Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 12 of 335
Found at i:4201184 original size:16 final size:16
Alignment explanation
Indices: 4201150--4201184 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
4201140 TTGAGATTAA
**
4201150 TTTAAAATTTTAATTT
1 TTTAAAATTTTAACAT
4201166 TTTAAAATTTTAACAT
1 TTTAAAATTTTAACAT
4201182 TTT
1 TTT
4201185 TGCTTCAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTTAAAATTTTAACAT
Found at i:4215645 original size:28 final size:28
Alignment explanation
Indices: 4215575--4215646 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
4215565 ATGTAAGTAA
4215575 TTAATTTTTTTAAAATTTAAAAAAATAT
1 TTAATTTTTTTAAAATTTAAAAAAATAT
* * * * *
4215603 ATAATTTTATAAAAATTGT-AAATAATTT
1 TTAATTTTTTTAAAATT-TAAAAAAATAT
4215631 TTAATTTTTTTAAAAT
1 TTAATTTTTTTAAAAT
4215647 ATATAATTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 34 0.97
29 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (28 bp):
TTAATTTTTTTAAAATTTAAAAAAATAT
Found at i:4215658 original size:17 final size:16
Alignment explanation
Indices: 4215636--4215671 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
4215626 AATTTTTAAT
*
4215636 TTTTTTAAAATATATAA
1 TTTTTTAAAAAATA-AA
4215653 TTTTTTAAAAAATAAA
1 TTTTTTAAAAAATAAA
4215669 TTT
1 TTT
4215672 AAAATGTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTTTAAAAAATAAA
Found at i:4217583 original size:47 final size:47
Alignment explanation
Indices: 4217514--4217604 Score: 182
Period size: 47 Copynumber: 1.9 Consensus size: 47
4217504 GATGAAATGT
4217514 TAGATTCAACATGAAAAAGCATTTGACAAGAAATTGACCAATTCTCA
1 TAGATTCAACATGAAAAAGCATTTGACAAGAAATTGACCAATTCTCA
4217561 TAGATTCAACATGAAAAAGCATTTGACAAGAAATTGACCAATTC
1 TAGATTCAACATGAAAAAGCATTTGACAAGAAATTGACCAATTC
4217605 CCAGTAAGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.25
Consensus pattern (47 bp):
TAGATTCAACATGAAAAAGCATTTGACAAGAAATTGACCAATTCTCA
Found at i:4222433 original size:15 final size:15
Alignment explanation
Indices: 4222413--4222442 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
4222403 CAAGTTAGTT
4222413 CCATTTCAAGCAATA
1 CCATTTCAAGCAATA
4222428 CCATTTCAAGCAATA
1 CCATTTCAAGCAATA
4222443 TAGTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (15 bp):
CCATTTCAAGCAATA
Found at i:4227302 original size:1 final size:1
Alignment explanation
Indices: 4227298--4227325 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
4227288 CCTTTTTTCC
4227298 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
4227326 GCACATGCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:4235737 original size:5 final size:5
Alignment explanation
Indices: 4235727--4235759 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
4235717 ACAATATCTC
4235727 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTT
4235760 TATTTCCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTCT
Found at i:4239233 original size:18 final size:18
Alignment explanation
Indices: 4239210--4239245 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
4239200 ATGTTAATAT
4239210 AACCTTACAAATCAACAA
1 AACCTTACAAATCAACAA
4239228 AACCTTACAAATCAACAA
1 AACCTTACAAATCAACAA
4239246 GAAAAAGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.17
Consensus pattern (18 bp):
AACCTTACAAATCAACAA
Found at i:4241858 original size:13 final size:13
Alignment explanation
Indices: 4241842--4241869 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
4241832 AAATTAATAC
4241842 AAATTATAATCTA
1 AAATTATAATCTA
4241855 AAATTATAATCTA
1 AAATTATAATCTA
4241868 AA
1 AA
4241870 TTAAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATTATAATCTA
Found at i:4247277 original size:16 final size:17
Alignment explanation
Indices: 4247249--4247280 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
4247239 ATTTATATTT
4247249 TTTAAATAAAATTAATA
1 TTTAAATAAAATTAATA
4247266 TTTAAA-AAAATTAAT
1 TTTAAATAAAATTAAT
4247281 GATATTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTAAATAAAATTAATA
Found at i:4258415 original size:31 final size:31
Alignment explanation
Indices: 4258380--4258448 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
4258370 TTGTTTTCCA
4258380 GTTTTTCAGAACATTTCTAGTGAAATCAATG
1 GTTTTTCAGAACATTTCTAGTGAAATCAATG
4258411 GTTTTTCAGAACATTTCTAGTGAAATCAATG
1 GTTTTTCAGAACATTTCTAGTGAAATCAATG
*
4258442 ATTTTTC
1 GTTTTTC
4258449 CCTCCTAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.42
Consensus pattern (31 bp):
GTTTTTCAGAACATTTCTAGTGAAATCAATG
Found at i:4266142 original size:270 final size:270
Alignment explanation
Indices: 4265661--4266204 Score: 1009
Period size: 270 Copynumber: 2.0 Consensus size: 270
4265651 TATCACCTAG
4265661 AGGCAGAGTAGATAAACTTCCTGTCTGTTCTTGTGTGATATCCTGATGTTCTCATCAGTTTGGGA
1 AGGCAGAGTAGATAAACTTCCTGTCTGTTCTTGTGTGATATCCTGATGTTCTCATCAGTTTGGGA
4265726 TTTAAAAAAAAAAAAGTTTTCAGTTCAATTTGCTTTATAAAGAAGATACCAGATTTTGTTTCCAA
66 TTTAAAAAAAAAAAAGTTTTCAGTTCAATTTGCTTTATAAAGAAGATACCAGATTTTGTTTCCAA
4265791 TTGACGAGAACAAAGTAATACATTGTTAGATGTAGGCTACATAGCTACATTTTTGCATGTGAAAT
131 TTGACGAGAACAAAGTAATACATTGTTAGATGTAGGCTACATAGCTACATTTTTGCATGTGAAAT
*
4265856 GATTAACCAAGTGCAAAGTATATCATCAAGTTGAGCTAGTGCTATATCTGGCAATATAGTTGCTT
196 GATTAACCAAGTGCAAAGTATATCATCAAGTTGAGCTAGTGCTATATCTGGCAAAATAGTTGCTT
4265921 TGAGTCAAAA
261 TGAGTCAAAA
4265931 AGGCAGAGTAGATAAACTTCCTAG-CTGTTCTTGTGTGATATCCTGATGTTCTCATCAGTTTGGG
1 AGGCAGAGTAGATAAACTTCCT-GTCTGTTCTTGTGTGATATCCTGATGTTCTCATCAGTTTGGG
* * *
4265995 ATTTTAAAAAGAAAAAGTTTTTAGTTCAATTTGCTTTATAAAGAAGATACCAGATTTTGTTTCCA
65 ATTTAAAAAAAAAAAAGTTTTCAGTTCAATTTGCTTTATAAAGAAGATACCAGATTTTGTTTCCA
* *
4266060 ATTGACGAGAACAAAGTAATACATTGTTAGATGTAGGCTATATTGCTACATTTTTGCATGTGAAA
130 ATTGACGAGAACAAAGTAATACATTGTTAGATGTAGGCTACATAGCTACATTTTTGCATGTGAAA
4266125 TGATTAACCAAGTGCAAAGTATATCATCAAGTTGAGCTAGTGCTATATCTGGCAAAATAGTTGCT
195 TGATTAACCAAGTGCAAAGTATATCATCAAGTTGAGCTAGTGCTATATCTGGCAAAATAGTTGCT
*
4266190 TTGAGTCCAAA
260 TTGAGTCAAAA
4266201 AGGC
1 AGGC
4266205 TAAAAAAAGG
Statistics
Matches: 266, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
270 265 1.00
271 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (270 bp):
AGGCAGAGTAGATAAACTTCCTGTCTGTTCTTGTGTGATATCCTGATGTTCTCATCAGTTTGGGA
TTTAAAAAAAAAAAAGTTTTCAGTTCAATTTGCTTTATAAAGAAGATACCAGATTTTGTTTCCAA
TTGACGAGAACAAAGTAATACATTGTTAGATGTAGGCTACATAGCTACATTTTTGCATGTGAAAT
GATTAACCAAGTGCAAAGTATATCATCAAGTTGAGCTAGTGCTATATCTGGCAAAATAGTTGCTT
TGAGTCAAAA
Found at i:4268522 original size:13 final size:14
Alignment explanation
Indices: 4268495--4268524 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4268485 AACAAGGTTC
4268495 TTTTGTTCAATTTT
1 TTTTGTTCAATTTT
*
4268509 TTTTGTTCCATTTT
1 TTTTGTTCAATTTT
4268523 TT
1 TT
4268525 GCATGTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.10, G:0.07, T:0.73
Consensus pattern (14 bp):
TTTTGTTCAATTTT
Found at i:4270640 original size:17 final size:19
Alignment explanation
Indices: 4270603--4270641 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
4270593 GCGCGATCTA
4270603 TTTTTTTAATAATATAATTT
1 TTTTTTTAATAATAT-ATTT
4270623 TTTTTTTAA-AATAT-TTT
1 TTTTTTTAATAATATATTT
4270640 TT
1 TT
4270642 ATTATATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
19 5 0.26
20 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTTAATAATATATTT
Found at i:4271982 original size:46 final size:44
Alignment explanation
Indices: 4271923--4272037 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
4271913 ACAGGACAGA
* *
4271923 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
4271969 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
4272013 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
4272038 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:4272018 original size:44 final size:45
Alignment explanation
Indices: 4271923--4272056 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
4271913 ACAGGACAGA
* *
4271923 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
4271969 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
4272013 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
