Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 121 of 335
Found at i:36697770 original size:26 final size:26
Alignment explanation
Indices: 36697702--36697761 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
36697692 AGTTATATTG
*
36697702 GGAAGCTC-CAGAGAGCCATTAATCA
1 GGAAGCTCACAAAGAGCCATTAATCA
* *
36697727 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAGCCATTAATCA
36697753 GGAAGCTCA
1 GGAAGCTCA
36697762 TGAAAAGCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
25 8 0.26
26 23 0.74
ACGTcount: A:0.35, C:0.23, G:0.25, T:0.17
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCATTAATCA
Found at i:36706852 original size:19 final size:18
Alignment explanation
Indices: 36706830--36706937 Score: 80
Period size: 20 Copynumber: 5.8 Consensus size: 18
36706820 TGTTTTATAT
36706830 ATTTTTTAGAATTTTTAAA
1 ATTTTTT-GAATTTTTAAA
* ** *
36706849 ATTTTTTAAAAATAT-AA
1 ATTTTTTGAATTTTTAAA
36706866 A--TTTTGAATTTTTTATAA
1 ATTTTTTGAA-TTTTTA-AA
*
36706884 ATATTTTGAA-TTTTAAA
1 ATTTTTTGAATTTTTAAA
36706901 ATCTATTTTGAATTTTTAAA
1 AT-T-TTTTGAATTTTTAAA
36706921 ACTTATTTTGAATTTTT
1 A-TT-TTTTGAATTTTT
36706938 TTTATAATTA
Statistics
Matches: 71, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.08
16 2 0.03
17 7 0.10
18 12 0.17
19 14 0.20
20 29 0.41
21 1 0.01
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.56
Consensus pattern (18 bp):
ATTTTTTGAATTTTTAAA
Found at i:36706891 original size:20 final size:19
Alignment explanation
Indices: 36706866--36706937 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
36706856 AAAAATATAA
36706866 ATTTTGAATTTTTTATAAA-T
1 ATTTTGAA-TTTTTA-AAACT
36706886 ATTTTGAA-TTTTAAAATCT
1 ATTTTGAATTTTTAAAA-CT
36706905 ATTTTGAATTTTTAAAACTT
1 ATTTTGAATTTTTAAAAC-T
36706925 ATTTTGAATTTTT
1 ATTTTGAATTTTT
36706938 TTTATAATTA
Statistics
Matches: 48, Mismatches: 0, Indels: 8
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.06
18 5 0.10
19 10 0.21
20 30 0.62
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.58
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAACT
Found at i:36708978 original size:51 final size:51
Alignment explanation
Indices: 36708894--36709002 Score: 157
Period size: 51 Copynumber: 2.1 Consensus size: 51
36708884 AATAGAAAGG
* * *
36708894 ATGAAAATGGAGAAATGAGAAACATTTGGAATGATTATGGTTTTCTCCAAA
1 ATGAAAATAGAGAAATGAGAAACATTTGAAATGAATATGGTTTTCTCCAAA
* *
36708945 ATGAAAATAGAGAAATGA-AATCATTTGAAAATGAATGTGGTTTTCTCCAAA
1 ATGAAAATAGAGAAATGAGAAACATTTG-AAATGAATATGGTTTTCTCCAAA
36708996 ATGAAAA
1 ATGAAAA
36709003 ATAAAAATGA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
50 8 0.15
51 44 0.85
ACGTcount: A:0.45, C:0.07, G:0.19, T:0.28
Consensus pattern (51 bp):
ATGAAAATAGAGAAATGAGAAACATTTGAAATGAATATGGTTTTCTCCAAA
Found at i:36711675 original size:22 final size:23
Alignment explanation
Indices: 36711645--36711688 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
36711635 TTTGATGTTA
36711645 AAAAAATAAGA-AAAAA-AAGTTT
1 AAAAAATAA-ATAAAAAGAAGTTT
*
36711667 AAAATATAAATAAAAAGAAGTT
1 AAAAAATAAATAAAAAGAAGTT
36711689 AGAAAGGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 13 0.68
23 5 0.26
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.20
Consensus pattern (23 bp):
AAAAAATAAATAAAAAGAAGTTT
Found at i:36714952 original size:15 final size:15
Alignment explanation
Indices: 36714919--36714957 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
36714909 AATTGGAAAC
*
36714919 GAAATAAAATTAAAG
1 GAAATAAAATTAAAA
36714934 GAAA-AAAATTAAAAA
1 GAAATAAAATT-AAAA
36714949 GAAATAAAA
1 GAAATAAAA
36714958 CAGGATTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 11 0.52
16 4 0.19
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.15
Consensus pattern (15 bp):
GAAATAAAATTAAAA
Found at i:36716453 original size:44 final size:45
Alignment explanation
Indices: 36716345--36716469 Score: 144
Period size: 44 Copynumber: 2.8 Consensus size: 45
36716335 GGCCTATTAT
* * * * * *
36716345 CTTCAATCTGCTCCACTGTAACTTTAGGGAGATGAGATTTGTTGT
1 CTTCAATCTGCTCCACTGCAATTTTAAGGAGATAAGACTTGTTGA
* * *
36716390 CTTTAGTCTGCTCCGCTGCAATTTTAAGGAGATAAGACTTG-TGA
1 CTTCAATCTGCTCCACTGCAATTTTAAGGAGATAAGACTTGTTGA
* *
36716434 CTTCAACCTGCTCCACTGCAATTTCAAGGAGATAAG
1 CTTCAATCTGCTCCACTGCAATTTTAAGGAGATAAG
36716470 GTTTGTGATT
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
44 33 0.50
45 33 0.50
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAATTTTAAGGAGATAAGACTTGTTGA
Found at i:36716649 original size:119 final size:119
Alignment explanation
Indices: 36716433--36716666 Score: 371
Period size: 119 Copynumber: 2.0 Consensus size: 119
36716423 AAGACTTGTG
** * *
36716433 ACTTCAACCTGCTCCACTGCAATTTCAAGGAGATAAGGTTTGTGATTTCTACCTTCAATCTACTC
1 ACTTCAACCCACTCCACTGCAATTTCAAGGAGACAAGGTTTGTCATTTCTACCTTCAATCTACTC
*
36716498 CACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTGCTCTATTGTAAC
66 CACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTACTCTATTGTAAC
* * *
36716552 ACTTCAACCCACTCCACTGCAACTTT-AGGGAGACAAGGTTTGTCATTTGTAGCTTCAATCTACT
1 ACTTCAACCCACTCCACTGCAA-TTTCAAGGAGACAAGGTTTGTCATTTCTACCTTCAATCTACT
*
36716616 CCACTGCAACTTCAGGGAGATAAGATTCTCTATCTTCAGTCTACTCTATTG
65 CCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTACTCTATTG
36716667 CAACTTCAGG
Statistics
Matches: 105, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
119 102 0.97
120 3 0.03
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (119 bp):
ACTTCAACCCACTCCACTGCAATTTCAAGGAGACAAGGTTTGTCATTTCTACCTTCAATCTACTC
CACTGCAACTTCAGGGAGATAAGATTCGCTATCTTCAGTCTACTCTATTGTAAC
Found at i:36716762 original size:44 final size:45
Alignment explanation
Indices: 36716614--36716773 Score: 214
Period size: 45 Copynumber: 3.6 Consensus size: 45
36716604 CTTCAATCTA
* *
36716614 CTCCACTGCAACTTCAGGGAGATAAGATTCTCTATCTTCAGTCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTCTCTATCTTTAGTCTG
* * *
36716659 CTCTATTGCAACTTCAGGGAGATAAGATTCTCTATCTTTAGTGTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCTCTATCTTTAGTCTG
* * * * **
36716704 CTCCACTGCTACTTCAGGGAGATAAGACT-TGTAACTTTAACCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTCTCTATCTTTAGTCTG
36716748 CTCCACTGCAACTTCAGGGAGATAAG
1 CTCCACTGCAACTTCAGGGAGATAAG
36716774 GTTTGTGATT
Statistics
Matches: 100, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
44 35 0.35
45 65 0.65
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTCTCTATCTTTAGTCTG
Found at i:36725013 original size:19 final size:20
Alignment explanation
Indices: 36724991--36725044 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
36724981 GGTGTTTTCG
* *
36724991 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAAATGAA
*
36725010 TGAAATGTAATGTAAATGAA
1 TGAAATGTAATGCAAATGAA
36725030 TGAAATG-AATGCAAA
1 TGAAATGTAATGCAAA
36725045 AAGAGGCATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 22 0.73
20 8 0.27
ACGTcount: A:0.48, C:0.04, G:0.19, T:0.30
Consensus pattern (20 bp):
TGAAATGTAATGCAAATGAA
Found at i:36729008 original size:25 final size:25
Alignment explanation
Indices: 36728980--36729028 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
36728970 ACCTAATAGG
*
36728980 TGAAA-AACTTAAAAATAAGTAATAA
1 TGAAACAA-TTAAAAATAAATAATAA
*
36729005 TGAAACAATTTAAAATAAATAATA
1 TGAAACAATTAAAAATAAATAATA
36729029 TGAGGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.63, C:0.04, G:0.06, T:0.27
Consensus pattern (25 bp):
TGAAACAATTAAAAATAAATAATAA
Found at i:36736178 original size:20 final size:20
Alignment explanation
Indices: 36736150--36736192 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
36736140 TAAGAAAATG
* *
36736150 AAAATAAATAAAATTATCAT
1 AAAACAAATAAAATCATCAT
*
36736170 AAAACAAATAATATCATCAT
1 AAAACAAATAAAATCATCAT
36736190 AAA
1 AAA
36736193 TATAAAAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAACAAATAAAATCATCAT
Found at i:36738982 original size:17 final size:18
Alignment explanation
Indices: 36738932--36738990 Score: 86
Period size: 17 Copynumber: 3.3 Consensus size: 18
36738922 AATATTTAAG
36738932 GATATGCAATCTTAGATAT
1 GATAT-CAATCTTAGATAT
36738951 GATATGCAA-CTTAGATAT
1 GATAT-CAATCTTAGATAT
36738969 GATAT-AATCTTAGATAT
1 GATATCAATCTTAGATAT
36738986 GATAT
1 GATAT
36738991 GATATGATAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
16 2 0.05
17 14 0.36
18 14 0.36
19 9 0.23
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.37
Consensus pattern (18 bp):
GATATCAATCTTAGATAT
Found at i:36745773 original size:1 final size:1
Alignment explanation
Indices: 36745767--36745833 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
36745757 CTTCTATTTC
* * * * * * * * *
36745767 AAAAAAAAAAAGAAAAAAGAAAAGAAAGAAAATAAAAAAATAAAAAAAAAAAGAGAAAAAAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
36745832 AA
1 AA
36745834 TGGAGAGGCC
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (1 bp):
A
Found at i:36745817 original size:34 final size:33
Alignment explanation
Indices: 36745767--36745832 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 33
36745757 CTTCTATTTC
*
36745767 AAAAAAAAAAAGAAAAAAGA-AAAGAAAGAAAAT
1 AAAAAAAAAAAAAAAAAAGAGAAA-AAAGAAAAT
36745800 AAAAAAATAAAAAAAAAAAGAGAAAAAAGAAAA
1 AAAAAAA-AAAAAAAAAAAGAGAAAAAAGAAAA
36745833 ATGGAGAGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 7 0.23
34 20 0.67
35 3 0.10
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (33 bp):
AAAAAAAAAAAAAAAAAAGAGAAAAAAGAAAAT
Found at i:36745839 original size:17 final size:14
Alignment explanation
Indices: 36745767--36745833 Score: 68
Period size: 13 Copynumber: 4.8 Consensus size: 14
36745757 CTTCTATTTC
36745767 AAAAAAAAAAAGA-
1 AAAAAAAAAAAGAG
36745780 AAAAAGAAAAGAA-AG
1 AAAAA-AAAA-AAGAG
* *
36745795 AAAATAAAAAA-AT
1 AAAAAAAAAAAGAG
36745808 AAAAAAAAAAAGAG
1 AAAAAAAAAAAGAG
36745822 AAAAAAGAAAAA
1 AAAAAA-AAAAA
36745834 TGGAGAGGCC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
13 18 0.40
14 16 0.36
15 11 0.24
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAAAGAG
Found at i:36746851 original size:44 final size:44
Alignment explanation
Indices: 36746710--36747162 Score: 326
Period size: 44 Copynumber: 10.4 Consensus size: 44
36746700 CAAAAAAATA
**
36746710 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAT
* * * * * * *
36746754 AGATCTGACATTCCTGTGCTTACAGCGAAGCAGATCGAAGAT-TT
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAAT
* *
36746798 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGT
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAAT
