Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 159 of 335
Found at i:46726057 original size:27 final size:27
Alignment explanation
Indices: 46725990--46726198 Score: 251
Period size: 27 Copynumber: 7.8 Consensus size: 27
46725980 GGGTATTTTA
* * *
46725990 GTAATTTTGTAAATTGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
46726017 GTAATTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
46726044 GTAATTCTGTAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
46726071 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
46726098 GTAATTCTATAAGTCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
46726125 GTAATTATGTAAATTG-GGGTAAAATT
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
46726151 GTAATTATGTAAATTGGGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
46726178 GTAATTCTGTAAATCG-GGGTA
1 GTAATTCTGTAAATCGAGGGTA
46726199 CTTTGGTAAT
Statistics
Matches: 162, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
26 29 0.18
27 133 0.82
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.32
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:46726184 original size:107 final size:107
Alignment explanation
Indices: 46726005--46726198 Score: 291
Period size: 107 Copynumber: 1.8 Consensus size: 107
46725995 TTTGTAAATT
* * *
46726005 GAGGGTAAAATAGTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTGTAAATTGAGGGTAAAAC
1 GAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAATAGTAATTATGTAAATTGAGGGTAAAAC
46726070 GGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAGTC
66 GGTAATTCTGTAAATCG-GGGTAAAACGGTAATTCTATAAGTC
* ** * * *
46726113 GAGGGTAAAACGGTAATTATGTAAAT-TGGGGTAAAATTGTAATTATGTAAATTGGGGGTAAAAT
1 GAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAATAGTAATTATGTAAATTGAGGGTAAAAC
46726177 GGTAATTCTGTAAATCGGGGTA
66 GGTAATTCTGTAAATCGGGGTA
46726199 CTTTGGTAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
106 5 0.06
107 49 0.64
108 23 0.30
ACGTcount: A:0.38, C:0.06, G:0.26, T:0.30
Consensus pattern (107 bp):
GAGGGTAAAACAGTAATTATGTAAATCAAGGGTAAAATAGTAATTATGTAAATTGAGGGTAAAAC
GGTAATTCTGTAAATCGGGGTAAAACGGTAATTCTATAAGTC
Found at i:46726234 original size:27 final size:27
Alignment explanation
Indices: 46726204--46726292 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
46726194 GGGTACTTTG
* *
46726204 GTAATTTTACAAGTTGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
46726231 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * * *
46726258 ATATTTTTACAAA-CTAAGGGTATTT-G
1 GTAATTTTACAAATCGAA-GGTATTTCA
46726284 GTAATTTTA
1 GTAATTTTA
46726293 GTAAACTAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
26 9 0.18
27 42 0.82
ACGTcount: A:0.34, C:0.08, G:0.17, T:0.42
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:46728639 original size:42 final size:42
Alignment explanation
Indices: 46728592--46728683 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
46728582 TGGCCCATAG
* ** *
46728592 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
*
46728634 GCCCATTTCAATATCATATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
46728676 GCCCATTT
1 GCCCATTT
46728684 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:46728857 original size:25 final size:26
Alignment explanation
Indices: 46728829--46728923 Score: 140
Period size: 25 Copynumber: 3.7 Consensus size: 26
46728819 CTCTTTTAAT
46728829 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
46728854 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* *
46728879 AACTGGGGCATAAGCCTTTTTTGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
46728905 AACTGGGGCATAAGCCCTT
1 AACTGGGGCATAAGCCCTT
46728924 GATATTAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 33 0.53
26 29 0.47
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:46728911 original size:51 final size:49
Alignment explanation
Indices: 46728816--46728923 Score: 155
Period size: 51 Copynumber: 2.1 Consensus size: 49
46728806 CTGGAGGCCT
46728816 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATA
* *
46728865 AGCCCTTTTCAATAAACTGGGGCATAAGCCTTTTTTGGTAAACTGGGGCATA
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATA
46728917 AGCCCTT
1 AGCCCTT
46728924 GATATTAAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
48 5 0.09
49 7 0.13
50 10 0.19
51 23 0.43
52 8 0.15
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (49 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATA
Found at i:46728932 original size:26 final size:25
Alignment explanation
Indices: 46728816--46728923 Score: 114
Period size: 25 Copynumber: 4.3 Consensus size: 25
46728806 CTGGAGGCCT
46728816 AGCCTCTTTTAAT-AACTGGGGCA-A
1 AGCC-CTTTTAATAAACTGGGGCATA
**
46728840 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTT-AATAAACTGGGGCATA
46728865 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCATA
* **
46728891 AGCCTTTTTTGGTAAACTGGGGCATA
1 AGCC-CTTTTAATAAACTGGGGCATA
46728917 AGCCCTT
1 AGCCCTT
46728924 GATATTAAAT
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
23 5 0.07
24 5 0.07
25 35 0.49
26 23 0.32
27 4 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCATA
Found at i:46729617 original size:23 final size:24
Alignment explanation
Indices: 46729591--46729640 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
46729581 CCTATACTTG
46729591 TGATGTATGAAATGTA-GTGAAAA
1 TGATGTATGAAATGTATGTGAAAA
* * * *
46729614 TGATTTGTGATATGTATGTTAAAA
1 TGATGTATGAAATGTATGTGAAAA
46729638 TGA
1 TGA
46729641 GGTTAATACA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 13 0.59
24 9 0.41
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (24 bp):
TGATGTATGAAATGTATGTGAAAA
Found at i:46730959 original size:60 final size:60
Alignment explanation
Indices: 46730866--46730986 Score: 233
Period size: 60 Copynumber: 2.0 Consensus size: 60
46730856 GAACGTTTCG
46730866 AAATATGAATGAAATTTTATGGCCTGTCTTTTAGTTTAATGTTTGTATGTTTGTCCGGTA
1 AAATATGAATGAAATTTTATGGCCTGTCTTTTAGTTTAATGTTTGTATGTTTGTCCGGTA
*
46730926 AAATATGAATGAAATTTTATGGCCTGTCTTTTAGTTTAATGTTTGTATGTTTGTCTGGTA
1 AAATATGAATGAAATTTTATGGCCTGTCTTTTAGTTTAATGTTTGTATGTTTGTCCGGTA
46730986 A
1 A
46730987 CGCCTCGTAC
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 60 1.00
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.47
Consensus pattern (60 bp):
AAATATGAATGAAATTTTATGGCCTGTCTTTTAGTTTAATGTTTGTATGTTTGTCCGGTA
Found at i:46731907 original size:42 final size:42
Alignment explanation
Indices: 46731849--46731959 Score: 145
Period size: 42 Copynumber: 2.6 Consensus size: 42
46731839 ATGTCAATAG
* **
46731849 CCCAGCTATGGTCTTACACGAAA-TCTCAT-ATAGATGTTATAT
1 CCCAGATATGGTCTTACAC-AAAGTCTCATAAT-GATGCCATAT
*
46731891 CCTAGATATGGTCTTACACAAAGTCTCATAATGATGCCATAT
1 CCCAGATATGGTCTTACACAAAGTCTCATAATGATGCCATAT
*
46731933 CCCAGATATGGTCTTACACATAGTCTC
1 CCCAGATATGGTCTTACACAAAGTCTC
46731960 GGTAACCCTA
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
41 3 0.05
42 56 0.92
43 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (42 bp):
CCCAGATATGGTCTTACACAAAGTCTCATAATGATGCCATAT
Found at i:46732169 original size:64 final size:64
Alignment explanation
Indices: 46732097--46732223 Score: 218
Period size: 64 Copynumber: 2.0 Consensus size: 64
46732087 AAAACATAAT
46732097 TAAACATTGCATTATTTAGATAAGAACTTACCTCGATACAAAAATAGTAGGAAATGGAACTAAC
1 TAAACATTGCATTATTTAGATAAGAACTTACCTCGATACAAAAATAGTAGGAAATGGAACTAAC
* * * *
46732161 TAAACATTGCATTATTTAGATAAGAACTTACCTCGGTACAACAATAGTGGGAAATGGACCTAA
1 TAAACATTGCATTATTTAGATAAGAACTTACCTCGATACAAAAATAGTAGGAAATGGAACTAA
46732224 TCGTCAAATA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.27
Consensus pattern (64 bp):
TAAACATTGCATTATTTAGATAAGAACTTACCTCGATACAAAAATAGTAGGAAATGGAACTAAC
Found at i:46751624 original size:16 final size:16
Alignment explanation
Indices: 46751573--46751611 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
46751563 ACATGATAGA
*
46751573 TTTTCTTCCTTC-TTC
1 TTTTCTTCTTTCTTTC
46751588 TTCTTCTTCTTTCTTTC
1 TT-TTCTTCTTTCTTTC
46751605 TTTTCTT
1 TTTTCTT
46751612 TTTTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 14 0.67
17 5 0.24
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTCTTCTTTCTTTC
Found at i:46752772 original size:163 final size:163
Alignment explanation
Indices: 46752494--46752820 Score: 498
Period size: 163 Copynumber: 2.0 Consensus size: 163
46752484 AAGTCTTTAG
* * * * *
46752494 GCTTCTTGGTTCTCTTTGTCAGATCTCAAAATTGGGTCTAGAAGTTTCGAGGATAGTTTTGGATT
1 GCTTCTTGGTTCTCTTTGTCACATCCCAAAATTAGGTCTAAAAGTTTCGAGGATAGTTTTGGAAT
46752559 TTTGGATTGAAATTGAGTTTGAAAATTCAAAGTGAGGTAAACTAAAAATATATTTT-TCTATGGG
66 TTTGGATTGAAATTGAGTTTGAAAATTCAAAGTGAGGTAAACTAAAAATAT-TTTTCTCTATGGG
*
46752623 TTTTTGAAGTTAAATCAATTTATAAAAATAATAT
130 TTTTTGAAATTAAATCAATTTATAAAAATAATAT
*
46752657 GCTTCTTGGTTCTCTTTGTCACATCCCGAAATTAGGTCTAAAAGTTTCGAGGATAGTTTTGGAAT
1 GCTTCTTGGTTCTCTTTGTCACATCCCAAAATTAGGTCTAAAAGTTTCGAGGATAGTTTTGGAAT
* * *
46752722 TTTGGCTTGAAATTGAGTTCTGAAATTTC-AAGTGAGGTAAA-TCGAAAATATTTTTCTCTATGG
66 TTTGGATTGAAATTGAGTT-TGAAAATTCAAAGTGAGGTAAACT-AAAAATATTTTTCTCTATGG
* *
46752785 TTTTTTGAAATTAAATCAATTTCTAAAAATAATAT
129 GTTTTTGAAATTAAATCAATTTATAAAAATAATAT
46752820 G
1 G
46752821 GAAAAGACCT
Statistics
Matches: 149, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
162 5 0.03
163 136 0.91
164 8 0.05
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.40
Consensus pattern (163 bp):
GCTTCTTGGTTCTCTTTGTCACATCCCAAAATTAGGTCTAAAAGTTTCGAGGATAGTTTTGGAAT
TTTGGATTGAAATTGAGTTTGAAAATTCAAAGTGAGGTAAACTAAAAATATTTTTCTCTATGGGT
TTTTGAAATTAAATCAATTTATAAAAATAATAT
Found at i:46755517 original size:80 final size:80
Alignment explanation