4272057 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:4281197 original size:35 final size:35
Alignment explanation
Indices: 4281153--4281319 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
4281143 TCCTCATTGA
** *
4281153 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
4281188 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
4281228 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
4281263 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
4281298 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
4281320 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:4281236 original size:75 final size:73
Alignment explanation
Indices: 4281148--4281319 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
4281138 GGTTTTCCTC
** * * **
4281148 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
4281212 TCAGTATGG
65 TCAGTATGG
*
4281221 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
4281286 CTCAGTATGG
64 CTCAGTATGG
4281296 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
4281320 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:4288687 original size:35 final size:35
Alignment explanation
Indices: 4288643--4288809 Score: 201
Period size: 35 Copynumber: 4.6 Consensus size: 35
4288633 TCCTCATTGA
** *
4288643 AATACCATACCTACATTTTTCAACTCGGTATGGGA-
1 AATACCATACCTACATTTCACAACTCAGTAT-GGAT
* **
4288678 AATGCCATACCTACATTTCTTAACTCAGTATGGATTTGAT
1 AATACCATACCTACATTTCACAACTCAGTAT-G----GAT
*
4288718 AATACCATACCTACATTTCACAGCTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
4288753 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACATTTCACAACTCAGTATGGAT
*
4288788 GATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
4288810 CTTTGCCATG
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
35 87 0.74
39 3 0.03
40 27 0.23
ACGTcount: A:0.34, C:0.25, G:0.11, T:0.31
Consensus pattern (35 bp):
AATACCATACCTACATTTCACAACTCAGTATGGAT
Found at i:4288726 original size:75 final size:73
Alignment explanation
Indices: 4288638--4288809 Score: 226
Period size: 75 Copynumber: 2.4 Consensus size: 73
4288628 GGTTTTCCTC
** * * **
4288638 ATTGAAATACCATACCTACATTTTTCAACTCGGTATGGGA-AATGCCATACCTACATTTCTTAAC
1 ATTGAAATACCATACCTACATTTCACAACTCAGTAT-GGATAATACCATACCTACATTTCACAAC
4288702 TCAGTATGG
65 TCAGTATGG
*
4288711 ATTTGATAATACCATACCTACATTTCACAGCTCAGTATGGATAATACCATACCTACATTTCACAA
1 A-TTGA-AATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAA
4288776 CTCAGTATGG
64 CTCAGTATGG
4288786 A-TG--ATACCATACCTACATTTCACA
1 ATTGAAATACCATACCTACATTTCACA
4288810 CTTTGCCATG
Statistics
Matches: 89, Mismatches: 7, Indels: 9
0.85 0.07 0.09
Matches are distributed among these distances:
70 21 0.24
73 3 0.03
74 7 0.08
75 58 0.65
ACGTcount: A:0.34, C:0.24, G:0.11, T:0.31
Consensus pattern (73 bp):
ATTGAAATACCATACCTACATTTCACAACTCAGTATGGATAATACCATACCTACATTTCACAACT
CAGTATGG
Found at i:4290674 original size:46 final size:44
Alignment explanation
Indices: 4290600--4290714 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
4290590 ACAGGACAGA
* *
4290600 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
4290646 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
4290690 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
4290715 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:4290695 original size:44 final size:45
Alignment explanation
Indices: 4290600--4290733 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
4290590 ACAGGACAGA
* *
4290600 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
4290646 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
4290690 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
4290734 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:4292003 original size:27 final size:27
Alignment explanation
Indices: 4291972--4292024 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
4291962 AGTGTTACAC
4291972 GACCAGTCGCTCCTACTGCAGAGGCGT
1 GACCAGTCGCTCCTACTGCAGAGGCGT
*
4291999 GACCAGTCGCTCCTGCTGCAGAGGCG
1 GACCAGTCGCTCCTACTGCAGAGGCG
4292025 AGACTCCCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (27 bp):
GACCAGTCGCTCCTACTGCAGAGGCGT
Found at i:4294301 original size:3 final size:3
Alignment explanation
Indices: 4294274--4294341 Score: 91
Period size: 3 Copynumber: 22.3 Consensus size: 3
4294264 ACTAACATTT
* * * *
4294274 TTC TTC TTTC TCC TCC TTC TCC TTC TTC TTC TTC TTC TTT TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
4294320 TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC T
4294342 CTCTCTTTGC
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
3 55 0.95
4 3 0.05
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:4297512 original size:26 final size:25
Alignment explanation
Indices: 4297478--4297529 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
4297468 CTTTTTACTT
* *
4297478 AAAAAAAAGTTTAAAAATATTCATA
1 AAAAAAAAGTATAAAAACATTCATA
*
4297503 AAAAATAAAGTATAAAAACATTTATA
1 AAAAA-AAAGTATAAAAACATTCATA
4297529 A
1 A
4297530 TTTAAATCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (25 bp):
AAAAAAAAGTATAAAAACATTCATA
Found at i:4306040 original size:21 final size:21
Alignment explanation
Indices: 4306016--4306066 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
4306006 CATATTTTAG
4306016 ATATAAAATAATTA-AATATAA
1 ATAT-AAATAATTATAATATAA
* *
4306037 ATATTAATAATTATATTATAA
1 ATATAAATAATTATAATATAA
*
4306058 ATATTAATA
1 ATATAAATA
4306067 TTAATATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
ATATAAATAATTATAATATAA
Found at i:4306073 original size:21 final size:21
Alignment explanation
Indices: 4306022--4306076 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
4306012 TTAGATATAA
*
4306022 AATAATTA-AATATAAATATT
1 AATAATTATATTATAAATATT
4306042 AATAATTATATTATAAATATT
1 AATAATTATATTATAAATATT
4306063 AAT-ATTAATATTAT
1 AATAATT-ATATTAT
4306077 TAATTAACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 11 0.34
21 21 0.66
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AATAATTATATTATAAATATT
Found at i:4306092 original size:27 final size:27
Alignment explanation
Indices: 4306023--4306093 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
4306013 TAGATATAAA
4306023 ATAATTAAATATA-AATATTAATAATT
1 ATAATTAAATATATAATATTAATAATT
*
4306049 ATATTATAAATAT-TAATATTAAT-ATT
1 ATAAT-TAAATATATAATATTAATAATT
*
4306075 ATTAATTAACTATATAATA
1 A-TAATTAAATATATAATA
4306094 ATCCAGCAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 14 0.37
27 24 0.63
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (27 bp):
ATAATTAAATATATAATATTAATAATT
Found at i:4306243 original size:7 final size:7
Alignment explanation
Indices: 4306231--4306271 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
4306221 AATTATACTA
4306231 AAAAAAG
1 AAAAAAG
*
4306238 AAAAAAT
1 AAAAAAG
**
4306245 AAACCAG
1 AAAAAAG
4306252 AAAAAAG
1 AAAAAAG
4306259 AAAAAAG
1 AAAAAAG
4306266 AAAAAA
1 AAAAAA
4306272 AAACACCTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:4306255 original size:14 final size:13
Alignment explanation
Indices: 4306230--4306276 Score: 51
Period size: 14 Copynumber: 3.5 Consensus size: 13
4306220 TAATTATACT
4306230 AAAAA-AAGAAAA
1 AAAAACAAGAAAA
*
4306242 AATAAACCAGAAAA
1 AA-AAACAAGAAAA
*
4306256 AAGAAAAAAGAAAA
1 AA-AAACAAGAAAA
4306270 AAAAACA
1 AAAAACA
4306277 CCTACCAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
12 2 0.07
13 7 0.25
14 19 0.68
ACGTcount: A:0.83, C:0.06, G:0.09, T:0.02
Consensus pattern (13 bp):
AAAAACAAGAAAA
Found at i:4317939 original size:4 final size:4
Alignment explanation
Indices: 4317925--4317972 Score: 60
Period size: 4 Copynumber: 11.0 Consensus size: 4
4317915 ACTTTGACTG
4317925 AATT AAATT AATT AATT AATT AATT GAATT AAATT AATT AATTT AATT
1 AATT -AATT AATT AATT AATT AATT -AATT -AATT AATT AA-TT AATT
4317973 TTAATCGAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
4 24 0.60
5 16 0.40
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:4317939 original size:9 final size:9
Alignment explanation
