
36200652 TCGAAGTAAAGTGGTACCCAGTACCTCATCGAATCTA-
1 TCGAAGTAAAGTGACACCCAGTGTCTCATCGAACCTAG
36200689 TCCGAAGTAAAATAGTGACACCCAGTGTCTCATCGA
1 T-CGAAGT--AA-AGTGACACCCAGTGTCTCATCGA
36200725 CTCAAGGTCA
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
37 17 0.30
38 19 0.33
40 2 0.04
41 19 0.33
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.23
Consensus pattern (38 bp):
TCGAAGTAAAGTGACACCCAGTGTCTCATCGAACCTAG
Found at i:36200948 original size:25 final size:25
Alignment explanation
Indices: 36200920--36200967 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
36200910 CAATATGCAA
* *
36200920 TTCAATTCCACAATCCAATTTCACT
1 TTCAATTCAAAAATCCAATTTCACT
* *
36200945 TTCACTTCAAAAATCCACTTTCA
1 TTCAATTCAAAAATCCAATTTCA
36200968 AAACCAAATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.35
Consensus pattern (25 bp):
TTCAATTCAAAAATCCAATTTCACT
Found at i:36210155 original size:6 final size:6
Alignment explanation
Indices: 36210146--36210186 Score: 59
Period size: 6 Copynumber: 7.2 Consensus size: 6
36210136 TTTAAATTTT
*
36210146 ATATTA ATATTA ATATTA ATATT- ATATT- ATATTC ATATTA A
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA A
36210187 ATAAAATAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
5 10 0.30
6 23 0.70
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (6 bp):
ATATTA
Found at i:36210183 original size:22 final size:23
Alignment explanation
Indices: 36210144--36210186 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
36210134 AATTTAAATT
36210144 TTATATTAATATTAATATTAATA
1 TTATATTAATATTAATATTAATA
*
36210167 TTATATT-ATATTCATATTAA
1 TTATATTAATATTAATATTAA
36210187 ATAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTATATTAATATTAATATTAATA
Found at i:36210897 original size:28 final size:25
Alignment explanation
Indices: 36210842--36210900 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
36210832 GAGGATTTTT
*
36210842 ATTT-TTTAATATTAATATAATTAT
1 ATTTATTTAATATTAATATAATTAA
36210866 ATTTATTTAATATTAATATAAATTTTAA
1 ATTTATTTAATATTAATAT-AA--TTAA
36210894 ATTTATT
1 ATTTATT
36210901 ATTATATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 14 0.47
26 2 0.07
28 10 0.33
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (25 bp):
ATTTATTTAATATTAATATAATTAA
Found at i:36210900 original size:21 final size:20
Alignment explanation
Indices: 36210876--36210914 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36210866 ATTTATTTAA
36210876 TATTAATATAAATTTTAAATT
1 TATTAATAT-AATTTTAAATT
* *
36210897 TATTATTATATTTTTAAA
1 TATTAATATAATTTTAAA
36210915 AAAATATTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TATTAATATAATTTTAAATT
Found at i:36214247 original size:18 final size:18
Alignment explanation
Indices: 36214224--36214264 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
36214214 ATTTTTTTGA
36214224 AAAATGGAGTCGACTTGG
1 AAAATGGAGTCGACTTGG
36214242 AAAATGGAGTCGACTTGG
1 AAAATGGAGTCGACTTGG
36214260 AAAAT
1 AAAAT
36214265 TAAAACGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.10, G:0.29, T:0.22
Consensus pattern (18 bp):
AAAATGGAGTCGACTTGG
Found at i:36215288 original size:3 final size:3
Alignment explanation
Indices: 36215273--36215316 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
36215263 ATGATAGTAC
* * * *
36215273 AAT AAT GAT AAT AAT AAT ATT AAT AGT AAT AAT AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
36215317 ATATTTTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36216465 original size:19 final size:19
Alignment explanation
Indices: 36216441--36216478 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
36216431 GAAATGAATA
*
36216441 ATTTCAGGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
36216460 ATTTCAAGCAAATAGGTTG
1 ATTTCAAGCAAATAGGTTG
36216479 GCAATCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (19 bp):
ATTTCAAGCAAATAGGTTG
Done.