Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 127 of 335
Found at i:38112067 original size:5 final size:5
Alignment explanation
Indices: 38112057--38112095 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
38112047 TATCCCTTCT
* *
38112057 TTTCC TTTCC TTGCC TTTCT TTTCC TTTCC TTTCC TTTC
1 TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTCC TTTC
38112096 TTTTATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.00, C:0.36, G:0.03, T:0.62
Consensus pattern (5 bp):
TTTCC
Found at i:38112076 original size:20 final size:20
Alignment explanation
Indices: 38112053--38112099 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
38112043 TAATTATCCC
38112053 TTCTTTTCCTTTCCTTGCCT
1 TTCTTTTCCTTTCCTTGCCT
*
38112073 TTCTTTTCCTTTCCTTTCCT
1 TTCTTTTCCTTTCCTTGCCT
38112093 TTCTTTT
1 TTCTTTT
38112100 ATAATAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66
Consensus pattern (20 bp):
TTCTTTTCCTTTCCTTGCCT
Found at i:38123349 original size:130 final size:128
Alignment explanation
Indices: 38123034--38123475 Score: 475
Period size: 130 Copynumber: 3.4 Consensus size: 128
38123024 CCCAAACGGT
* * * * ** * *
38123034 AAATCGAAACCCAGCACGATTGGGCATGATTTATCGAA-TTTCCAAATATGAAACATTGCCTCAT
1 AAAT-GAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCAT
* * * * *
38123098 TTTAATTTGAGAAAACATGGACG-AAACTTCAAAAGGATATTCTGTATTTTAGTCGAATG-GAA
65 TTTATTTTAAGAAAACATGGACGAAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAA
* * * * * ** *
38123160 AATTGAAGCCCAGCATGATTGGGCACGA-CTCCCCAAACT-TCCAAGCACGAAATATTGCCTCGT
1 AAATGAAACCCAGCACGATTGGGCACGATCT-CTCAAACTCCCCAAATACGAAATATTGCCTCAT
* * * *
38123223 TTTATTTTAAGAAAACGTGGATGAAAATTTCAAAAAAGGATATTCCATATTTTAGTCGAACGAAA
65 TTTATTTTAAGAAAACATGGACGAAAATTTC--AAAAGGATATTCCGTATTTTAGTCGAATGAAA
38123288 A
128 A
* *
38123289 AAATGAAACCCAGCACAATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATACTGCCTCATT
1 AAATGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATT
* *
38123354 TTAATTTTTTTAA-AAAAAATGGACGAAATTTTC-AAAGGATATTCCGTATTTTAGTCGAATGAA
66 TT-A---TTTTAAGAAAACATGGACGAAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAA
38123417 AA
127 AA
* * *
38123419 GAACGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAGATATT
1 AAATGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATT
38123476 TCCTTATGTT
Statistics
Matches: 261, Mismatches: 43, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
124 1 0.00
125 62 0.24
126 10 0.04
128 26 0.10
129 33 0.13
130 106 0.41
131 1 0.00
133 16 0.06
134 6 0.02
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (128 bp):
AAATGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATT
TTATTTTAAGAAAACATGGACGAAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAA
Found at i:38124122 original size:15 final size:16
Alignment explanation
Indices: 38124110--38124139 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
38124100 GTATATAAGA
38124110 AAATT-TAAAATAAAC
1 AAATTATAAAATAAAC
38124125 AAATTATAAAATAAA
1 AAATTATAAAATAAA
38124140 ACAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATTATAAAATAAAC
Found at i:38125479 original size:89 final size:88
Alignment explanation
Indices: 38125379--38125576 Score: 279
Period size: 89 Copynumber: 2.2 Consensus size: 88
38125369 CCTGCTCCAT
* ** * *
38125379 TGCAACTTCAGGGAGATAAGGTTGGTAGCTAAAATTTGCTCCATAGCCGATACATGGAGATAAGA
1 TGCAACTTCAGGAAGATAAGACTAGTAGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
38125444 TCTGTAACTTTTCAGTCTACTTCC
66 TCTGTAA-TTTTCAGTCTACTTCC
* * *
38125468 TGCAACTTCAGGAAGATAAGACTAGTAGCTGAGATCTGCTCCATAGCTGATACATGGAGATAAGA
1 TGCAACTTCAGGAAGATAAGACTAGTAGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* **
38125533 TTTGTAATTTTCAGTCTGGTTCC
66 TCTGTAATTTTCAGTCTACTTCC
*
38125556 TGCAACTTCAAGAAGATAAGA
1 TGCAACTTCAGGAAGATAAGA
38125577 TTTGCTATCT
Statistics
Matches: 97, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
88 34 0.35
89 63 0.65
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (88 bp):
TGCAACTTCAGGAAGATAAGACTAGTAGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
TCTGTAATTTTCAGTCTACTTCC
Found at i:38125595 original size:89 final size:89
Alignment explanation
Indices: 38125415--38125864 Score: 325
Period size: 89 Copynumber: 5.1 Consensus size: 89
38125405 AGCTAAAATT
* * *
38125415 TGCTCCATAGCCGATACATGGAGATAAGATCTGTAACTTTTCAGTCTACTTCCTGCAACTTCAGG
1 TGCTCCATAGCTGATACATGGAGATAAGATTTGTAA-TTTTCAGTCTGCTTCCTGCAACTTCAGG
* * *
38125480 AAGATAAGACTAG-TAGC-TGAGATC
65 AAGATAAGACTTGCTATCTTCAG-TC
* *
38125504 TGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGTCTGGTTCCTGCAACTTCAAGA
1 TGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGA
*
38125569 AGATAAGATTTGCTATCTTCAGTC
66 AGATAAGACTTGCTATCTTCAGTC
* * * * *
38125593 TGCTCCACT-G-TAACTTCA-GAGAGATAAGACTTGCT-ATCTTCAGTCTGCTCCACTGCAACTT
1 TGCTCCA-TAGCTGA-TACATG-GAGATAAGATTTG-TAATTTTCAGTCTGCTTC-CTGCAACTT
* *
38125654 CAGGGAGATAAGGCTTGCTATCTTCAGTC
61 CAGGAAGATAAGACTTGCTATCTTCAGTC
* * * ** * ** *** * * *
38125683 TGCTCCACT-GC-AACTTCAAGGAGATAAGGCTGGTGGTTGAAAG-CTGC-TCTATAGCCGA-TA
1 TGCTCCA-TAGCTGA-TACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTC-CT-G-CAACTT
** * **
38125743 CATGG-AGATAAGACCCGCCA-CTTTTGATC
61 CA-GGAAGATAAGACTTGCTATCTTCAG-TC
* * *
38125772 TGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTTCGGTCTGCTTCCTGCAACTTCAGGA
1 TGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGA
*
38125836 AGATAAGACTTGCTATTTTCAGTC
66 AGATAAGACTTGCTATCTTCAGTC
38125860 TGCTC
1 TGCTC
38125865 TACTGCAACT
Statistics
Matches: 281, Mismatches: 59, Indels: 43
0.73 0.15 0.11
Matches are distributed among these distances:
87 4 0.01
88 71 0.25
89 128 0.46
90 77 0.27
91 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (89 bp):
TGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGA
AGATAAGACTTGCTATCTTCAGTC
Found at i:38125676 original size:90 final size:89
Alignment explanation
Indices: 38125434--38126295 Score: 286
Period size: 89 Copynumber: 9.7 Consensus size: 89
38125424 GCCGATACAT
* * * * * *
38125434 GGAGATAAGA-TCTGTAACTTTTCAGTCTACTTCCTGCAACTTCAGGAAGATAAGACTAG-TAGC
1 GGAGATAAGACT-TGTAA-TCTTCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTTGCTATC
* * * *
38125497 -TGAGATCTGCTCCA-TAGCTGA-TACAT
64 TTCAG-TCTGCTCCACT-GC-AACTTCAA
* * * * *
38125523 GGAGATAAGATTTGTAATTTTCAGTCTGGTTCCTGCAACTTCAAGAAGATAAGATTTGCTATCTT
1 GGAGATAAGACTTGTAATCTTCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTTGCTATCTT
*
38125588 CAGTCTGCTCCACTGTAACTTC-A
66 CAGTCTGCTCCACTGCAACTTCAA
* * *
38125611 GAGAGATAAGACTTGCT-ATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTTGCTAT
1 G-GAGATAAGACTTG-TAATCTTCAGTCTGCTCC-CTGCAACTTCAAGAAGATAAGACTTGCTAT
38125675 CTTCAGTCTGCTCCACTGCAACTTCAA
63 CTTCAGTCTGCTCCACTGCAACTTCAA
* * ** ** ** * * * * ** *
38125702 GGAGATAAGGCTGGTGGT-TGAAAG-CTGCTCTATAGCCGA-TACATGGAGATAAGACCCGCCA-
1 GGAGATAAGACTTGTAATCT-TCAGTCTGCTCCCT-G-CAACTTCAAGAAGATAAGACTTGCTAT
** * * *
38125763 CTTTTGATCTGCTCCA-TAGCCGA-TACAT
63 CTTCAG-TCTGCTCCACT-G-CAACTTCAA
* * * *
38125791 GGAGATAAGA-TCTGTAAT-TTCGGTCTGCTTCCTGCAACTTCAGGAAGATAAGACTTGCTATTT
1 GGAGATAAGACT-TGTAATCTTCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTTGCTATCT
*
38125854 TCAGTCTGCTCTACTGCAACTTC-A
65 TCAGTCTGCTCCACTGCAACTTCAA
* * ** * * * *
38125878 GAGAGATAAGACTTGTCATTTTC-GATCTGCTCTATAGCCGA-TACATGGAGATAAGA-TCTG-T
1 G-GAGATAAGACTTGTAATCTTCAG-TCTGCTCCCT-G-CAACTTCAAGAAGATAAGACT-TGCT
* *
38125939 AAATTTTCAGTCTGCTTC-CTGCAACTTC-A
61 --ATCTTCAGTCTGCTCCACTGCAACTTCAA
* ** ** * * * * * *
38125968 GGAAGATAAGACTAGT-GGCTAAAATCTGCTCCATAGCCGA-TACATAG-AGATAAGACTCGCCA
1 GG-AGATAAGACTTGTAATCTTCAGTCTGCTCCCT-G-CAACTTCA-AGAAGATAAGACTTGCTA
* * * *
38126030 T-TTCTGATCTGCTCCA-TAGCCGA-TACAT
62 TCTTCAG-TCTGCTCCACT-G-CAACTTCAA
* * * * * *
38126058 GGAGATAAGA-TCTATAA-CTTTTAGTCTACTTCCTGCAACTTCAGGAAGATAAGACTTGCTATT
1 GGAGATAAGACT-TGTAATC-TTCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTTGCTATC
38126121 TTCAGTCTGCTCCACTGCAACTTC-A
64 TTCAGTCTGCTCCACTGCAACTTCAA
* * * * * * * * *
38126146 GAGAGATAAGACTCGTCATTTTC-GATCTACTCCATAGTCGA-TACATGGAGATAAGA-TCTG-T
1 G-GAGATAAGACTTGTAATCTTCAG-TCTGCTCCCT-G-CAACTTCAAGAAGATAAGACT-TGCT
* *
38126207 AAATTTTCAGTCTGCTTC-CTGCAACTTCAA
61 --ATCTTCAGTCTGCTCCACTGCAACTTCAA
* * * * *
38126237 GAAGATAAGACTTGCT-ATCTTCAGTCTACTCCACTGCAACTTTAGGGAGATAAGACTTG
1 GGAGATAAGACTTG-TAATCTTCAGTCTGCTCC-CTGCAACTTCAAGAAGATAAGACTTG
38126296 TCATTTTCGA
Statistics
Matches: 582, Mismatches: 127, Indels: 127
0.70 0.15 0.15
Matches are distributed among these distances:
87 9 0.02
88 107 0.18
89 227 0.39
90 198 0.34
91 41 0.07
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (89 bp):
GGAGATAAGACTTGTAATCTTCAGTCTGCTCCCTGCAACTTCAAGAAGATAAGACTTGCTATCTT
CAGTCTGCTCCACTGCAACTTCAA
Found at i:38125711 original size:45 final size:45
Alignment explanation
Indices: 38125523--38126295 Score: 277
Period size: 45 Copynumber: 17.3 Consensus size: 45
38125513 GCTGATACAT
* * * *
38125523 GGAGATAAGATTTG-TAATTTTCAGTCTGGTTC-CTGCAACTTCAA
1 GGAGATAAGACTTGCT-ATCTTCAGTCTGCTCCACTGCAACTTCAA
* * *
38125567 GAAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTC-A
1 GGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
*
38125611 GAGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAG
1 G-GAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
*
38125657 GGAGATAAGGCTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
1 GGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
* * *** * * * *
38125702 GGAGATAAGGCTGGTGGT-T-GAAAG-CTGCTCTA-TAGCCGA-TACAT
1 GGAGATAAGACT--TGCTATCTTCAGTCTGCTCCACT-G-CAACTTCAA
** * ** * * *
38125746 GGAGATAAGACCCGCCA-CTTTTGATCTGCTCCA-TAGCCGA-TACAT
1 GGAGATAAGACTTGCTATCTTCAG-TCTGCTCCACT-G-CAACTTCAA
* *
38125791 GGAGATAAGA-TCTG-TAAT-TTCGGTCTGCTTC-CTGCAACTTC-A
1 GGAGATAAGACT-TGCT-ATCTTCAGTCTGCTCCACTGCAACTTCAA
* *
38125833 GGAAGATAAGACTTGCTATTTTCAGTCTGCTCTACTGCAACTTC-A
1 GG-AGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
* * * * *
38125878 GAGAGATAAGACTTG-TCATTTTC-GATCTGCTCTA-TAGCCGA-TACAT
1 G-GAGATAAGACTTGCT-ATCTTCAG-TCTGCTCCACT-G-CAACTTCAA
* *
38125924 GGAGATAAGA-TCTG-TAAATTTTCAGTCTGCTTC-CTGCAACTTC-A
1 GGAGATAAGACT-TGCT--ATCTTCAGTCTGCTCCACTGCAACTTCAA
* ** ** * * *
38125968 GGAAGATAAGACTAG-TGGCTAAAATCTGCTCCA-TAGCCGA-TACATA
1 GG-AGATAAGACTTGCTATCTTCAGTCTGCTCCACT-G-CAACTTCA-A
* * * * * *
38126014 -GAGATAAGACTCGCCAT-TTCTGATCTGCTCCA-TAGCCGA-TACAT
1 GGAGATAAGACTTGCTATCTTCAG-TCTGCTCCACT-G-CAACTTCAA