Indices: 4317925--4317972 Score: 64
Period size: 9 Copynumber: 5.4 Consensus size: 9
4317915 ACTTTGACTG
4317925 AATTAAATT
1 AATTAAATT
4317934 AATT-AATT
1 AATTAAATT
4317942 AATT-AATT
1 AATTAAATT
4317950 GAATTAAATT
1 -AATTAAATT
*
4317960 AATTAATTT
1 AATTAAATT
4317969 AATT
1 AATT
4317973 TTAATCGAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 12 0.33
9 20 0.56
10 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (9 bp):
AATTAAATT
Found at i:4320768 original size:15 final size:16
Alignment explanation
Indices: 4320738--4320776 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
4320728 TAGTAAAAAT
4320738 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
4320755 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
4320770 ATAATTT
1 ATAATTT
4320777 TTAAAAGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:4324951 original size:17 final size:18
Alignment explanation
Indices: 4324919--4324958 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
4324909 AACGAGATTC
*
4324919 CTTTCTCCTTCTCTTATT
1 CTTTCTCCTTCACTTATT
4324937 CTTTC-CCTTCACTTATT
1 CTTTCTCCTTCACTTATT
*
4324954 TTTTC
1 CTTTC
4324959 AAAAAATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.07, C:0.33, G:0.00, T:0.60
Consensus pattern (18 bp):
CTTTCTCCTTCACTTATT
Found at i:4333663 original size:31 final size:31
Alignment explanation
Indices: 4333614--4333674 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
4333604 AAGATTTAAG
*
4333614 AAAAAAGAGAGCTTAGATTAGAAACATACTA
1 AAAAAAAAGAGCTTAGATTAGAAACATACTA
*
4333645 AAAAAAAAGA-CTTCAGATTAGTAACATACT
1 AAAAAAAAGAGCTT-AGATTAGAAACATACT
4333675 TATTTTAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.54, C:0.11, G:0.13, T:0.21
Consensus pattern (31 bp):
AAAAAAAAGAGCTTAGATTAGAAACATACTA
Found at i:4341092 original size:2 final size:2
Alignment explanation
Indices: 4341087--4341112 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4341077 AAAAAAAAAA
4341087 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4341113 GAGAGATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4345801 original size:2 final size:2
Alignment explanation
Indices: 4345794--4345819 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
4345784 CCTAAGAGAA
4345794 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
4345820 GTAAAGAACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4350236 original size:16 final size:16
Alignment explanation
Indices: 4350217--4350249 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
4350207 CTTGCAATTC
*
4350217 GACAGGCTCTCACTTT
1 GACAGGCTCGCACTTT
4350233 GACAGGCTCGCACTTT
1 GACAGGCTCGCACTTT
4350249 G
1 G
4350250 CTTACTGTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.30, G:0.24, T:0.27
Consensus pattern (16 bp):
GACAGGCTCGCACTTT
Found at i:4360720 original size:3 final size:3
Alignment explanation
Indices: 4360712--4360744 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
4360702 TCTGTTAAAC
4360712 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
4360745 GTCATTGCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:4364148 original size:2 final size:2
Alignment explanation
Indices: 4364141--4364169 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4364131 GGTTAAGCGA
4364141 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
4364170 TCTTAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4373506 original size:32 final size:32
Alignment explanation
Indices: 4373464--4373537 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
4373454 CTAAACTTTC
*
4373464 AAATTAAAAAA-TATATAAAAACTAAAATTAAT
1 AAATTAAAAAAGTA-AAAAAAACTAAAATTAAT
* *
4373496 AAATTTAAAAAGTAAAAAAAATTAAAATTAATT
1 AAATTAAAAAAGTAAAAAAAACTAAAATTAA-T
*
4373529 AGATTAAAA
1 AAATTAAAA
4373538 TTTACAAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
32 25 0.71
33 10 0.29
ACGTcount: A:0.68, C:0.01, G:0.03, T:0.28
Consensus pattern (32 bp):
AAATTAAAAAAGTAAAAAAAACTAAAATTAAT
Found at i:4373511 original size:22 final size:24
Alignment explanation
Indices: 4373464--4373512 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
4373454 CTAAACTTTC
4373464 AAATTAAAAAATATATAAAAACTA
1 AAATTAAAAAATATATAAAAACTA
* *
4373488 AAATTAATAAAT-T-TAAAAAGTA
1 AAATTAAAAAATATATAAAAACTA
4373510 AAA
1 AAA
4373513 AAAATTAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 11 0.48
23 1 0.04
24 11 0.48
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (24 bp):
AAATTAAAAAATATATAAAAACTA
Found at i:4374106 original size:55 final size:55
Alignment explanation
Indices: 4374059--4374179 Score: 142
Period size: 55 Copynumber: 2.2 Consensus size: 55
4374049 ATAGTAGTAG
4374059 TCACTCAATTATTAAT-A-TTTTTTTGTCACCT-AACTATGAAAATTTATAAAATA
1 TCACTCAATTATTAATAATTTTTTTTGTCA-CTGAACTATGAAAATTTATAAAATA
* * * * *
4374112 TCATTTAATTATTAATAATTTTTTTTGTCACTGAATTATGAAATTTTA-AAAATGG
1 TCACTCAATTATTAATAATTTTTTTTGTCACTGAACTATGAAAATTTATAAAAT-A
*
4374167 TCAATCAATTATT
1 TCACTCAATTATT
4374180 CAATTTCATC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
53 14 0.25
54 8 0.14
55 35 0.61
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (55 bp):
TCACTCAATTATTAATAATTTTTTTTGTCACTGAACTATGAAAATTTATAAAATA
Found at i:4375501 original size:29 final size:28
Alignment explanation
Indices: 4375469--4375524 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
4375459 TTTTTCTTAT
*
4375469 TTTTAATGACTTTTTGGTAACAAATATTC
1 TTTTAATGA-ATTTTGGTAACAAATATTC
** *
4375498 TTTTCTTGAATTTTGGTAACAATTATT
1 TTTTAATGAATTTTGGTAACAAATATT
4375525 ATTAAACAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.52
Consensus pattern (28 bp):
TTTTAATGAATTTTGGTAACAAATATTC
Found at i:4377581 original size:8 final size:9
Alignment explanation
Indices: 4377558--4377582 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
4377548 TAAATGTTAG
4377558 TATTTTTAT
1 TATTTTTAT
4377567 TATTTTTAT
1 TATTTTTAT
4377576 TATTTTT
1 TATTTTT
4377583 TAAGCATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TATTTTTAT
Found at i:4384948 original size:6 final size:6
Alignment explanation
Indices: 4384929--4384971 Score: 50
Period size: 6 Copynumber: 7.0 Consensus size: 6
4384919 GAAGCAGGGG
* * *
4384929 AGAAAA AGAGAA AGAAAA AGGAAA AGAAAA ATAAAA GAGAAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA -AGAAAA
4384972 CTAAAGATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
6 25 0.83
7 5 0.17
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (6 bp):
AGAAAA
Found at i:4386048 original size:27 final size:29
Alignment explanation
Indices: 4386014--4386082 Score: 81
Period size: 27 Copynumber: 2.4 Consensus size: 29
4386004 ATGCCTTATT
*
4386014 GGTGTGTTTGGGAGGA-TATATTATACC-
1 GGTGTGTTTGGGAGGATTATAATATACCG
*
4386041 GGTGTGTTAT-GGAGGATTTATAATATTCCG
1 GGTGTGTT-TGGGAGGA-TTATAATATACCG
4386071 GGTGTGTTTGGG
1 GGTGTGTTTGGG
4386083 TTGGATATTC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
27 14 0.40
28 1 0.03
29 10 0.29
30 10 0.29
ACGTcount: A:0.19, C:0.06, G:0.36, T:0.39
Consensus pattern (29 bp):
GGTGTGTTTGGGAGGATTATAATATACCG
Found at i:4390161 original size:50 final size:50
Alignment explanation
Indices: 4390086--4390418 Score: 522
Period size: 50 Copynumber: 6.5 Consensus size: 50
4390076 CCATGGCAAC
* *
4390086 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
4390136 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
4390186 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
4390236 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTGAAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGG---A--CAAA-TGA
4390292 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
4390342 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * * *
4390393 AAGTAAAAAGTGGTAACTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
4390419 CTGATCAATG
Statistics
Matches: 265, Mismatches: 11, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
50 190 0.72
51 25 0.09
53 2 0.01
55 3 0.01
56 45 0.17
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:4390204 original size:100 final size:100