Indices: 46755433--46755581 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
46755423 TATGGTAACC
* * * *
46755433 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
46755497 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
46755513 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
46755578 CCGG
66 CCGG
46755582 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:46755523 original size:40 final size:38
Alignment explanation
Indices: 46755474--46755581 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
46755464 ATCACGATTT
*
46755474 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
46755514 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
46755554 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
46755582 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:46758511 original size:3 final size:3
Alignment explanation
Indices: 46758505--46758532 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
46758495 AATAAAAACA
46758505 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
46758533 GGAGGTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:46762168 original size:67 final size:67
Alignment explanation
Indices: 46762058--46762193 Score: 227
Period size: 67 Copynumber: 2.0 Consensus size: 67
46762048 GGAATCCCTC
* **
46762058 CATCTTCTCTATTGCTTGGCCGACCACAATATGTGGATGGGGAGGTGATTTGGTTGCTAATTTAT
1 CATCTTCTCCATTGCTTGGCCGACCACAATATGTGGAAAGGGAGGTGATTTGGTTGCTAATTTAT
46762123 AG
66 AG
* *
46762125 CATCTTCTCCATTGCTTGGCCGACCACAATATGTGGAAAGGGAGGTGATTTGGTTGCTTATTTTT
1 CATCTTCTCCATTGCTTGGCCGACCACAATATGTGGAAAGGGAGGTGATTTGGTTGCTAATTTAT
46762190 AG
66 AG
46762192 CA
1 CA
46762194 CAAAATCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (67 bp):
CATCTTCTCCATTGCTTGGCCGACCACAATATGTGGAAAGGGAGGTGATTTGGTTGCTAATTTAT
AG
Found at i:46762580 original size:18 final size:15
Alignment explanation
Indices: 46762537--46762579 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
46762527 TTCACCCACT
46762537 ACATAATAATAATTA
1 ACATAATAATAATTA
*
46762552 ACATATTAATAATTA
1 ACATAATAATAATTA
46762567 ACATGAA-AATAAT
1 ACAT-AATAATAAT
46762580 ATAATTTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 24 0.96
16 1 0.04
ACGTcount: A:0.58, C:0.07, G:0.02, T:0.33
Consensus pattern (15 bp):
ACATAATAATAATTA
Found at i:46766958 original size:40 final size:40
Alignment explanation
Indices: 46766913--46767080 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
46766903 CGGAATATAA
46766913 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
46766953 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46766993 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
46767033 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46767073 CCGGATAT
1 CCGGATAT
46767081 CATTCAATTT
Statistics
Matches: 107, Mismatches: 20, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
39 1 0.01
40 106 0.99
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46774967 original size:40 final size:40
Alignment explanation
Indices: 46774922--46775088 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
46774912 CGGAATATAA
46774922 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
46774962 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
46775002 CCGGATATAGCCACTAGCACAATTGCCTTC-GGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * * *
46775041 CCGGATATAATTTCCAGCATAATTGTCTTCGGGGCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
46775081 CCGGATAT
1 CCGGATAT
46775089 CATTCAATTT
Statistics
Matches: 105, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
39 32 0.30
40 73 0.70
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:46777414 original size:29 final size:29
Alignment explanation
Indices: 46777381--46777463 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
46777371 GTGACGAGAT
46777381 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
46777410 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
46777439 TGGCACTAAGTGTGCATGCTGGAAA
1 TGGCACTAAGTGTGCATGCTGGAAA
46777464 AAATACGGCA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:46777503 original size:59 final size:58
Alignment explanation
Indices: 46777377--46777512 Score: 159
Period size: 59 Copynumber: 2.3 Consensus size: 58
46777367 TACGGTGACG
* * *
46777377 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
46777434 ATATATGGCACTAAGTGTGCATGCTGGAAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGG-AAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
46777493 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
46777513 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
57 3 0.05
58 22 0.33
59 40 0.61
60 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:46784095 original size:20 final size:19
Alignment explanation
Indices: 46784060--46784115 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
46784050 TAGGAAGAAT
46784060 AAAGAAATGAAAAAAAAAA
1 AAAGAAATGAAAAAAAAAA
* *
46784079 AAAGAATATG-AAGAAAAAC
1 AAAGAA-ATGAAAAAAAAAA
*
46784098 AAAGAAAAGAAAAAAAAA
1 AAAGAAATGAAAAAAAAA
46784116 GTGTTCATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 2 0.06
19 26 0.84
20 3 0.10
ACGTcount: A:0.80, C:0.02, G:0.12, T:0.05
Consensus pattern (19 bp):
AAAGAAATGAAAAAAAAAA
Found at i:46785373 original size:29 final size:29
Alignment explanation
Indices: 46785272--46785365 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
46785262 GTGACGAGAT
46785272 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
46785301 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
46785330 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
46785359 CGGCACT
1 TGGCACT
46785366 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:46785390 original size:58 final size:58
Alignment explanation
Indices: 46785268--46785402 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
46785258 TACGGTGACG
* * *
46785268 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
46785325 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
46785383 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
46785403 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 62 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:46788109 original size:43 final size:42
Alignment explanation
Indices: 46788027--46788182 Score: 138
Period size: 43 Copynumber: 3.7 Consensus size: 42
46788017 TGAGACATCG
* * *
46788027 TGTAAGACCGTGTCTGGGACA-CAGGCCTCG-ATTAAGATTTACG
1 TGTAAGACCATGTCTGGGACATC-GGCATCGTATT--GATTTACA
*
46788070 TATAAGACCATGTCTGGGACATCGGCATCGTATCTGATTT-CA
1 TGTAAGACCATGTCTGGGACATCGGCATCGTAT-TGATTTACA
* ** * *
46788112 TGTAAGACCCTGTCTGGGACAAAGGCATCGATATTGAATTAAA
1 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTGATTTACA
* * *
46788155 TGTAAGACCACGTCTGAGACGTCGGCAT
1 TGTAAGACCATGTCTGGGACATCGGCAT
46788183 TGTACTTGTT
Statistics
Matches: 92, Mismatches: 16, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
42 32 0.35
43 56 0.61
44 3 0.03
45 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACATCGGCATCGTATTGATTTACA
Found at i:46788170 original size:85 final size:85
Alignment explanation
Indices: 46788027--46788182 Score: 197
Period size: 85 Copynumber: 1.8 Consensus size: 85
46788017 TGAGACATCG
* * * * ** * *
46788027 TGTAAGACCGTGTCTGGGACACAGGCCTCGATTAAGATTTACGTATAAGACCATGTCTGGGACAT
1 TGTAAGACCCTGTCTGGGACAAAGGCATCGATTAAGAATTAAATATAAGACCACGTCTGAGACAT
46788092 CGGCATCGTATCTGATTTCA
66 CGGCATCGTATCTGATTTCA
* * *
46788112 TGTAAGACCCTGTCTGGGACAAAGGCATCGA-TATTGAATTAAATGTAAGACCACGTCTGAGACG
1 TGTAAGACCCTGTCTGGGACAAAGGCATCGATTA-AGAATTAAATATAAGACCACGTCTGAGACA
46788176 TCGGCAT
65 TCGGCAT
46788183 TGTACTTGTT
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 2 0.03
85 57 0.97
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (85 bp):
TGTAAGACCCTGTCTGGGACAAAGGCATCGATTAAGAATTAAATATAAGACCACGTCTGAGACAT
CGGCATCGTATCTGATTTCA
Found at i:46788962 original size:19 final size:19
Alignment explanation
Indices: 46788935--46788977 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
46788925 TTTGGCACGG
*
46788935 CTGGATCACATGGGCGTGT
1 CTGGTTCACATGGGCGTGT
46788954 CTGGTTCACATGGGCGTGT
1 CTGGTTCACATGGGCGTGT
46788973 CTGGT
1 CTGGT
46788978 GCCCGTGTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.12, C:0.21, G:0.37, T:0.30
Consensus pattern (19 bp):
CTGGTTCACATGGGCGTGT
Found at i:46791240 original size:29 final size:29
Alignment explanation
Indices: 46791195--46791252 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
46791185 TCCTTCACTC
*
46791195 TATCTCCTTCCAGCAAC-CTACTACATACA
1 TATCTCCTTCCAACAACGC-ACTACATACA
46791224 TATCTCCTTCCAACAACGCACTACATACA
1 TATCTCCTTCCAACAACGCACTACATACA
46791253 ATAGGCAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.33, C:0.38, G:0.03, T:0.26
Consensus pattern (29 bp):
TATCTCCTTCCAACAACGCACTACATACA
Found at i:46803007 original size:345 final size:345
Alignment explanation
Indices: 46802365--46803073 Score: 1021
Period size: 345 Copynumber: 2.1 Consensus size: 345
46802355 AAGTGTTTTG
* * * * *
46802365 GAAAGACTTAATTTCGTCAATAAAGGGTTAAACAAGTGGTTTCAATGGATTCGTCGAGAAAAAAA
1 GAAAGACTTAATTTCATTAATAAAGGGTTAAACAAGTGGTTTCAACGAATTCATCGAGAAAAAAA
* *
46802430 GCATACGATGCAAACTCTTCAATCTCAACTTGATCAGTTAAGCATTTTGTACCCAACAGATGATG
66 GCATACAATGCAAACTCTTCAATCTCAACTTGATCACTTAAGCATTTTGTACCCAACAGATGATG
46802495 TGTTGATGGAGCTAGTGGATGTAAAGTTAGCTATGAATCTTAAGGCAGACAAAGAGGAGTTGTAT
131 TGTTGATGGAGCTAGTGGATGTAAAGTTAGCTATGAATCTTAAGGCAGACAAAGAGGAGTTGTAT
*
46802560 TAGGAGCAACGTGCGAGAGCAGACTGGTTGAAATTCGGGGATAGGAACACATCTTTTTTATCAAT
196 TAGGAGCAACGTGCGAAAGCAGACTGGTTGAAATTCGGGGATAGGAACACATCTTTTTTATCAAT
* * * * *