* * *
38126058 GGAGATAAGA--T-CTATAACTTTTAGTCTACTTC-CTGCAACTTC-A
1 GGAGATAAGACTTGCTAT--C-TTCAGTCTGCTCCACTGCAACTTCAA
*
38126101 GGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGCAACTTC-A
1 GG-AGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
* * * * * *
38126146 GAGAGATAAGACTCG-TCATTTTC-GATCTACTCCA-TAGTCGA-TACAT
1 G-GAGATAAGACTTGCT-ATCTTCAG-TCTGCTCCACT-G-CAACTTCAA
* *
38126192 GGAGATAAGA-TCTG-TAAATTTTCAGTCTGCTTC-CTGCAACTTCAA
1 GGAGATAAGACT-TGCT--ATCTTCAGTCTGCTCCACTGCAACTTCAA
* * * *
38126237 GAAGATAAGACTTGCTATCTTCAGTCTACTCCACTGCAACTTTAG
1 GGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
38126282 GGAGATAAGACTTG
1 GGAGATAAGACTTG
38126296 TCATTTTCGA
Statistics
Matches: 560, Mismatches: 101, Indels: 135
0.70 0.13 0.17
Matches are distributed among these distances:
42 8 0.01
43 31 0.06
44 132 0.24
45 336 0.60
46 44 0.08
47 9 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (45 bp):
GGAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAA
Found at i:38126166 original size:268 final size:266
Alignment explanation
Indices: 38125500--38126468 Score: 1095
Period size: 268 Copynumber: 3.6 Consensus size: 266
38125490 TAGTAGCTGA
* * *
38125500 GATCTGCTCCATAGCTGATACATGGAGATAAGATTTGTAATTTTCAGTCTGGTTCCTGCAACTTC
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTT-AGTCTGCTTCCTGCAACTTC
* * *
38125565 AAGAAGATAAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTCAGAGAGATAAGACTTG-CTA
65 AGGAAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTC-A
* * * * * * *
38125629 TCTTC-AGTCTGCTCCACT-G-CAACTTCAGGGAGATAAG-GCTTGCT--ATCTTCAGTCTGCTC
129 TCTTCGA-TCTACTCCA-TAGCCGA-TACATGGAGATAAGATC-TG-TAAATTTTCAGTCTGCTT
* * * * * * *
38125688 CACTGCAACTTCAAGG-AGATAAGGCTGGTGGTTGAAAGCTGCTCTATAGCCGATACATGGAGAT
189 C-CTGCAACTTC-AGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGAT
*
38125752 AAGACCCGCCACTTTT
252 AAGACTCGCCA-TTTT
**
38125768 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTCGGTCTGCTTCCTGCAACTTCA
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTAGTCTGCTTCCTGCAACTTCA
* * *
38125833 GGAAGATAAGACTTGCTATTTTCAGTCTGCTCTACTGCAACTTCAGAGAGATAAGACTTGTCATT
66 GGAAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTCATC
* *
38125898 TTCGATCTGCTCTATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAA
131 TTCGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAA
38125963 CTTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGC
196 CTTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGC
38126028 CATTTCT
261 CATTT-T
* *
38126035 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTATAACTTTTAGTCTACTTCCTGCAACTTC
1 GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA-TTTTAGTCTGCTTCCTGCAACTTC
* *
38126100 AGGAAGATAAGACTTGCTATTTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTCGTCAT
65 AGGAAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTCAT
* *
38126165 TTTCGATCTACTCCATAGTCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCA
130 CTTCGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCA
* * ** ** * * *
38126230 ACTTCAAGAAGATAAGACTTGCTATCTTCAGTCTACTCCACT-G-C-A-ACTTTAGGGAGATAAG
195 ACTTCAGGAAGATAAGACTAG-TGGCTAAAATCTGCTCCA-TAGCCGATAC-ATA--GAGATAAG
* *
38126291 ACTTGTCATTTT
255 ACTCGCCATTTT
* * * * *
38126303 CGATCTGCTCTATAGCCGGTATATGAAGATAAGATCTGTAACTTTTTGGTCTGCTTCCTGCAACT
1 -GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAA--TTTTAGTCTGCTTCCTGCAACT
* * ** * * * *
38126368 TCAGGAAGATAAGACCTG-TATCTCCAACCTGCT-CTCTGCAACTTCAGGGAGATAAGGCTGGT-
63 TCAGGAAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTC
** **
38126430 GGCTTAAATCTACTCCATAGCCGATACATGGAGATAAGA
128 ATCTTCGATCTACTCCATAGCCGATACATGGAGATAAGA
38126469 CCCGCCATTT
Statistics
Matches: 615, Mismatches: 69, Indels: 35
0.86 0.10 0.05
Matches are distributed among these distances:
266 10 0.02
267 239 0.39
268 252 0.41
269 76 0.12
270 38 0.06
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (266 bp):
GATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTAGTCTGCTTCCTGCAACTTCA
GGAAGATAAGACTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTTGTCATC
TTCGATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAAATTTTCAGTCTGCTTCCTGCAA
CTTCAGGAAGATAAGACTAGTGGCTAAAATCTGCTCCATAGCCGATACATAGAGATAAGACTCGC
CATTTT
Found at i:38126691 original size:64 final size:64
Alignment explanation
Indices: 38126584--38126707 Score: 180
Period size: 64 Copynumber: 1.9 Consensus size: 64
38126574 TATATCTATA
* *
38126584 CTTATGCCAAATAACTAGGATGCTATGATCGAAATAATCCAAATGCTCCTACCTAGATGTGATG
1 CTTATGCCAAATAACTAGGATGCTATGATCGAAAGAATCCAAATGCTCCTAACTAGATGTGATG
* *
38126648 CTTATGTCAAATAATTAGGATGCTATGATC-AAGACGAAT-CAAATGCTCCTAACTAGATGT
1 CTTATGCCAAATAACTAGGATGCTATGATCGAA-A-GAATCCAAATGCTCCTAACTAGATGT
38126708 AGTATGAATG
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
63 2 0.04
64 49 0.91
65 3 0.06
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (64 bp):
CTTATGCCAAATAACTAGGATGCTATGATCGAAAGAATCCAAATGCTCCTAACTAGATGTGATG
Found at i:38137976 original size:130 final size:127
Alignment explanation
Indices: 38137620--38138057 Score: 472
Period size: 130 Copynumber: 3.4 Consensus size: 127
38137610 AACGGTAAAT
* * * ** *
38137620 CGAAACCCAGCACGATTGGGCACGATTTATCGAA-TTTCCAAATACGAAACATTGCCTCATTTTA
1 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTA
* * * ** * *
38137684 ATTTGAGAAAACATGGACGAAACTTCAAAAGGATATTTTGTATTTTAGTCGAATG-GAAAAT
66 ATTTTAAAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAAAAA
* * * * ** *
38137745 TGAAGCCCAGCACGATTGGGCACGA-CTCCCCAAACT-TCCAAGCACGAAATATTGCCTCGTTTT
1 CGAAACCCAGCACGATTGGGCACGATCT-CTCAAACTCCCCAAATACGAAATATTGCCTCATTTT
* * * * *
38137808 -ATTTTAAGAAAACGTGGATGAAAATTTCAAAAAAGGATATTCCATATTTTAATCGAACGAAAAA
65 AATTTTAA-AAAACATGGACG-AAATTTC--AAAAGGATATTCCGTATTTTAGTCGAATGAAAAA
38137872 AA
126 AA
*
38137874 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCCCATTTTA
1 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTA
* * *
38137939 ATTTTTTTAAAAAAAATGGACGAAATTTCCAAAGGATATTCCGTATTTTAGTCGAATGAAAAGAA
66 A---TTTTAAAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAAAAA
* * * *
38138004 CGAAACCTAGCCCGATTGGGCACGATCTCTCAAACTCCCTAAATACGAGATATT
1 CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATT
38138058 TCCTTATGTT
Statistics
Matches: 258, Mismatches: 42, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
124 6 0.02
125 59 0.23
126 7 0.03
128 24 0.09
129 34 0.13
130 105 0.41
131 1 0.00
132 7 0.03
133 9 0.03
134 6 0.02
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.26
Consensus pattern (127 bp):
CGAAACCCAGCACGATTGGGCACGATCTCTCAAACTCCCCAAATACGAAATATTGCCTCATTTTA
ATTTTAAAAAACATGGACGAAATTTCAAAAGGATATTCCGTATTTTAGTCGAATGAAAAAAA
Found at i:38148119 original size:23 final size:23
Alignment explanation
Indices: 38148093--38148137 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
38148083 CAAACCTGTA
*
38148093 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
38148116 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
38148138 TTGAATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:38149016 original size:22 final size:23
Alignment explanation
Indices: 38148973--38149025 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
38148963 TTTTCGATTC
* *
38148973 ATATAATCATATTTAATGTATTAT
1 ATATTATCATATTT-ATCTATTAT
*
38148997 ATATTATCATATTT-TCTATTTT
1 ATATTATCATATTTATCTATTAT
*
38149019 TTATTAT
1 ATATTAT
38149026 TTTTCATGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 12 0.48
24 13 0.52
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (23 bp):
ATATTATCATATTTATCTATTAT
Found at i:38151073 original size:25 final size:26
Alignment explanation
Indices: 38151045--38151095 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
38151035 CTTATTTCAT
38151045 TAAAT-AAAAAAATTTAAAAAAATAA
1 TAAATCAAAAAAATTTAAAAAAATAA
* * *
38151070 TAAATCAAATATATTTAAAAACATAA
1 TAAATCAAAAAAATTTAAAAAAATAA
38151096 AACAAATATT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (26 bp):
TAAATCAAAAAAATTTAAAAAAATAA
Found at i:38151210 original size:15 final size:16
Alignment explanation
Indices: 38151180--38151212 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
38151170 AAATAGTTAT
38151180 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
38151197 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
38151212 A
1 A
38151213 AATATATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:38152259 original size:22 final size:23
Alignment explanation
Indices: 38152234--38152279 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
38152224 CAACCAAACC
38152234 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
38152256 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
38152279 A
1 A
38152280 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:38152285 original size:23 final size:23
Alignment explanation
Indices: 38152241--38152285 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
38152231 ACCAATTCAA
*
38152241 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
38152264 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
38152286 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:38152716 original size:2 final size:2
Alignment explanation
Indices: 38152709--38152747 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
38152699 TCCATTTCCT
38152709 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
38152748 TTTCATATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:38156637 original size:3 final size:3
Alignment explanation
Indices: 38156629--38156734 Score: 153
Period size: 3 Copynumber: 35.7 Consensus size: 3
38156619 CTTTATTAAA
* * * *
38156629 TAT TAT TAT T-T CTAA TAT TAT TAA TAT TAT CAC TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
38156674 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
38156722 TAT TAT TA- TAT TA
1 TAT TAT TAT TAT TA
38156735 GTGTATATTT
Statistics
Matches: 92, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
2 3 0.03
3 89 0.97
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:38156921 original size:144 final size:145
Alignment explanation
Indices: 38156701--38156981 Score: 426
Period size: 144 Copynumber: 1.9 Consensus size: 145
38156691 TTATTATTAT
* * * *
38156701 TATTATTATTATTATTATTATTATTATTATATTAGTGTATATTTTTTTATTGTATATGTATATGT
1 TATTATTACTATTATCATTATTATTATTATATTAGTGTATATTTTTTTATTATATATGTATACGT
* * *
38156766 ATATATATTTATATATAGTATTATTTTTTATTACTTTATTTT-AA-TATT-TT-TATTATATTTG