Alignment explanation
Indices: 4390086--4390418 Score: 522
Period size: 106 Copynumber: 3.3 Consensus size: 100
4390076 CCATGGCAAC
* *
4390086 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAGTGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
4390151 GCTTCGGCTACACTTATCTGATCAAGGACAAATGA
66 GCTTCGGCTACACTTATCTGATCAAGGACAAATGA
4390186 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
*
4390251 GCTTCGGCTACACTTATCTGATCAAGGATAAGTGAAAGTGA
66 GCTTCGGCTACACTTATCTGATCAAGG---A--CAAA-TGA
4390292 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
* *
4390357 GCTTCAGCTACACTTATCTGATCAAGGACAAATGGC
66 GCTTCGGCTACACTTATCTGATCAAGGACAAAT-GA
* * * *
4390393 AAGTAAAAAGTGGTAACTTCGGCTAC
1 AAGTGATAAGTGATAGCTTCGGCTAC
4390419 CTGATCAATG
Statistics
Matches: 216, Mismatches: 10, Indels: 13
0.90 0.04 0.05
Matches are distributed among these distances:
100 91 0.42
101 26 0.12
103 2 0.01
105 3 0.01
106 94 0.44
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.26
Consensus pattern (100 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTGATA
GCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:4390436 original size:31 final size:31
Alignment explanation
Indices: 4390398--4390456 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
4390388 ATGGCAAGTA
4390398 AAAAGTGGTAACTTCGGCTACCTGATCAATG
1 AAAAGTGGTAACTTCGGCTACCTGATCAATG
*
4390429 AAAAGTGGTAGCTTCGGCTACCTGATCA
1 AAAAGTGGTAACTTCGGCTACCTGATCA
4390457 TCGGCTACTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (31 bp):
AAAAGTGGTAACTTCGGCTACCTGATCAATG
Found at i:4390464 original size:46 final size:46
Alignment explanation
Indices: 4390411--4390502 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
4390401 AGTGGTAACT
* *
4390411 TCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
* * *
4390457 TCGGCTACTTGATTAGTGAAAAATGGTAGCTCCGGCTACCTGATCA
1 TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
4390503 GTGAATAGTG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (46 bp):
TCGGCTACCTGATCAATGAAAAATGGTAGCTCCGGCTACCTGATCA
Found at i:4390506 original size:31 final size:31
Alignment explanation
Indices: 4390458--4390526 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
4390448 ACCTGATCAT
* * *
4390458 CGGCTACTTGATTAGTGAAAAATGGTAGCTC
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
* * *
4390489 CGGCTACCTGATCAGTGAATAGTGATAGCTT
1 CGGCTACCTGATCAGTGAAAAATGATAGCTC
4390520 CGGCTAC
1 CGGCTAC
4390527 AAGTGACAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (31 bp):
CGGCTACCTGATCAGTGAAAAATGATAGCTC
Found at i:4407918 original size:25 final size:25
Alignment explanation
Indices: 4407889--4407941 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
4407879 CAATTAACAA
4407889 AAATTCCCATATTTGAAAGCAAATC
1 AAATTCCCATATTTGAAAGCAAATC
*
4407914 AAATTCGCATATTTGAAAGCAAATC
1 AAATTCCCATATTTGAAAGCAAATC
4407939 AAA
1 AAA
4407942 CACTTTCAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.26
Consensus pattern (25 bp):
AAATTCCCATATTTGAAAGCAAATC
Found at i:4408016 original size:13 final size:13
Alignment explanation
Indices: 4407998--4408022 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4407988 TAAAGTCCTC
4407998 TTCTTTTTTTTTT
1 TTCTTTTTTTTTT
4408011 TTCTTTTTTTTT
1 TTCTTTTTTTTT
4408023 CCTTTAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTCTTTTTTTTTT
Found at i:4417313 original size:94 final size:94
Alignment explanation
Indices: 4417152--4417339 Score: 349
Period size: 94 Copynumber: 2.0 Consensus size: 94
4417142 TAATAACGTC
4417152 GAACATGAGGTGTCAACTGAATAAACATAAGATGAATATGCATATTTCAAAAGATATTACCAGTA
1 GAACATGAGGTGTCAACTGAATAAACATAAGATGAATATGCATATTTCAAAAGATATTACCAGTA
4417217 GTAGCATTAGAAAATCTAGCAAGTATCTT
66 GTAGCATTAGAAAATCTAGCAAGTATCTT
* *
4417246 GAACATGGGGTGTCAACTGAATAAACATAAGATGAATATGCATATTTCACAAGATATTACCAGTA
1 GAACATGAGGTGTCAACTGAATAAACATAAGATGAATATGCATATTTCAAAAGATATTACCAGTA
*
4417311 GTAGCATTAGAAAATCTAGTAAGTATCTT
66 GTAGCATTAGAAAATCTAGCAAGTATCTT
4417340 TGCATCTTGT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 91 1.00
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (94 bp):
GAACATGAGGTGTCAACTGAATAAACATAAGATGAATATGCATATTTCAAAAGATATTACCAGTA
GTAGCATTAGAAAATCTAGCAAGTATCTT
Found at i:4421886 original size:30 final size:28
Alignment explanation
Indices: 4421852--4421916 Score: 78
Period size: 27 Copynumber: 2.3 Consensus size: 28
4421842 ATCCAACCCA
**
4421852 AACACACCCGGAATATTGTAAATCCTCCAT
1 AACACACCCGG--TATAATAAATCCTCCAT
*
4421882 AACACA-CCGGTATAATATATCCTCCAT
1 AACACACCCGGTATAATAAATCCTCCAT
4421909 AACACACC
1 AACACACC
4421917 AGTAAGGCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 20 0.65
28 1 0.03
29 4 0.13
30 6 0.19
ACGTcount: A:0.38, C:0.32, G:0.08, T:0.22
Consensus pattern (28 bp):
AACACACCCGGTATAATAAATCCTCCAT
Found at i:4422903 original size:12 final size:12
Alignment explanation
Indices: 4422888--4422918 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
4422878 TTCTCTTTTA
4422888 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
4422900 TTTTTCTTTCTC
1 TTTTTCTTTCCC
4422912 TTTTTCT
1 TTTTTCT
4422919 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:4423306 original size:15 final size:14
Alignment explanation
Indices: 4423288--4423318 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
4423278 TTAATTTATT
4423288 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
4423303 TAATAATAATCTAA
1 TAATAATAATCTAA
4423317 TA
1 TA
4423319 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:4423329 original size:21 final size:20
Alignment explanation
Indices: 4423305--4423373 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
4423295 AATGCTAATA
4423305 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
4423326 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
4423345 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
4423366 ATAATAAT
1 ATAATAAT
4423374 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:4427422 original size:46 final size:46
Alignment explanation
Indices: 4427228--4427408 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
4427218 TGTAACCCGC
* * * *
4427228 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
* *
4427274 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CAT
* * *
4427324 -C-TCA-TGAACTTGAACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
4427367 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTC
4427409 AACCATCCTA
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 71 0.62
47 31 0.27
48 2 0.02
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
Found at i:4447550 original size:14 final size:15
Alignment explanation
Indices: 4447506--4447549 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
4447496 GGTGTCTAAT
*
4447506 TGTCACTTCTAAAAA
1 TGTCAATTCTAAAAA
4447521 TGTCAATTCTAAAAA
1 TGTCAATTCTAAAAA
*
4447536 TGTCAATTCCAAAA
1 TGTCAATTCTAAAA
4447550 TTTTTTGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (15 bp):
TGTCAATTCTAAAAA
Found at i:4448447 original size:18 final size:18
Alignment explanation
Indices: 4448426--4448469 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
4448416 CTTTTTTGAG
*
4448426 TTTTTTTCACATTTT-AA
1 TTTTTTTTACATTTTAAA
*
4448443 TTTTTATATACATTTTAAA
1 TTTTT-TTTACATTTTAAA
4448462 TTTTTTTT
1 TTTTTTTT
4448470 TATAATTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 5 0.23
18 10 0.45
19 7 0.32
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTTTTTTACATTTTAAA
Found at i:4464389 original size:58 final size:59
Alignment explanation
Indices: 4464292--4464410 Score: 213
Period size: 58 Copynumber: 2.0 Consensus size: 59
4464282 ACATACAAGT
*
4464292 ACTTTCTTGATTAATAAAAAAATATAGAAGTAATATGTGTAACTATTACCAAAAATATA
1 ACTTTCTTGATTAATAAAAAAATATAGAAGTAATATGTGTAACTACTACCAAAAATATA
*
4464351 ACTTTCTTGATTAAT-AAAAAATATAGAAGTAATGTGTGTAACTACTACCAAAAATATA
1 ACTTTCTTGATTAATAAAAAAATATAGAAGTAATATGTGTAACTACTACCAAAAATATA
4464409 AC
1 AC
4464411 GTATTAGTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
58 43 0.74