*
36746841 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAT
* * * * * * * *
36746885 AGATCTGACATTCCTGTGCTTACAGTGAAGCAGAT-GAGGAT-TT
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAAT
* *
36746928 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAAC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAAT
*
36746971 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAT
* * * ** * * *
36747015 AGATTTGACA-CTCCTGTGCTTACAACGAAGTAGATCGAGGAT-TT
1 AGATTTGGCATC-CCTGTGTTTATAGGGAA-CAGATCGAAGATAAT
** * *
36747059 CA-ACATGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGT
1 -AGATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAAT
* * **
36747103 AGATTTGGCATCTCTGTATTGT-TA--GAAGCAGATCGAAGATACC
1 AGATTTGGCATCCCTGTGTT-TATAGGGAA-CAGATCGAAGATAAT
*
36747146 AGATTTGGCATCTCTGT
1 AGATTTGGCATCCCTGT
36747163 ATTGGCGGAG
Statistics
Matches: 321, Mismatches: 63, Indels: 51
0.74 0.14 0.12
Matches are distributed among these distances:
40 1 0.00
41 4 0.01
42 39 0.12
43 62 0.19
44 182 0.57
45 33 0.10
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAAT
Found at i:36747001 original size:130 final size:131
Alignment explanation
Indices: 36746710--36747149 Score: 708
Period size: 130 Copynumber: 3.4 Consensus size: 131
36746700 CAAAAAAATA
*
36746710 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGCTT
*
36746775 ACAGCGAAGCAGATCGAAGATTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAG
66 ACAGCGAAGCAGATCGAGGATTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAG
36746840 T
131 T
36746841 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGCTT
* *
36746906 ACAGTGAAGCAGAT-GAGGATTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAA
66 ACAGCGAAGCAGATCGAGGATTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAG
*
36746970 C
131 T
* *
36746971 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATTTGACACTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGCTT
* * *
36747036 ACAACGAAGTAGATCGAGGATTTCAACATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
66 ACAGCGAAGCAGATCGAGGATTT-AGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
36747101 GT
130 GT
* * *
36747103 AGATTTGGCATCTCTGTATTGT-TA--GAAGCAGATCGAAGATACCAGAT
1 AGATTTGGCATCCCTGTGTT-TATAGGGAA-CAGATCGAAGATAACAGAT
36747150 TTGGCATCTC
Statistics
Matches: 289, Mismatches: 16, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
130 125 0.43
131 103 0.36
132 60 0.21
133 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (131 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAACAGATCTGACATTCCTGTGCTT
ACAGCGAAGCAGATCGAGGATTTAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAG
T
Found at i:36747155 original size:43 final size:44
Alignment explanation
Indices: 36747094--36747185 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 44
36747084 GGAACAAGTT
** **
36747094 GAAGATAGTAGATTTGGCATCTCTGTATTGTTAGA-AGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
*
36747137 GAAGATACCAGATTTGGCATCTCTGTATTGGCGGAGAGCAGATC
1 GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
36747181 GAAGA
1 GAAGA
36747186 CACATAGCTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 30 0.70
44 13 0.30
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.27
Consensus pattern (44 bp):
GAAGATACCAGATTTGGCATCTCTGTATTGGCAGAGAGCAGATC
Found at i:36747685 original size:204 final size:205
Alignment explanation
Indices: 36747172--36747877 Score: 1213
Period size: 204 Copynumber: 3.5 Consensus size: 205
36747162 TATTGGCGGA
* *
36747172 GAGCAGATCGAAGACACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATG
1 GAGCAAATCGAAG--ACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATG
*
36747237 ATTTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCA
64 ATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCA
*
36747302 GACACATAGCAAATCCAACCTTCAGATGTTTAT--TGAAGTAGATCCAAGATGGTTTGGCATCCT
129 GACACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCT
36747365 TG-GCTTACAAG
194 TGTGCTTACAAG
* * *
36747376 GAGCAAATCGAAGATATAGCTGATTTGGCTTTCACGTGCTTACATTGAAACAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
* * *
36747441 TTGGCATCACTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTTGACGGAGGGCTGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
*
36747506 CACATAGCAGATCCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
36747571 TGCTTACAAG
196 TGCTTACAAG
*
36747581 GAGCAAATCGAATACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
36747646 TTGGCAT-TCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
*
36747710 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
36747775 TGCTTACAAG
196 TGCTTACAAG
* *
36747785 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTATGTTAAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
* *
36747850 TTGGCATCTCTGTATTGTTAGGGAACAA
66 TTGGCATCTCTGTATTGTCAGAGAACAA
36747878 TGAAGAAGCA
Statistics
Matches: 473, Mismatches: 25, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
202 138 0.29
204 240 0.51
205 95 0.20
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGTTGAAGCAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTGGCATCTCCACTTCGACGGAGGGCAGA
CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTG
TGCTTACAAG
Found at i:36748039 original size:44 final size:44
Alignment explanation
Indices: 36747956--36748065 Score: 161
Period size: 44 Copynumber: 2.5 Consensus size: 44
36747946 GAGTTTGCAA
* *
36747956 GGAGCAGATTGAAGA-AGCAAATTTAGCGTCTCTGTATTAGACG
1 GGAGCAGATCGAAGATAGCAGATTTAGCGTCTCTGTATTAGACG
*
36747999 GGAGCAGATCGAAGATAACAGATTT-GACGTCTCTGTATTAGACG
1 GGAGCAGATCGAAGATAGCAGATTTAG-CGTCTCTGTATTAGACG
*
36748043 GGAGCAGATCAAAGATAGCAGAT
1 GGAGCAGATCGAAGATAGCAGAT
36748066 ATCGCCTTCC
Statistics
Matches: 60, Mismatches: 5, Indels: 3
0.88 0.07 0.04
Matches are distributed among these distances:
43 15 0.25
44 45 0.75
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.23
Consensus pattern (44 bp):
GGAGCAGATCGAAGATAGCAGATTTAGCGTCTCTGTATTAGACG
Found at i:36748449 original size:20 final size:20
Alignment explanation
Indices: 36748424--36748480 Score: 93
Period size: 20 Copynumber: 3.0 Consensus size: 20
36748414 CTTTAAGGAT
36748424 ATGCAATCTTAGATATGATA
1 ATGCAATCTTAGATATGATA
36748444 ATGCAATCTTAGATATGAT-
1 ATGCAATCTTAGATATGATA
36748463 AT--AATCTTAGATATGATA
1 ATGCAATCTTAGATATGATA
36748481 TGATATGATA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.42
19 2 0.06
20 19 0.53
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGCAATCTTAGATATGATA
Found at i:36751599 original size:28 final size:27
Alignment explanation
Indices: 36751533--36751602 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
36751523 ATAGTGAGTC
* *
36751533 CGCACACTTAGTGATATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAACT
* * *
36751560 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AACT
36751588 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36751603 GTACAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAACT
Found at i:36758804 original size:28 final size:27
Alignment explanation
Indices: 36758738--36758807 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
36758728 ATAGTGAGTC
* *
36758738 CGCACACTTAGTGATATAAAATCAGCT
1 CGCACACTTAGTGCTATAAAATCAACT
* * *
36758765 CGCACACATAGTGCTATATAATCAAATT
1 CGCACACTTAGTGCTATAAAATC-AACT
36758793 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36758808 GTACAAATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAACT
Found at i:36758880 original size:42 final size:42
Alignment explanation
Indices: 36758816--36758922 Score: 205
Period size: 42 Copynumber: 2.5 Consensus size: 42
36758806 CTGTACAAAT
*
36758816 TTTAAACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
36758858 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
1 TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
36758900 TTTATACCCGCACACTTAGTGCC
1 TTTATACCCGCACACTTAGTGCC
36758923 GAAATCAACA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.22, C:0.34, G:0.14, T:0.30
Consensus pattern (42 bp):
TTTATACCCGCACACTTAGTGCCAATCTTGTCACCGTGTCCA
Found at i:36761211 original size:62 final size:62
Alignment explanation
Indices: 36761145--36761377 Score: 277
Period size: 62 Copynumber: 3.8 Consensus size: 62
36761135 TAAGCACAAG
* * * * * *
36761145 CAGTGAGTCATACGGCCTAGGCACATGCTCGTGTCATTGGCCGTGTGGTTTTATACTATGAA
1 CAGTGAGTTACACGGCCTGGGCACAAGCTCGTGTCCTTGGCCGTGTGGTTTTATACAATGAA
* * * * * *
36761207 CAGTGAGTTACACGGCTTGGGCACAAGCCCATGTCCCTGGTCGTGTGGTTTTATTCAATGAA
1 CAGTGAGTTACACGGCCTGGGCACAAGCTCGTGTCCTTGGCCGTGTGGTTTTATACAATGAA
* * *
36761269 CAGTGAGTTACACAGCCTGGGCACACGCTCGTGTCCTTGGCTGTGTGGTTTTATACAATGAA
1 CAGTGAGTTACACGGCCTGGGCACAAGCTCGTGTCCTTGGCCGTGTGGTTTTATACAATGAA
* * * * * *
36761331 CAGTGAGTTTCAAGGCCCGGGCACACGCCCGTGTCCTTGGTCGTGTG
1 CAGTGAGTTACACGGCCTGGGCACAAGCTCGTGTCCTTGGCCGTGTG
36761378 AACCCTGCAG
Statistics
Matches: 143, Mismatches: 28, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
62 143 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (62 bp):
CAGTGAGTTACACGGCCTGGGCACAAGCTCGTGTCCTTGGCCGTGTGGTTTTATACAATGAA
Found at i:36761315 original size:124 final size:124
Alignment explanation
Indices: 36761145--36761377 Score: 331
Period size: 124 Copynumber: 1.9 Consensus size: 124
36761135 TAAGCACAAG
* * * *
36761145 CAGTGAGTCATACGGCCTAGGCACATGCTCGTGTCATTGGCCGTGTGGTTTTATACTATGAACAG
1 CAGTGAGTCACACAGCCTAGGCACACGCTCGTGTCATTGGCCGTGTGGTTTTATACAATGAACAG
* **
36761210 TGAGTTACACGGCTTGGGCACAAGCCCATGTCCCTGGTCGTGTGGTTTTATTCAATGAA
66 TGAGTTACAAGGCCCGGGCACAAGCCCATGTCCCTGGTCGTGTGGTTTTATTCAATGAA
* * * *
36761269 CAGTGAGTTACACAGCCTGGGCACACGCTCGTGTCCTTGGCTGTGTGGTTTTATACAATGAACAG
1 CAGTGAGTCACACAGCCTAGGCACACGCTCGTGTCATTGGCCGTGTGGTTTTATACAATGAACAG
* * * *
36761334 TGAGTTTCAAGGCCCGGGCACACGCCCGTGTCCTTGGTCGTGTG
66 TGAGTTACAAGGCCCGGGCACAAGCCCATGTCCCTGGTCGTGTG
36761378 AACCCTGCAG
Statistics
Matches: 94, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
124 94 1.00
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.28
Consensus pattern (124 bp):
CAGTGAGTCACACAGCCTAGGCACACGCTCGTGTCATTGGCCGTGTGGTTTTATACAATGAACAG
TGAGTTACAAGGCCCGGGCACAAGCCCATGTCCCTGGTCGTGTGGTTTTATTCAATGAA
Found at i:36765251 original size:6 final size:7
Alignment explanation
Indices: 36765236--36765264 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
36765226 GCCTTAAACT
36765236 AAAATAA
1 AAAATAA
36765243 AAAATAA
1 AAAATAA