66 ATATATATTTATACATAGTACTATTTTTAATTACTTTATTTTAAAGTATTATTATATTATATTTG
38156827 CTTTTTGTATTTCAA
131 CTTTTTGTATTTCAA
*
38156842 TATTATTACTATTATCATTATTATTATTAATATTAGTGTATATTTTTATTATATATGTATGTATA
1 TATTATTACTATTATCATTATTATTATT-ATATTAGTGTATATTTTT-TTAT-TATATATGTATA
38156907 CGTATATATATTTATACATAGTACTATTTTTAATTACTTTATTTTAAAGTTATTATTATATTATA
63 CGTATATATATTTATACATAGTACTATTTTTAATTACTTTATTTTAAAG-TATTATTATATTATA
38156972 TTTGCTTTTT
127 TTTGCTTTTT
38156982 TTTTTGTATT
Statistics
Matches: 124, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
141 26 0.21
142 18 0.15
143 4 0.03
144 51 0.41
145 2 0.02
147 4 0.03
148 2 0.02
149 17 0.14
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.60
Consensus pattern (145 bp):
TATTATTACTATTATCATTATTATTATTATATTAGTGTATATTTTTTTATTATATATGTATACGT
ATATATATTTATACATAGTACTATTTTTAATTACTTTATTTTAAAGTATTATTATATTATATTTG
CTTTTTGTATTTCAA
Found at i:38159690 original size:18 final size:18
Alignment explanation
Indices: 38159667--38159949 Score: 128
Period size: 18 Copynumber: 15.3 Consensus size: 18
38159657 GAATAATTAT
38159667 TTATTCAGTAACAGTCAG
1 TTATTCAGTAACAGTCAG
* * *
38159685 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAGTCAG
* * * **
38159703 TTGTTCAATAATAACCAG
1 TTATTCAGTAACAGTCAG
*
38159721 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A--G-TCAG
* *
38159747 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
38159765 TTATTCAGTAA-AATAAG
1 TTATTCAGTAACAGTCAG
* *
38159782 ATATTCAGTAACTA-TAAAG
1 TTATTCAGTAAC-AGT-CAG
*
38159801 TTATTCAGTAGCAGTCA-
1 TTATTCAGTAACAGTCAG
* *
38159818 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAGTCAG
* *
38159837 TTATTCAGTAA-TGATCAA
1 TTATTCAGTAACAG-TCAG
* * *
38159855 TTATTCAGTAATATTCAA
1 TTATTCAGTAACAGTCAG
38159873 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAGTC-AG
* * *
38159891 ATATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAG
* *
38159909 TTA-TCTGATAACAGTCAA
1 TTATTCAG-TAACAGTCAG
* *
38159927 TTATTCAGTAATAATCAG
1 TTATTCAGTAACAGTCAG
38159945 TTATT
1 TTATT
38159950 TTATATCTTT
Statistics
Matches: 199, Mismatches: 46, Indels: 40
0.70 0.16 0.14
Matches are distributed among these distances:
17 18 0.09
18 143 0.72
19 22 0.11
21 2 0.01
22 1 0.01
23 2 0.01
26 11 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAG
Found at i:38159807 original size:19 final size:17
Alignment explanation
Indices: 38159765--38159810 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
38159755 TAACAGTCAA
38159765 TTATTCAGTAAAATAAG
1 TTATTCAGTAAAATAAG
* *
38159782 ATATTCAGTAACTATAAAG
1 TTATTCAGTAA-AAT-AAG
38159801 TTATTCAGTA
1 TTATTCAGTA
38159811 GCAGTCATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 10 0.42
18 2 0.08
19 12 0.50
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (17 bp):
TTATTCAGTAAAATAAG
Found at i:38159816 original size:54 final size:54
Alignment explanation
Indices: 38159746--38159883 Score: 156
Period size: 54 Copynumber: 2.6 Consensus size: 54
38159736 CAATTGATCG
*
38159746 GTTATCCAGTAACAGTCAATTATTCAGTAAAATAAGATATTCAGTAACT-ATAAA
1 GTTATTCAGTAACAGTCAATTATTCAGTAAAATAAGATATTCAGTAA-TGATAAA
* * * * *
38159800 GTTATTCAGTAGCAGTC-ATTCATTCAGTGACAATCAGTTATTCAGTAATGATCAA
1 GTTATTCAGTAACAGTCAATT-ATTCAGT-AAAATAAGATATTCAGTAATGATAAA
* *
38159855 -TTATTCAGTAATATTCAATTATTCAGTAA
1 GTTATTCAGTAACAGTCAATTATTCAGTAA
38159884 CAGTCTAATA
Statistics
Matches: 70, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
53 4 0.06
54 43 0.61
55 23 0.33
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (54 bp):
GTTATTCAGTAACAGTCAATTATTCAGTAAAATAAGATATTCAGTAATGATAAA
Found at i:38160124 original size:6 final size:6
Alignment explanation
Indices: 38160113--38160137 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
38160103 ACAAATCCGG
38160113 AACAGT AACAGT AACAGT AACAGT A
1 AACAGT AACAGT AACAGT AACAGT A
38160138 TTCAACACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (6 bp):
AACAGT
Found at i:38160172 original size:45 final size:45
Alignment explanation
Indices: 38160117--38160410 Score: 354
Period size: 45 Copynumber: 6.3 Consensus size: 45
38160107 ATCCGGAACA
* * * **
38160117 GTAACAGTAACAGTAACAGTATTCAACACAAAAAGTGTTGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
38160162 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCA
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* * * *
38160207 GTAACGGTAATAGTAACTATATTCGACACACACAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* * *
38160252 GTAACAATAGCAGTAACAATATTCGACACACAAAGTGCCGAATTG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
38160297 GTAACAGTAACAGTAACCATATTCGACATATTCGACACACAAAGTGTCGAATCG
1 GTAACAGTAACAGT----A-A--C-A-ATATTCGACACACAAAGTGCCGAATCG
*
38160351 GTAACAGTAGCAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
38160396 GTAACAGTAGCAGTA
1 GTAACAGTAACAGTA
38160411 GCGGTAACAG
Statistics
Matches: 216, Mismatches: 24, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
45 170 0.79
46 1 0.00
47 1 0.00
49 2 0.01
50 2 0.01
52 1 0.00
53 1 0.00
54 38 0.18
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.20
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:38160333 original size:54 final size:54
Alignment explanation
Indices: 38160270--38160378 Score: 182
Period size: 54 Copynumber: 2.0 Consensus size: 54
38160260 AGCAGTAACA
* *
38160270 ATATTCGACACACAAAGTGCCGAATTGGTAACAGTAACAGTAACCATATTCGAC
1 ATATTCGACACACAAAGTGCCGAATCGGTAACAGTAACAGTAACAATATTCGAC
* *
38160324 ATATTCGACACACAAAGTGTCGAATCGGTAACAGTAGCAGTAACAATATTCGAC
1 ATATTCGACACACAAAGTGCCGAATCGGTAACAGTAACAGTAACAATATTCGAC
38160378 A
1 A
38160379 CACAAAGTGC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.22
Consensus pattern (54 bp):
ATATTCGACACACAAAGTGCCGAATCGGTAACAGTAACAGTAACAATATTCGAC
Found at i:38160336 original size:99 final size:99
Alignment explanation
Indices: 38160225--38160410 Score: 327
Period size: 99 Copynumber: 1.9 Consensus size: 99
38160215 AATAGTAACT
*
38160225 ATATTCGACACACACAGTGCCGAATCGGTAACAATAGCAGTAACAATATTCGACACACAAAGTGC
1 ATATTCGACACACAAAGTGCCGAATCGGTAACAATAGCAGTAACAATATTCGACACACAAAGTGC
*
38160290 CGAATTGGTAACAGTAACAGTAACCATATTCGAC
66 CGAATCGGTAACAGTAACAGTAACCATATTCGAC
* *
38160324 ATATTCGACACACAAAGTGTCGAATCGGTAACAGTAGCAGTAACAATATTCGACACACAAAGTGC
1 ATATTCGACACACAAAGTGCCGAATCGGTAACAATAGCAGTAACAATATTCGACACACAAAGTGC
*
38160389 CGAATCGGTAACAGTAGCAGTA
66 CGAATCGGTAACAGTAACAGTA
38160411 GCGGTAACAG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
99 82 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (99 bp):
ATATTCGACACACAAAGTGCCGAATCGGTAACAATAGCAGTAACAATATTCGACACACAAAGTGC
CGAATCGGTAACAGTAACAGTAACCATATTCGAC
Found at i:38160817 original size:5 final size:5
Alignment explanation
Indices: 38160806--38160852 Score: 67
Period size: 5 Copynumber: 9.2 Consensus size: 5
38160796 AATTAATCAT
* *
38160806 AATTC CATTC CATTC AATTC AATTC AATTC AATTC AATTC AAATTC A
1 AATTC AATTC AATTC AATTC AATTC AATTC AATTC AATTC -AATTC A
38160853 CTTTTCCACT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
5 34 0.87
6 5 0.13
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.38
Consensus pattern (5 bp):
AATTC
Found at i:38161043 original size:29 final size:30
Alignment explanation
Indices: 38160985--38161044 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
38160975 CATATTCATA
* *
38160985 ATTTATTTTATTTTTATTCAATTCATATTT
1 ATTTATTTTATTTTTATCCAATTCAAATTT
*
38161015 ATTTA-TTTATTTATTGTCCAA-TCAAATTT
1 ATTTATTTTATTT-TTATCCAATTCAAATTT
38161044 A
1 A
38161045 AAATCACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTTATTTTATTTTTATCCAATTCAAATTT
Found at i:38162462 original size:18 final size:18
Alignment explanation
Indices: 38162441--38162485 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
38162431 TCTGTTTCGC
38162441 TCCTTCTCTGTTTCTTTT
1 TCCTTCTCTGTTTCTTTT
38162459 TCCTTCTCTGTTTCTTTT
1 TCCTTCTCTGTTTCTTTT
*
38162477 TCTTTCTCT
1 TCCTTCTCT
38162486 CTTTTTCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.00, C:0.29, G:0.04, T:0.67
Consensus pattern (18 bp):
TCCTTCTCTGTTTCTTTT
Found at i:38162513 original size:2 final size:2
Alignment explanation
Indices: 38162506--38162538 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
38162496 TGTTTTACTT
38162506 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
38162539 ATAACAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:38162690 original size:16 final size:14
Alignment explanation
Indices: 38162663--38162711 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 14
38162653 ATTTTACATT
38162663 TATTTATCATATAAA
1 TATTTAT-ATATAAA
*
38162678 TATATTATAATATAAT
1 TAT-TTAT-ATATAAA
38162694 TATTTATATAATAAA
1 TATTTATAT-ATAAA
38162709 TAT
1 TAT
38162712 CTTTCACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 2 0.07
15 14 0.48
16 13 0.45
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TATTTATATATAAA
Found at i:38179117 original size:38 final size:39
Alignment explanation
Indices: 38178994--38179131 Score: 154
Period size: 40 Copynumber: 3.5 Consensus size: 39
38178984 TCGAATGATG
* *
38178994 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGC-AAGTTACTAAA
* * * * *
38179034 TCCGGACTAGGAT-CCGAAGGCATTCGTGCGAGTTAATAAA
1 TCCGGGCTAAG-TCCCGAAGGC-TTTGTGCAAGTTACTAAA
38179074 TCCGGGCTAA-TCCCGAAGGCTTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAGTTACTAAA
* *
38179112 CCCGGGTTAAGTCCCGAAGG
1 TCCGGGCTAAGTCCCGAAGG
38179132 TATTCGTGCA
Statistics
Matches: 80, Mismatches: 14, Indels: 9
0.78 0.14 0.09
Matches are distributed among these distances:
38 24 0.30
39 17 0.21
40 32 0.40
41 7 0.09
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCAAGTTACTAAA
Found at i:38179159 original size:78 final size:79
Alignment explanation
Indices: 38178994--38179145 Score: 182
Period size: 78 Copynumber: 1.9 Consensus size: 79
38178984 TCGAATGATG
* * *
38178994 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATATCCGGACTAGGATCCGAAGGCATTC
1 TCCGGGCTAA-TCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTC
* * *
38179059 GTGCGAGTTAATAAA
65 GTGCAAATCAATAAA
* ** *
38179074 TCCGGGCTAATCCCGAAGGCTTTGTGC-AAGTTACTAAACCCGGGTTAAG-TCCCGAAGGTATTC
1 TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGAT-CCGAAGGCATTC
38179137 GTGCAAATC
65 GTGCAAATC
38179146 GCTATAACCG
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
77 1 0.02
78 33 0.54
79 17 0.28
80 10 0.16
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAATCCCGAAGGCTTTGTGCTAAGTGACTAAACCCGGACTAAGATCCGAAGGCATTCG