59 15 0.26
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (59 bp):
ACTTTCTTGATTAATAAAAAAATATAGAAGTAATATGTGTAACTACTACCAAAAATATA
Found at i:4478444 original size:36 final size:38
Alignment explanation
Indices: 4478404--4478491 Score: 114
Period size: 35 Copynumber: 2.4 Consensus size: 38
4478394 GCAAAGTGTG
*
4478404 AAATGTAGGTATGGTATCAAAT-CCATACTGAGTT-AA
1 AAATGTAGGTATGGTATCAAATCCCATACCGAGTTGAA
**
4478440 AAATGTAGGTATGG---CATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATCAAATCCCATACCGAGTTGAA
4478475 AAATGTAGGTATGGTAT
1 AAATGTAGGTATGGTAT
4478492 TTCAATGAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
33 3 0.07
34 11 0.25
35 16 0.36
36 14 0.32
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.31
Consensus pattern (38 bp):
AAATGTAGGTATGGTATCAAATCCCATACCGAGTTGAA
Found at i:4489868 original size:37 final size:38
Alignment explanation
Indices: 4489827--4489915 Score: 114
Period size: 35 Copynumber: 2.4 Consensus size: 38
4489817 GCAAAGTGTG
*
4489827 AAATGTAGGTATGGTATCAAAT-CCATACTGAGTTAAA
1 AAATGTAGGTATGGTATCAAATCCCATACCGAGTTAAA
** *
4489864 AAATGTAGGTATGG---CATTTCCCATACCGAGTTGAA
1 AAATGTAGGTATGGTATCAAATCCCATACCGAGTTAAA
4489899 AAATGTAGGTATGGTAT
1 AAATGTAGGTATGGTAT
4489916 TTCAATGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
34 3 0.07
35 27 0.61
37 14 0.32
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.30
Consensus pattern (38 bp):
AAATGTAGGTATGGTATCAAATCCCATACCGAGTTAAA
Found at i:4498844 original size:16 final size:16
Alignment explanation
Indices: 4498806--4498837 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
4498796 GTGGACCGAA
4498806 AAAGCTTCCTTGAGGG
1 AAAGCTTCCTTGAGGG
4498822 AAAGCTTCCTTGAGGG
1 AAAGCTTCCTTGAGGG
4498838 CGCGCTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (16 bp):
AAAGCTTCCTTGAGGG
Found at i:4499182 original size:91 final size:93
Alignment explanation
Indices: 4498952--4499182 Score: 292
Period size: 95 Copynumber: 2.5 Consensus size: 93
4498942 GATTTTTAAA
* * ** *
4498952 TTTAGGGTTTTAAGGAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTACT
1 TTTAGGGTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTACT
*
4499017 AATTTTAAAAAATTAGATTATGTTTAGTG
66 AATTTTAAAAAATTAGATTATG-TGAGTG
**
4499046 TTTACGATTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA-
1 TTTA-GGGTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTAC
4499110 TAAATTTTAAAAAATTAGATTA-G-GA-T-
65 T-AATTTTAAAAAATTAGATTATGTGAGTG
* *
4499136 TTTAGGGTATTTAAGAAAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTAGGGT-TTTAAG-GAAAAAATCAAATAAATTAGGGTTTAGGGTT
4499183 TAGAGTAACT
Statistics
Matches: 121, Mismatches: 12, Indels: 11
0.84 0.08 0.08
Matches are distributed among these distances:
89 2 0.02
90 10 0.08
91 30 0.25
92 1 0.01
94 6 0.05
95 72 0.60
ACGTcount: A:0.42, C:0.02, G:0.17, T:0.39
Consensus pattern (93 bp):
TTTAGGGTTTTAAGGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTACT
AATTTTAAAAAATTAGATTATGTGAGTG
Found at i:4500067 original size:13 final size:14
Alignment explanation
Indices: 4500051--4500086 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
4500041 CAATCTCATA
4500051 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
4500064 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
4500077 TCTC-ATTTCA
1 TCTCAATTTCA
4500087 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:4500076 original size:18 final size:19
Alignment explanation
Indices: 4500038--4500078 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
4500028 TGGTTCATGT
4500038 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
4500057 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
4500075 TTTC
1 TTTC
4500079 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:4500268 original size:39 final size:38
Alignment explanation
Indices: 4500201--4500335 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
4500191 ACCAATATGG
* * *
4500201 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
4500240 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
4500278 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
4500319 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
4500336 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:4500600 original size:18 final size:19
Alignment explanation
Indices: 4500574--4500612 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
4500564 TTTCAATTCA
4500574 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
4500593 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
4500611 AT
1 AT
4500613 ATATATCTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:4501944 original size:5 final size:5
Alignment explanation
Indices: 4501934--4501986 Score: 61
Period size: 5 Copynumber: 10.0 Consensus size: 5
4501924 TTACTTATTT
* *
4501934 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
4501982 ATATA
1 ATATA
4501987 TATTTTAACA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
5 30 0.73
6 7 0.17
7 4 0.10
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:4501950 original size:12 final size:12
Alignment explanation
Indices: 4501933--4501988 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
4501923 TTTACTTATT
4501933 TATATAATATAA
1 TATATAATATAA
4501945 TATATAATATAATA
1 TATATAATAT-A-A
4501959 TACTATAATATAA
1 TA-TATAATATAA
*
4501972 TA-ATAATTTAA
1 TATATAATATAA
4501983 TATATA
1 TATATA
4501989 TTTTAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:4506515 original size:13 final size:14
Alignment explanation
Indices: 4506499--4506534 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
4506489 CAATCTCATA
4506499 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
4506512 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
4506525 TCTC-ATTTCA
1 TCTCAATTTCA
4506535 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:4506524 original size:18 final size:19
Alignment explanation
Indices: 4506486--4506526 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
4506476 TGGTTCATGT
4506486 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
4506505 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
4506523 TTTC
1 TTTC
4506527 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:4506715 original size:39 final size:38
Alignment explanation
Indices: 4506648--4506782 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
4506638 ACCAATATGG
* * *
4506648 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
4506687 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
4506725 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
4506766 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
4506783 ACTCGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:4507047 original size:18 final size:19
Alignment explanation
Indices: 4507021--4507059 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
4507011 TTTCAATTCA
4507021 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
4507040 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
4507058 AT
1 AT
4507060 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:4508386 original size:5 final size:5
Alignment explanation
Indices: 4508376--4508420 Score: 54
Period size: 5 Copynumber: 8.4 Consensus size: 5
4508366 TTACTTATTT
*
4508376 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA AT
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA AT
4508421 TTAGTATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
5 24 0.69
6 7 0.20
7 4 0.11
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:4508392 original size:12 final size:12
Alignment explanation
Indices: 4508375--4508430 Score: 60
Period size: 12 Copynumber: 4.5 Consensus size: 12
4508365 TTTACTTATT
4508375 TATATAATATAA
1 TATATAATATAA
4508387 TATATAATATAATA
1 TATATAATAT-A-A
4508401 TACTATAATATAA
1 TA-TATAATATAA
* *
4508414 TA-ATAATTTAG
1 TATATAATATAA
4508425 TATATA
1 TATATA
4508431 TTTTAACACA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
11 9 0.24
12 13 0.34
13 4 0.11
14 4 0.11
15 8 0.21