46802625 TTGCAACATAGAGAAAGCGATTGAATGGTATTAAATGTTCATAGGATAATGCGGGAAAGGTTGTC
261 TTGCAACATAGAGAAAGCGATTGAATAGTAATAAATGTTCACAGGATAAAGCAGGAAAGGTTGTC
* *
46802690 GAATGAGAGAATGAGGT-GA
326 GAAGGAAAGAATGAGGTAGA
* * * *
46802709 GAGAGACTTAATTTCATTAGTGAAGGGTTAAACAGGTGGTTTCAACGAATTCATCGAGAAAAAAA
1 GAAAGACTTAATTTCATTAATAAAGGGTTAAACAAGTGGTTTCAACGAATTCATCGAGAAAAAAA
* * * *
46802774 GCTTATAATGCAAACTCTTCAATCTCAACTTGATCACTTAAGCCCTTTTGTACCCAACGGATGAT
66 GCATACAATGCAAACTCTTCAATCTCAACTTGATCACTTAAG-CATTTTGTACCCAACAGATGAT
* *
46802839 GTGTTGATGGAGCTAGTGGATGTGAAGTTAGCTATGAATCTTGAGGC-GAACAAAGAGGAGTTGT
130 GTGTTGATGGAGCTAGTGGATGTAAAGTTAGCTATGAATCTTAAGGCAG-ACAAAGAGGAGTTGT
* * ** * * *
46802903 ATTGGGAGTAGTGTGTGAAAGTAGACTGGTTGAAATTCGGGGA-AGGAACATATCTTTTTTTATC
194 ATTAGGAGCAACGTGCGAAAGCAGACTGGTTGAAATTCGGGGATAGGAACACATC-TTTTTTATC
* * *
46802967 GATTTGCAACATAGAGAAAGC-ATTTGAATAGTAATAAATGTTTACAGGATAAAGCAGGAAGGGT
258 AATTTGCAACATAGAGAAAGCGA-TTGAATAGTAATAAATGTTCACAGGATAAAGCAGGAAAGGT
*
46803031 TGTCGAAGGAAAGAATGAGGTAGG
322 TGTCGAAGGAAAGAATGAGGTAGA
*
46803055 GAAAGACTTATTTTCATTA
1 GAAAGACTTAATTTCATTA
46803074 TAATGGCATA
Statistics
Matches: 322, Mismatches: 38, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
344 106 0.33
345 198 0.61
346 18 0.06
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (345 bp):
GAAAGACTTAATTTCATTAATAAAGGGTTAAACAAGTGGTTTCAACGAATTCATCGAGAAAAAAA
GCATACAATGCAAACTCTTCAATCTCAACTTGATCACTTAAGCATTTTGTACCCAACAGATGATG
TGTTGATGGAGCTAGTGGATGTAAAGTTAGCTATGAATCTTAAGGCAGACAAAGAGGAGTTGTAT
TAGGAGCAACGTGCGAAAGCAGACTGGTTGAAATTCGGGGATAGGAACACATCTTTTTTATCAAT
TTGCAACATAGAGAAAGCGATTGAATAGTAATAAATGTTCACAGGATAAAGCAGGAAAGGTTGTC
GAAGGAAAGAATGAGGTAGA
Found at i:46804954 original size:20 final size:19
Alignment explanation
Indices: 46804931--46804996 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
46804921 TTTATACAGA
*
46804931 TTTTCCTTCTT-TTTTTCC
1 TTTTTCTTCTTCTTTTTCC
*
46804949 ATTTTTCTTTTTCTTTTTCC
1 -TTTTTCTTCTTCTTTTTCC
*
46804969 TTTTT-TTC-GCTGTTTTCC
1 TTTTTCTTCTTCT-TTTTCC
46804987 TTTCTTCTTC
1 TTT-TTCTTC
46804997 CCAATCTCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 2 0.05
18 11 0.28
19 16 0.41
20 10 0.26
ACGTcount: A:0.02, C:0.24, G:0.03, T:0.71
Consensus pattern (19 bp):
TTTTTCTTCTTCTTTTTCC
Found at i:46807920 original size:45 final size:45
Alignment explanation
Indices: 46807856--46807959 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
46807846 GATGTCGTTG
* * *
46807856 TATCTTCCAACCACGGTCTTATACATT-TCCGAAGTGA-TGCCATAC
1 TATCTTTCAACTATGGTCTTATACATTGT-CGAAGT-ATTGCCATAC
* * * *
46807901 TATCTTTCAACTATGGTCTTATTCATTGTCGATGTATTGCTATAG
1 TATCTTTCAACTATGGTCTTATACATTGTCGAAGTATTGCCATAC
46807946 TATCTTTCAACTAT
1 TATCTTTCAACTAT
46807960 AATCTTATTC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 1 0.02
45 48 0.96
46 1 0.02
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.40
Consensus pattern (45 bp):
TATCTTTCAACTATGGTCTTATACATTGTCGAAGTATTGCCATAC
Found at i:46807966 original size:45 final size:46
Alignment explanation
Indices: 46807892--46808017 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 46
46807882 TTCCGAAGTG
* * *
46807892 ATGCCATACTATCTTTCAACTATGGTCTTATTCATTGTC-GATGTA
1 ATGCCATAGTATCTTTCAACTATGATCTTATTCATTATCAGATGTA
* * * ** *
46807937 TTGCTATAGTATCTTTCAACTATAATCTTATTC-GCATCAGATTTA
1 ATGCCATAGTATCTTTCAACTATGATCTTATTCATTATCAGATGTA
*
46807982 ATGCCATAGTATCTTTCAACTATGCTCTTATTCATT
1 ATGCCATAGTATCTTTCAACTATGATCTTATTCATT
46808018 CCGGTTTAAT
Statistics
Matches: 64, Mismatches: 15, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
44 2 0.03
45 62 0.97
ACGTcount: A:0.26, C:0.20, G:0.10, T:0.44
Consensus pattern (46 bp):
ATGCCATAGTATCTTTCAACTATGATCTTATTCATTATCAGATGTA
Found at i:46814626 original size:46 final size:45
Alignment explanation
Indices: 46814576--46814751 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
46814566 TGGTTGAGCA
46814576 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
46814622 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
46814669 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
46814715 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
46814752 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:46814732 original size:93 final size:93
Alignment explanation
Indices: 46814573--46814743 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
46814563 GGATGGTTGA
* *
46814573 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46814638 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* *
46814666 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
46814731 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46814744 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:46829792 original size:30 final size:30
Alignment explanation
Indices: 46829728--46829794 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 30
46829718 TGTTAATGGG
*
46829728 TGATTGATTTGTCATTTTCGATAACGTTAG
1 TGATTGATTTGTCATTTTCGATAACGTTAA
*
46829758 TGATTGATTTGTTATTTTTCGA-AA-GTTGAA
1 TGATTGATTTGTCA-TTTTCGATAACGTT-AA
46829788 TGATTGA
1 TGATTGA
46829795 ATTGAAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 3 0.09
30 23 0.70
31 7 0.21
ACGTcount: A:0.25, C:0.06, G:0.21, T:0.48
Consensus pattern (30 bp):
TGATTGATTTGTCATTTTCGATAACGTTAA
Found at i:46834284 original size:13 final size:15
Alignment explanation
Indices: 46834255--46834287 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
46834245 GGTGAAGAAA
46834255 ATAAATATTTGATAT
1 ATAAATATTTGATAT
46834270 ATAAATA-TT-ATAT
1 ATAAATATTTGATAT
46834283 ATAAA
1 ATAAA
46834288 GAAAAATATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 2 0.11
15 7 0.39
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAAATATTTGATAT
Found at i:46839854 original size:79 final size:81
Alignment explanation
Indices: 46839745--46839927 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
46839735 TACTCGTTCA
* * * *
46839745 AATGCCTTAGGGACATAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
46839808 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
46839825 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
46839888 TATAGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
46839904 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
46839928 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 27 0.30
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:46839927 original size:40 final size:40
Alignment explanation
Indices: 46839724--46839927 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
46839714 CGGAATTTAT
** * *
46839724 CCGGATATAGCT-ACTCGTTCAAATGCCTTAGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
46839764 CCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46839804 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
46839843 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
46839883 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
46839923 CCGGA
1 CCGGA
46839928 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:46844322 original size:98 final size:98
Alignment explanation
Indices: 46844148--46844343 Score: 376
Period size: 98 Copynumber: 2.0 Consensus size: 98
46844138 TAAATTGTGC
46844148 ATATTAAAATAAGAATATATAAAAAATATTAAAATAAAGTTTTAGTTGAATGATAAACATAACAT
1 ATATTAAAATAAGAATATATAAAAAATATTAAAATAAAGTTTTAGTTGAATGATAAACATAACAT
46844213 TTTTCTATCTAATTGGTGCAAATTTAAATCTTA
66 TTTTCTATCTAATTGGTGCAAATTTAAATCTTA
46844246 ATATTAAAATAAGAATATATAAAAAAATATTAAAATAAAGTTTTAGTTGAATGATAAACATAACA
1 ATATTAAAATAAGAATATAT-AAAAAATATTAAAATAAAGTTTTAGTTGAATGATAAACATAACA
46844311 -TTTTCTATCTAATTGGTGCAAATTTAAATCTTA
65 TTTTTCTATCTAATTGGTGCAAATTTAAATCTTA
46844344 CTATATATTT
Statistics
Matches: 97, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
98 53 0.55
99 44 0.45
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.37
Consensus pattern (98 bp):
ATATTAAAATAAGAATATATAAAAAATATTAAAATAAAGTTTTAGTTGAATGATAAACATAACAT
TTTTCTATCTAATTGGTGCAAATTTAAATCTTA
Found at i:46844956 original size:17 final size:17
Alignment explanation
Indices: 46844934--46844966 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
46844924 CCTTTTTTAA
*
46844934 AGTTAAAAGTCAAAACC
1 AGTTAAAAGACAAAACC
46844951 AGTTAAAAGACAAAAC
1 AGTTAAAAGACAAAAC
46844967 TATGTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.15, G:0.12, T:0.15
Consensus pattern (17 bp):
AGTTAAAAGACAAAACC
Found at i:46848563 original size:64 final size:64
Alignment explanation
Indices: 46848482--46848665 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
46848472 AGACATTATG
* * * *
46848482 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCAAGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
46848546 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
46848611 AA
63 AA
* * *
46848613 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
46848666 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.26
66 21 0.21
67 30 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.22
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:46849747 original size:2 final size:2
Alignment explanation
Indices: 46849740--46849778 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
46849730 GTATCATGAC
46849740 AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46849779 GACTAGTCTC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:46851553 original size:41 final size:40
Alignment explanation
Indices: 46851381--46851567 Score: 292
Period size: 40 Copynumber: 4.7 Consensus size: 40
46851371 AACCCAAGTA
* * *
46851381 CCTTCGGGATTTAG-CCGGATATAG-AACCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCA-CTAGCACAAATG