36765250 AAAAT-A
1 AAAATAA
36765256 AAAATAA
1 AAAATAA
36765263 AA
1 AA
36765265 CAAAGTCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.29
7 15 0.71
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAATAA
Found at i:36765258 original size:13 final size:14
Alignment explanation
Indices: 36765236--36765264 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
36765226 GCCTTAAACT
36765236 AAAATAAAAAATAA
1 AAAATAAAAAATAA
36765250 AAAAT-AAAAATAA
1 AAAATAAAAAATAA
36765263 AA
1 AA
36765265 CAAAGTCCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAATAAAAAATAA
Found at i:36765434 original size:36 final size:37
Alignment explanation
Indices: 36765387--36765473 Score: 140
Period size: 36 Copynumber: 2.3 Consensus size: 37
36765377 AATCTTTAAG
*
36765387 GATATGCAATCTTAGATATGATATGCAATTTTAGATAT
1 GATA-GCAATCTTAGATATGATATGCAATCTTAGATAT
36765425 GATA-CAATCTTAGATATGATATGCAATCTTAGATAT
1 GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
36765461 GATATGCAATCTT
1 GATA-GCAATCTT
36765474 GAATATATGA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
36 35 0.76
38 11 0.24
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (37 bp):
GATAGCAATCTTAGATATGATATGCAATCTTAGATAT
Found at i:36765479 original size:19 final size:19
Alignment explanation
Indices: 36765387--36765473 Score: 151
Period size: 19 Copynumber: 4.7 Consensus size: 19
36765377 AATCTTTAAG
36765387 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36765406 GATATGCAATTTTAGATAT
1 GATATGCAATCTTAGATAT
36765425 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36765442 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36765461 GATATGCAATCTT
1 GATATGCAATCTT
36765474 GAATATATGA
Statistics
Matches: 64, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
17 16 0.25
19 48 0.75
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36771292 original size:12 final size:12
Alignment explanation
Indices: 36771275--36771308 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
36771265 AAAAAAAAGG
36771275 AAAAGAGAAAAA
1 AAAAGAGAAAAA
36771287 AAAAGAGAAAAA
1 AAAAGAGAAAAA
36771299 AAAAGA-AAAA
1 AAAAGAGAAAA
36771309 TGAGAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAGAGAAAAA
Found at i:36771296 original size:19 final size:18
Alignment explanation
Indices: 36771264--36771325 Score: 74
Period size: 18 Copynumber: 3.3 Consensus size: 18
36771254 CTTCTATTTC
36771264 AAAAAAAAAG-GAAAAGAG
1 AAAAAAAAAGAGAAAA-AG
36771282 AAAAAAAAAGAGAAAAA-
1 AAAAAAAAAGAGAAAAAG
36771299 AAAAGAAAAATGAGAAAAATG
1 AAAA-AAAAA-GAGAAAAA-G
36771320 AAAAAA
1 AAAAAA
36771326 GAAAAATGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
17 4 0.10
18 16 0.41
19 13 0.33
20 2 0.05
21 4 0.10
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAGAGAAAAAG
Found at i:36771302 original size:31 final size:32
Alignment explanation
Indices: 36771264--36771331 Score: 95
Period size: 30 Copynumber: 2.2 Consensus size: 32
36771254 CTTCTATTTC
* *
36771264 AAAAAAAAAGGAAAA-GAGAAAAA-AAAAGAG
1 AAAAAAAAAGAAAAATGAGAAAAAGAAAAAAG
36771294 AAAAAAAAAGAAAAATGAGAAAAATGAAAAAAG
1 AAAAAAAAAGAAAAATGAGAAAAA-GAAAAAAG
36771327 AAAAA
1 AAAAA
36771332 TGGAGAGGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
30 14 0.42
31 8 0.24
33 11 0.33
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (32 bp):
AAAAAAAAAGAAAAATGAGAAAAAGAAAAAAG
Found at i:36772342 original size:43 final size:42
Alignment explanation
Indices: 36772287--36772928 Score: 221
Period size: 43 Copynumber: 15.3 Consensus size: 42
36772277 TGCCTTAATC
* *
36772287 CCCTAAACAGTAGGGTAATAGGTTAAATTTGCATATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
* * * ** *
36772330 CCCTAAGTAGTAGTGG-AACAGATCGAAGACTCGGC--T-TAATCT
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-A-TTTGCAATCTTATCT
36772372 -CCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
* * * * *
36772414 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-CACT-TTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAATCTT-ATCT
* * *
36772455 CCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGACCATATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
* ** * * * * *
36772498 CCTTAAGCAGTAGTGG-AGTAGATCGAAGACTCGC---CTAAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAATCT-TATCT
*
36772539 CCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
* * * * *
36772582 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACTCGC---CTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAATCTT-ATCT
36772623 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
* * * * *
36772666 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACTCGC---CTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAATCTT-ATCT
*
36772707 CCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
** * * * *
36772750 CCCTAAGCAGTAGTGG-AGTAGATCGAAGACTCGC---CTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAATCTT-ATCT
36772791 CCCTAAGCAGTAGGGTAACAGG-----TTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
* * * * * *
36772829 CCCTAAGCAATAGCAG-AGCAGATCGACGACGACTTGC---CTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TA--A--ATTTGCAATCTT-ATCT
36772873 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCATATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCA-ATCTTATCT
36772916 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
36772929 TGGAGCAGAT
Statistics
Matches: 432, Mismatches: 89, Indels: 156
0.64 0.13 0.23
Matches are distributed among these distances:
34 3 0.01
37 3 0.01
38 22 0.05
39 20 0.05
40 23 0.05
41 118 0.27
42 41 0.09
43 129 0.30
44 45 0.10
45 21 0.05
46 3 0.01
48 4 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAATCTTATCT
Found at i:36772426 original size:84 final size:84
Alignment explanation
Indices: 36772278--36773057 Score: 1160
Period size: 84 Copynumber: 9.3 Consensus size: 84
36772268 AAAATTCAAT
* * * *
36772278 GCCTTAATCCCCTAAACAGTAGGGTAATAGGTTAAATTTGCATATCTTATCTCCCTAAGTAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
36772343 TGGAACAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
36772362 GGCTTAATCTCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
36772427 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * * * * *
36772446 ACTTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGACCATATCTCCTTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
36772511 TGGAGTAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
36772530 GCCTAAATCCCTTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
36772595 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
36772614 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
36772679 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
*
36772698 GCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
36772763 TGGAGTAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
*
36772782 GCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTTGCAGATCTTATCTCCCTAAGCAATAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
** *
36772842 CAGAGCAGATCGACGACGACTT
66 TGGAGCAGATCGA--A-GACTC
*
36772864 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCATATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
36772929 TGGAGCAGATCGAAGACCC
66 TGGAGCAGATCGAAGACTC
* * * * *
36772948 ACATTAATCCTCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGCAGGAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
36773011 CGGAGCAGATTGAAGACGATGC
66 TGGAGCAGATCGAAGAC--T-C
* *
36773033 ACCTTAACCCCCTAAGCAGTAGGGT
1 GCCTTAATCCCCTAAGCAGTAGGGT
36773058 CCAAGATGAT
Statistics
Matches: 631, Mismatches: 54, Indels: 21
0.89 0.08 0.03
Matches are distributed among these distances:
79 38 0.06
81 1 0.00
82 63 0.10
84 468 0.74
85 23 0.04
87 38 0.06
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (84 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTC
Found at i:36773004 original size:41 final size:41
Alignment explanation
Indices: 36772873--36773007 Score: 112
Period size: 41 Copynumber: 3.2 Consensus size: 41
36772863 TGCCTTAATC
*
36772873 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCATATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCACATCTTA--T
* * ** **** *
36772916 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACCCACAT-TAAT
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGCACATCTTAT
* *
36772956 CCTCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTAT
1 CC-CTAAGCAGTAGGGTAACAGGTTAAATTTGCACATCTTAT
36772998 CCCTAAGCAG
1 CCCTAAGCAG
36773008 GAGCGGAGCA
Statistics
Matches: 66, Mismatches: 22, Indels: 10
0.67 0.22 0.10
Matches are distributed among these distances:
40 5 0.08
41 28 0.42
42 7 0.11
43 24 0.36
44 2 0.03
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.27
Consensus pattern (41 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCACATCTTAT
Found at i:36773814 original size:36 final size:38
Alignment explanation
Indices: 36773773--36773847 Score: 109
Period size: 36 Copynumber: 2.0 Consensus size: 38
36773763 TCTTTAAGGA
*
36773773 TATGCAATCTTAGATATGATA-CAATCTT-AGATATGG
1 TATGCAATCTTAGATAGGATAGCAATCTTAAGATATGG
36773809 TATGCAATCTTAGATAGGATATGCAATCTTGAAGATATG
1 TATGCAATCTTAGATAGGATA-GCAATCTT-AAGATATG
36773848 ATATTGTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
36 20 0.59
38 7 0.21
40 7 0.21
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.35
Consensus pattern (38 bp):
TATGCAATCTTAGATAGGATAGCAATCTTAAGATATGG
Found at i:36773818 original size:19 final size:19
Alignment explanation
Indices: 36773773--36773838 Score: 93
Period size: 19 Copynumber: 3.6 Consensus size: 19
36773763 TCTTTAAGGA
36773773 TATGCAATCTTAGATAT-G
1 TATGCAATCTTAGATATGG
*
36773791 -ATACAATCTTAGATATGG
1 TATGCAATCTTAGATATGG
36773809 TATGCAATCTTAGATA-GG
1 TATGCAATCTTAGATATGG
36773827 ATATGCAATCTT
1 -TATGCAATCTT
36773839 GAAGATATGA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
17 15 0.35
18 3 0.07
19 25 0.58
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (19 bp):
TATGCAATCTTAGATATGG
Found at i:36773861 original size:22 final size:21
Alignment explanation
Indices: 36773769--36773866 Score: 79
Period size: 19 Copynumber: 5.0 Consensus size: 21
36773759 ATAATCTTTA
36773769 AGGATATGCAATCTT--AGAT
1 AGGATATGCAATCTTGAAGAT
*
36773788 ATGATA--CAATCTT--AGAT
1 AGGATATGCAATCTTGAAGAT
36773805 ATGG-TATGCAATCTT--AGAT
1 A-GGATATGCAATCTTGAAGAT
36773824 AGGATATGCAATCTTGAAGAT
1 AGGATATGCAATCTTGAAGAT
* * *