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:4509032 original size:125 final size:126
Alignment explanation
Indices: 4508731--4509215 Score: 722
Period size: 126 Copynumber: 3.9 Consensus size: 126
4508721 TCGTTACAAT
*
4508731 GTGTCTGCGCAAACAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
1 GTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
* *
4508796 AAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGAC
66 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGAC
* * *
4508857 GTGTCTGTGCAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAG
1 GTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
*
4508922 AAGCTTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCT-AAAAAATAATTTTGAGAAGAC
66 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGAC
* * * * *
4508982 GTGTCTACGCAAATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAA
1 GTGTCTGCGCAAATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAA
* * * *
4509046 GAAGCTCCCACGTGGATGCTCTTTTGGTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGAT
65 GAAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGAC
* ** * *
4509108 GTTTCTGCATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAACAAAAGTATTGAAAG
1 GTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
* * * *
4509173 AAGTTCCCACGTGGACGCTCCTTTGCTACAGTGGTTTCTGAAA
66 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
4509216 TAACTTGGGC
Statistics
Matches: 326, Mismatches: 30, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
125 115 0.35
126 211 0.65
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (126 bp):
GTGTCTGCGCAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGAC
Found at i:4509200 original size:251 final size:251
Alignment explanation
Indices: 4508731--4509204 Score: 727
Period size: 251 Copynumber: 1.9 Consensus size: 251
4508721 TCGTTACAAT
*
4508731 GTGTCTGCGCAAACAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
1 GTGTCTACGCAAACAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
4508796 AAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGT
66 AAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGT
** *
4508861 CTGTGCAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGC
131 CTGCACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAGAAGC
*
4508926 TTCCACGTGGACGCTCTTTTGCTACAGTAGTCTCTAAAAAATAATTTTGAGAAGAC
196 TTCCACGTGGACGCTCCTTTGCTACAGTAGTCTCTAAAAAATAATTTTGAGAAGAC
* * * * *
4508982 GTGTCTACGCAAATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAA
1 GTGTCTACGCAAACAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAA
** * * * * *
4509046 GAAGCTCCCACGTGGATGCTCTTTTGGTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGATGTT
65 GAAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTG
* * * *
4509111 TCTGCATAAATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAACAAAAGTATTGAAAGAAG
130 TCTGCACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAGAAG
4509176 -TTCCCACGTGGACGCTCCTTTGCTACAGT
195 CTT-CCACGTGGACGCTCCTTTGCTACAGT
4509205 GGTTTCTGAA
Statistics
Matches: 200, Mismatches: 21, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
250 2 0.01
251 196 0.98
252 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (251 bp):
GTGTCTACGCAAACAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAG
AAGCTCCCACGTGGACACTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGT
CTGCACAAATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAACAAAAGTACTGAAAGAAGC
TTCCACGTGGACGCTCCTTTGCTACAGTAGTCTCTAAAAAATAATTTTGAGAAGAC
Found at i:4511471 original size:15 final size:15
Alignment explanation
Indices: 4511451--4511481 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
4511441 TTTTTATTTT
*
4511451 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
4511466 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
4511481 A
1 A
4511482 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:4511548 original size:11 final size:11
Alignment explanation
Indices: 4511518--4511560 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
4511508 TTTTGATAGG
* *
4511518 AATTTAAGATA
1 AATTTGAGAGA
4511529 AATTTGAGAG-
1 AATTTGAGAGA
4511539 -ATTTGAGAGA
1 AATTTGAGAGA
4511549 AATTTGAGAGA
1 AATTTGAGAGA
4511560 A
1 A
4511561 TATTGAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 9 0.32
11 19 0.68
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:4513089 original size:2 final size:2
Alignment explanation
Indices: 4513082--4513141 Score: 93
Period size: 2 Copynumber: 29.5 Consensus size: 2
4513072 AGGGCTTAAA
4513082 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
* *
4513124 AC AC TC AC TC AC ATC AC A
1 AC AC AC AC AC AC A-C AC A
4513142 TTCACAAACC
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
2 51 0.96
3 2 0.04
ACGTcount: A:0.47, C:0.48, G:0.00, T:0.05
Consensus pattern (2 bp):
AC
Found at i:4517745 original size:34 final size:34
Alignment explanation
Indices: 4517701--4517767 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
4517691 ACCCTAGCCG
4517701 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
* *
4517735 CAGCATGTGCTCCCCTCTGCTCCACTACCGACG
1 CAGCAGGTGCTCCCCTCTGCTCCACCACCGACG
4517768 TCTGCCAGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.15, C:0.48, G:0.19, T:0.18
Consensus pattern (34 bp):
CAGCAGGTGCTCCCCTCTGCTCCACCACCGACGC
Found at i:4518655 original size:19 final size:18
Alignment explanation
Indices: 4518620--4518660 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
4518610 TTGTTAATTC
4518620 ACTTTTGTCCATTTTTTT
1 ACTTTTGTCCATTTTTTT
*
4518638 ACTTTT-TCTCATTATTTT
1 ACTTTTGTC-CATTTTTTT
4518656 A-TTTT
1 ACTTTT
4518661 AGTCTTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.15, C:0.15, G:0.02, T:0.68
Consensus pattern (18 bp):
ACTTTTGTCCATTTTTTT
Found at i:4518734 original size:25 final size:24
Alignment explanation
Indices: 4518706--4518763 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 24
4518696 CTGCTATCAT
*
4518706 TATTATATT-TTATTTATTAGCATGG
1 TATTATATTATTA-TTATTA-CATAG
*
4518731 TATTATTATTATTATTATTACTTAG
1 TATTA-TATTATTATTATTACATAG
4518756 TATTATAT
1 TATTATAT
4518764 ACATATATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 3 0.10
25 13 0.45
26 10 0.34
27 3 0.10
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (24 bp):
TATTATATTATTATTATTACATAG
Found at i:4518817 original size:18 final size:19
Alignment explanation
Indices: 4518781--4518818 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
4518771 TATCATATAG
*
4518781 TATTATTAATTTGTTTTAA
1 TATTATTAATTTGTGTTAA
*
4518800 TATTATTATTTTG-GTTAA
1 TATTATTAATTTGTGTTAA
4518818 T
1 T
4518819 GTATTTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (19 bp):
TATTATTAATTTGTGTTAA
Found at i:4521066 original size:23 final size:22
Alignment explanation
Indices: 4521027--4521070 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
4521017 CATGAGCATT
4521027 GTTATCAATGCAGGAAGACGTAG
1 GTTATCAATGCAGGAAG-CGTAG
*
4521050 GTTAT-AATGCACTGAAGCGTA
1 GTTATCAATGCA-GGAAGCGTA
4521071 TTATCTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (22 bp):
GTTATCAATGCAGGAAGCGTAG
Found at i:4555274 original size:111 final size:111
Alignment explanation
Indices: 4554984--4555445 Score: 629
Period size: 111 Copynumber: 4.1 Consensus size: 111
4554974 GTAAGTGGGC
* * *
4554984 CTGCTGCTGCCGAACCAGCTGGCCATTCCAGGCAGGACCTGTGCCTTGAGCACATGACTGCTCAT
1 CTGCTGCTGCTGAACCAGCTGGCCATTCCAGGCAGGACCTGTCCCTTGAGCATATGACTGCTCAT
* * * *
4555049 ATCGAGGCGAGCCCATGTTTGATACACTTCCATTTC-CATAAAAGTTATT
66 ATCGAGGTGATCCCATGTTTGATACAGTTCCA-TTCGCATGAAA---ATT
* * * *
4555098 CTGATGATGCTGCTGAACCAGCTGACCATTCCAGGCAGGACCTGTGCCTTGAGCATATGTCTGCT
1 C---TGCTGCTGCTGAACCAGCTGGCCATTCCAGGCAGGACCTGTCCCTTGAGCATATGACTGCT
* * *
4555163 CATATCGAGGTGATCCCATGTTCGATACAGTTCCGTTCACATGAAAATT
63 CATATCGAGGTGATCCCATGTTTGATACAGTTCCATTCGCATGAAAATT
* * *
4555212 CTGCTGCTGCTGAACCATCTGGCCATTCCAGGCAGGACCTGTCCCTTGAGCATACGAATGCTCAT
1 CTGCTGCTGCTGAACCAGCTGGCCATTCCAGGCAGGACCTGTCCCTTGAGCATATGACTGCTCAT