46851420 CCTTC-GGACTTAGCCC-GATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
46851458 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
46851498 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAACTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA-TG
46851539 CCTTCGGGACTTAGCCCGGATATAGTCAC
1 CCTTCGGGACTTAGCCCGGATATAGTCAC
46851568 NCCTTACGGC
Statistics
Matches: 138, Mismatches: 5, Indels: 8
0.91 0.03 0.05
Matches are distributed among these distances:
38 30 0.22
39 19 0.14
40 58 0.42
41 31 0.22
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:46857397 original size:40 final size:39
Alignment explanation
Indices: 46857352--46857481 Score: 163
Period size: 40 Copynumber: 3.3 Consensus size: 39
46857342 CGGAATACAA
46857352 CCGGATATAACCACGTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* *
46857392 CCGGATAGAACGACTTGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAACCAC-TGCACGAATGCCTTCGGGTCTTAGC
* * * *
46857432 CCGGATGTAGCCGCTAGCAC-AATTGCCTTCGGGTCTTAAC
1 CCGGATATAACCACT-GCACGAA-TGCCTTCGGGTCTTAGC
46857472 CCGGATATAA
1 CCGGATATAA
46857482 TTTCCAGCAT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.23, C:0.28, G:0.25, T:0.23
Consensus pattern (39 bp):
CCGGATATAACCACTGCACGAATGCCTTCGGGTCTTAGC
Found at i:46864918 original size:20 final size:21
Alignment explanation
Indices: 46864879--46864918 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
46864869 GTTATAATGA
46864879 CCACACAGGCGTGTTGCCCTT
1 CCACACAGGCGTGTTGCCCTT
*
46864900 CCACACGGGCGTG-TGCCCT
1 CCACACAGGCGTGTTGCCCT
46864919 GTTTCAAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.12, C:0.40, G:0.28, T:0.20
Consensus pattern (21 bp):
CCACACAGGCGTGTTGCCCTT
Found at i:46871802 original size:71 final size:71
Alignment explanation
Indices: 46871686--46871830 Score: 281
Period size: 71 Copynumber: 2.0 Consensus size: 71
46871676 GTGTGCGATT
46871686 TAAACTAGCTTCGGCTACTTGAGGCACTAAATGTGCGATACCAACTTGGTTTCGGGTAATTGAGA
1 TAAACTAGCTTCGGCTACTTGAGGCACTAAATGTGCGATACCAACTTGGTTTCGGGTAATTGAGA
46871751 TGGCAC
66 TGGCAC
*
46871757 TAAACTAGCTTCGGCTACTTGAGGCACTAAGTGTGCGATACCAACTTGGTTTCGGGTAATTGAGA
1 TAAACTAGCTTCGGCTACTTGAGGCACTAAATGTGCGATACCAACTTGGTTTCGGGTAATTGAGA
46871822 TGGCAC
66 TGGCAC
46871828 TAA
1 TAA
46871831 GTGTATGGAA
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 73 1.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (71 bp):
TAAACTAGCTTCGGCTACTTGAGGCACTAAATGTGCGATACCAACTTGGTTTCGGGTAATTGAGA
TGGCAC
Found at i:46878606 original size:51 final size:51
Alignment explanation
Indices: 46878530--46878633 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 51
46878520 AAGCTTACGA
*
46878530 AAGCCCGATACTACCCTTAAATCAATCAAGAGTTAATCTGCAAAGTTTTTC
1 AAGCCCGATACTACCCTTAAATCAATCAAGAGTTAATCTGAAAAGTTTTTC
* * * * * * *
46878581 AAGCCTGATAGTATCCTTAAATCAATCAATATTTAATTTGAAAATTTTTTC
1 AAGCCCGATACTACCCTTAAATCAATCAAGAGTTAATCTGAAAAGTTTTTC
46878632 AA
1 AA
46878634 ACATTCAAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.35
Consensus pattern (51 bp):
AAGCCCGATACTACCCTTAAATCAATCAAGAGTTAATCTGAAAAGTTTTTC
Found at i:46879626 original size:28 final size:28
Alignment explanation
Indices: 46879586--46879662 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 28
46879576 AAGATCAGGG
* * *
46879586 TTGCTCACGCAAGTTGACATTTATGAAT
1 TTGCTCACACAAGATGACATTTAAGAAT
*
46879614 TTGCTCACACAAGCT-ACAATTTTAAGAAT
1 TTGCTCACACAAGATGAC-A-TTTAAGAAT
*
46879643 TTTCTCACACAAGATGACAT
1 TTGCTCACACAAGATGACAT
46879663 CGTAATCAGT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
27 2 0.05
28 15 0.37
29 22 0.54
30 2 0.05
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (28 bp):
TTGCTCACACAAGATGACATTTAAGAAT
Found at i:46880787 original size:15 final size:16
Alignment explanation
Indices: 46880761--46880792 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
46880751 TAATCCTTAA
46880761 TTAATCTAATTAATCT
1 TTAATCTAATTAATCT
46880777 TTAAT-TAATTAATCT
1 TTAATCTAATTAATCT
46880792 T
1 T
46880793 AACCTTAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (16 bp):
TTAATCTAATTAATCT
Found at i:46880800 original size:20 final size:20
Alignment explanation
Indices: 46880750--46880789 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
46880740 AAATAATTCG
46880750 TTAATCCTTAATTAATCTAA
1 TTAATCCTTAATTAATCTAA
*
46880770 TTAATCTTTAATTAAT-TAA
1 TTAATCCTTAATTAATCTAA
46880789 T
1 T
46880790 CTTAACCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAATCCTTAATTAATCTAA
Found at i:46884115 original size:12 final size:12
Alignment explanation
Indices: 46884098--46884124 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
46884088 ATAAGTAGAT
46884098 ATTAATGATTAA
1 ATTAATGATTAA
46884110 ATTAATGATTAA
1 ATTAATGATTAA
46884122 ATT
1 ATT
46884125 CTTTCATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.44
Consensus pattern (12 bp):
ATTAATGATTAA
Found at i:46886731 original size:25 final size:24
Alignment explanation
Indices: 46886697--46886837 Score: 137
Period size: 25 Copynumber: 5.8 Consensus size: 24
46886687 TTAGGGTTAC
* *
46886697 CGATTCTCAGCTCGAAAGAGCTTAT
1 CGATT-TCAGCTCGTATGAGCTTAT
46886722 CGATATTCAGCTCGTATGAGCTTAT
1 CGAT-TTCAGCTCGTATGAGCTTAT
* *
46886747 CGATATTTAGCTCGTATGAGCTTAC
1 CGAT-TTCAGCTCGTATGAGCTTAT
46886772 CG--TT-AGCTCGTATGAGCTTAT
1 CGATTTCAGCTCGTATGAGCTTAT
* * * *
46886793 CGATTACAGCTCGTAAGAGCCTAC
1 CGATTTCAGCTCGTATGAGCTTAT
46886817 CGA-TTCAAAGCTCGTATGAGC
1 CGATTTC--AGCTCGTATGAGC
46886838 ATACATGTAC
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
21 18 0.18
22 2 0.02
23 3 0.03
24 17 0.17
25 58 0.59
26 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (24 bp):
CGATTTCAGCTCGTATGAGCTTAT
Found at i:46886788 original size:46 final size:47
Alignment explanation
Indices: 46886730--46886837 Score: 139
Period size: 46 Copynumber: 2.3 Consensus size: 47
46886720 ATCGATATTC
** * *
46886730 AGCTCGTATGAGCTTATCGATATTTAGCTCGTATGAGCTTACCG-TT-
1 AGCTCGTATGAGCTTATCGAT-TACAGCTCGTAAGAGCCTACCGATTA
46886776 AGCTCGTATGAGCTTATCGATTACAGCTCGTAAGAGCCTACCGATTCAA
1 AGCTCGTATGAGCTTATCGATTACAGCTCGTAAGAGCCTACCGATT--A
46886825 AGCTCGTATGAGC
1 AGCTCGTATGAGC
46886838 ATACATGTAC
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
45 18 0.33
46 23 0.43
49 13 0.24
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (47 bp):
AGCTCGTATGAGCTTATCGATTACAGCTCGTAAGAGCCTACCGATTA
Found at i:46886833 original size:70 final size:71
Alignment explanation
Indices: 46886705--46886837 Score: 171
Period size: 70 Copynumber: 1.9 Consensus size: 71
46886695 ACCGATTCTC
* * * * **
46886705 AGCTCGAAAGAGCTTATCGATATTCAGCTCGTATGAGCTTATCGATATTTAGCTCGTATGAGCTT
1 AGCTCGAAAGAGCTTATCGATATACAGCTCGTAAGAGCCTACCGATATAAAGCTCGTATGAGCTT
46886770 ACCGTT
66 ACCGTT
* *
46886776 AGCTCGTATGAGCTTATCGAT-TACAGCTCGTAAGAGCCTACCGAT-TCAAAGCTCGTATGAGC
1 AGCTCGAAAGAGCTTATCGATATACAGCTCGTAAGAGCCTACCGATAT-AAAGCTCGTATGAGC
46886838 ATACATGTAC
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
69 1 0.02
70 33 0.62
71 19 0.36
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (71 bp):
AGCTCGAAAGAGCTTATCGATATACAGCTCGTAAGAGCCTACCGATATAAAGCTCGTATGAGCTT
ACCGTT
Found at i:46892028 original size:40 final size:39
Alignment explanation
Indices: 46891955--46892161 Score: 173
Period size: 40 Copynumber: 5.2 Consensus size: 39
46891945 CAATTGAATG
* * * *
46891955 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAATT
* * * * **
46891995 ATACCCGGGTTAAGACCCGAAGGCCATTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTGTGCAAGTAATT
* **
46892035 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATT
* * **
46892075 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTAATT
* * **
46892115 CTATCCGGGCTAAGACCCGAA-GCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTAATT
46892154 ATATCCGG
1 ATATCCGG
46892162 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
38 2 0.01
39 24 0.17
40 108 0.78
41 4 0.03
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTAATT
Found at i:46892093 original size:80 final size:80
Alignment explanation
Indices: 46891957--46892161 Score: 218
Period size: 80 Copynumber: 2.6 Consensus size: 80
46891947 ATTGAATGAT
* * ** * * * *
46891957 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATACCCGGGTTAAGACCCGAAGGCCA-
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGG-CAT
*
46892021 TTGTGCTAGT-GACCAC
65 TTGTGCAAGTCGACC-C
* * *
46892037 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
** *
46892102 TGTGCAAGTCGTTCT
66 TGTGCAAGTCGACCC
* *
46892117 ATCCGGGCTAAGACCCGAA-GCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
46892162 TTGTATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 25 0.24
80 78 0.74
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTCGACCC
Found at i:46896879 original size:40 final size:39
Alignment explanation
Indices: 46896784--46896990 Score: 186
Period size: 40 Copynumber: 5.2 Consensus size: 39
46896774 CAATTGAATG
* * * * *
46896784 ATATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAAT-
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGTGATC
* * *
46896823 ATATCCGGGTTAAGACCCGAAGGCCATTGTGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTGTGCAAGTGATC
* *
46896863 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAG-TGATC
* * *
46896903 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTTC
1 ATATCCGGGCTAAGACCCGAAGGCA-TTGTGCAAGT-GATC
* * *
46896944 -TATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATT-GTGCAAGTGATC
46896983 ATATCCGG
1 ATATCCGG
46896991 TTGTATTCCG
Statistics
Matches: 140, Mismatches: 19, Indels: 17
0.80 0.11 0.10
Matches are distributed among these distances:
39 39 0.28