36773845 ATGATATTGTAATCTTGGAGAT
1 AGGATA-TGCAATCTTGAAGAT
36773867 TTAATTTGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
17 14 0.21
18 3 0.04
19 28 0.42
21 9 0.13
22 13 0.19
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (21 bp):
AGGATATGCAATCTTGAAGAT
Found at i:36783011 original size:10 final size:10
Alignment explanation
Indices: 36782984--36783028 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
36782974 ATTTATAAAT
36782984 ATTATAA-AA
1 ATTATAATAA
36782993 A-TATAAATAA
1 ATTAT-AATAA
*
36783003 ATTCTAATAA
1 ATTATAATAA
36783013 ATTATAA-AA
1 ATTATAATAA
36783022 ATTATAA
1 ATTATAA
36783029 AATTAATAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 3 0.10
9 12 0.39
10 14 0.45
11 2 0.06
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (10 bp):
ATTATAATAA
Found at i:36783031 original size:17 final size:17
Alignment explanation
Indices: 36782944--36783039 Score: 61
Period size: 19 Copynumber: 5.3 Consensus size: 17
36782934 TATTCAATAT
36782944 TAAAAA-TACTAAAATTGA
1 TAAAAATTA-TAAAATT-A
* *
36782962 TGAAAAAGTA-AAATTTA
1 T-AAAAATTATAAAATTA
* *
36782979 TAAATATTATAAAAATA
1 TAAAAATTATAAAATTA
*
36782996 TAAATAAATTCTAATAAATTA
1 T-AA-AAATTAT-A-AAATTA
36783017 TAAAAATTATAAAATTAA
1 TAAAAATTATAAAATT-A
36783035 TAAAA
1 TAAAA
36783040 CATATTTAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
16 6 0.10
17 13 0.21
18 15 0.25
19 16 0.26
20 5 0.08
21 6 0.10
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.32
Consensus pattern (17 bp):
TAAAAATTATAAAATTA
Found at i:36783068 original size:9 final size:9
Alignment explanation
Indices: 36783017--36783145 Score: 55
Period size: 9 Copynumber: 13.7 Consensus size: 9
36783007 TAATAAATTA
36783017 TAAAAAT-T
1 TAAAAATAT
* *
36783025 ATAAAATTAA
1 -TAAAAATAT
36783035 TAAAACATAT
1 TAAAA-ATAT
* *
36783045 TTAAAACACT
1 TAAAAATA-T
*
36783055 T-AAAATGT
1 TAAAAATAT
36783063 TAAAAAATAT
1 T-AAAAATAT
*
36783073 AAAAAATCAT
1 TAAAAAT-AT
* *
36783083 AAAAAAATGT
1 -TAAAAATAT
*
36783093 TAAAAATGT
1 TAAAAATAT
36783102 TAAAAATAT
1 TAAAAATAT
*
36783111 TAAAATTGAT
1 TAAAAAT-AT
**
36783121 ATAAATTTAT
1 -TAAAAATAT
*
36783131 AAAAAATAT
1 TAAAAATAT
36783140 TAAAAA
1 TAAAAA
36783146 ATCATAAAAA
Statistics
Matches: 92, Mismatches: 19, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
8 2 0.02
9 56 0.61
10 21 0.23
11 13 0.14
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (9 bp):
TAAAAATAT
Found at i:36783089 original size:20 final size:19
Alignment explanation
Indices: 36783064--36783155 Score: 60
Period size: 20 Copynumber: 4.7 Consensus size: 19
36783054 TTAAAATGTT
36783064 AAAAAATATAAAAAATCATA
1 AAAAAATATAAAAAAT-ATA
* * *
36783084 AAAAAATGTTAAAAATGT-
1 AAAAAATATAAAAAATATA
* * *
36783102 TAAAAATATTAAAATTGATA
1 AAAAAATATAAAAAAT-ATA
* ** *
36783122 TAAATTTATAAAAAATATT
1 AAAAAATATAAAAAATATA
36783141 AAAAAATCATAAAAA
1 AAAAAAT-ATAAAAA
36783156 CTTGAACTGG
Statistics
Matches: 54, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
18 13 0.24
19 8 0.15
20 33 0.61
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.28
Consensus pattern (19 bp):
AAAAAATATAAAAAATATA
Found at i:36783153 original size:10 final size:9
Alignment explanation
Indices: 36783063--36783155 Score: 60
Period size: 9 Copynumber: 9.7 Consensus size: 9
36783053 CTTAAAATGT
36783063 TAAAAAATA
1 TAAAAAATA
36783072 TAAAAAATCA
1 TAAAAAAT-A
*
36783082 TAAAAAAATG
1 T-AAAAAATA
* *
36783092 TTAAAAATG
1 TAAAAAATA
*
36783101 TTAAAAATA
1 TAAAAAATA
* *
36783110 TTAAAATTGA
1 TAAAAAAT-A
**
36783120 TATAAATTTA
1 TA-AAAAATA
36783130 TAAAAAATA
1 TAAAAAATA
36783139 TTAAAAAATCA
1 -TAAAAAAT-A
36783150 TAAAAA
1 TAAAAA
36783156 CTTGAACTGG
Statistics
Matches: 70, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
9 35 0.50
10 22 0.31
11 13 0.19
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (9 bp):
TAAAAAATA
Found at i:36788775 original size:44 final size:44
Alignment explanation
Indices: 36788708--36788794 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
36788698 ACTCTATTTT
36788708 TAGTTTCCCACTTAAACATTGATTAGTGTAGGTTATTTTAATAC
1 TAGTTTCCCACTTAAACATTGATTAGTGTAGGTTATTTTAATAC
* * *
36788752 TAGTTTTCCACTTAAGC-TCTGATTAGTGTTGGTTATTTTAATA
1 TAGTTTCCCACTTAAACAT-TGATTAGTGTAGGTTATTTTAATA
36788795 TTATTTGACC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
43 1 0.03
44 38 0.97
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (44 bp):
TAGTTTCCCACTTAAACATTGATTAGTGTAGGTTATTTTAATAC
Found at i:36790175 original size:75 final size:75
Alignment explanation
Indices: 36790052--36790200 Score: 253
Period size: 75 Copynumber: 2.0 Consensus size: 75
36790042 ATATATTATA
* * *
36790052 TGCTCAAAATAGTTAAGTGATGACTGAGAAATTGATGCTCAAAGTAAGCTACTTGTGAATATTTG
1 TGCTCAAAATAGTTAAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
36790117 TTGAGGAAAG
66 TTGAGGAAAG
* *
36790127 TGCTCAAAATGGTTGAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
1 TGCTCAAAATAGTTAAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
36790192 TTGAGGAAA
66 TTGAGGAAA
36790201 AGAAAAACTT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 69 1.00
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.30
Consensus pattern (75 bp):
TGCTCAAAATAGTTAAGTGATGAATAAGAAATTGATGCTCAAAGTAAGCCACTTGTGAATATTTG
TTGAGGAAAG
Found at i:36790926 original size:12 final size:12
Alignment explanation
Indices: 36790911--36790936 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36790901 TAAACCGAGC
36790911 TGTAAATATTTA
1 TGTAAATATTTA
36790923 TGTAAATATTTA
1 TGTAAATATTTA
36790935 TG
1 TG
36790937 GAGTGTCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (12 bp):
TGTAAATATTTA
Found at i:36793428 original size:42 final size:42
Alignment explanation
Indices: 36793360--36793515 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
36793350 GATGGGAATG
* * * *
36793360 CGTGTAAGACCATATCTGGGATATGGCATCGGTATGATATTA
1 CGTGTAAGACCATATCTGGGACATGGCATCGATACGAAATTA
* * *
36793402 CGTGGAAGACCATGTCTGGGACATGGCATCGATACGAAATTT
1 CGTGTAAGACCATATCTGGGACATGGCATCGATACGAAATTA
* * * * *
36793444 CGTGTAAGACCATAGCTGGG-CTATTGGCGTTGATATGAGATTA
1 CGTGTAAGACCATATCTGGGAC-A-TGGCATCGATACGAAATTA
* * *
36793487 CATGTAAGACCATATCCGGGATATGGCAT
1 CGTGTAAGACCATATCTGGGACATGGCAT
36793516 TATACGACTT
Statistics
Matches: 91, Mismatches: 20, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 58 0.64
43 32 0.35
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGACATGGCATCGATACGAAATTA
Found at i:36793513 original size:85 final size:84
Alignment explanation
Indices: 36793360--36793515 Score: 204
Period size: 85 Copynumber: 1.8 Consensus size: 84
36793350 GATGGGAATG
* * * * * *
36793360 CGTGTAAGACCATATCTGGGATATGGCATCGGTATGATATTACGTGGAAGACCATGTCTGGGACA
1 CGTGTAAGACCATAGCTGGGATATGGCATCGATATGAGATTACATGGAAGACCATATCCGGGACA
36793425 TGGCATCGATACGAAATTT
66 TGGCATCGATACGAAATTT
* * * * *
36793444 CGTGTAAGACCATAGCTGGGCTATTGGCGTTGATATGAGATTACATGTAAGACCATATCCGGGAT
1 CGTGTAAGACCATAGCTGGGATA-TGGCATCGATATGAGATTACATGGAAGACCATATCCGGGAC
36793509 ATGGCAT
65 ATGGCAT
36793516 TATACGACTT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
84 21 0.35
85 39 0.65
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (84 bp):
CGTGTAAGACCATAGCTGGGATATGGCATCGATATGAGATTACATGGAAGACCATATCCGGGACA
TGGCATCGATACGAAATTT
Found at i:36797653 original size:20 final size:20
Alignment explanation
Indices: 36797617--36797654 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36797607 GGAAAATAAT
*
36797617 ATATATAATAAGTAATAACA
1 ATATATAATAAGAAATAACA
36797637 ATATATAATTAA-AAATAA
1 ATATATAA-TAAGAAATAA
36797655 TACTCATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (20 bp):
ATATATAATAAGAAATAACA
Found at i:36799418 original size:83 final size:83
Alignment explanation
Indices: 36799274--36800058 Score: 1041
Period size: 83 Copynumber: 9.2 Consensus size: 83
36799264 TTCGATTTGT
* * * *
36799274 AAGGATGTCAAATTATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
36799339 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
36799357 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGGACATTTGAAAGTCATATCTGCAACGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
36799422 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
36799440 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGGACATTTGAGAGTCATATCTGCAACATCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
36799505 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
36799523 AAGGATGCCAAACCATCCTGAATCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
36799588 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
36799606 AAGGGTGCCAATTCATCTTGAGTCTGTTTGAGAACGTTTGAGAGTCATATCTGCAACGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
*
36799671 TTTGTTCCTTGTCAGCAC
66 TTTGTTCCTTGTAAGCAC
* * *
36799689 AAGGATGCCAAATCATCCTGAGTCTGTTTGAGAACATTTGAGAGTCATATTTGCAACGTCCCCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
*
36799754 TTTGTTCCTTGTCAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
36799772 AAGGATGCCAAATCATCCTGAGTCTGTTTGAGAACATTTGAGAGTCATATATGCAACGTCCTCGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
* *
36799837 TTTGTTTCTTGTAAACAC
66 TTTGTTCCTTGTAAGCAC
* * * *
36799855 AAGAATGCCAAATCATCTTG-GATCTGAAGGTTAGATCTGCTATATTTGAGAACGTCTGAGAGTC
1 AAGGATGCCAAATCATCTTGAG-TCT----GTTTGA---G-AACATTTGAG-A-GTC----A-T-
* * *
36799919 AAATCTGCTATGTCCTCGATTTGTTCCTTGCAAGCAC
49 --ATCTGCAACGTCCTCGATTTGTTCCTTGTAAGCAC
*
36799956 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTTGA
1 AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
* * *
36800021 TTTGTTTCTTGTAAACAT
66 TTTGTTCCTTGTAAGCAC
* * *
36800039 AAGAATACCAGATCATCTTG
1 AAGGATGCCAAATCATCTTG
36800059 GATCTGCTTC
Statistics
Matches: 626, Mismatches: 56, Indels: 40
0.87 0.08 0.06
Matches are distributed among these distances:
82 1 0.00
83 533 0.85
86 1 0.00
87 6 0.01
90 1 0.00
91 11 0.02
92 2 0.00
93 11 0.02
94 1 0.00
97 6 0.01
98 1 0.00
101 51 0.08
102 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (83 bp):
AAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:36800025 original size:184 final size:184
Alignment explanation
Indices: 36799715--36800064 Score: 567
Period size: 184 Copynumber: 1.9 Consensus size: 184
36799705 CCTGAGTCTG
* * *
36799715 TTTGAGAACATTTGAGAGTCATATTTGCAACGTCCCCGATTTGTTCCTTGTCAGCACAAGGATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCCCGATTTGTTCCTTGTCAGCACAAGGATGC
36799780 CAAATCATCCTGAGTCTGTTTGAGAACATTTGAGAGTCATATATGCAACGTCCTCGATTTGTTTC