TGCAAATCAATAAA
Found at i:38181205 original size:77 final size:77
Alignment explanation
Indices: 38181103--38181271 Score: 250
Period size: 77 Copynumber: 2.2 Consensus size: 77
38181093 TTGGTATCCT
* * * *
38181103 GATATTTT-TATTTCTGTTTTTCAAAACAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 GATATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGG
* *
38181167 GTCACGCACCGA
66 GCCACACACCGA
* *
38181179 GGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTTGG
1 GATATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGG
*
38181244 GCCACATACCGA
66 GCCACACACCGA
38181256 GATATTTTCAATTTCT
1 GATATTTTCAATTTCT
38181272 GTTTCTAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
76 7 0.09
77 75 0.91
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (77 bp):
GATATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGACCCTCGG
GCCACACACCGA
Found at i:38181583 original size:77 final size:77
Alignment explanation
Indices: 38181287--38181587 Score: 462
Period size: 79 Copynumber: 3.9 Consensus size: 77
38181277 TAATTTCTGC
* * *
38181287 TTTTCAAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATC
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
*
38181352 TTTAAT-TCCTAT
66 TTTAGTCT-CTAT
*
38181364 TTTTC-AAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
*
38181428 TTTAGTCTTTAT
66 TTTAGTCTCTAT
38181440 TTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA
1 TTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA
*
38181505 TTTTTAGTCTCTGT
64 TTTTTAGTCTCTAT
* * * *
38181519 TTTTCAAAAAAATCAACTCATATTGTGATAGGTGAGTTGAGCCTCGGGTCACACACTGATGTATT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
38181584 TTTA
66 TTTA
38181588 ATTTTTTTTA
Statistics
Matches: 207, Mismatches: 13, Indels: 8
0.91 0.06 0.04
Matches are distributed among these distances:
76 68 0.33
77 66 0.32
79 73 0.35
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.34
Consensus pattern (77 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
TTTAGTCTCTAT
Found at i:38183300 original size:3 final size:3
Alignment explanation
Indices: 38183292--38183750 Score: 287
Period size: 3 Copynumber: 152.7 Consensus size: 3
38183282 CTTTATTAAA
38183292 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
38183340 TAT TAT TAT TAT TAT TAT TAT TAT CAC TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
38183388 TAT TAT TAT TAGT GTA- TAT TTT TAT TGT ATAT GTA- TAT GTA- TAT
1 TAT TAT TAT TA-T -TAT TAT TAT TAT TAT -TAT -TAT TAT -TAT TAT
* * *
38183432 ATAT T-T ATAT ATAG TAT TAT T-T T-T TAT TAC T-T TAT T-T TAA TAT
1 -TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* ** * * *
38183475 TTT TAT TA- TAT T-T GCT T-T TTT GTAT T-T CAA TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
38183517 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
38183564 TAT TAT TAT ATAT TAAT GTA- TAT TTT TGAT TGT ATAT GTA- TAT GTA-
1 TAT TAT TAT -TAT T-AT -TAT TAT TAT T-AT TAT -TAT -TAT TAT -TAT
* * *
38183610 TAT ATAT T-T ATAT ATAG TAT TACT TTT TAT TACT T-T T-T TAA TAT
1 TAT -TAT TAT -TAT -TAT TAT TA-T TAT TAT TA-T TAT TAT TAT TAT
* ** * * * * * * *
38183654 TTT TAT TA- TAT T-T GCT TCT TCT TTT TTT GTAT T-T CAA TAT GAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
* *
38183697 CAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
38183745 ATAT TA
1 -TAT TA
38183751 ATGTATATTT
Statistics
Matches: 367, Mismatches: 50, Indels: 78
0.74 0.10 0.16
Matches are distributed among these distances:
2 37 0.10
3 281 0.77
4 46 0.13
5 3 0.01
ACGTcount: A:0.31, C:0.03, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:38183900 original size:143 final size:139
Alignment explanation
Indices: 38183718--38184147 Score: 583
Period size: 143 Copynumber: 3.1 Consensus size: 139
38183708 TTATTATTAT
* *
38183718 TATTATTATTATTATTATTATTATTATATATTA-ATGTATATTTTTTATTGTATATGTATATGTA
1 TATTACTATTATTATTA-TATTATTATATATTAGA-GTATATTTTTTATTATATATGTATATGTA
38183782 TATATATTTATATATAGTATTA-TTTTTATTACTTTATTTTAATACTTTTATTATATTTGCTTTT
64 TATATATTTATATATAGTATTATTTTTTATTACTTTATTTTAATA-TTTTATTATATTTGC--TT
38183846 TTTGTATTTCAATA
126 TTTGTATTTCAATA
38183860 TGATTACTATTATTATTATCATTATTATATATTAGAGTATATTTTTTATTATATATGTATATGTA
1 T-ATTACTATTATTATTAT-ATTATTATATATTAGAGTATATTTTTTATTATATATGTATATGTA
* *
38183925 TATATA-TTATATATAGTATTATTTTTTATTACTTTGTTTTAATATTTTATTATATTGGCTTTTT
64 TATATATTTATATATAGTATTATTTTTTATTACTTTATTTTAATATTTTATTATATTTGCTTTTT
38183989 GTATTTC-A-A
129 GTATTTCAATA
* * * * * *
38183998 TA-T--TATTACTA-T-TATTATTATATATTAGTGTATACTTTTTCTTATATACGTATACGTATA
1 TATTACTATTATTATTATATTATTATATATTAGAGTATATTTTTTATTATATATGTATATGTATA
* *
38184058 TGTATATTTATCTATAGTATTATTTTTTATTATTTTATTTTAATATTTTTATTATATTTGCTTTT
66 --TATATTTATATATAGTATTATTTTTTATTACTTTATTTTAATA-TTTTATTATATTTGCTTTT
38184123 TGTATTTCAATA
128 TGTATTTCAATA
38184135 TTATTACTATTAT
1 -TATTACTATTAT
38184148 CTAGAGGTGA
Statistics
Matches: 259, Mismatches: 15, Indels: 29
0.85 0.05 0.10
Matches are distributed among these distances:
131 42 0.16
132 1 0.00
133 5 0.02
134 42 0.16
135 26 0.10
136 2 0.01
137 2 0.01
138 4 0.02
139 2 0.01
140 12 0.05
141 5 0.02
142 31 0.12
143 84 0.32
144 1 0.00
ACGTcount: A:0.30, C:0.04, G:0.06, T:0.60
Consensus pattern (139 bp):
TATTACTATTATTATTATATTATTATATATTAGAGTATATTTTTTATTATATATGTATATGTATA
TATATTTATATATAGTATTATTTTTTATTACTTTATTTTAATATTTTATTATATTTGCTTTTTGT
ATTTCAATA
Found at i:38184139 original size:135 final size:131
Alignment explanation
Indices: 38183867--38184147 Score: 427
Period size: 131 Copynumber: 2.1 Consensus size: 131
38183857 ATATGATTAC
* * * * *
38183867 TATTATTATTATCATTATTATATATTAGAGTATATTTTTTATTATATATGTATATGTATATATAT
1 TATTATTACTATTATTATTATATATTAGAGTATACTTTTTATTATATACGTATACGTATATATAT
*
38183932 TATATATAGTATTATTTTTTATTACTTTGTTTTAATATTTTATTATATTGGCTTTTTGTATTTCA
66 TATATATAGTATTATTTTTTATTACTTTATTTTAATATTTTATTATATTGGCTTTTTGTATTTCA
38183997 A
131 A
* *
38183998 TATTATTACTATTATTATTATATATTAGTGTATACTTTTTCTTATATACGTATACGTATATGTAT
1 TATTATTACTATTATTATTATATATTAGAGTATACTTTTTATTATATACGTATACGTATA--TAT
* * *
38184063 ATTTATCTATAGTATTATTTTTTATTATTTTATTTTAATATTTTTATTATATTTGCTTTTTGTAT
64 A-TTATATATAGTATTATTTTTTATTACTTTATTTTAATA-TTTTATTATATTGGCTTTTTGTAT
38184128 TTCAA
127 TTCAA
38184133 TATTATTACTATTAT
1 TATTATTACTATTAT
38184148 CTAGAGGTGA
Statistics
Matches: 135, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
131 53 0.39
133 4 0.03
134 35 0.26
135 43 0.32
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.60
Consensus pattern (131 bp):
TATTATTACTATTATTATTATATATTAGAGTATACTTTTTATTATATACGTATACGTATATATAT
TATATATAGTATTATTTTTTATTACTTTATTTTAATATTTTATTATATTGGCTTTTTGTATTTCA
A
Found at i:38184401 original size:12 final size:12
Alignment explanation
Indices: 38184386--38184414 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
38184376 ATATATTTAA
38184386 AAATATTAAAAT
1 AAATATTAAAAT
38184398 AAATATTAAAAT
1 AAATATTAAAAT
38184410 AAATA
1 AAATA
38184415 AAAATAATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATATTAAAAT
Found at i:38184401 original size:24 final size:25
Alignment explanation
Indices: 38184343--38184403 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
38184333 CTTATTTCAT
* *
38184343 TAAATAAAAAAATTTAAAAATATAA
1 TAAATAAATATATTTAAAAATATAA
*
38184368 TAAATCAAATATATTTAAAAATATTA
1 TAAAT-AAATATATTTAAAAATATAA
38184394 -AAATAAATAT
1 TAAATAAATAT
38184404 TAAAATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.19
25 9 0.28
26 17 0.53
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
TAAATAAATATATTTAAAAATATAA
Found at i:38184423 original size:21 final size:20
Alignment explanation
Indices: 38184343--38184429 Score: 61
Period size: 21 Copynumber: 4.0 Consensus size: 20
38184333 CTTATTTCAT
38184343 TAAATAAAAAAAT-TTAAAAA
1 TAAATAAAAAAATATT-AAAA
38184363 TATAATAAATCAAATATATTTAAAA
1 TA-AATAAA--AAA-ATA-TTAAAA
*
38184388 -ATATTAAAATAAATATTAAAA
1 TA-AATAAAA-AAATATTAAAA
*
38184409 TAAATAAAAATAATACTAAAA
1 TAAATAAAAA-AATATTAAAA
38184430 CAATTTTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
20 3 0.05
21 27 0.49
22 5 0.09
23 5 0.09
24 9 0.16
25 4 0.07
26 2 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (20 bp):
TAAATAAAAAAATATTAAAA
Found at i:38184509 original size:15 final size:16
Alignment explanation
Indices: 38184479--38184520 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
38184469 AAATAGTTAT
38184479 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
38184496 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
*
38184511 A-AAAAAATTA
1 ATTAAAAATTA
38184521 TATATTAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 5 0.22
15 10 0.43
17 8 0.35
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:38192557 original size:18 final size:20
Alignment explanation
Indices: 38192517--38192559 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
38192507 TTTCAGGATG
* *
38192517 TTAACATTTTTAAATTTACA
1 TTAACATTTTTAAATTAAAA
38192537 TTAACA-TTTT-AATTAAAA
1 TTAACATTTTTAAATTAAAA
38192555 TTAAC
1 TTAAC
38192560 TAATAATATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 11 0.52
19 4 0.19
20 6 0.29
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (20 bp):
TTAACATTTTTAAATTAAAA
Found at i:38193956 original size:2 final size:2
Alignment explanation
Indices: 38193949--38193976 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
38193939 AAGAGAAAAT
38193949 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
38193977 TATCAAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:38214537 original size:29 final size:29
Alignment explanation
Indices: 38214505--38214563 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
38214495 TTTTAGTTTT
38214505 AAATAAATTA-TATTTATTAAATTCATTAA
1 AAATAAA-TAGTATTTATTAAATTCATTAA
*
38214534 AAATAAATAGTCTTTATTAAATTCATTAA
1 AAATAAATAGTATTTATTAAATTCATTAA
38214563 A
1 A
38214564 TTAAGTTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (29 bp):
AAATAAATAGTATTTATTAAATTCATTAA
Found at i:38218058 original size:24 final size:24
Alignment explanation
Indices: 38218043--38218094 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
38218033 AATCAAATTC
38218043 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
38218067 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
38218091 AAAT
1 AAAT
38218095 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:38219176 original size:20 final size:19
Alignment explanation
Indices: 38219134--38219177 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