40 96 0.69
41 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCATTGTGCAAGTGATC
Found at i:46896933 original size:80 final size:80
Alignment explanation
Indices: 46896825--46896990 Score: 219
Period size: 80 Copynumber: 2.1 Consensus size: 80
46896815 CTAGTAATAT
* *
46896825 ATCCGGGTTAAGACCCGAAGGCCATTGTGCTAGT-GACCACATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGACC-CATCCGGGCTAAGACCCGAAGGCAT
*
46896889 TCGTGCAAGTTGTTAA
65 TCGTGCAAGTGGTTAA
* ** *
46896905 ATCCGGGCTAATACCCGAAGG-CATTTGTGCAAGTCGTTCTATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCCA-TTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCAT
* *
46896969 TCGTGCATGTGGTTAT
65 TCGTGCAAGTGGTTAA
46896985 ATCCGG
1 ATCCGG
46896991 TTGTATTCCG
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
79 2 0.03
80 71 0.95
81 2 0.03
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCCATTGTGCAAGTCGACCCATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTGGTTAA
Found at i:46904947 original size:80 final size:80
Alignment explanation
Indices: 46904800--46905004 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
46904790 ATTGAATGAT
* * ** * * *
46904800 ATCCGGGCTAAGTCCCGAAGACATTTATGCTAGTAATTATA-CCGGGTTAAGACCCGAAGGCCAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
*
46904864 TGTGCTAGT-GACCAC
66 TGTGCAAGTCGACC-C
* * *
46904879 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGCTAATACCCGAAGG-CAT
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCA-
** *
46904943 TTGTGCAAGTCGTTCT
65 TTGTGCAAGTCGACCC
* *
46904959 ATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTTATATCCGG
1 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGG
46905005 TTGTATTCCG
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 35 0.33
80 69 0.65
81 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTAGTTATATCCGGGCTAAGACCCGAAGGCCAT
TGTGCAAGTCGACCC
Found at i:46905002 original size:40 final size:40
Alignment explanation
Indices: 46904798--46905004 Score: 188
Period size: 40 Copynumber: 5.2 Consensus size: 40
46904788 CAATTGAATG
* * ** **
46904798 ATATCCGGGCTAAGTCCCGAAGACATTTATGC-TAGTAATT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCAT-GTGGTT
* ***
46904838 ATA-CCGGGTTAAGACCCGAAGGCCATT-GTGC-TAGTGACC
1 ATATCCGGGCTAAGACCCGAAGG-CATTCGTGCAT-GTGGTT
* * *
46904877 ACATCCGGGCTAAGACCCGAAGGCATTCGTGCAAGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
* * * * *
46904917 AAATCCGGGCTAATACCCGAAGGCATTTGTGCAAGTCGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
*
46904957 CTATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
46904997 ATATCCGG
1 ATATCCGG
46905005 TTGTATTCCG
Statistics
Matches: 138, Mismatches: 25, Indels: 8
0.81 0.15 0.05
Matches are distributed among these distances:
39 30 0.22
40 108 0.78
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTCGTGCATGTGGTT
Found at i:46910637 original size:18 final size:18
Alignment explanation
Indices: 46910603--46910643 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
46910593 ATACTTACTT
**
46910603 CTTACTATTCATGCATTC
1 CTTACTATTCACACATTC
*
46910621 TTTACTATTCACACATTC
1 CTTACTATTCACACATTC
46910639 CTTAC
1 CTTAC
46910644 AGACTTACTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.44
Consensus pattern (18 bp):
CTTACTATTCACACATTC
Found at i:46914963 original size:24 final size:24
Alignment explanation
Indices: 46914695--46914961 Score: 444
Period size: 24 Copynumber: 11.1 Consensus size: 24
46914685 GCAAAGACCA
46914695 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
46914719 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
46914743 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
* * *
46914767 TGTGGCACTATGTGTGTGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
46914791 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
* *
46914815 TGTGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
46914839 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
46914863 TATGGCACTATGTGTGCGATTCAC
1 TATGGCACTATGTGTGCGATTTAC
46914887 TATGGCACTATGTGTGCGATTTAC
1 TATGGCACTATGTGTGCGATTTAC
*
46914911 TATGGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
* *
46914935 TATAGCACTATGTGTGCGATTTGC
1 TATGGCACTATGTGTGCGATTTAC
46914959 TAT
1 TAT
46914962 AGTCACATTC
Statistics
Matches: 227, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 227 1.00
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.37
Consensus pattern (24 bp):
TATGGCACTATGTGTGCGATTTAC
Found at i:46932242 original size:40 final size:40
Alignment explanation
Indices: 46932197--46932381 Score: 273
Period size: 40 Copynumber: 4.7 Consensus size: 40
46932187 GCCACTAGCT
* * *
46932197 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
46932237 GAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
*
46932276 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
* * *
46932316 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
**
46932356 TGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46932382 ATTAGCCACT
Statistics
Matches: 134, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 36 0.27
40 98 0.73
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCA
Found at i:46932325 original size:79 final size:80
Alignment explanation
Indices: 46932197--46932381 Score: 273
Period size: 79 Copynumber: 2.3 Consensus size: 80
46932187 GCCACTAGCT
* * * * *
46932197 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCAGAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
46932262 -TATAATAACTCGCA
66 ATATAATAACTCGCA
*
46932276 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
46932341 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
**
46932356 TGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46932382 ATTAGCCACT
Statistics
Matches: 95, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 59 0.62
80 36 0.38
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:46932402 original size:40 final size:39
Alignment explanation
Indices: 46932197--46932416 Score: 241
Period size: 40 Copynumber: 5.5 Consensus size: 39
46932187 GCCACTAGCT
* *
46932197 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
* *
46932237 GAAATGCCTTCGGGACTTAGCCCGG-TATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATAT-AGAACTCGCA
46932276 CAAATGCCTTCGGGACTTAGCCCGGATATA-ATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGA-A-CTCGCA
* *
46932316 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAG-AACTCGCA
** * * *
46932356 TGAATGCCTTCGGGACTTAGCCCGGA-ATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAG-AACTCGCA
46932396 CAAATG-CTCTCGGGACTTAGC
1 CAAATGCCT-TCGGGACTTAGC
46932417 TCGGTTATCA
Statistics
Matches: 156, Mismatches: 16, Indels: 16
0.83 0.09 0.09
Matches are distributed among these distances:
38 1 0.01
39 39 0.25
40 115 0.74
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGAACTCGCA
Found at i:46935802 original size:5 final size:5
Alignment explanation
Indices: 46935789--46935823 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
46935779 GTATGATTGT
*
46935789 ATGAT ATGAC ATGAC ATGAC ATGAC ATGAC ATGAC
1 ATGAC ATGAC ATGAC ATGAC ATGAC ATGAC ATGAC
46935824 TGTATGATGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.23
Consensus pattern (5 bp):
ATGAC
Found at i:46936066 original size:18 final size:18
Alignment explanation
Indices: 46936043--46936091 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
46936033 AAGACTTATA
46936043 TACTGTTACTGCACTGAT
1 TACTGTTACTGCACTGAT
* * *
46936061 TACTGTTATTGCATTGTT
1 TACTGTTACTGCACTGAT
*
46936079 TATTGTTACTGCA
1 TACTGTTACTGCA
46936092 ATGGGCCAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.16, T:0.47
Consensus pattern (18 bp):
TACTGTTACTGCACTGAT
Found at i:46942153 original size:2 final size:2
Alignment explanation
Indices: 46942146--46942184 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
46942136 TACAACTATT
46942146 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
46942185 TCAAAACTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:46942607 original size:32 final size:32
Alignment explanation
Indices: 46942566--46942628 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
46942556 TAAAAAATAC
46942566 TTTACTATTTCTAAGTTTACAATTCCACCATA
1 TTTACTATTTCTAAGTTTACAATTCCACCATA
46942598 TTTACTATTTCTAAGTTTACAATTCCACCAT
1 TTTACTATTTCTAAGTTTACAATTCCACCAT
46942629 TAAATATTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.30, C:0.22, G:0.03, T:0.44
Consensus pattern (32 bp):
TTTACTATTTCTAAGTTTACAATTCCACCATA
Found at i:46955931 original size:39 final size:40
Alignment explanation
Indices: 46955768--46955933 Score: 171
Period size: 40 Copynumber: 4.2 Consensus size: 40
46955758 AAATTGAATG
* * **
46955768 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTG-GAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGTGATT
* * **
46955807 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
*
46955847 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTGATT
* *
46955887 CTATCCGGGCTAAGACCCGAA-GCATTTGTGC-ACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGA-GTGATT
46955926 ATATCCGG
1 ATATCCGG
46955934 TTATATTCCG
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
38 1 0.01
39 34 0.32
40 70 0.67
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATT
Found at i:46963753 original size:29 final size:29
Alignment explanation
Indices: 46963652--46963745 Score: 170
Period size: 29 Copynumber: 3.2 Consensus size: 29
46963642 GTGACGAGAT
46963652 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
46963681 TGGCACTAAGTGTGCATGCTGGAAATATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