*
4555277 ATCGAGGTGATCCCATGTTTGGTACAGTTCCATTCGCATGAAAATT
66 ATCGAGGTGATCCCATGTTTGATACAGTTCCATTCGCATGAAAATT
* * * ** *
4555323 CTGCTGCTGCTGAGCCATCTGGCCATTCCAGGCATGACCCATCCCTTGAACATATGACTGCTCAT
1 CTGCTGCTGCTGAACCAGCTGGCCATTCCAGGCAGGACCTGTCCCTTGAGCATATGACTGCTCAT
*
4555388 ATCGAGGTGATCCCATGTTAGATACAGTTCCATTCGCATGAAAATT
66 ATCGAGGTGATCCCATGTTTGATACAGTTCCATTCGCATGAAAATT
4555434 CTGCTGCTGCTG
1 CTGCTGCTGCTG
4555446 CTGAATTTGA
Statistics
Matches: 313, Mismatches: 31, Indels: 11
0.88 0.09 0.03
Matches are distributed among these distances:
111 213 0.68
114 5 0.02
116 3 0.01
117 92 0.29
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (111 bp):
CTGCTGCTGCTGAACCAGCTGGCCATTCCAGGCAGGACCTGTCCCTTGAGCATATGACTGCTCAT
ATCGAGGTGATCCCATGTTTGATACAGTTCCATTCGCATGAAAATT
Found at i:4556692 original size:1 final size:1
Alignment explanation
Indices: 4556681--4556736 Score: 58
Period size: 1 Copynumber: 56.0 Consensus size: 1
4556671 ATTATAAGTG
* * * * * *
4556681 AAAACAAAAAAAAAAAAAAACAAAACAAAACAAAAACAAAAACAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4556737 CAGTCCTTTG
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:4561390 original size:29 final size:31
Alignment explanation
Indices: 4561331--4561390 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
4561321 TTATTGGGGA
* * *
4561331 ATGAATAACAAACACGAATATAAATTATTTC
1 ATGAAAAAAAAACACGAATATAAAATATTTC
4561362 ATGAAAAAAAAACAC-AA-ATAAAATATTTC
1 ATGAAAAAAAAACACGAATATAAAATATTTC
4561391 CACCCGCTGC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 11 0.42
30 2 0.08
31 13 0.50
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.25
Consensus pattern (31 bp):
ATGAAAAAAAAACACGAATATAAAATATTTC
Found at i:4568196 original size:16 final size:16
Alignment explanation
Indices: 4568175--4568207 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4568165 TTTTGAAAGA
4568175 AATTTAA-AATCTTTAT
1 AATTTAACAAT-TTTAT
4568191 AATTTAACAATTTTAT
1 AATTTAACAATTTTAT
4568207 A
1 A
4568208 GCCCTTGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.81
17 3 0.19
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTTAACAATTTTAT
Found at i:4569669 original size:14 final size:14
Alignment explanation
Indices: 4569634--4569669 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
4569624 AATTACCTAT
*
4569634 ATATATAAATATAA
1 ATATATATATATAA
4569648 ATATATATATATAA
1 ATATATATATATAA
*
4569662 ATGTATAT
1 ATATATAT
4569670 GAACCAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
ATATATATATATAA
Found at i:4576630 original size:114 final size:114
Alignment explanation
Indices: 4576489--4576723 Score: 407
Period size: 114 Copynumber: 2.1 Consensus size: 114
4576479 AGTAAACTCC
* *
4576489 AATATTCTCTCTCAGCATCACCTAAACATATTACCCGGCACTTTATCAGTTGCTCATCTAATATA
1 AATATTCTCTCTCAGCATCAACTAAACATATTACCCAGCACTTTATCAGTTGCTCATCTAATATA
4576554 TCACGTTCATATCATTGACCTAAAGTCATTAGTTCCTCTTGTATTACAT
66 TCACGTTCATATCATTGACCTAAAGTCATTAGTTCCTCTTGTATTACAT
*
4576603 AATATTCTCTCTCGGCATCAACTAAACATATTACCCAGCACTTTATCAGTTGCTCATCTAATATA
1 AATATTCTCTCTCAGCATCAACTAAACATATTACCCAGCACTTTATCAGTTGCTCATCTAATATA
* * *
4576668 TCAGGTTCATATTATTGACCTAAAGTCATTAGTTTCTCTTGTATTACAT
66 TCACGTTCATATCATTGACCTAAAGTCATTAGTTCCTCTTGTATTACAT
*
4576717 ATTATTC
1 AATATTC
4576724 CTTATATGCA
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
114 114 1.00
ACGTcount: A:0.29, C:0.23, G:0.09, T:0.38
Consensus pattern (114 bp):
AATATTCTCTCTCAGCATCAACTAAACATATTACCCAGCACTTTATCAGTTGCTCATCTAATATA
TCACGTTCATATCATTGACCTAAAGTCATTAGTTCCTCTTGTATTACAT
Found at i:4579419 original size:17 final size:17
Alignment explanation
Indices: 4579397--4579433 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
4579387 GATTGAAAAT
* *
4579397 TTTATTGTAATCATATC
1 TTTATTGAAATCACATC
4579414 TTTATTGAAATCACATC
1 TTTATTGAAATCACATC
4579431 TTT
1 TTT
4579434 GAAGTAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.51
Consensus pattern (17 bp):
TTTATTGAAATCACATC
Found at i:4583213 original size:14 final size:14
Alignment explanation
Indices: 4583194--4583223 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
4583184 TTAAATCTAG
4583194 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
4583208 ACCAATCCAATTCA
1 ACCAATCCAAATCA
4583222 AC
1 AC
4583224 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:4584531 original size:46 final size:44
Alignment explanation
Indices: 4584472--4584586 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
4584462 ACAGGACAGA
* *
4584472 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
4584518 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
4584562 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
4584587 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:4584567 original size:44 final size:45
Alignment explanation
Indices: 4584472--4584605 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
4584462 ACAGGACAGA
* *
4584472 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
4584518 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
4584562 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
4584606 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:4588652 original size:31 final size:31
Alignment explanation
Indices: 4588593--4588668 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 31
4588583 ACACACATAT
*
4588593 ATATACTAAATAAAATAATAAAATAATAATAA
1 ATAT-CTAATTAAAATAATAAAATAATAATAA
* *
4588625 ATATCTTATTAAAAT-ATTAAATAAATAATAA
1 ATATCTAATTAAAATAATAAAAT-AATAATAA
*
4588656 TTATCTAATTAAA
1 ATATCTAATTAAA
4588669 TAACTATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
30 6 0.16
31 28 0.74
32 4 0.11
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.36
Consensus pattern (31 bp):
ATATCTAATTAAAATAATAAAATAATAATAA
Found at i:4588658 original size:23 final size:23
Alignment explanation
Indices: 4588599--4588658 Score: 56
Period size: 23 Copynumber: 2.7 Consensus size: 23
4588589 ATATATATAC
4588599 TAAAT-AA-AATAA-TAAAATAA
1 TAAATAAATAATAATTAAAATAA
* * *
4588619 T-AATAAATATCTTATTAAAATAT
1 TAAATAAATA-ATAATTAAAATAA
4588642 TAAATAAATAATAATTA
1 TAAATAAATAATAATTA
4588659 TCTAATTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
19 3 0.10
20 3 0.10
21 1 0.03
22 2 0.07
23 13 0.43
24 8 0.27
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
TAAATAAATAATAATTAAAATAA
Found at i:4592842 original size:44 final size:44
Alignment explanation
Indices: 4592779--4592939 Score: 205
Period size: 44 Copynumber: 3.5 Consensus size: 44
4592769 TTTGAGTACT
4592779 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
* *
4592823 TCTGATTAGTGACAAGTGATAAATGATAAGTGGTAGCTTTGGCTACACTTA
1 TCTGATCAGTGACAA--G-----TGATAAGTGGTAGCTTTAGCTACACTTA
* * *
4592874 TCTAATCAATGACAAGTGATAAGTGGTAGTTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
4592918 TCTGATCAGTAACAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
4592940 ATGTGATCAG
Statistics
Matches: 100, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
44 59 0.59
46 1 0.01
49 1 0.01
51 39 0.39
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (44 bp):
TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:4592862 original size:51 final size:49
Alignment explanation
Indices: 4592786--4592942 Score: 189
Period size: 51 Copynumber: 3.2 Consensus size: 49
4592776 ACTTCTGATC
*
4592786 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAGTGACA
1 AGTGACAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGA-TAGT-ACA
* *
4592837 AGTGATAAATGATAAGTGGTAGCTTTGGCTACACTTATCT-A-A-T-CA
1 AGTGACAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATAGTACA
* *
4592882 A-TGACAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGTAACA
1 AGTGACAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGAT-AGT-ACA
*
4592932 AGTGATAAATG
1 AGTGACAAATG
4592943 TGATCAGTGT
Statistics
Matches: 90, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
44 34 0.38
45 4 0.04
47 2 0.02
48 2 0.02
50 4 0.04
51 44 0.49
ACGTcount: A:0.34, C:0.13, G:0.22, T:0.32
Consensus pattern (49 bp):