38219124 AAAAAATCAG
* *
38219134 AAAAATTATTAGAAATTGT
1 AAAAATTATTAGAAATAGC
38219153 AAAATATTATTAGAAATAGC
1 AAAA-ATTATTAGAAATAGC
38219173 AAAAA
1 AAAAA
38219178 ATGTTATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 5 0.23
20 17 0.77
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (19 bp):
AAAAATTATTAGAAATAGC
Found at i:38220805 original size:2 final size:2
Alignment explanation
Indices: 38220794--38220829 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
38220784 ATATTTGTAA
38220794 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
38220830 AAATTCTTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38220978 original size:54 final size:53
Alignment explanation
Indices: 38220917--38221023 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 53
38220907 TAGCTATCAA
38220917 TACAATACTAACTATCTTCATCAGAATACCATTCAAACTTTTAACTATTTTCAT
1 TACAATACTAACTATCTTCATCAGAATACCATTCAAAC-TTTAACTATTTTCAT
**
38220971 TACAATACTAACTATCTTCATTTGAATACCATTCAAACTTTAACTATTTTCAT
1 TACAATACTAACTATCTTCATCAGAATACCATTCAAACTTTAACTATTTTCAT
38221024 CTGAATACCA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 15 0.29
54 36 0.71
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.40
Consensus pattern (53 bp):
TACAATACTAACTATCTTCATCAGAATACCATTCAAACTTTAACTATTTTCAT
Found at i:38221023 original size:32 final size:32
Alignment explanation
Indices: 38220979--38221042 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
38220969 ATTACAATAC
*
38220979 TAACTATCTTCATTTGAATACCATTCAAACTT
1 TAACTATCTTCATCTGAATACCATTCAAACTT
*
38221011 TAACTATTTTCATCTGAATACCATTCAAACTT
1 TAACTATCTTCATCTGAATACCATTCAAACTT
38221043 GAACAAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.03, T:0.41
Consensus pattern (32 bp):
TAACTATCTTCATCTGAATACCATTCAAACTT
Found at i:38231724 original size:35 final size:35
Alignment explanation
Indices: 38231649--38231716 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
38231639 GTAATATAAT
* *
38231649 TTTTTTAAAATAAAAAATAATTTAAAGTCATTAAA
1 TTTTTTAAAATAAAAAATAATTTAAAATCATAAAA
38231684 TTTTTTAAAA-AATAAAATAA-TTAAAATC-TAAAA
1 TTTTTTAAAATAA-AAAATAATTTAAAATCATAAAA
38231717 GTATTTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
33 4 0.13
34 9 0.30
35 17 0.57
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.38
Consensus pattern (35 bp):
TTTTTTAAAATAAAAAATAATTTAAAATCATAAAA
Found at i:38232695 original size:17 final size:17
Alignment explanation
Indices: 38232673--38232706 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
38232663 AATTCCAACC
*
38232673 CTTAACATTTACACATT
1 CTTAACATTAACACATT
38232690 CTTAACATTAACACATT
1 CTTAACATTAACACATT
38232707 GTGTGTGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (17 bp):
CTTAACATTAACACATT
Found at i:38234234 original size:12 final size:12
Alignment explanation
Indices: 38234217--38234242 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38234207 TGTCTCTCTT
38234217 AAAAGAAAAAAG
1 AAAAGAAAAAAG
38234229 AAAAGAAAAAAG
1 AAAAGAAAAAAG
38234241 AA
1 AA
38234243 GAACAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:38235637 original size:19 final size:20
Alignment explanation
Indices: 38235615--38235654 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
38235605 TTATGTTTTT
*
38235615 AAAAATTTTAAATAT-ATTA
1 AAAAATGTTAAATATAATTA
*
38235634 AAAAATGTTAAGTATAATTA
1 AAAAATGTTAAATATAATTA
38235654 A
1 A
38235655 TTTTAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
AAAAATGTTAAATATAATTA
Found at i:38235762 original size:17 final size:17
Alignment explanation
Indices: 38235742--38235782 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
38235732 TAAAAAATTT
38235742 AAAAAATAAATATATTA
1 AAAAAATAAATATATTA
** *
38235759 AAAATTTAAATATGTTA
1 AAAAAATAAATATATTA
38235776 AAAAAAT
1 AAAAAAT
38235783 GTTGATTATA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAAAATAAATATATTA
Found at i:38236004 original size:25 final size:25
Alignment explanation
Indices: 38235975--38236028 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 25
38235965 GGGGTGGGTA
*
38235975 ATTTGAAAACTGGTGGCGTCAATTT
1 ATTTGAAAACTGGTGGCGCCAATTT
*** *
38236000 ATTTGGCTATTGGTGGCGCCAATTT
1 ATTTGAAAACTGGTGGCGCCAATTT
38236025 ATTT
1 ATTT
38236029 AGCTCCACCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.41
Consensus pattern (25 bp):
ATTTGAAAACTGGTGGCGCCAATTT
Found at i:38245587 original size:26 final size:26
Alignment explanation
Indices: 38245548--38245598 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
38245538 TTAAAATTTA
* *
38245548 TAAATGACTGTTATGCCACTATGAGG
1 TAAATAACTATTATGCCACTATGAGG
*
38245574 TAAATAACTATTATGCCCCTATGAG
1 TAAATAACTATTATGCCACTATGAG
38245599 ATGTATGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (26 bp):
TAAATAACTATTATGCCACTATGAGG
Found at i:38248772 original size:27 final size:26
Alignment explanation
Indices: 38248707--38248790 Score: 96
Period size: 27 Copynumber: 3.2 Consensus size: 26
38248697 ACCCCTTAAT
* *
38248707 TGATAAAATGACTGATATACCCCATT
1 TGATAAAATGACTGTTATACCCCATG
**
38248733 TGATAAAATGACTGTTATACCTTTATG
1 TGATAAAATGACTGTTATACC-CCATG
* *
38248760 TGGTAAAATGACTGTTATGCCCCTATG
1 TGATAAAATGACTGTTATACCCC-ATG
38248787 TGAT
1 TGAT
38248791 GTATGATTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 20 0.43
27 27 0.57
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (26 bp):
TGATAAAATGACTGTTATACCCCATG
Found at i:38252679 original size:6 final size:6
Alignment explanation
Indices: 38252668--38252696 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
38252658 TAAAACCGAA
38252668 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
38252697 GGATTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:38253950 original size:26 final size:26
Alignment explanation
Indices: 38253921--38254028 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
38253911 TGGTACAAAT
*
38253921 TGATAATGGGTTAGTTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
38253947 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
38253973 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
38253999 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
38254025 TGAT
1 TGAT
38254029 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:38261321 original size:41 final size:41
Alignment explanation
Indices: 38261208--38261353 Score: 195
Period size: 41 Copynumber: 3.6 Consensus size: 41
38261198 CGCTGACTCA
* * *
38261208 AAAAGCCCTTCGAGATCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * * *
38261249 GAAGGCCCTTCAAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
38261289 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
38261330 AAAAGCCCTTCGAGACCAAGCTCG
1 AAAAGCCCTTCGAGACCAAGCTCG
38261354 AATTTAAACC
Statistics
Matches: 87, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 31 0.36
41 56 0.64
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:38268500 original size:40 final size:41
Alignment explanation
Indices: 38268411--38268560 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
38268401 CGCTGACTCA
* *
38268411 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
38268452 GAAGGCCCTTCGAAACTAGGTTCGG-TTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
38268492 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
*
38268533 AAAAGCTCTTCGAGACCAAGCTCGGATT
1 AAAAGCCCTTCGAGACCAAGCTCGGATT
38268561 TAAACCCCAA
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
40 32 0.34
41 61 0.66
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:38272996 original size:14 final size:15
Alignment explanation
Indices: 38272977--38273012 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
38272967 TAGCCTCTCC
38272977 TTGTAATCTTT-CTT
1 TTGTAATCTTTCCTT
*
38272991 TTGTAAACTTTCCTT
1 TTGTAATCTTTCCTT
38273006 TTGTAAT
1 TTGTAAT
38273013 AATATAATCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.19, C:0.14, G:0.08, T:0.58
Consensus pattern (15 bp):
TTGTAATCTTTCCTT
Found at i:38281370 original size:14 final size:15
Alignment explanation
Indices: 38281337--38281370 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
38281327 GGATTATATT
38281337 ATTACAAAAGGAAAG
1 ATTACAAAAGGAAAG
*
38281352 TTTACAAAA-GAAAG
1 ATTACAAAAGGAAAG
38281366 ATTAC
1 ATTAC
38281371 GATGAGAGGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.56, C:0.09, G:0.15, T:0.21
Consensus pattern (15 bp):
ATTACAAAAGGAAAG
Found at i:38283567 original size:24 final size:24
Alignment explanation
Indices: 38283539--38283589 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
38283529 CAAACAATCC
* *
38283539 AAATATTAAAATTACAAGCCCA-AA
1 AAATAATAAAATCA-AAGCCCAGAA
*
38283563 AAATAATAAACTCAAAGCCCAGAA
1 AAATAATAAAATCAAAGCCCAGAA
38283587 AAA
1 AAA
38283590 AACCTAAGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.30
24 16 0.70
ACGTcount: A:0.61, C:0.18, G:0.06, T:0.16
Consensus pattern (24 bp):
AAATAATAAAATCAAAGCCCAGAA
Found at i:38284182 original size:33 final size:33
Alignment explanation
Indices: 38284136--38284201 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
38284126 GGCGGAGGAG
38284136 GGGGTCAACCGAATTCTTTTCTTTTTTAGGTTT
1 GGGGTCAACCGAATTCTTTTCTTTTTTAGGTTT
**
38284169 GGGGTCAGTCGAATTCTTTTCTTTTTTAGGTTT
1 GGGGTCAACCGAATTCTTTTCTTTTTTAGGTTT
38284202 TCGCCTGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.14, C:0.14, G:0.23, T:0.50
Consensus pattern (33 bp):
GGGGTCAACCGAATTCTTTTCTTTTTTAGGTTT
Found at i:38284988 original size:4 final size:4
Alignment explanation
Indices: 38284885--38284968 Score: 62
Period size: 4 Copynumber: 20.5 Consensus size: 4
38284875 ATTTTAATTC
* * * * * *
38284885 TTTA TTTCA TTCA TTTA TTTA TTTA CTTG TTTA TTCA -TTA TTTC TTGCA
1 TTTA TTT-A TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA
* *
38284934 TTTTA TTCA TTTA TTTG TTTA TTTA TTTA TTTA TT
1 -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
38284969 CGCATATCAT
Statistics
Matches: 60, Mismatches: 16, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
3 2 0.03
4 52 0.87
5 4 0.07
6 2 0.03
ACGTcount: A:0.20, C:0.08, G:0.04, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:38285094 original size:3 final size:3
Alignment explanation
Indices: 38285086--38285116 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
38285076 ATTTGTGCCT
38285086 TTA TTA TTA TTA TTA TTA TTA TT- TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
38285117 TATTCATCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:38285466 original size:21 final size:22