46963710 TGGCACTAAGTGTGCATGCTGGAAAAATA
1 TGGCACTAAGTGTGCATGCTGGAAATATA
*
46963739 CGGCACT
1 TGGCACT
46963746 GGGTGTGCGA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCATGCTGGAAATATA
Found at i:46963770 original size:58 final size:58
Alignment explanation
Indices: 46963648--46963782 Score: 166
Period size: 58 Copynumber: 2.3 Consensus size: 58
46963638 TACGGTGACG
* * *
46963648 AGAT-TGGCACTAAGTGTGCATGCTGGAAATATATGGCACTAAGTGTGCATGCTGGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
* **
46963705 ATATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTGGGTGTGCGA-GCTCGAA
1 AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGC-ATGCTCGAA
* * *
46963763 GGGTATGGCACTATGTGTGC
1 AGATATGGCACTAAGTGTGC
46963783 GGGCTTAAAT
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
57 3 0.05
58 62 0.94
59 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.25
Consensus pattern (58 bp):
AGATATGGCACTAAGTGTGCATGCTGGAAAAATACGGCACTAAGTGTGCATGCTCGAA
Found at i:46972527 original size:41 final size:39
Alignment explanation
Indices: 46972419--46972568 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 39
46972409 GTTCACGATT
*
46972419 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
*
46972459 GCACGAATGCCTTCGGGTCTTAGCCCGGATAGTA-GCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATAGAATG--ACTA
* * ** *
46972500 GCACAATTGCCTTCGGGTCTTAACCCGG-TATAATTTCCA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
* *
46972539 GCATAATTGTCTTCGGG-CTTAGCCCGGATA
1 GCACAA-TGCCTTCGGGTCTTAGCCCGGATA
46972569 TCATTCAATT
Statistics
Matches: 93, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
38 9 0.10
39 20 0.22
40 37 0.40
41 27 0.29
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (39 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATAGAATGACTA
Found at i:46975287 original size:59 final size:56
Alignment explanation
Indices: 46975214--46975343 Score: 145
Period size: 59 Copynumber: 2.3 Consensus size: 56
46975204 ATTTAAGCCC
* * * *
46975214 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCC--A-TATTTCCAGCAT
* * **
46975273 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATTTCCAGCAT
46975329 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
46975344 ATCTCGTCAC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
56 26 0.42
57 1 0.02
59 34 0.55
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (56 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATTTCCAGCAT
Found at i:46975303 original size:29 final size:28
Alignment explanation
Indices: 46975263--46975345 Score: 150
Period size: 27 Copynumber: 3.0 Consensus size: 28
46975253 TGCCGTATTT
46975263 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCA-ATA
46975292 TTTCCAGCATGCACACTTAGTGCC-ATA
1 TTTCCAGCATGCACACTTAGTGCCAATA
46975319 TTTCCAGCATGCACACTTAGTGCCAAT
1 TTTCCAGCATGCACACTTAGTGCCAAT
46975346 CTCGTCACCG
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
27 27 0.51
28 2 0.04
29 24 0.45
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (28 bp):
TTTCCAGCATGCACACTTAGTGCCAATA
Found at i:46976546 original size:20 final size:19
Alignment explanation
Indices: 46976504--46976559 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 19
46976494 GAATGAACAC
*
46976504 TTTTTTT-TTCTTTTC-TT
1 TTTTTTTCTTCATTTCTTT
*
46976521 TGTTTTTCTTCATATTCTTT
1 TTTTTTTCTTCAT-TTCTTT
*
46976541 TTTTTTTTTTCATTTCTTT
1 TTTTTTTCTTCATTTCTTT
46976560 ATTCTTCCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 6 0.19
18 4 0.12
19 9 0.28
20 13 0.41
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTTTTCTTCATTTCTTT
Found at i:46983178 original size:59 final size:58
Alignment explanation
Indices: 46983105--46983236 Score: 158
Period size: 59 Copynumber: 2.3 Consensus size: 58
46983095 ATTTAAGCCC
* * * * *
46983105 GCACACATAGTGCCATACCCTTCGAGC-TCGCACACCCAGTGCCGTATTTTTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCAT-GCACACCCAGTGCCATA-TATTTCCAGCAT
* * **
46983164 GCACACTTAGTGCCATATATTTCCAGCATGCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
46983222 GCACACTTAGTGCCA
1 GCACACTTAGTGCCA
46983237 ATCTCGTCAC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
58 26 0.41
59 36 0.57
60 1 0.02
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (58 bp):
GCACACTTAGTGCCATACACTTCCAGCATGCACACCCAGTGCCATATATTTCCAGCAT
Found at i:46983194 original size:29 final size:29
Alignment explanation
Indices: 46983154--46983236 Score: 166
Period size: 29 Copynumber: 2.9 Consensus size: 29
46983144 TGCCGTATTT
46983154 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
46983183 TTTCCAGCATGCACACTTAGTGCCATATA
1 TTTCCAGCATGCACACTTAGTGCCATATA
46983212 TTTCCAGCATGCACACTTAGTGCCA
1 TTTCCAGCATGCACACTTAGTGCCA
46983237 ATCTCGTCAC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 54 1.00
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (29 bp):
TTTCCAGCATGCACACTTAGTGCCATATA
Found at i:46984437 original size:20 final size:19
Alignment explanation
Indices: 46984395--46984450 Score: 62
Period size: 20 Copynumber: 3.0 Consensus size: 19
46984385 GAATGAACAC
*
46984395 TTTTTTT-TTCTTTTC-TT
1 TTTTTTTCTTCATTTCTTT
*
46984412 TGTTTTTCTTCATATTCTTT
1 TTTTTTTCTTCAT-TTCTTT
*
46984432 TTTTTTTTTTCATTTCTTT
1 TTTTTTTCTTCATTTCTTT
46984451 ATTCTTCCTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
17 6 0.19
18 4 0.12
19 9 0.28
20 13 0.41
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTTTTCTTCATTTCTTT
Found at i:46992755 original size:14 final size:15
Alignment explanation
Indices: 46992729--46992762 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
46992719 TAAGTAATGT
46992729 TTAATTATATTAATA
1 TTAATTATATTAATA
*
46992744 TTAATT-TATTAATG
1 TTAATTATATTAATA
46992758 TTAAT
1 TTAAT
46992763 ACAAATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (15 bp):
TTAATTATATTAATA
Found at i:46998277 original size:40 final size:40
Alignment explanation
Indices: 46998183--46998407 Score: 231
Period size: 40 Copynumber: 5.6 Consensus size: 40
46998173 TATTCGAATG
*
46998183 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * * * *
46998224 ATAACCAGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* * *
46998264 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * * *
46998304 ATATCCAGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* *
46998344 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * *
46998384 ACATCTGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
46998408 CTTGTGCAAG
Statistics
Matches: 153, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
39 1 0.01
40 123 0.80
41 28 0.18
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:46998395 original size:80 final size:80
Alignment explanation
Indices: 46998183--46998443 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
46998173 TATTCGAATG
* * * *
46998183 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCAGGCTAAGACCCGAAGGC
*
46998248 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTCGCT
* * * *
46998264 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCAGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGACCCGAAGGCA
* *
46998329 TTTGTGCTAG-CGACT
66 TTCGTGCGAGTCG-CT
* * * ** *
46998344 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCTGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGACCCGAAGGCA
* * *
46998409 TT-GTGCAAGTAGTT
66 TTCGTGCGAGTCGCT
*
46998423 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
46998444 ATTACTTGAG
Statistics
Matches: 153, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 93 0.61
81 32 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCAGGCTAAGACCCGAAGGCA
TTCGTGCGAGTCGCT
Found at i:46998397 original size:120 final size:119
Alignment explanation
Indices: 46998183--46998443 Score: 296
Period size: 120 Copynumber: 2.2 Consensus size: 119
46998173 TATTCGAATG
* * *
46998183 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCAGACTAAGATCCGAAGGC
1 ATATCC-GGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGC
* * * * *
46998248 ATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGA-TT
65 ATTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAG-GAGTT
* * * *
46998304 ATATCCAGGCTAAAACCCGAAGGCATTTGTGCTA-GCGACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCC-GGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGAT-CCGAAGG
* * * *
46998367 CATTTATGCTAG-TGACCACATCTGGGCTAAGACCCGAAGGCCTTGTGCAAGTAGTT
64 CATTCATGCGAGTTG-CCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
46998423 ATATCCGGCTAAATCCCGAAG
1 ATATCCGGCTAAATCCCGAAG
46998444 ATTACTTGAG
Statistics
Matches: 119, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
118 15 0.13
119 19 0.16
120 55 0.46
121 30 0.25
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (119 bp):
ATATCCGGCTAAATCCCGAAGGCATTTGTGCTAGGCGACTATAACCAGACTAAGATCCGAAGGCA
TTCATGCGAGTTGCCACATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGGAGTT
Found at i:47007898 original size:36 final size:36
Alignment explanation
Indices: 47007851--47007919 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
47007841 AGTAAACTCT
*
47007851 ATTTAGTTCAGCAACCTTTTG-GATCTATTCTGATTG
1 ATTTAGTTCAGCAACCTTTCGAG-TCTATTCTGATTG
*
47007887 ATTTAGTTCAGCAGCCTTTCGAGTCTATTCTGA
1 ATTTAGTTCAGCAACCTTTCGAGTCTATTCTGA
47007920 CTAGCATGCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
36 29 0.97
37 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.17, T:0.42
Consensus pattern (36 bp):
ATTTAGTTCAGCAACCTTTCGAGTCTATTCTGATTG
Found at i:47015091 original size:54 final size:55
Alignment explanation
Indices: 47015009--47015132 Score: 151