66 CAAATCATCCTGAGTCTGTTTGAGAACATTTGAGAGTCATATATGCAACGTCCTCGATTTGTTTC
*
36799845 TTGTAAACACAAGAATGCCAAATCATCTTGGATCTGAAGGTTAGATCTGCTATA
131 TTGTAAACACAAGAATACCAAATCATCTTGGATCTGAAGGTTAGATCTGCTATA
* * * *
36799899 TTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTG-CAAGCACAAGGATG
1 TTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCCCGATTTGTTCCTTGTC-AGCACAAGGATG
* * *
36799963 CCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTTGATTTGTTT
65 CCAAATCATCCTGAGTCTGTTTGAGAACATTTGAGAGTCATATATGCAACGTCCTCGATTTGTTT
* *
36800028 CTTGTAAACATAAGAATACCAGATCATCTTGGATCTG
130 CTTGTAAACACAAGAATACCAAATCATCTTGGATCTG
36800065 CTTCAGTATA
Statistics
Matches: 152, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
183 1 0.01
184 151 0.99
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (184 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCAACGTCCCCGATTTGTTCCTTGTCAGCACAAGGATGC
CAAATCATCCTGAGTCTGTTTGAGAACATTTGAGAGTCATATATGCAACGTCCTCGATTTGTTTC
TTGTAAACACAAGAATACCAAATCATCTTGGATCTGAAGGTTAGATCTGCTATA
Found at i:36823650 original size:13 final size:13
Alignment explanation
Indices: 36823632--36823670 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
36823622 TTTAAAGATG
36823632 ATGCGTGGAAAAT
1 ATGCGTGGAAAAT
36823645 ATGCGTGGAAAAT
1 ATGCGTGGAAAAT
36823658 ATGCGTGGAAAAT
1 ATGCGTGGAAAAT
36823671 CGTATTACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.31, T:0.23
Consensus pattern (13 bp):
ATGCGTGGAAAAT
Found at i:36824533 original size:20 final size:20
Alignment explanation
Indices: 36824497--36824534 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36824487 GGAAAATAAT
*
36824497 ATATATAATAAGTAATAACA
1 ATATATAATAAGAAATAACA
36824517 ATATATAATTAA-AAATAA
1 ATATATAA-TAAGAAATAA
36824535 TACTCATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (20 bp):
ATATATAATAAGAAATAACA
Found at i:36826368 original size:22 final size:22
Alignment explanation
Indices: 36826343--36826386 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
36826333 AGTGTGTTAC
36826343 ATAAATATTA-ATATATTTATAT
1 ATAAA-ATTAGATATATTTATAT
*
36826365 ATAAAATTAGTTATATTTATAT
1 ATAAAATTAGATATATTTATAT
36826387 TTGGTCGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
ATAAAATTAGATATATTTATAT
Found at i:36832199 original size:25 final size:25
Alignment explanation
Indices: 36832170--36832219 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
36832160 TTTATGTCTA
36832170 ATTGTTTTATCTATAGTAACTAATC
1 ATTGTTTTATCTATAGTAACTAATC
36832195 ATTGTTTTATCTATAGTAACTAATC
1 ATTGTTTTATCTATAGTAACTAATC
36832220 TGAAATAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (25 bp):
ATTGTTTTATCTATAGTAACTAATC
Found at i:36833017 original size:24 final size:24
Alignment explanation
Indices: 36832981--36833027 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
36832971 GTTCCGGAGA
*
36832981 TAGATACAAATGCAGATACAAATT
1 TAGATACAAATGCAGACACAAATT
** *
36833005 TAGATACCGATGCATACACAAAT
1 TAGATACAAATGCAGACACAAAT
36833028 GCGAATATAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.47, C:0.17, G:0.13, T:0.23
Consensus pattern (24 bp):
TAGATACAAATGCAGACACAAATT
Found at i:36834770 original size:40 final size:41
Alignment explanation
Indices: 36834702--36834923 Score: 321
Period size: 40 Copynumber: 5.6 Consensus size: 41
36834692 AACCCAAGTA
* * *
36834702 CCTTCGGGATTTAG-CCGGACATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
36834741 CCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
36834781 CCTTCGGGTCTTAGCCCAGATATAGTCAA-TAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
* *
36834821 CCTTCGGGACTTGGCCCAGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
36834861 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
36834901 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
36834924 CATTCGAATA
Statistics
Matches: 171, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 13 0.08
40 155 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (41 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAACTAGCACAAATG
Found at i:36837096 original size:46 final size:48
Alignment explanation
Indices: 36837044--36837226 Score: 122
Period size: 53 Copynumber: 3.6 Consensus size: 48
36837034 ATCACACACT
** * *
36837044 GAAGCCATAGCCTTGCCATGGTCTTACACGG-TTCACA-TATCATACC
1 GAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCATACC
* *
36837090 GAAGCCATATCCCAGACATGGTCTTATACGGAATCACATTATCATATTATACC
1 GAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATC-----ATACC
* * * *
36837143 GATGCCATAGCCCAG-CTATGGTTTTATACGGAGTCACATTATCACATTGCACC
1 GAAGCCATAGCCCAGAC-ATGGTCTTACACGGAATCACATTAT--CA-T--ACC
* *
36837196 GATGCCATAGCCCAG-CTATGGTCTTAAACGG
1 GAAGCCATAGCCCAGAC-ATGGTCTTACACGG
36837227 GCGCACTTAT
Statistics
Matches: 112, Mismatches: 12, Indels: 19
0.78 0.08 0.13
Matches are distributed among these distances:
46 26 0.23
47 5 0.04
48 4 0.04
50 1 0.01
51 1 0.01
52 1 0.01
53 73 0.65
55 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (48 bp):
GAAGCCATAGCCCAGACATGGTCTTACACGGAATCACATTATCATACC
Found at i:36837157 original size:53 final size:53
Alignment explanation
Indices: 36837079--36837226 Score: 199
Period size: 53 Copynumber: 2.8 Consensus size: 53
36837069 ACACGGTTCA
* * *
36837079 CATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTAT
1 CATATTATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTAT
* *
36837132 CATATTATACCGATGCCATAGCCCAGCTATGGTTTTATACGGAGTCACATTAT
1 CATATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTAT
* ** *
36837185 CACATTGCACCGATGCCATAGCCCAGCTATGGTCTTAAACGG
1 CATATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGG
36837227 GCGCACTTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
52 1 0.01
53 83 0.99
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (53 bp):
CATATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTAT
Found at i:36838687 original size:4 final size:4
Alignment explanation
Indices: 36838674--36838703 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
36838664 CATACTTTTG
36838674 ACAT -CAT ACAT ACAT ACAT ACAT ACAT ACA
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA
36838704 GACTTTTCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
ACAT
Found at i:36847408 original size:15 final size:15
Alignment explanation
Indices: 36847388--36847421 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36847378 GAGCTCACGT
*
36847388 GGTACTAGTGGACGA
1 GGTACTAGAGGACGA
*
36847403 GGTACTAGAGGCCGA
1 GGTACTAGAGGACGA
36847418 GGTA
1 GGTA
36847422 GAGGTCATAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.15, G:0.41, T:0.18
Consensus pattern (15 bp):
GGTACTAGAGGACGA
Found at i:36854559 original size:8 final size:8
Alignment explanation
Indices: 36854526--36854582 Score: 55
Period size: 8 Copynumber: 7.1 Consensus size: 8
36854516 TAAATAAGAA
36854526 ATAATAATT
1 ATAATAA-T
36854535 ATAATAAT
1 ATAATAAT
*
36854543 TTAATAAT
1 ATAATAAT
36854551 ATAATAAT
1 ATAATAAT
36854559 AT-AT-AT
1 ATAATAAT
**
36854565 ATATATGTT
1 ATA-ATAAT
36854574 ATAATAAT
1 ATAATAAT
36854582 A
1 A
36854583 AAAGAATAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
6 4 0.10
7 2 0.05
8 23 0.57
9 11 0.28
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (8 bp):
ATAATAAT
Found at i:36854789 original size:13 final size:13
Alignment explanation
Indices: 36854773--36854798 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36854763 AAGAAAGAAT
36854773 ACTACTTGAGTTA
1 ACTACTTGAGTTA
36854786 ACTACTTGAGTTA
1 ACTACTTGAGTTA
36854799 TGTTGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
ACTACTTGAGTTA
Found at i:36855544 original size:6 final size:6
Alignment explanation
Indices: 36855535--36855566 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
36855525 CCTGATTCTG
*
36855535 ACTGTT ACTGTT ACTGCT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
36855567 CCTACGGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (6 bp):
ACTGTT
Found at i:36859097 original size:46 final size:45
Alignment explanation
Indices: 36859030--36859195 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 45
36859020 CGCCCCTAAG
*
36859030 TGAACTC-AGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGA-ACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* *
36859076 TGAACTCGAACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGAACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * * *
36859123 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGAACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
*
36859169 TGAACTCGGACTCAACTCAACGAGTTC
1 TGAACTCGAACTCAACTCAACGAGTTC
36859196 TGATGCTCAA
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 52 0.52
47 29 0.29
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
TGAACTCGAACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:36859190 original size:93 final size:93
Alignment explanation
Indices: 36859031--36859201 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
36859021 GCCCCTAAGT
* *
36859031 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGAACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
36859096 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
36859124 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
*
36859189 CGAGTTCTGATGC
66 CGAGTTCGGATGC
36859202 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGAACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36864360 original size:8 final size:8
Alignment explanation
Indices: 36864338--36864369 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
36864328 AAATAAGAAA
36864338 TAATAATT
1 TAATAATT
36864346 ATAATAATT
1 -TAATAATT
36864355 TAATAATT
1 TAATAATT
36864363 TAATAAT
1 TAATAAT
36864370 ATATATGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TAATAATT
Found at i:36864472 original size:6 final size:6
Alignment explanation
Indices: 36864457--36864492 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
36864447 GGAAAGAAAG
36864457 AAAG-A AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
36864493 GGAAAAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:36864499 original size:18 final size:18
Alignment explanation
Indices: 36864449--36864499 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 18
36864439 CAAAGTAGGG
36864449 AAAGAAAGAAAGAAAAGAA
1 AAAGAAAGAAA-AAAAGAA
36864468 AAAGAAA-AAGAAAAAGAA
1 AAAGAAAGAA-AAAAAGAA
36864486 AAAGAAAGGAAAAA
1 AAAGAAA-GAAAAA