Alignment explanation
Indices: 38285415--38285472 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
38285405 CATTTTTTTG
38285415 TCATTATTA-TTATTGTTATCAT
1 TCATTATTATTTATT-TTATCAT
*
38285437 T-GTTATTATTTATTTTATCAT
1 TCATTATTATTTATTTTATCAT
38285458 TCATT-TTATTT-TTTT
1 TCATTATTATTTATTTT
38285473 GATTGTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 4 0.12
21 20 0.62
22 8 0.25
ACGTcount: A:0.22, C:0.07, G:0.03, T:0.67
Consensus pattern (22 bp):
TCATTATTATTTATTTTATCAT
Found at i:38285467 original size:39 final size:38
Alignment explanation
Indices: 38285406--38285485 Score: 90
Period size: 39 Copynumber: 2.1 Consensus size: 38
38285396 ATTTTTGTGC
* *
38285406 ATTTTTTTGTCATTATTATTATTGTTATCATTGTTATT
1 ATTTTTTTATCATTATTATTATTGTTATCATTGTTAAT
* * *
38285444 ATTTATTTTATCATTCATT-TTATTTTTTTGATTGTTAAT
1 ATTT-TTTTATCATT-ATTATTATTGTTATCATTGTTAAT
38285483 ATT
1 ATT
38285486 GGTATTAAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
38 4 0.11
39 28 0.80
40 3 0.09
ACGTcount: A:0.23, C:0.05, G:0.06, T:0.66
Consensus pattern (38 bp):
ATTTTTTTATCATTATTATTATTGTTATCATTGTTAAT
Found at i:38287834 original size:22 final size:22
Alignment explanation
Indices: 38287791--38287836 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
38287781 AAAAAGGAAA
38287791 AAGTGAAAGTTGAAATCAAAAT
1 AAGTGAAAGTTGAAATCAAAAT
38287813 AAGTGAAAGTTGAAATCAAAAT
1 AAGTGAAAGTTGAAATCAAAAT
38287835 AA
1 AA
38287837 AACTTGCTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.17, T:0.22
Consensus pattern (22 bp):
AAGTGAAAGTTGAAATCAAAAT
Found at i:38288403 original size:13 final size:15
Alignment explanation
Indices: 38288380--38288416 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
38288370 TAAGGAGAAG
*
38288380 AGAATGAAAAAAA-A
1 AGAAGGAAAAAAAGA
38288394 A-AAGGAAAAAAAGA
1 AGAAGGAAAAAAAGA
38288408 AGAAGGAAA
1 AGAAGGAAA
38288417 GTTCAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 10 0.50
14 3 0.15
15 7 0.35
ACGTcount: A:0.76, C:0.00, G:0.22, T:0.03
Consensus pattern (15 bp):
AGAAGGAAAAAAAGA
Found at i:38292863 original size:27 final size:27
Alignment explanation
Indices: 38292825--38292879 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
38292815 TTTCTTTTGT
38292825 CGTTAGATATGGCAAAAAGGTTACACA
1 CGTTAGATATGGCAAAAAGGTTACACA
38292852 CGTTAGATATGGCAAAAAGGTTACACA
1 CGTTAGATATGGCAAAAAGGTTACACA
38292879 C
1 C
38292880 ATTGACCATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.22
Consensus pattern (27 bp):
CGTTAGATATGGCAAAAAGGTTACACA
Found at i:38295488 original size:15 final size:15
Alignment explanation
Indices: 38295468--38295518 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
38295458 TTTAAATATA
38295468 TTTTATATTTTTTAG
1 TTTTATATTTTTTAG
*
38295483 TTTTATA-TTTATA-
1 TTTTATATTTTTTAG
*
38295496 TTTTTTAGTTTTTATAG
1 TTTTATA-TTTTT-TAG
38295513 TTTTAT
1 TTTTAT
38295519 TTTATTTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
13 6 0.21
14 5 0.18
15 10 0.36
16 2 0.07
17 5 0.18
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.73
Consensus pattern (15 bp):
TTTTATATTTTTTAG
Found at i:38295489 original size:22 final size:23
Alignment explanation
Indices: 38295464--38295526 Score: 87
Period size: 21 Copynumber: 2.8 Consensus size: 23
38295454 ATTTTTTAAA
38295464 TATATTTTATATTTTTTAG-TTT
1 TATATTTTATATTTTTTAGTTTT
38295486 TATA-TTTATATTTTTTAGTTTT
1 TATATTTTATATTTTTTAGTTTT
38295508 TATAGTTTTAT-TTTATTTA
1 TATA-TTTTATATTT-TTTA
38295527 ATAAAAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
21 14 0.38
22 11 0.30
23 3 0.08
24 9 0.24
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (23 bp):
TATATTTTATATTTTTTAGTTTT
Found at i:38295502 original size:30 final size:29
Alignment explanation
Indices: 38295463--38295523 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
38295453 AATTTTTTAA
*
38295463 ATATATTTTA-TATTTTTTAGTTTTATATTT
1 ATATATTTTAGT-TTTTATAGTTTTAT-TTT
*
38295493 ATATTTTTTAGTTTTTATAGTTTTATTTT
1 ATATATTTTAGTTTTTATAGTTTTATTTT
38295522 AT
1 AT
38295524 TTAATAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.18
30 22 0.79
31 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (29 bp):
ATATATTTTAGTTTTTATAGTTTTATTTT
Found at i:38296261 original size:7 final size:7
Alignment explanation
Indices: 38296239--38296285 Score: 53
Period size: 8 Copynumber: 6.6 Consensus size: 7
38296229 TTTATTAAAT
38296239 AAATA-A
1 AAATATA
38296245 AAACTATA
1 AAA-TATA
38296253 AAATAT-
1 AAATATA
38296259 AAATATAA
1 AAATAT-A
38296267 AAATAATA
1 AAAT-ATA
38296275 AAATATA
1 AAATATA
38296282 AAAT
1 AAAT
38296286 TTATTTTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
6 9 0.25
7 12 0.33
8 13 0.36
9 2 0.06
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATATA
Found at i:38296269 original size:22 final size:22
Alignment explanation
Indices: 38296237--38296283 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
38296227 TTTTTATTAA
*
38296237 ATAAATA-AAAACT-ATAAAAT
1 ATAAATATAAAAATAATAAAAT
38296257 ATAAATATAAAAATAATAAAAT
1 ATAAATATAAAAATAATAAAAT
38296279 ATAAA
1 ATAAA
38296284 ATTTATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 7 0.29
21 5 0.21
22 12 0.50
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (22 bp):
ATAAATATAAAAATAATAAAAT
Found at i:38304337 original size:22 final size:23
Alignment explanation
Indices: 38304312--38304357 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
38304302 CAACCAAACC
38304312 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
38304334 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
38304357 A
1 A
38304358 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:38304363 original size:23 final size:23
Alignment explanation
Indices: 38304319--38304363 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
38304309 ACCAATTCAA
*
38304319 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
38304342 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
38304364 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:38309282 original size:2 final size:2
Alignment explanation
Indices: 38309275--38309310 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
38309265 TTTCTTCATC
38309275 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38309311 CCGATGACTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:38311196 original size:22 final size:21
Alignment explanation
Indices: 38311146--38311196 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
38311136 TGATAAAGAT
38311146 AAAAATATATACATAAAATAG
1 AAAAATATATACATAAAATAG
* *
38311167 TAATAATATATATATAACTAATA-
1 -AAAAATATATACATAA--AATAG
38311190 AAAAATA
1 AAAAATA
38311197 AAATAAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 20 0.83
24 4 0.17
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (21 bp):
AAAAATATATACATAAAATAG
Found at i:38311351 original size:21 final size:21
Alignment explanation
Indices: 38311312--38311383 Score: 67
Period size: 21 Copynumber: 3.3 Consensus size: 21
38311302 ATATATATAA
*
38311312 ATATATATAATGGTATTAGAAAT
1 ATATATATAATAG--TTAGAAAT
38311335 ATATATAGTAAT-GTTAGAAAT
1 ATATATA-TAATAGTTAGAAAT
* *
38311356 ATACATATAATAGTTCA-AAAG
1 ATATATATAATAGTT-AGAAAT
38311377 ATATATA
1 ATATATA
38311384 ACTAACAATA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
20 4 0.09
21 26 0.60
22 1 0.02
23 8 0.19
24 4 0.09
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATATATAATAGTTAGAAAT
Found at i:38312968 original size:41 final size:39
Alignment explanation
Indices: 38312891--38312969 Score: 97
Period size: 41 Copynumber: 2.0 Consensus size: 39
38312881 ATTTGAGTCT
* * *
38312891 TGGGTTGTTTTGGGCTAGGTCGGTTTAGGTTAGTGGGTG
1 TGGGTTGTATTGGGCTAGGTAGGTTTAGGGTAGTGGGTG
38312930 TGGGTTAGTATTGGGCTGAGGGTAGGTTT-GGGTAGTGGGT
1 TGGGTT-GTATTGGGCT-A-GGTAGGTTTAGGGTAGTGGGT
38312970 TTAGGTTTTG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
39 6 0.18
40 9 0.26
41 11 0.32
42 8 0.24
ACGTcount: A:0.10, C:0.04, G:0.48, T:0.38
Consensus pattern (39 bp):
TGGGTTGTATTGGGCTAGGTAGGTTTAGGGTAGTGGGTG
Found at i:38313915 original size:23 final size:23
Alignment explanation
Indices: 38313873--38313916 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
38313863 CTAAAATCAC
38313873 TTGTAAAAGCAAGACTAAAAAAT
1 TTGTAAAAGCAAGACTAAAAAAT
*
38313896 TTGTACAAGACAAGAC-AAAAA
1 TTGTAAAAG-CAAGACTAAAAA
38313917 CTTCTAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.57, C:0.11, G:0.14, T:0.18
Consensus pattern (23 bp):
TTGTAAAAGCAAGACTAAAAAAT
Found at i:38315397 original size:17 final size:17
Alignment explanation
Indices: 38315375--38315408 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
38315365 TTTAACATAT
38315375 TGTTAAAATACTATTTA
1 TGTTAAAATACTATTTA
* *
38315392 TGTTAAACTAGTATTTA
1 TGTTAAAATACTATTTA
38315409 AACAATATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.47
Consensus pattern (17 bp):
TGTTAAAATACTATTTA
Found at i:38320184 original size:48 final size:48
Alignment explanation
Indices: 38320113--38320210 Score: 196
Period size: 48 Copynumber: 2.0 Consensus size: 48
38320103 CCAACTTATA
38320113 ATCATTTGTGTGTTTTTGGATTTTGTTTTCCTTATCTTCAGCCTTTTC
1 ATCATTTGTGTGTTTTTGGATTTTGTTTTCCTTATCTTCAGCCTTTTC
38320161 ATCATTTGTGTGTTTTTGGATTTTGTTTTCCTTATCTTCAGCCTTTTC
1 ATCATTTGTGTGTTTTTGGATTTTGTTTTCCTTATCTTCAGCCTTTTC
38320209 AT
1 AT
38320211 AATCATAAGC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 50 1.00
ACGTcount: A:0.11, C:0.16, G:0.14, T:0.58
Consensus pattern (48 bp):
ATCATTTGTGTGTTTTTGGATTTTGTTTTCCTTATCTTCAGCCTTTTC
Found at i:38321164 original size:10 final size:10
Alignment explanation
Indices: 38321149--38321173 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
38321139 CCATAATTTA
38321149 TGATACAAAT
1 TGATACAAAT
38321159 TGATACAAAT
1 TGATACAAAT
38321169 TGATA
1 TGATA
38321174 ATAGGTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.32
Consensus pattern (10 bp):
TGATACAAAT
Found at i:38321206 original size:26 final size:26
Alignment explanation
Indices: 38321169--38321304 Score: 211
Period size: 26 Copynumber: 5.2 Consensus size: 26
38321159 TGATACAAAT
*
38321169 TGATAATAGG-TTAGGTAAATGTTCCA
1 TGATAAT-GGATTAGGTAAATGTTTCA
*
38321195 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGATTAGGTAAATGTTTCA
* *
38321221 TGATAATGGATTAGGTAAATATTACA
1 TGATAATGGATTAGGTAAATGTTTCA
38321247 TGATAATGGATTAGGTAAATGTTTCA
1 TGATAATGGATTAGGTAAATGTTTCA
*
38321273 TGATAATGGTTTAGGTAAATGTTTCA
1 TGATAATGGATTAGGTAAATGTTTCA
38321299 TGATAA
1 TGATAA
38321305 GAAATTCATG