Period size: 55 Copynumber: 2.3 Consensus size: 55
47014999 GTGGGCAATC
* * * * *
47015009 CTGCCAAAACAACACGGGCGTGCGACACGCC-GTGTCTATAAGCCATGGTTGAAA
1 CTGCCAAAATAACACGGACGTGCGACACGCCTCTGTCTAGAAGCCATGGTCGAAA
** *
47015063 CTGCCAAAATAACACGGACGTTTGACACGCCTCTGTCTAGAAGCCATGGTCGATA
1 CTGCCAAAATAACACGGACGTGCGACACGCCTCTGTCTAGAAGCCATGGTCGAAA
* *
47015118 CTGTCAAACTAACAC
1 CTGCCAAAATAACAC
47015133 AGGTGTGCGC
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
54 27 0.46
55 32 0.54
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (55 bp):
CTGCCAAAATAACACGGACGTGCGACACGCCTCTGTCTAGAAGCCATGGTCGAAA
Found at i:47018799 original size:40 final size:40
Alignment explanation
Indices: 47018709--47018928 Score: 207
Period size: 40 Copynumber: 5.5 Consensus size: 40
47018699 ACCCAAGTAT
* * ** * *
47018709 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
47018747 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
47018787 CTTCGAGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
47018827 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGAGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
47018867 CTTCG-GATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGAGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
*
47018907 CTT-TAGGACTTAGCCCGGATAT
1 CTTCGA-GACTTAGCCCGGATAT
47018929 CATTCGAATA
Statistics
Matches: 149, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
38 11 0.07
39 17 0.11
40 118 0.79
41 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGAGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:47018840 original size:80 final size:78
Alignment explanation
Indices: 47018709--47018928 Score: 246
Period size: 80 Copynumber: 2.8 Consensus size: 78
47018699 ACCCAAGTAT
* * * * *
47018709 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGGTC
1 CTTC-GGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAG-C
*
47018773 -ACTAGCATAAATGC
64 AACTAGCACAAATGC
* *
47018787 CTTCGAGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
1 CTTCG-GACTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGC
*
47018852 AACTCGCACAAATGC
64 AACTAGCACAAATGC
* * ** *
47018867 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGCCTTTAGGACTTAGCCCGGATAT
1 CTTCGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATAT
47018929 CATTCGAATA
Statistics
Matches: 121, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
77 1 0.01
78 10 0.08
79 20 0.17
80 90 0.74
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (78 bp):
CTTCGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATAGCAA
CTAGCACAAATGC
Found at i:47026908 original size:40 final size:40
Alignment explanation
Indices: 47026825--47027043 Score: 250
Period size: 40 Copynumber: 5.5 Consensus size: 40
47026815 ACCCAAGTAT
** * *
47026825 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
47026863 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
47026903 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
47026943 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * *
47026983 CTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
47027023 CTTCGGGACTTAGCCC-GATAT
1 CTTCGGGTCTTAGCCCGGATAT
47027044 CATTCGAATA
Statistics
Matches: 153, Mismatches: 23, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 21 0.14
40 119 0.78
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:47032122 original size:32 final size:32
Alignment explanation
Indices: 47032081--47032146 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
47032071 CCAAGTTTAA
47032081 TACATATGACAATTTCCATACACCAAATCATT
1 TACATATGACAATTTCCATACACCAAATCATT
* *
47032113 TACATATGACAGTTTCCATATACCAAATCATT
1 TACATATGACAATTTCCATACACCAAATCATT
47032145 TA
1 TA
47032147 AACCATTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.33
Consensus pattern (32 bp):
TACATATGACAATTTCCATACACCAAATCATT
Found at i:47034275 original size:19 final size:19
Alignment explanation
Indices: 47034250--47034340 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
47034240 AATCATATCT
47034250 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
47034269 ACTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
47034287 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
47034304 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
47034323 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
47034341 TGAAGATTAT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:47034309 original size:35 final size:37
Alignment explanation
Indices: 47034243--47034340 Score: 141
Period size: 35 Copynumber: 2.7 Consensus size: 37
47034233 ATTACAAAAT
47034243 CATATC-T-TCTAAGATTGCATATCATAACTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATAACTAAGATTG
*
47034279 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATAACTAAGATTG
47034314 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
47034341 TGAAGATTAT
Statistics
Matches: 56, Mismatches: 1, Indels: 8
0.86 0.02 0.12
Matches are distributed among these distances:
35 21 0.38
36 19 0.34
37 10 0.18
38 6 0.11
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATAACTAAGATTG
Found at i:47034755 original size:45 final size:45
Alignment explanation
Indices: 47034691--47035009 Score: 322
Period size: 45 Copynumber: 7.1 Consensus size: 45
47034681 AGAAGGCGAT
* * * *
47034691 ATCTGCTATCTTTGATCTGCTCCCTGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
47034736 ATCTGTTATCTTCGATCTGCTCCCCATCTAATACATAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * *
47034781 ATCTGCT-TCTTCAATATGCTCCCCATCTAATACAAAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
47034825 ATCTATTATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
47034870 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * * * * * *
47034915 ATCTGTCATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAG
1 ATCTGTTATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAA
*
47034960 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTG-T-TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
47035007 ATC
1 ATC
47035010 ATCTTGGATC
Statistics
Matches: 228, Mismatches: 37, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
43 6 0.03
44 43 0.19
45 148 0.65
46 1 0.00
47 19 0.08
48 5 0.02
49 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:47034859 original size:89 final size:90
Alignment explanation
Indices: 47034708--47034918 Score: 280
Period size: 89 Copynumber: 2.4 Consensus size: 90
47034698 ATCTTTGATC
* * * * * *
47034708 TGCTCCCTGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCCCCATCTAATACATA
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCTATTATCTCCAATCTGCTCCCCATCTAATACAGA
*
47034773 GACGCCAAATCTGCT-TCTTCAATA
66 GACGCCAAATCTGCTATCTCCAATA
* * * *
47034797 TGCTCCCCATCTAATACAAAGATGCCAAATCTATTATCTCCAATTTGCTCCCCGTCTAATACAGA
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCTATTATCTCCAATCTGCTCCCCATCTAATACAGA
* * * *
47034862 GATGCCAAATCTGTTATCTCCGATT
66 GACGCCAAATCTGCTATCTCCAATA
47034887 TGCTCCCCGTCTAATACAGAGATGCCAAATCT
1 TGCTCCCCGTCTAATACAGAGATGCCAAATCT
47034919 GTCATCTTGG
Statistics
Matches: 104, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
89 68 0.65
90 36 0.35
ACGTcount: A:0.28, C:0.30, G:0.12, T:0.30
Consensus pattern (90 bp):
TGCTCCCCGTCTAATACAGAGATGCCAAATCTATTATCTCCAATCTGCTCCCCATCTAATACAGA
GACGCCAAATCTGCTATCTCCAATA
Found at i:47035078 original size:78 final size:78
Alignment explanation
Indices: 47034949--47035243 Score: 468
Period size: 78 Copynumber: 3.8 Consensus size: 78
47034939 ATGTAAACAC
47034949 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
47035014 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
47035027 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
47035091 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* *
47035105 ATGAAGGTCAGATCTACTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
47035170 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* * * ** *
47035183 ATGAAGGTCAGATATGCTATGTCTTTGATCTGC-CCTCCGTCGAATATGGAGATACCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCC-CCGTCTAATACAGAGATGCCAAATC
47035244 TGTTTCTTTG
Statistics
Matches: 200, Mismatches: 14, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
77 4 0.02
78 194 0.97
79 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:47035967 original size:33 final size:33
Alignment explanation
Indices: 47035925--47035991 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
47035915 AGACTAAAGA
47035925 AAGAATTTCCTTGAGTTCTTTCAAACCTCACTT
1 AAGAATTTCCTTGAGTTCTTTCAAACCTCACTT
47035958 AAGAATTTCCTTGAGTTCTTTCAAACCTCACTT
1 AAGAATTTCCTTGAGTTCTTTCAAACCTCACTT
47035991 A
1 A
47035992 CGTGAATTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.39
Consensus pattern (33 bp):
AAGAATTTCCTTGAGTTCTTTCAAACCTCACTT
Found at i:47037274 original size:40 final size:40
Alignment explanation
Indices: 47037223--47037619 Score: 535
Period size: 40 Copynumber: 9.8 Consensus size: 40
47037213 TATATAGCTA
47037223 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
* * * *
47037263 GGCTAAATCCCGAAGAGCATTTGTGCTAGTGATATATAGCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T-TATATCCG
*
47037305 GGCTAAG-CCCTGAAGAGCATTCATGCTGGTGTTATATCCG
1 GGCTAAGTCCC-GAAGAGCATTCGTGCTGGTGTTATATCCG
* * * *
47037345 GGCTAAGTACCAAAGAGCATTCGTGCTAGTGATATATAGCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T-TATATCCG
47037387 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
* *
47037427 GGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATAGCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTG-T-TATATCCG
* *
47037469 GGCTAAGTCCCGAAGAGCATTCGTGTTGGTGTTATATCCA