36864500 TAGGGTTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
18 16 0.55
19 11 0.38
20 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAAAAAAGAA
Found at i:36865349 original size:6 final size:6
Alignment explanation
Indices: 36865338--36865369 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
36865328 CCTGATTCTA
*
36865338 ACTGTT ACTGTT ACTGCT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT ACTGTT AC
36865370 CCTACGGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.22, G:0.16, T:0.44
Consensus pattern (6 bp):
ACTGTT
Found at i:36868975 original size:69 final size:69
Alignment explanation
Indices: 36868900--36869305 Score: 438
Period size: 69 Copynumber: 5.9 Consensus size: 69
36868890 TTATATTTGT
*
36868900 TCTATTTATTCATTTATTATTCTTTTACTTTTTAACA-ACCTAAATTTAATATTATTTATATTTG
1 TCTATTTATTCATTTATTATTCTTTTACTTTTTAA-ATACTTAAATTTAATATTATTTATATTTG
36868964 TTATA
65 TTATA
* *
36868969 TCTATTTACTT-ATTTGTTTATTATTCTTTTACTTTTCAAATACCTAAATTTAATATTATTTATA
1 TCTATTTA-TTCA----TTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATATTATTTATA
*
36869033 TTTGTTTTA
61 TTTGTTATA
* * *
36869042 TTTATTTATTTATTTATTATTC-TTTAGCTTTTTAAATACTTAAATTTAATATTATTTATATTTA
1 TCTATTTATTCATTTATTATTCTTTTA-CTTTTTAAATACTTAAATTTAATATTATTTATATTTG
36869106 TTATA
65 TTATA
* * *
36869111 TCTATTTATTAATTTGCTTATTATTCTTTTACTTTTTTAAATACTTAAATTTAACATTATTTGTA
1 TCTATTTATTCA--T--TTATTATTCTTTTAC-TTTTTAAATACTTAAATTTAATATTATTTATA
*
36869176 TTTGTTTTA
61 TTTGTTATA
* * * *
36869185 T-TGCTTTATTTATTTATTATTCTTTTACTTCTTAAATACTTAAATTTAATATTA--TCTATTT-
1 TCT-ATTTATTCATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATATTATTTATATTTG
36869246 TT-TA
65 TTATA
* * * * *
36869250 TCTATTTATTCATTT-TT-TT-TTTTACTCTTTAAATATTTTAATTTGATATTACTTAT
1 TCTATTTATTCATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATATTATTTAT
36869306 GCTTCCTTTT
Statistics
Matches: 293, Mismatches: 26, Indels: 41
0.81 0.07 0.11
Matches are distributed among these distances:
62 27 0.09
63 2 0.01
64 4 0.01
65 13 0.04
66 3 0.01
67 6 0.02
68 4 0.01
69 91 0.31
70 17 0.06
71 1 0.00
72 4 0.01
73 72 0.25
74 49 0.17
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.61
Consensus pattern (69 bp):
TCTATTTATTCATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATATTATTTATATTTGT
TATA
Found at i:36869073 original size:142 final size:143
Alignment explanation
Indices: 36868902--36869264 Score: 526
Period size: 142 Copynumber: 2.6 Consensus size: 143
36868892 ATATTTGTTC
* * *
36868902 TATTTATTCATTTATTATTCTTTTACTTTTTAACA-ACCTAAATTTAATATTATTTATATTTGTT
1 TATTTATTTATTTATTATTCTTTTACTTTTTAA-ATACTTAAATTTAATATTATTTATATTTATT
* *
36868966 ATATCTATTTACTT-ATTTGTTTATTATTCTTTTAC-TTTTCAAATACCTAAATTTAATATTATT
65 ATATCTATTTA-TTAATTTGCTTATTATTCTTTTACTTTTTCAAATACCTAAATTTAACATTATT
36869029 TATATTTGTTTTATT
129 TATATTTGTTTTATT
36869044 TATTTATTTATTTATTATTC-TTTAGCTTTTTAAATACTTAAATTTAATATTATTTATATTTATT
1 TATTTATTTATTTATTATTCTTTTA-CTTTTTAAATACTTAAATTTAATATTATTTATATTTATT
* *
36869108 ATATCTATTTATTAATTTGCTTATTATTCTTTTACTTTTTTAAATACTTAAATTTAACATTATTT
65 ATATCTATTTATTAATTTGCTTATTATTCTTTTACTTTTTCAAATACCTAAATTTAACATTATTT
*
36869173 GTATTTGTTTTATT
130 ATATTTGTTTTATT
** * *
36869187 GCTTTATTTATTTATTATTCTTTTACTTCTTAAATACTTAAATTTAATATTA--TCTATTT-TT-
1 TATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATATTATTTATATTTATTA
*
36869248 TATCTATTTATTCATTT
66 TATCTATTTATTAATTT
36869265 TTTTTTTTAC
Statistics
Matches: 203, Mismatches: 13, Indels: 13
0.89 0.06 0.06
Matches are distributed among these distances:
139 16 0.08
140 2 0.01
141 13 0.06
142 85 0.42
143 83 0.41
144 4 0.02
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (143 bp):
TATTTATTTATTTATTATTCTTTTACTTTTTAAATACTTAAATTTAATATTATTTATATTTATTA
TATCTATTTATTAATTTGCTTATTATTCTTTTACTTTTTCAAATACCTAAATTTAACATTATTTA
TATTTGTTTTATT
Found at i:36871195 original size:5 final size:5
Alignment explanation
Indices: 36871185--36871212 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
36871175 CCGAAACCAT
36871185 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAA
36871213 TGAAGCTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:36876011 original size:32 final size:32
Alignment explanation
Indices: 36875971--36876038 Score: 136
Period size: 32 Copynumber: 2.1 Consensus size: 32
36875961 ACAGAGCAGA
36875971 CAGAGTGTTTGTCTGACACGTTTATAGATATG
1 CAGAGTGTTTGTCTGACACGTTTATAGATATG
36876003 CAGAGTGTTTGTCTGACACGTTTATAGATATG
1 CAGAGTGTTTGTCTGACACGTTTATAGATATG
36876035 CAGA
1 CAGA
36876039 CTAACTGTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.26, C:0.13, G:0.25, T:0.35
Consensus pattern (32 bp):
CAGAGTGTTTGTCTGACACGTTTATAGATATG
Found at i:36882996 original size:63 final size:64
Alignment explanation
Indices: 36882897--36883031 Score: 184
Period size: 63 Copynumber: 2.1 Consensus size: 64
36882887 ACAAATTGCT
* *
36882897 CAACTTAAAGCGGAGGCAGCATCGAGAGAAGCAGAGGCTCAA-AGAAAATA-CGAACTCCAGCTA
1 CAACTTAAAGCGGAGGCAGCAACGAGAGAAGCAGAGGC-AAACAGAAAATATCGAACTCCAGCTA
* * *
36882960 CAACTTAAAGCGGATGTAGCAACGAGGGAAGCAGAGGCAAACAGAAAATATGTCGAACTCCAGCT
1 CAACTTAAAGCGGAGGCAGCAACGAGAGAAGCAGAGGCAAACAGAAAATA--TCGAACTCCAGCT
36883025 A
64 A
36883026 CAACTT
1 CAACTT
36883032 CAGAATATGA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
62 2 0.03
63 42 0.67
66 19 0.30
ACGTcount: A:0.41, C:0.21, G:0.24, T:0.13
Consensus pattern (64 bp):
CAACTTAAAGCGGAGGCAGCAACGAGAGAAGCAGAGGCAAACAGAAAATATCGAACTCCAGCTA
Found at i:36883563 original size:41 final size:41
Alignment explanation
Indices: 36883506--36883587 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
36883496 AGATGATCAG
36883506 AATCCAAGTCAACATCAATGTTCCTCTCATTGTCTCTGCTT
1 AATCCAAGTCAACATCAATGTTCCTCTCATTGTCTCTGCTT
36883547 AATCCAAGTCAACATCAATGTTCCTCTCATTGTCTCTGCTT
1 AATCCAAGTCAACATCAATGTTCCTCTCATTGTCTCTGCTT
36883588 TACTATAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.37
Consensus pattern (41 bp):
AATCCAAGTCAACATCAATGTTCCTCTCATTGTCTCTGCTT
Found at i:36886211 original size:14 final size:14
Alignment explanation
Indices: 36886192--36886219 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36886182 TCCACAACCC
36886192 TGGTTAAAAGGCTA
1 TGGTTAAAAGGCTA
36886206 TGGTTAAAAGGCTA
1 TGGTTAAAAGGCTA
36886220 GGCAAAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.29, T:0.29
Consensus pattern (14 bp):
TGGTTAAAAGGCTA
Found at i:36888344 original size:17 final size:17
Alignment explanation
Indices: 36888304--36888336 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36888294 CTCCAAAAGT
36888304 GCTTTTGGAAAAAAATA
1 GCTTTTGGAAAAAAATA
*
36888321 GCTTTTGTAAAAAAAT
1 GCTTTTGGAAAAAAAT
36888337 CACTTTTGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.15, T:0.33
Consensus pattern (17 bp):
GCTTTTGGAAAAAAATA
Found at i:36903734 original size:2 final size:2
Alignment explanation
Indices: 36903727--36903770 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
36903717 TGTACGTAGT
36903727 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36903769 TA
1 TA
36903771 CGAACATACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36905147 original size:35 final size:35
Alignment explanation
Indices: 36905097--36905211 Score: 140
Period size: 35 Copynumber: 3.3 Consensus size: 35
36905087 CCCCTTTCGA
* *
36905097 GGTGTCGCCCTGAAGGACTTGCATACCATTTACAT
1 GGTGTCGCCCCGAAGGACTTACATACCATTTACAT
* *
36905132 GGTGTCTCCCCGAAGGACTTACATACCATTTACAC
1 GGTGTCGCCCCGAAGGACTTACATACCATTTACAT
* * * * *
36905167 GGTGTCGCGCCGAAGAACCTATATACCGTTTACAT
1 GGTGTCGCCCCGAAGGACTTACATACCATTTACAT
*
36905202 GGTGTTGCCC
1 GGTGTCGCCC
36905212 TGAAAGATTA
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.27
Consensus pattern (35 bp):
GGTGTCGCCCCGAAGGACTTACATACCATTTACAT
Found at i:36908746 original size:19 final size:17
Alignment explanation
Indices: 36908714--36908748 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
36908704 GAATATAAAA
36908714 TCATATCTTCTAAGATT
1 TCATATCTTCTAAGATT
36908731 TCATATCATATCTAAGAT
1 TCATATC-T-TCTAAGAT
36908749 CTCTAAGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 1 0.06
19 8 0.50
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (17 bp):
TCATATCTTCTAAGATT
Found at i:36908772 original size:22 final size:22
Alignment explanation
Indices: 36908696--36908772 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
36908686 TACAAATCAA
*
36908696 ATCTCTAAGAATATAAAATCAT
1 ATCTCTAAGAATATAAAATAAT
** *
36908718 ATCTTCTAAGATTTCATATCATATCTAAG
1 ATC-TCTAAGA----ATAT-A-AAATAAT
36908747 ATCTCTAAGAATATAAAATAAT
1 ATCTCTAAGAATATAAAATAAT
36908769 ATCT
1 ATCT
36908773 TATAAGATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 11 0.27
23 8 0.20
24 4 0.10
27 4 0.10
28 8 0.20
29 6 0.15
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.36
Consensus pattern (22 bp):
ATCTCTAAGAATATAAAATAAT
Found at i:36908772 original size:51 final size:51
Alignment explanation
Indices: 36908696--36908923 Score: 273
Period size: 51 Copynumber: 4.7 Consensus size: 51
36908686 TACAAATCAA
* *
36908696 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTTCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
36908747 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
*
36908798 ATCTCTAAG-AT-T---AT-A-A---TAT-A-ATATCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
* * *
36908837 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
* * *
36908888 ATCTCTAAGATTAAATAAAATCATATCTTTTAAGAT
1 ATCTCTAAGA--ATATAAAATAATATCTTATAAGAT
36908924 CATGTTTCCA
Statistics
Matches: 152, Mismatches: 11, Indels: 26
0.80 0.06 0.14
Matches are distributed among these distances:
39 27 0.18
40 2 0.01
41 4 0.03
44 3 0.02
45 2 0.01
46 3 0.02
49 4 0.03
50 3 0.02
51 85 0.56
53 19 0.12
ACGTcount: A:0.43, C:0.13, G:0.06, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
Found at i:36908827 original size:39 final size:39
Alignment explanation
Indices: 36908782--36908861 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
36908772 TTATAAGATT
36908782 TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
1 TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
36908821 TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
1 TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
36908860 TC
1 TC
36908862 TTATAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (39 bp):
TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
Found at i:36908881 original size:90 final size:87
Alignment explanation