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 2 0.02
26 100 0.98
ACGTcount: A:0.35, C:0.04, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTTCA
Found at i:38325359 original size:53 final size:53
Alignment explanation
Indices: 38325279--38325384 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
38325269 CAACTCATTA
38325279 AGTGAATAAATCTACAGCATCACTTATACATATAATTCCTAGCATAGTAAGAT
1 AGTGAATAAATCTACAGCATCACTTATACATATAATTCCTAGCATAGTAAGAT
*
38325332 AGTGAATAAATCTACAGTATCACTTATACATATAATTCCTAGCATAGTAAGAT
1 AGTGAATAAATCTACAGCATCACTTATACATATAATTCCTAGCATAGTAAGAT
38325385 TTTAAACAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.31
Consensus pattern (53 bp):
AGTGAATAAATCTACAGCATCACTTATACATATAATTCCTAGCATAGTAAGAT
Found at i:38326039 original size:21 final size:21
Alignment explanation
Indices: 38326015--38326078 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
38326005 TAAAAACCCG
38326015 TAAGGGTTGAAAAGAAGCTCA
1 TAAGGGTTGAAAAGAAGCTCA
* * * *
38326036 TAAGAGCTGAACAGAAGCCCA
1 TAAGGGTTGAAAAGAAGCTCA
*
38326057 TAAGGGTT-AAACAGAAACTCA
1 TAAGGGTTGAAA-AGAAGCTCA
38326078 T
1 T
38326079 GTGAGTTAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
20 2 0.06
21 31 0.94
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17
Consensus pattern (21 bp):
TAAGGGTTGAAAAGAAGCTCA
Found at i:38326197 original size:24 final size:24
Alignment explanation
Indices: 38326165--38326212 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
38326155 TACTTTGGTA
*
38326165 ATTTGCCGTCAATTCATCCTTTGC
1 ATTTACCGTCAATTCATCCTTTGC
*
38326189 ATTTACCGTCAATTCATCTTTTGC
1 ATTTACCGTCAATTCATCCTTTGC
38326213 CATAGAACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.27, G:0.10, T:0.44
Consensus pattern (24 bp):
ATTTACCGTCAATTCATCCTTTGC
Found at i:38326327 original size:45 final size:45
Alignment explanation
Indices: 38326272--38326364 Score: 143
Period size: 45 Copynumber: 2.1 Consensus size: 45
38326262 ATTCAATTTC
* *
38326272 ATAATTTAACAATATTCCATTTTTCAACAAC-ATGCTATATACATA
1 ATAATTTAACAATATTCCATTTTTCAAC-ACTATACTAAATACATA
*
38326317 ATAATTTAACAATATTCTATTTTTCAACACTATACTAAATACATA
1 ATAATTTAACAATATTCCATTTTTCAACACTATACTAAATACATA
38326362 ATA
1 ATA
38326365 TCATTCATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 2 0.05
45 42 0.95
ACGTcount: A:0.44, C:0.16, G:0.01, T:0.39
Consensus pattern (45 bp):
ATAATTTAACAATATTCCATTTTTCAACACTATACTAAATACATA
Found at i:38332674 original size:27 final size:27
Alignment explanation
Indices: 38332642--38332822 Score: 256
Period size: 27 Copynumber: 6.7 Consensus size: 27
38332632 CCTAATTTGT
*
38332642 AGAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
38332669 AGAATTACCGTTTCA-CCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
38332695 AAAATTACCATTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
*
38332722 AGAATTACCATTTTACCCTCGAATTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
38332749 AGAATTACCGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
38332776 AAAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
38332803 AAAATTACCGTTTTACCCTC
1 AGAATTACCATTTTACCCTC
38332823 AATTGTGAAA
Statistics
Matches: 137, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
26 22 0.16
27 115 0.84
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:38332801 original size:81 final size:80
Alignment explanation
Indices: 38332629--38332826 Score: 301
Period size: 81 Copynumber: 2.5 Consensus size: 80
38332619 ATTACTAAAA
* * *
38332629 TACCCT-AATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCTCGATTT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGAATTACAGAATTACCGTTTCACCTCGATTT
38332693 ACAAAATTACCATTT
66 ACAAAATTACCATTT
* *
38332708 TACCCTCGATTTATAGAATTACCATTTTACCCTCGAATTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGAATTACAGAATTACCGTTTCA-CCTCGATT
38332773 TACAAAATTACCATTT
65 TACAAAATTACCATTT
* * *
38332789 TACCCTCAATTTACAAAATTACCGTTTTACCCTC-AATT
1 TACCCTCAATTTATAGAATTACCATTTTACCCTCGAATT
38332827 GTGAAATTAC
Statistics
Matches: 108, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
79 6 0.06
80 48 0.44
81 54 0.50
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.38
Consensus pattern (80 bp):
TACCCTCAATTTATAGAATTACCATTTTACCCTCGAATTACAGAATTACCGTTTCACCTCGATTT
ACAAAATTACCATTT
Found at i:38332869 original size:27 final size:27
Alignment explanation
Indices: 38332830--38332983 Score: 105
Period size: 27 Copynumber: 5.7 Consensus size: 27
38332820 CTCAATTGTG
**
38332830 AAATTACTGAAATACCCCT-GTAGGATA
1 AAATTACCAAAATACCCCTAGTAGG-TA
** * **
38332857 GGATTACCAAAATGCCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
**
38332884 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTAGGTA
* * * ** *
38332911 AAATTACCGAAATACCACTGGTTTGTG
1 AAATTACCAAAATACCCCTAGTAGGTA
* * **
38332938 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-AGTAGGTA
38332965 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
38332984 GATTTACAAA
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.03
27 95 0.90
28 7 0.07
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTAGGTA
Found at i:38332945 original size:81 final size:81
Alignment explanation
Indices: 38332859--38333007 Score: 212
Period size: 81 Copynumber: 1.8 Consensus size: 81
38332849 GTAGGATAGG
* * ** *
38332859 ATTACCAAAATGCCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCGAA
1 ATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAGAA
38332922 ATACCACTGGTTTGTGAA
64 ATACCACTGGTTTGTGAA
*
38332940 ATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAAT
1 ATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAAT
38333005 ACC
66 ACC
38333008 TTGACTTTTA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
81 58 0.97
82 2 0.03
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (81 bp):
ATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAAT
ACCACTGGTTTGTGAA
Found at i:38332988 original size:27 final size:26
Alignment explanation
Indices: 38332859--38333007 Score: 156
Period size: 27 Copynumber: 5.5 Consensus size: 26
38332849 GTAGGATAGG
*
38332859 ATTACCAAAATGCCCCTAGTTTGTAAA
1 ATTACCAAAATACCCCTA-TTTGTAAA
38332886 ATTACCAAAATACCCCTAGTTTGTAAA
1 ATTACCAAAATACCCCTA-TTTGTAAA
* * * *
38332913 ATTACCGAAATACCACTGGTTTGTGAA
1 ATTACCAAAATACCCCT-ATTTGTAAA
* *
38332940 ATTACCGAAATACCCTCAATTTGTAAA
1 ATTACCAAAATACCC-CTATTTGTAAA
**
38332967 ATTACCAAAATACCCCTGATTTACAAA
1 ATTACCAAAATACCCCT-ATTTGTAAA
38332994 ATTA-CAGAAATACC
1 ATTACCA-AAATACC
38333008 TTGACTTTTA
Statistics
Matches: 105, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
26 3 0.03
27 101 0.96
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (26 bp):
ATTACCAAAATACCCCTATTTGTAAA
Found at i:38332996 original size:54 final size:54
Alignment explanation
Indices: 38332883--38333062 Score: 177
Period size: 54 Copynumber: 3.4 Consensus size: 54
38332873 CCTAGTTTGT
* * * * **
38332883 AAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCGAAATACCACTGGTTTGT
1 AAAATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCACTGATTTAC
* *
38332937 GAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTAC
* * * * * * *
38332991 AAAATTACAGAAATACCTTGACTTT-TAAAAATTA-TAAAATACCATTGGTTTAC
1 AAAATTACCGAAATACCCTCAATTTGT-AAAATTACCAAAATACCACTGATTTAC
*
38333044 AAAATTACTGAAATACCCT
1 AAAATTACCGAAATACCCT
38333063 TGGTTTGTAG
Statistics
Matches: 105, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
53 33 0.31
54 71 0.68
55 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGATTTAC
Found at i:38333021 original size:27 final size:27
Alignment explanation
Indices: 38332910--38333068 Score: 92
Period size: 27 Copynumber: 5.9 Consensus size: 27
38332900 CCTAGTTTGT
* * **
38332910 AAAATTACCGAAATACCACTGGTTTGT
1 AAAATTACAGAAATACCATTGGTTTAC
* * * *** **
38332937 GAAATTACCGAAATACCCTCAATTTGT
1 AAAATTACAGAAATACCATTGGTTTAC
** *
38332964 AAAATTACCA-AAATACCCCTGATTTAC
1 AAAATTA-CAGAAATACCATTGGTTTAC
*
38332991 AAAATTACAGAAATACC-TTGACTTTTA-
1 AAAATTACAGAAATACCATTG--GTTTAC
*
38333018 AAAATTATA-AAATACCATTGGTTTAC
1 AAAATTACAGAAATACCATTGGTTTAC
* *
38333044 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACAGAAATACCATTGGTTT
38333069 GTAGATTTAC
Statistics
Matches: 105, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
25 4 0.04
26 18 0.17
27 78 0.74
28 5 0.05
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACAGAAATACCATTGGTTTAC
Found at i:38333152 original size:27 final size:27
Alignment explanation
Indices: 38333109--38333182 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
38333099 AAATGACTAA
*
38333109 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
38333136 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
38333163 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
38333183 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:38333186 original size:27 final size:27
Alignment explanation
Indices: 38333122--38333186 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
38333112 ACCCCTAATA
*
38333122 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
38333149 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
38333176 GGTAAAATGAC
1 GGTAAAATGAC
38333187 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:38334030 original size:25 final size:25
Alignment explanation
Indices: 38333992--38334061 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
38333982 AGGAAGTGCT
* *
38333992 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
38334017 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
38334042 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
38334062 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:38334063 original size:24 final size:25
Alignment explanation
Indices: 38333992--38334085 Score: 111
Period size: 25 Copynumber: 3.8 Consensus size: 25
38333982 AGGAAGTGCT
* *
38333992 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTATGCCCCAGTTTATCA
*
38334017 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTATGCCCCAGTTTATCA
* *
38334042 AAAAGGGCTTTGCCCCAG-TTAT-T
1 AAAAGGGCTATGCCCCAGTTTATCA
*
38334065 AAAAGAGGCTAGGCCCCAGTT
1 AAAAG-GGCTATGCCCCAGTT
38334086 ATATGATAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
23 5 0.08
24 15 0.25
25 41 0.67
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTATGCCCCAGTTTATCA
Found at i:38334329 original size:31 final size:31
Alignment explanation
Indices: 38334280--38334424 Score: 231
Period size: 31 Copynumber: 4.7 Consensus size: 31