AGTGACAAATGATAAGTGGTAGCTTTAGCTACACTTATCTGATAGTACA
Found at i:4594441 original size:15 final size:15
Alignment explanation
Indices: 4594421--4594464 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
4594411 ATTTATTTAG
4594421 AAAATTCAATTAATT
1 AAAATTCAATTAATT
*
4594436 AAAATT-ATTTAATT
1 AAAATTCAATTAATT
*
4594450 AAAAATCAATTAATT
1 AAAATTCAATTAATT
4594465 TACTTGGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAATTCAATTAATT
Found at i:4598003 original size:2 final size:2
Alignment explanation
Indices: 4597998--4598032 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
4597988 ACATATATAC
*
4597998 AG AG AG AG AC AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4598033 CTGATAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4600057 original size:13 final size:13
Alignment explanation
Indices: 4600035--4600066 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
4600025 CCCCTCGTCA
4600035 AATTAATTTTTTT
1 AATTAATTTTTTT
4600048 AATT-ATTTTTTT
1 AATTAATTTTTTT
4600060 AA-TAATT
1 AATTAATT
4600067 CTATCGTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.06
12 13 0.72
13 4 0.22
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
AATTAATTTTTTT
Found at i:4601350 original size:17 final size:18
Alignment explanation
Indices: 4601324--4601357 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
4601314 TTTATTTGAT
4601324 TCTTAAT-AAATATTAAC
1 TCTTAATAAAATATTAAC
*
4601341 TCTTACTAAAATATTAA
1 TCTTAATAAAATATTAA
4601358 TGGTAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (18 bp):
TCTTAATAAAATATTAAC
Found at i:4601464 original size:19 final size:19
Alignment explanation
Indices: 4601423--4601470 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
4601413 TAAGTGTGAA
***
4601423 TATTATAAAAAAATAAGGT
1 TATTATAAAAAAATAAACC
*
4601442 TATTATAAAAAGATAAACC
1 TATTATAAAAAAATAAACC
*
4601461 TATTTTAAAA
1 TATTATAAAA
4601471 TACAATTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.33
Consensus pattern (19 bp):
TATTATAAAAAAATAAACC
Found at i:4604417 original size:8 final size:8
Alignment explanation
Indices: 4604404--4604442 Score: 78
Period size: 8 Copynumber: 4.9 Consensus size: 8
4604394 ATTTTTATTT
4604404 GTTCCACA
1 GTTCCACA
4604412 GTTCCACA
1 GTTCCACA
4604420 GTTCCACA
1 GTTCCACA
4604428 GTTCCACA
1 GTTCCACA
4604436 GTTCCAC
1 GTTCCAC
4604443 TTGTGGGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.23, C:0.38, G:0.13, T:0.26
Consensus pattern (8 bp):
GTTCCACA
Found at i:4605298 original size:24 final size:24
Alignment explanation
Indices: 4605251--4605306 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
4605241 AGAGAAGAAA
* *
4605251 TTTTTTGAGATTCAATAAGAGATT
1 TTTTTTTAGATTCAAGAAGAGATT
* *
4605275 TTTTTTTAGATTCAAGAGGGGATT
1 TTTTTTTAGATTCAAGAAGAGATT
4605299 TTTCTTTT
1 TTT-TTTT
4605307 TTTGAGATTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 23 0.85
25 4 0.15
ACGTcount: A:0.25, C:0.05, G:0.18, T:0.52
Consensus pattern (24 bp):
TTTTTTTAGATTCAAGAAGAGATT
Found at i:4605792 original size:3 final size:3
Alignment explanation
Indices: 4605786--4605820 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
4605776 ATAATAATAA
4605786 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
4605821 GTGTATATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:4605922 original size:3 final size:3
Alignment explanation
Indices: 4605914--4605949 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
4605904 TGTATTTCTA
4605914 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4605950 ATGGTAGTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:4606075 original size:16 final size:15
Alignment explanation
Indices: 4606044--4606086 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
4606034 CCTTCATTCC
*
4606044 ATTATTATTATTACT
1 ATTATTATTTTTACT
4606059 ATTATTATATTTTACT
1 ATTATTAT-TTTTACT
*
4606075 ATCATTATTTTT
1 ATTATTATTTTT
4606087 CATACGTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTATTATTTTTACT
Found at i:4606212 original size:16 final size:16
Alignment explanation
Indices: 4606191--4606222 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4606181 CTATTGTTAC
4606191 TGTTATTATCATCACT
1 TGTTATTATCATCACT
*
4606207 TGTTATTCTCATCACT
1 TGTTATTATCATCACT
4606223 ATTATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.22, G:0.06, T:0.50
Consensus pattern (16 bp):
TGTTATTATCATCACT
Found at i:4606264 original size:11 final size:13
Alignment explanation
Indices: 4606234--4606265 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
4606224 TTATTATAAT
4606234 TTATTATTGTTAC
1 TTATTATTGTTAC
4606247 TTATTATT-TTAC
1 TTATTATTGTTAC
4606259 -TATTATT
1 TTATTATT
4606266 ATCTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.37
12 4 0.21
13 8 0.42
ACGTcount: A:0.25, C:0.06, G:0.03, T:0.66
Consensus pattern (13 bp):
TTATTATTGTTAC
Found at i:4606476 original size:22 final size:22
Alignment explanation
Indices: 4606447--4606511 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
4606437 TATGTTATTA
4606447 TATATTTTACTATTATTATTGT
1 TATATTTTACTATTATTATTGT
* * * *
4606469 TGTATTTTTCTATTATTGTTAT
1 TATATTTTACTATTATTATTGT
* *
4606491 TATATTTTCCT-TTATTTTTGT
1 TATATTTTACTATTATTATTGT
4606512 ATTTACTTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
21 8 0.23
22 27 0.77
ACGTcount: A:0.20, C:0.06, G:0.06, T:0.68
Consensus pattern (22 bp):
TATATTTTACTATTATTATTGT
Found at i:4606485 original size:3 final size:3
Alignment explanation
Indices: 4606222--4606466 Score: 96
Period size: 3 Copynumber: 82.3 Consensus size: 3
4606212 TTCTCATCAC
* * *
4606222 TAT TAT TAT AATT TAT TAT TGT TACT TAT TAT T-T TAC TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
4606268 CTAA TA- TAT CAT CAT TAT CAT TAT T-T TCAT TAT AACT TAA TA- GAT
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TAT
* * * *
4606313 CAT CAT CAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
4606361 CAC TACT T-T TAT TAC TAT TAT T-T AAT ATAT TAT TTT TAC TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
** * * * * *
4606406 CGT CA- TAT TGT TAC TAT TAC TAT TA- TAT TAT TA- TGT TAT TAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
*
4606452 T-T TAC TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
4606467 GTTGTATTTT
Statistics
Matches: 181, Mismatches: 43, Indels: 36
0.70 0.17 0.14
Matches are distributed among these distances:
2 16 0.09
3 148 0.82
4 17 0.09
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:4609232 original size:15 final size:16
Alignment explanation
Indices: 4609214--4609244 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
4609204 GGATAAAAAT
4609214 TTAATTT-AATTTTTA
1 TTAATTTAAATTTTTA
4609229 TTAATTTAAATTTTTA
1 TTAATTTAAATTTTTA
4609245 AAATTTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TTAATTTAAATTTTTA
Found at i:4616652 original size:21 final size:22
Alignment explanation
Indices: 4616581--4616681 Score: 100
Period size: 22 Copynumber: 4.5 Consensus size: 22
4616571 GGGGGGTTTG
4616581 GTTTTTTGGAGGAGGATTGTTTTT
1 GTTTTTTGGAGGAGG-TT-TTTTT
4616605 G--TTTTGGAGGAGGTTTTTTT
1 GTTTTTTGGAGGAGGTTTTTTT
*
4616625 GTTTTTTGGAGG-TGTTTTTTT
1 GTTTTTTGGAGGAGGTTTTTTT
*
4616646 GTTTTTTTGGAAAGAAGGTTGTTTTT
1 G-TTTTTTGG--AGGAGGTT-TTTTT
*
4616672 GTTTCTTGGA
1 GTTTTTTGGA
4616682 AAGGCTAGTT
Statistics
Matches: 66, Mismatches: 4, Indels: 15
0.78 0.05 0.18
Matches are distributed among these distances:
20 6 0.09
21 11 0.17
22 29 0.44
23 1 0.02
24 3 0.05
25 10 0.15
26 6 0.09
ACGTcount: A:0.12, C:0.01, G:0.31, T:0.56
Consensus pattern (22 bp):
GTTTTTTGGAGGAGGTTTTTTT
Found at i:4617001 original size:3 final size:3
Alignment explanation
Indices: 4616987--4617069 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
4616977 GAGCTTTGTT
* *
4616987 TTA TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
4617031 TT- TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA -TA TTA T
1 TTA T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA T
4617070 ATATGCCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Done.