Indices: 36908731--36908914 Score: 314
Period size: 90 Copynumber: 2.1 Consensus size: 87
36908721 TTCTAAGATT
*
36908731 TCATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTA
1 TCATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTA
36908796 AGATCTCTAAGATTATAATATAATA
66 AGATCTCTAAGATTA-AATA-AA-A
* *
36908821 TCATATCATATCTAAGATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATCTA
1 TCATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTA
36908886 AGATCTCTAAGATTAAATAAAA
66 AGATCTCTAAGATTAAATAAAA
36908908 TCATATC
1 TCATATC
36908915 TTTTAAGATC
Statistics
Matches: 91, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
87 8 0.09
88 2 0.02
89 4 0.04
90 77 0.85
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (87 bp):
TCATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTA
AGATCTCTAAGATTAAATAAAA
Found at i:36909995 original size:96 final size:96
Alignment explanation
Indices: 36909829--36910022 Score: 291
Period size: 96 Copynumber: 2.0 Consensus size: 96
36909819 TCGCTTCTTT
* *
36909829 TTGCTCCTTTTAGCCCTCTTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCTT
1 TTGCTCCTTTTAGCCCTATTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
* * * *
36909894 GTCTGCTCCATCGTTCCCTTCGATGACAGAC
66 ATCTGCTCCATCATTCCCATCGATAACAGAC
* *
36909925 TTGCTCCTCTTT-GCCCTATTGGCTTCGGCTTTTCTCTTGCTCGAACCAAGCTTCTTGGGCTCCG
1 TTGCTCCT-TTTAGCCCTATTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCG
*
36909989 TATCTGCTCGATCATTCCCATCGATAACAGAC
65 TATCTGCTCCATCATTCCCATCGATAACAGAC
36910021 TT
1 TT
36910023 CCTCGGATAC
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
96 85 0.97
97 3 0.03
ACGTcount: A:0.13, C:0.33, G:0.18, T:0.36
Consensus pattern (96 bp):
TTGCTCCTTTTAGCCCTATTGGCTTCGGCTTTACCCTTGCTCGAACCAAGCTTCTTGGGCTCCGT
ATCTGCTCCATCATTCCCATCGATAACAGAC
Found at i:36911740 original size:51 final size:51
Alignment explanation
Indices: 36911680--36911907 Score: 246
Period size: 51 Copynumber: 4.7 Consensus size: 51
36911670 TACAAATCAA
* *
36911680 ATCTCTAAGAATATAAAATCATATCTTCTAAGATTACATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
*
36911731 ATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* *
36911782 ATCTCTAAG-AT-T---AT-A-A---TATAATA-T-CATATCATATCTAAA
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * * *
36911821 ATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATTTAAG
1 ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
* * *
36911872 ATCTCTAAGATTAAATAAAATCATATCTTTTAAGAT
1 ATCTCTAAGA--ATATAAAATAATATCTTATAAGAT
36911908 CATGTTTCCA
Statistics
Matches: 149, Mismatches: 14, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
39 23 0.15
40 2 0.01
41 7 0.05
44 3 0.02
45 2 0.01
46 3 0.02
49 7 0.05
50 3 0.02
51 80 0.54
53 19 0.13
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (51 bp):
ATCTCTAAGAATATAAAATAATATCTTATAAGATTACATATCATATCTAAG
Found at i:36911756 original size:22 final size:22
Alignment explanation
Indices: 36911680--36911756 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
36911670 TACAAATCAA
*
36911680 ATCTCTAAGAATATAAAATCAT
1 ATCTCTAAGAATATAAAATAAT
** *
36911702 ATCTTCTAAGATTACATATCATATCTAAG
1 ATC-TCTAAG---A-ATAT-A-AAATAAT
36911731 ATCTCTAAGAATATAAAATAAT
1 ATCTCTAAGAATATAAAATAAT
36911753 ATCT
1 ATCT
36911757 TATAAGATTT
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
22 11 0.27
23 7 0.17
24 4 0.10
25 1 0.02
26 1 0.02
27 4 0.10
28 7 0.17
29 6 0.15
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.35
Consensus pattern (22 bp):
ATCTCTAAGAATATAAAATAAT
Found at i:36911805 original size:29 final size:29
Alignment explanation
Indices: 36911706--36911806 Score: 83
Period size: 29 Copynumber: 3.8 Consensus size: 29
36911696 AATCATATCT
* *
36911706 TCTAAGATTA-CATATCATATCTAAGATC
1 TCTAAGATTATAATATAATATCTAAGATC
* *
36911734 TCTAAGAATATAAAATAATATC-----T-
1 TCTAAGATTATAATATAATATCTAAGATC
* * *
36911757 TATAAGATT-TCATATCATATCTAAGATC
1 TCTAAGATTATAATATAATATCTAAGATC
36911785 TCTAAGATTATAATATAATATC
1 TCTAAGATTATAATATAATATC
36911807 ATATCATATC
Statistics
Matches: 53, Mismatches: 12, Indels: 15
0.66 0.15 0.19
Matches are distributed among these distances:
22 9 0.17
23 7 0.13
24 1 0.02
27 1 0.02
28 17 0.32
29 18 0.34
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.38
Consensus pattern (29 bp):
TCTAAGATTATAATATAATATCTAAGATC
Found at i:36911811 original size:39 final size:39
Alignment explanation
Indices: 36911766--36911845 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
36911756 TTATAAGATT
*
36911766 TCATATCATATCTAAGATCTCTAAGATTATAATATAATA
1 TCATATCATATCTAAAATCTCTAAGATTATAATATAATA
36911805 TCATATCATATCTAAAATCTCTAAGATTATAATATAATA
1 TCATATCATATCTAAAATCTCTAAGATTATAATATAATA
36911844 TC
1 TC
36911846 TTATAAGATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.14, G:0.04, T:0.39
Consensus pattern (39 bp):
TCATATCATATCTAAAATCTCTAAGATTATAATATAATA
Found at i:36911865 original size:90 final size:87
Alignment explanation
Indices: 36911716--36911898 Score: 294
Period size: 90 Copynumber: 2.1 Consensus size: 87
36911706 TCTAAGATTA
* *
36911716 CATATCATATCTAAGATCTCTAAGAATATAAAATAATATCTTATAAGATTTCATATCATATCTAA
1 CATATCATATCTAAAATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTAA
36911781 GATCTCTAAGATTATAATATAATAT
66 GATCTCTAAGATTA-AATA-AA-AT
* * *
36911806 CATATCATATCTAAAATCTCTAAGATTATAATATAATATCTTATAAGATTCCATATCATATTTAA
1 CATATCATATCTAAAATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTAA
36911871 GATCTCTAAGATTAAATAAAAT
66 GATCTCTAAGATTAAATAAAAT
36911893 CATATC
1 CATATC
36911899 TTTTAAGATC
Statistics
Matches: 88, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
87 8 0.09
88 2 0.02
89 4 0.05
90 74 0.84
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (87 bp):
CATATCATATCTAAAATCTCTAAGAATATAAAATAATATCTTATAAGATTCCATATCATATCTAA
GATCTCTAAGATTAAATAAAAT
Found at i:36913786 original size:19 final size:19
Alignment explanation
Indices: 36913762--36913823 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
36913752 AATCTTTAAG
36913762 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36913781 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAGATAT
36913800 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
36913821 GAT
1 GAT
36913824 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 31 0.79
21 8 0.21
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36917214 original size:15 final size:16
Alignment explanation
Indices: 36917194--36917226 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
36917184 TATATATATT
36917194 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
36917209 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
36917226 T
1 T
36917227 ATAACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:36917299 original size:21 final size:22
Alignment explanation
Indices: 36917273--36917331 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
36917263 GTTTTAAGAA
*
36917273 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
36917294 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
36917316 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
36917332 GATTTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:36917346 original size:26 final size:24
Alignment explanation
Indices: 36917302--36917351 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
36917292 ATTTGTTTTA
*
36917302 ATATTTGTTTTTATGTTTTTAAAT
1 ATATTTGTTTTTATATTTTTAAAT
36917326 ATATTTGATTTATTATATTTTTAAAT
1 ATATTTG-TTT-TTATATTTTTAAAT
36917352 TTTTTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
ATATTTGTTTTTATATTTTTAAAT
Found at i:36926985 original size:4 final size:4
Alignment explanation
Indices: 36926976--36927004 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
36926966 AGCAAACGTG
36926976 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
36927005 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:36934181 original size:4 final size:4
Alignment explanation
Indices: 36934172--36934200 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
36934162 AGCAAACGTG
36934172 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
36934201 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:36939471 original size:40 final size:40
Alignment explanation
Indices: 36939416--36939679 Score: 302
Period size: 39 Copynumber: 6.7 Consensus size: 40
36939406 ATTTGATGTG
*
36939416 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTGGAATTA
*
36939456 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* * ** *
36939496 TATTCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* *
36939535 TATCCAGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* * * *
36939575 TATCCGGACTT-AAGATCCGCAGGCTTTGTGCTGGTATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* * * * * *
36939614 TATCCGGACTTAAAG-TCCGCAGACTTCGTACTGGTACTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
* *
36939653 TATCCGGGCTTAAAGTCCCGTAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTT
36939680 TGTGTTGGTG
Statistics
Matches: 195, Mismatches: 25, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
39 104 0.53
40 91 0.47
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTA
Found at i:36939678 original size:79 final size:78
Alignment explanation
Indices: 36939414--36939683 Score: 319
Period size: 79 Copynumber: 3.4 Consensus size: 78
36939404 ATATTTGATG
* * * *
36939414 TGTATCCGGGCTTAAAGACCCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAG
1 TGTATCCGGACTTAAAG-TCCGCAGGCTTTGTGCTGGAATTATATCC-GGCTTAAAGACCCGCAG
36939479 GCTTCGTGCTGGAAT
64 GCTTCGTGCTGGAAT
* * * *
36939494 TGTATTCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCAGGCTTAAAGACCCGCAGG
1 TGTATCCGGACTTAAAGTCCGCAGGCTTTGTGCTGGAATTATATCC-GGCTTAAAGACCCGCAGG
36939559 CTTCGTGCTGGAAT
65 CTTCGTGCTGGAAT
* *
36939573 TGTATCCGGACTT-AAGATCCGCAGGCTTTGTGCTGGTATTATATCCGGACTTAAAG-TCCGCAG
1 TGTATCCGGACTTAAAG-TCCGCAGGCTTTGTGCTGGAATTATATCCGG-CTTAAAGACCCGCAG
* * * *
36939636 ACTTCGTACTGGTAC
64 GCTTCGTGCTGGAAT
* * *
36939651 TATATCCGGGCTTAAAGTCCCGTAGGCTTTGTG
1 TGTATCCGGACTTAAAGT-CCGCAGGCTTTGTG
36939684 TTGGTGATTG
Statistics
Matches: 164, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
78 33 0.20
79 117 0.71
80 14 0.09
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (78 bp):
TGTATCCGGACTTAAAGTCCGCAGGCTTTGTGCTGGAATTATATCCGGCTTAAAGACCCGCAGGC
TTCGTGCTGGAAT
Found at i:36946156 original size:16 final size:16
Alignment explanation