38334270 CGCTTGCAGT
38334280 AAAGGCTTCGG-CCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAGTTATATGATTTATGA
38334310 AAAGGCTTCGGCCCAGTTATATGATTTATGA
1 AAAGGCTTCGGCCCAGTTATATGATTTATGA
*
38334341 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTTATATGATTTATGA
* * *
38334372 AAAGGCTTCGGTCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTTATATGATTTATGA
*
38334403 AAAGGCTTCAGCCCAG-TATATG
1 AAAGGCTTCGGCCCAGTTATATG
38334425 TCAAGACTAA
Statistics
Matches: 108, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
30 16 0.15
31 92 0.85
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTTATATGATTTATGA
Found at i:38338991 original size:27 final size:27
Alignment explanation
Indices: 38338949--38339105 Score: 208
Period size: 27 Copynumber: 5.8 Consensus size: 27
38338939 TTACATATAG
*
38338949 AATTACCGTTTCACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
* * * *
38338976 AATTATCGTTTTACCCTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTACAA
* * *
38339003 AATTACCATTTTACCCTCGAATTACAG
1 AATTACCGTTTTACCCTCGATTTACAA
38339030 AATTACCGTTTTACCCTCGATTTACAA
1 AATTACCGTTTTACCCTCGATTTACAA
*
38339057 AATTACCATTTTACCCTC-AGTTTACAA
1 AATTACCGTTTTACCCTCGA-TTTACAA
*
38339084 AATTATCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
38339106 GTGAAATTAT
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
26 1 0.01
27 110 0.98
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTACAA
Found at i:38339028 original size:54 final size:54
Alignment explanation
Indices: 38338944--38339105 Score: 236
Period size: 54 Copynumber: 3.0 Consensus size: 54
38338934 GGCTGTTACA
* * *
38338944 TATAGAATTACCGTTTCACCCTCGATTTACAAAATTATCGTTTTACCCTTGATT
1 TATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATT
* * *
38338998 TATAGAATTACCATTTTACCCTCGAATTACAGAATTACCGTTTTACCCTCGATT
1 TATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATT
* *
38339052 TACAAAATTACCATTTTACCCTC-AGTTTACAAAATTATCGTTTTACCCTCGATT
1 TATAGAATTACCATTTTACCCTCGA-TTTACAAAATTATCGTTTTACCCTCGATT
38339106 GTGAAATTAT
Statistics
Matches: 96, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.01
54 95 0.99
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (54 bp):
TATAGAATTACCATTTTACCCTCGATTTACAAAATTATCGTTTTACCCTCGATT
Found at i:38339148 original size:27 final size:27
Alignment explanation
Indices: 38339118--38339262 Score: 114
Period size: 27 Copynumber: 5.4 Consensus size: 27
38339108 GAAATTATTG
*
38339118 AAATACCCCT-GTAGGATAGAATTACCA
1 AAATACCCCTAGTAGG-TAAAATTACCA
**
38339145 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTAGGTAAAATTACCA
** *
38339172 AAATACCCCTAGTTTGTAAAATTACCG
1 AAATACCCCTAGTAGGTAAAATTACCA
* * ** * *
38339199 AAATACCACTGGTTTGTGAAATTACCG
1 AAATACCCCTAGTAGGTAAAATTACCA
* ** *
38339226 AAATA-CCCTCAATTTGTAAAATTACTA
1 AAATACCCCT-AGTAGGTAAAATTACCA
38339253 AAATACCCCT
1 AAATACCCCT
38339263 GATTTACAAA
Statistics
Matches: 102, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 3 0.03
27 92 0.90
28 7 0.07
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
AAATACCCCTAGTAGGTAAAATTACCA
Found at i:38339178 original size:54 final size:54
Alignment explanation
Indices: 38339118--38339259 Score: 144
Period size: 54 Copynumber: 2.6 Consensus size: 54
38339108 GAAATTATTG
* *
38339118 AAATACCCCT-GTAGGATAGAATTACCAAAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTAGG-TAAAATTACCAAAATACCACTAGTTTGTAAAATTACCA
** * * * *
38339172 AAATACCCCTAGTTTGTAAAATTACCGAAATACCACTGGTTTGTGAAATTACCG
1 AAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCA
* ** *
38339226 AAATA-CCCTCAATTTGTAAAATTACTAAAATACC
1 AAATACCCCT-AGTAGGTAAAATTACCAAAATACC
38339260 CCTGATTTAC
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
53 4 0.05
54 68 0.91
55 3 0.04
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (54 bp):
AAATACCCCTAGTAGGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCA
Found at i:38339230 original size:81 final size:81
Alignment explanation
Indices: 38339137--38339286 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
38339127 TGTAGGATAG
* ** *
38339137 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTGA-TTTACAAAATTACAGA
38339200 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
* *
38339218 AATTACCGAAATACCCTCAATTTGTAAAATTACTAAAATACCCCTGATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
38339283 TACC
66 TACC
38339287 CTTGACTTTC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
81 59 0.97
82 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:38339267 original size:27 final size:27
Alignment explanation
Indices: 38339137--38339370 Score: 161
Period size: 27 Copynumber: 8.6 Consensus size: 27
38339127 TGTAGGATAG
38339137 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
38339164 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * * *
38339191 AATTACCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
38339218 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
* **
38339245 AATTACTAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
38339272 AATTA-CAGAAATACCCTTGACTTTCTAAA
1 AATTACCA-AAATACCCCTGA-TTTGT-AA
** ** * **
38339301 AATTATAAAAATACCATTGGTTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
** * * *
38339328 AATTACTGAAATACCCTTGGTTTGTAG
1 AATTACCAAAATACCCCTGATTTGTAA
* *
38339355 ATTTACCAAAACACCC
1 AATTACCAAAATACCC
38339371 TTGTAGGATG
Statistics
Matches: 167, Mismatches: 33, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.02
27 135 0.81
28 10 0.06
29 17 0.10
30 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:38339434 original size:27 final size:27
Alignment explanation
Indices: 38339391--38339464 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
38339381 AAATGACTAA
*
38339391 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
38339418 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
38339445 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
38339465 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:38339468 original size:27 final size:27
Alignment explanation
Indices: 38339404--38339468 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
38339394 ACCCCTAATA
*
38339404 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
* * *
38339431 GGTAAAGTGACCGTAATA-CCCTTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
38339458 GGTAAAATGAC
1 GGTAAAATGAC
38339469 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:38340305 original size:25 final size:25
Alignment explanation
Indices: 38340277--38340346 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
38340267 AGGAGGTGCT
*
38340277 AAAAGGG-TTATGCCCCAGTTTACCG
1 AAAAGGGCTT-TGCCCCAGTTTACCA
* *
38340302 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
38340327 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
38340347 AGTAAAAGAG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 38 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:38340359 original size:24 final size:25
Alignment explanation
Indices: 38340287--38340359 Score: 73
Period size: 25 Copynumber: 3.0 Consensus size: 25
38340277 AAAAGGGTTA
*
38340287 TGCCCCAGTTTACCGAAAAG-GGCTT
1 TGCCCCAGTTTATC-AAAAGAGGCTT
*
38340312 TGCCCTAGTTTATCAAAA-AGGGCTT
1 TGCCCCAGTTTATCAAAAGA-GGCTT
38340337 TGCCCCAG-TTAGT-AAAAGAGGCT
1 TGCCCCAGTTTA-TCAAAAGAGGCT
38340360 AGGCCTCCAG
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
24 15 0.37
25 26 0.63
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (25 bp):
TGCCCCAGTTTATCAAAAGAGGCTT
Found at i:38343839 original size:14 final size:14
Alignment explanation
Indices: 38343822--38343851 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
38343812 TAAATTTTAC
*
38343822 AAATAATTAATATA
1 AAATAATAAATATA
38343836 AAATAATAAATATA
1 AAATAATAAATATA
38343850 AA
1 AA
38343852 TTCTTGATAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
AAATAATAAATATA
Found at i:38344224 original size:12 final size:12
Alignment explanation
Indices: 38344203--38344241 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
38344193 TGACGTGGCA
*
38344203 GAGGAGGACGAT
1 GAGGACGACGAT
*
38344215 GAGGACGACGAA
1 GAGGACGACGAT
*
38344227 GAGGATGACGAT
1 GAGGACGACGAT
38344239 GAG
1 GAG
38344242 CTTTATGGCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.36, C:0.10, G:0.46, T:0.08
Consensus pattern (12 bp):
GAGGACGACGAT
Found at i:38347530 original size:55 final size:55
Alignment explanation
Indices: 38347465--38347574 Score: 202
Period size: 55 Copynumber: 2.0 Consensus size: 55
38347455 TTGTTTTTCG
*
38347465 TTGCACTAGCATAGCAGTTGCACTTTTGATGTATATTAATGATGATTCTTTTCAT
1 TTGCACTAGCATAGCAGTTGCACTTTTGATGTATACTAATGATGATTCTTTTCAT
*
38347520 TTGCACTAGCATAGCGGTTGCACTTTTGATGTATACTAATGATGATTCTTTTCAT
1 TTGCACTAGCATAGCAGTTGCACTTTTGATGTATACTAATGATGATTCTTTTCAT
38347575 ACTTACGCAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.43
Consensus pattern (55 bp):
TTGCACTAGCATAGCAGTTGCACTTTTGATGTATACTAATGATGATTCTTTTCAT
Found at i:38347688 original size:125 final size:125
Alignment explanation
Indices: 38347515--38347910 Score: 456
Period size: 125 Copynumber: 3.2 Consensus size: 125
38347505 GATGATTCTT
*
38347515 TTCATTTGCACTAGCATAGCGGTTGCACTTTTGATGTATACTAATGATGATTCTTTTCATACTTA
1 TTCA-TTGCACTAGCATAGCGGTTGCACTTTTGATGTATACTAATGATGATTCTTTTCATTCTTA
* * * * * * *
38347580 CGCAATTTGTTGCATATGTTGTTATTCATTTCCATTTCTCGATTTTAATGTTGACATATTC
65 CGCAATTTGTTGCATATATTGTTATTCGTTTGCATATCTCGAGTTTAATGTTGATATGTTC
* * * * * *
38347641 TTCATTGCAATAGAATAGTGGTTGCACTTTTGATGTATACTAGTGATGATTCTTTCCGGTTCTTA
1 TTCATTGCACTAGCATAGCGGTTGCACTTTTGATGTATACTAATGATGATTCTTTTC-ATTCTTA
* * * * * * *
38347706 CACAATTTGTTGCATTTATGGTTATTCGTTTGTATATCTTGAGTTTAATGTCGATACGTTC
65 CGCAATTTGTTGCATATATTGTTATTCGTTTGCATATCTCGAGTTTAATGTTGATATGTTC
* * * * ** *
38347767 TTCATTGTATTAGCTTAGCGATTGCAC-TTCAATATATACTAATGATGATTCTTTAT-AGTTCTT
1 TTCATTGCACTAGCATAGCGGTTGCACTTTTGATGTATACTAATGATGATTCTTT-TCA-TTCTT
*
38347830 ACGCAATTT-TCTGCATATATTGTTATTTGTTTGCATATCTCGAGTTTAATGTTGATATGTTC
64 ACGCAATTTGT-TGCATATATTGTTATTCGTTTGCATATCTCGAGTTTAATGTTGATATGTTC
*
38347892 TTCAATGCACTAGCATAGC
1 TTCATTGCACTAGCATAGC
38347911 ATAGTAAGCT
Statistics
Matches: 221, Mismatches: 45, Indels: 9
0.80 0.16 0.03
Matches are distributed among these distances:
124 1 0.00
125 143 0.65
126 77 0.35
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (125 bp):
TTCATTGCACTAGCATAGCGGTTGCACTTTTGATGTATACTAATGATGATTCTTTTCATTCTTAC
GCAATTTGTTGCATATATTGTTATTCGTTTGCATATCTCGAGTTTAATGTTGATATGTTC
Done.