Indices: 36946135--36946165 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36946125 TGAGTTGTGT
36946135 ATCGGACTTAGAGGAC
1 ATCGGACTTAGAGGAC
36946151 ATCGGACTTAGAGGA
1 ATCGGACTTAGAGGA
36946166 AAAAGTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.32, T:0.19
Consensus pattern (16 bp):
ATCGGACTTAGAGGAC
Found at i:36947388 original size:39 final size:39
Alignment explanation
Indices: 36947334--36947412 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
36947324 GAGATTAAAA
36947334 GTCTAATCTCGTGACACATTCGTGATGTTATCTAAGAGT
1 GTCTAATCTCGTGACACATTCGTGATGTTATCTAAGAGT
36947373 GTCTAATCTCGTGACACATTCGTGATGTTATCTAAGAGT
1 GTCTAATCTCGTGACACATTCGTGATGTTATCTAAGAGT
36947412 G
1 G
36947413 AAGGGGTGTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (39 bp):
GTCTAATCTCGTGACACATTCGTGATGTTATCTAAGAGT
Found at i:36949285 original size:28 final size:28
Alignment explanation
Indices: 36949244--36949307 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36949234 GATTTGTGTA
36949244 AAGAAGT-GCAAAGTTTTGAATACATTG
1 AAGAAGTAGCAAAGTTTTGAATACATTG
36949271 AAGAAGTAGCAAAGTTTTGAATACATTG
1 AAGAAGTAGCAAAGTTTTGAATACATTG
*
36949299 AAGATGTAG
1 AAGAAGTAG
36949308 TTCTTGTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 7 0.20
28 28 0.80
ACGTcount: A:0.42, C:0.06, G:0.23, T:0.28
Consensus pattern (28 bp):
AAGAAGTAGCAAAGTTTTGAATACATTG
Found at i:36952024 original size:18 final size:18
Alignment explanation
Indices: 36951997--36952062 Score: 66
Period size: 17 Copynumber: 3.7 Consensus size: 18
36951987 TACTTTTTAT
* *
36951997 TTTTTTTAATTTTAAATA
1 TTTTTATAATTTTAATTA
36952015 TTTTTATAA-TTTAATTAA
1 TTTTTATAATTTTAATT-A
*
36952033 TGTTTTA-AATTTT-TTTA
1 T-TTTTATAATTTTAATTA
36952050 TTTTTATAATTTT
1 TTTTTATAATTTT
36952063 TAAGGATTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
16 5 0.12
17 14 0.34
18 14 0.34
19 8 0.20
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTTTATAATTTTAATTA
Found at i:36952062 original size:17 final size:17
Alignment explanation
Indices: 36951990--36952063 Score: 60
Period size: 18 Copynumber: 4.2 Consensus size: 17
36951980 TCTTTAGTAC
*
36951990 TTTTTATTTTTTTTAATT
1 TTTTTA-TTTTTATAATT
**
36952008 TTAAATATTTTTATAATT
1 TT-TTTATTTTTATAATT
* *
36952026 TAATTAATGTTTTA-AATT
1 T-TTTTAT-TTTTATAATT
36952044 TTTTTATTTTTATAATT
1 TTTTTATTTTTATAATT
36952061 TTT
1 TTT
36952064 AAGGATTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 9
0.70 0.15 0.15
Matches are distributed among these distances:
16 5 0.12
17 11 0.26
18 20 0.47
19 7 0.16
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.70
Consensus pattern (17 bp):
TTTTTATTTTTATAATT
Found at i:36953937 original size:14 final size:15
Alignment explanation
Indices: 36953915--36953948 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
36953905 ATTCCATTGC
36953915 TTCTTCTTCTGTTTTCT
1 TTCTTCTTC--TTTTCT
36953932 TTCTTCTTCTTTTCT
1 TTCTTCTTCTTTTCT
36953947 TT
1 TT
36953949 TTGCTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.00, C:0.24, G:0.03, T:0.74
Consensus pattern (15 bp):
TTCTTCTTCTTTTCT
Found at i:36961664 original size:18 final size:19
Alignment explanation
Indices: 36961638--36961675 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
36961628 AGCAATGTGT
36961638 ATACCCCACAAC-AAATGG
1 ATACCCCACAACAAAATGG
*
36961656 ATACTCCACAACAAAATGG
1 ATACCCCACAACAAAATGG
36961675 A
1 A
36961676 GTGACTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.47, C:0.29, G:0.11, T:0.13
Consensus pattern (19 bp):
ATACCCCACAACAAAATGG
Found at i:36969386 original size:19 final size:19
Alignment explanation
Indices: 36969358--36969395 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
36969348 CTCCAACTTG
* *
36969358 AGGGATGTTACGAGTAATT
1 AGGGAAGTTAAGAGTAATT
36969377 AGGGAAGTTAAGAGTAATT
1 AGGGAAGTTAAGAGTAATT
36969396 TATGGGATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.03, G:0.32, T:0.29
Consensus pattern (19 bp):
AGGGAAGTTAAGAGTAATT
Found at i:36969936 original size:29 final size:29
Alignment explanation
Indices: 36969881--36969937 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
36969871 TTCCATCTTG
*
36969881 GTACATAAACTTTTTTTTTGTCATAAGTA
1 GTACATAAACTTTTTTCTTGTCATAAGTA
* *
36969910 GTACCTAAACTATTTTTCTT-TCTTAAGT
1 GTACATAAACT-TTTTTCTTGTCATAAGT
36969938 TGGTACTCCC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.49
Consensus pattern (29 bp):
GTACATAAACTTTTTTCTTGTCATAAGTA
Found at i:36971918 original size:21 final size:21
Alignment explanation
Indices: 36971882--36971945 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
36971872 TTTGGTTGGA
* *
36971882 TCAACTCTTTTAAGCTTCTGT
1 TCAACTCTTATGAGCTTCTGT
* * *
36971903 TTAATTCTTATGAGCTTTTGT
1 TCAACTCTTATGAGCTTCTGT
*
36971924 TCAACTCTTTTGAGCTTCTGT
1 TCAACTCTTATGAGCTTCTGT
36971945 T
1 T
36971946 GACGATGTCT
Statistics
Matches: 34, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.12, T:0.52
Consensus pattern (21 bp):
TCAACTCTTATGAGCTTCTGT
Found at i:36978790 original size:3 final size:3
Alignment explanation
Indices: 36978770--36978852 Score: 57
Period size: 3 Copynumber: 28.3 Consensus size: 3
36978760 GCATCTCCAT
* * * *
36978770 TTC TTC TCC TCC TT- TTC TTC TTC TTC TTT TTC -TC TTT TTC TTC -TC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
36978815 CTA TTC TTC TTC TTC TTC TTT TTAGC -TC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TT--C TTC TTC TTC TTC T
36978853 ACTACCTATA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
2 7 0.11
3 55 0.87
4 1 0.02
ACGTcount: A:0.02, C:0.31, G:0.01, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:36978792 original size:17 final size:17
Alignment explanation
Indices: 36978770--36978836 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
36978760 GCATCTCCAT
*
36978770 TTCTTCTCCTCCTTTTC
1 TTCTTCTTCTCCTTTTC
*
36978787 TTCTTCTTCT-TTTTCTC
1 TTCTTCTTCTCCTTT-TC
* *
36978804 TTTTTCTTCTCCTATTC
1 TTCTTCTTCTCCTTTTC
*
36978821 TTCTTCTTCTTCTTTT
1 TTCTTCTTCTCCTTTT
36978837 TAGCTCTTCT
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
16 3 0.08
17 35 0.88
18 2 0.05
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.67
Consensus pattern (17 bp):
TTCTTCTTCTCCTTTTC
Found at i:36978798 original size:14 final size:14
Alignment explanation
Indices: 36978769--36978834 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
36978759 GGCATCTCCA
* *
36978769 TTTCTTCTCCTCCT
1 TTTCTTCTTCTTCT
36978783 TTTCTTCTTCTTCT
1 TTTCTTCTTCTTCT
*
36978797 TTT-TCTCTTTTTCT
1 TTTCT-TCTTCTTCT
* * *
36978811 TCTCCTATTCTTCT
1 TTTCTTCTTCTTCT
36978825 TCTTCTTCTT
1 T-TTCTTCTT
36978835 TTTAGCTCTT
Statistics
Matches: 39, Mismatches: 10, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
13 1 0.03
14 33 0.85
15 5 0.13
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTCTTCTTCTTCT
Found at i:36978825 original size:37 final size:38
Alignment explanation
Indices: 36978769--36978852 Score: 118
Period size: 37 Copynumber: 2.2 Consensus size: 38
36978759 GGCATCTCCA
*
36978769 TTTCTTCTCCTCCTTTTCTTCTTCTTCTTTTT-CTCTT
1 TTTCTTCTCCTCATTTTCTTCTTCTTCTTTTTACTCTT
36978806 TTTCTTCTCCT-ATTCTTCTTCTTCTTCTTTTTAGCTCTT
1 TTTCTTCTCCTCATT-TTCTTCTTCTTCTTTTTA-CTCTT
*
36978845 CTTCTTCT
1 TTTCTTCT
36978853 ACTACCTATA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
36 2 0.05
37 28 0.67
39 12 0.29
ACGTcount: A:0.02, C:0.31, G:0.01, T:0.65
Consensus pattern (38 bp):
TTTCTTCTCCTCATTTTCTTCTTCTTCTTTTTACTCTT
Found at i:36978849 original size:28 final size:28
Alignment explanation
Indices: 36978785--36978852 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
36978775 CTCCTCCTTT
* **
36978785 TCTTCTTCTTCTTTTTCTCTTTTTCTTC
1 TCTTCTTCTTCTTCTTCTCTTTTTCAGC
* *
36978813 TCCTATTCTTCTTCTTCTTCTTTTT-AGC
1 TCTTCTTCTTCTTCTTC-TCTTTTTCAGC
36978841 TCTTCTTCTTCT
1 TCTTCTTCTTCT
36978853 ACTACCTATA
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
28 25 0.78
29 7 0.22
ACGTcount: A:0.03, C:0.29, G:0.01, T:0.66
Consensus pattern (28 bp):
TCTTCTTCTTCTTCTTCTCTTTTTCAGC
Found at i:36980163 original size:27 final size:27
Alignment explanation
Indices: 36980125--36980192 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
36980115 TCATCAAATA
*
36980125 AGTTTTTTGTAGTGGATTGTAGATGAG
1 AGTTTTTTGTAGTGGACTGTAGATGAG
36980152 AGTTTTTTGTAGTGGACTGTAGATGAG
1 AGTTTTTTGTAGTGGACTGTAGATGAG
*
36980179 AGTTTTTTATAGTG
1 AGTTTTTTGTAGTG
36980193 TACAACCGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.22, C:0.01, G:0.31, T:0.46
Consensus pattern (27 bp):
AGTTTTTTGTAGTGGACTGTAGATGAG
Found at i:36983391 original size:12 final size:12
Alignment explanation
Indices: 36983371--36983420 Score: 50
Period size: 11 Copynumber: 4.3 Consensus size: 12
36983361 AACCTTTTTT
*
36983371 TTTTCATTTCTA
1 TTTTAATTTCTA
*
36983383 TTTTAATTTCCA
1 TTTTAATTTCTA
*
36983395 -TTTCATTTC-A
1 TTTTAATTTCTA
*
36983405 TTTTAATTTATA
1 TTTTAATTTCTA
36983417 TTTT
1 TTTT
36983421 CCATTTTAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 1 0.03
11 15 0.48
12 15 0.48
ACGTcount: A:0.22, C:0.12, G:0.00, T:0.66
Consensus pattern (12 bp):
TTTTAATTTCTA
Found at i:36983403 original size:28 final size:29
Alignment explanation
Indices: 36983372--36983478 Score: 80
Period size: 28 Copynumber: 3.7 Consensus size: 29
36983362 ACCTTTTTTT
36983372 TTTCATTTCT-ATTT-TAATTTCCATTTCA
1 TTTCATTT-TAATTTATAATTTCCATTTCA
* *
36983400 TTTCATTTTAATTTATATTTTCCATTTTA
1 TTTCATTTTAATTTATAATTTCCATTTCA
* * * *
36983429 ATT-AATTT-ATTTATCATTT-CAGTTTTTA
1 TTTCATTTTAATTTATAATTTCCA--TTTCA
*
36983457 TTTTCATTTAAATTTATAATTT
1 -TTTCATTTTAATTTATAATTT
36983479 ATTTTCATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
26 2 0.03
27 10 0.16
28 21 0.34
29 16 0.26
30 3 0.05
31 10 0.16
ACGTcount: A:0.26, C:0.10, G:0.01, T:0.63
Consensus pattern (29 bp):
TTTCATTTTAATTTATAATTTCCATTTCA
Found at i:36983421 original size:23 final size:23
Alignment explanation
Indices: 36983371--36983459 Score: 76
Period size: 23 Copynumber: 3.9 Consensus size: 23
36983361 AACCTTTTTT
**
36983371 TTTTCATTTCTATTTTAATTTCCA
1 TTTTCATTTC-ATTTTAATTTATA
36983395 -TTTCATTTCATTTTAATTTATA
1 TTTTCATTTCATTTTAATTTATA
* *
36983417 TTTTCCATTTTA-ATTAATTTAT-
1 TTTT-CATTTCATTTTAATTTATA
* *
36983439 TTATCATTTCAGTTTTTATTT
1 TTTTCATTTCA-TTTTAATTT
36983460 TCATTTAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
21 6 0.11
22 14 0.26
23 27 0.51
24 6 0.11
ACGTcount: A:0.24, C:0.11, G:0.01, T:0.64
Consensus pattern (23 bp):
TTTTCATTTCATTTTAATTTATA
Done.