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
* * * * *
47037509 GGTTAAGTCCCGAAGAGCATTTGTGCTAGTGATATATTCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
47037549 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
* * *
47037589 GGCTAGGTCCCGAAGAGCAATCATGCTGGTG
1 GGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
47037620 ATGTGTATTC
Statistics
Matches: 310, Mismatches: 39, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
40 198 0.64
41 11 0.04
42 101 0.33
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCG
Found at i:47037320 original size:82 final size:82
Alignment explanation
Indices: 47037213--47037621 Score: 644
Period size: 82 Copynumber: 5.0 Consensus size: 82
47037203 AATTGAGAGT
** *
47037213 TATATAGCTAGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAATCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
*
47037278 AGCATTTGTGCTAGTGA
66 AGCATTCGTGCTAGTGA
* * *
47037295 TATATAGCCGGGCTAAG-CCCTGAAGAGCATTCATGCTGGTGTTATATCCGGGCTAAGTACCAAA
1 TATATAGCCGGGCTAAGTCCC-GAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAA
47037359 GAGCATTCGTGCTAGTGA
65 GAGCATTCGTGCTAGTGA
47037377 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
47037442 AGCATTCGTGCTAGTGA
66 AGCATTCGTGCTAGTGA
* * *
47037459 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGTTGGTGTTATATCCAGGTTAAGTCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
*
47037524 AGCATTTGTGCTAGTGA
66 AGCATTCGTGCTAGTGA
* *
47037541 TATAT--TCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
* * *
47037604 AGCAATCATGCTGGTGA
66 AGCATTCGTGCTAGTGA
47037621 T
1 T
47037622 GTGTATTCGG
Statistics
Matches: 302, Mismatches: 23, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
80 67 0.22
81 3 0.01
82 229 0.76
83 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (82 bp):
TATATAGCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAAG
AGCATTCGTGCTAGTGA
Found at i:47041298 original size:48 final size:48
Alignment explanation
Indices: 47041223--47041703 Score: 836
Period size: 48 Copynumber: 10.0 Consensus size: 48
47041213 CAAGATAAAT
47041223 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
47041271 ATAGGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
47041319 ACATGTATATGTGGTAAAGCCGAATGGCTAATGCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
47041367 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
47041415 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
47041463 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
47041511 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
47041559 ATATGTATATGTGATAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
47041607 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** * * *
47041655 ATACATATATGTGGTAAAGCCGAAGGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
47041703 A
1 A
47041704 CGTGTGTATA
Statistics
Matches: 414, Mismatches: 19, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 414 1.00
ACGTcount: A:0.36, C:0.07, G:0.28, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:47041953 original size:37 final size:37
Alignment explanation
Indices: 47041845--47041953 Score: 157
Period size: 37 Copynumber: 2.9 Consensus size: 37
47041835 GGAAATATAT
*
47041845 TCCGGGTAAGACCCGATGA-TTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTT-CGTGTGGAGATTTTG
*
47041882 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
* * *
47041919 TCCGTGTAAGACCAGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTT
47041954 CATCTGAGCT
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 64 0.98
38 1 0.02
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTTCGTGTGGAGATTTTG
Found at i:47050196 original size:17 final size:18
Alignment explanation
Indices: 47050174--47050208 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
47050164 GATATGATAC
*
47050174 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
47050191 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
47050209 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:47050504 original size:23 final size:22
Alignment explanation
Indices: 47050476--47050519 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
47050466 AATTAAATCA
47050476 CTAAGATTACAAAATCATATCTT
1 CTAAGATTAC-AAATCATATCTT
* *
47050499 CTAAGATTGCATATCATATCT
1 CTAAGATTACAAATCATATCT
47050520 AAGATTGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (22 bp):
CTAAGATTACAAATCATATCTT
Found at i:47050554 original size:35 final size:36
Alignment explanation
Indices: 47050498--47050623 Score: 175
Period size: 35 Copynumber: 3.5 Consensus size: 36
47050488 AATCATATCT
47050498 TCTAAGATTGCATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGC-TATCATATCTAAGATTGCAATCATA
*
47050535 TCTAAGATTG-TATCATATCTAAGATTGCATATTATA
1 TCTAAGATTGCTATCATATCTAAGATTGCA-ATCATA
* *
47050571 TCTAAGATTGCAATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
*
47050606 TATAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
47050624 TGAAGATTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
35 34 0.43
36 20 0.25
37 26 0.32
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (36 bp):
TCTAAGATTGCTATCATATCTAAGATTGCAATCATA
Found at i:47050572 original size:54 final size:54
Alignment explanation
Indices: 47050498--47050623 Score: 234
Period size: 54 Copynumber: 2.3 Consensus size: 54
47050488 AATCATATCT
47050498 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
47050552 TCTAAGATTGCATATTATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
*
47050606 TATAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
47050624 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
Found at i:47050631 original size:17 final size:19
Alignment explanation
Indices: 47050498--47050623 Score: 192
Period size: 19 Copynumber: 6.9 Consensus size: 19
47050488 AATCATATCT
47050498 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
47050517 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
47050535 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
47050552 TCTAAGATTGCATATTATA
1 TCTAAGATTGCATATCATA
47050571 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
47050589 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
47050606 TATAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
47050624 TGAAGATTAT
Statistics
Matches: 98, Mismatches: 3, Indels: 12
0.87 0.03 0.11
Matches are distributed among these distances:
17 31 0.32
18 31 0.32
19 36 0.37
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:47050777 original size:18 final size:18
Alignment explanation
Indices: 47050744--47050778 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47050734 GGACTTCGTT
**
47050744 TTTTTTTTGGGTTTATTA
1 TTTTTTTTGGACTTATTA
47050762 TTTTTTTTGGACTTATT
1 TTTTTTTTGGACTTATT
47050779 TCTGGGCCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.03, G:0.14, T:0.71
Consensus pattern (18 bp):
TTTTTTTTGGACTTATTA
Found at i:47056011 original size:26 final size:26
Alignment explanation
Indices: 47055982--47056039 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
47055972 CATGATCTAC
*
47055982 CACATAAGATAGTCCTGGCAGACTTT
1 CACATAAGATAGTCCTGACAGACTTT
* **
47056008 CACATAAGATAGTCTTGATGGACTTT
1 CACATAAGATAGTCCTGACAGACTTT
47056034 CACATA
1 CACATA
47056040 CAATAGTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (26 bp):
CACATAAGATAGTCCTGACAGACTTT
Found at i:47059429 original size:40 final size:40
Alignment explanation
Indices: 47059326--47059526 Score: 293
Period size: 40 Copynumber: 5.0 Consensus size: 40
47059316 GATGATAACT
* *
47059326 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
*
47059366 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTAATATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
47059405 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-C
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCC
* *
47059445 GGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
47059485 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
47059525 GG
1 GG
47059527 ATAAATTCCG
Statistics
Matches: 147, Mismatches: 9, Indels: 10
0.89 0.05 0.06
Matches are distributed among these distances:
39 37 0.25
40 108 0.73
41 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:47061253 original size:19 final size:17
Alignment explanation
Indices: 47061203--47061257 Score: 56
Period size: 19 Copynumber: 3.0 Consensus size: 17
47061193 ATATTTTTAG
*
47061203 AAAAATTAATTTTATGGTT
1 AAAAA-TAATTTT-TGGGT
*
47061222 TAAAATAATTTTTGGGT
1 AAAAATAATTTTTGGGT
47061239 AAAAATAAATATTTTGGGT
1 AAAAAT-AAT-TTTTGGGT
47061258 TAAATTGGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 9 0.29
18 10 0.32
19 12 0.39
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.44
Consensus pattern (17 bp):
AAAAATAATTTTTGGGT
Found at i:47063392 original size:29 final size:29
Alignment explanation
Indices: 47063360--47063432 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
47063350 CTTCGAGCTC
* *
47063360 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
47063389 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
47063418 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
47063433 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:47064659 original size:27 final size:30
Alignment explanation
Indices: 47064601--47064661 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 30
47064591 TTTTTTTTTC
47064601 CTTTTCTTTGTTTTTCTTCATATTCTCTTT
1 CTTTTCTTTGTTTTTCTTCATATTCTCTTT
*
47064631 CTTTT-TTT-TTTTT-TTCAT-TTCTTTATT
1 CTTTTCTTTGTTTTTCTTCATATTCTCT-TT
47064658 CTTT
1 CTTT
47064662 CTACATAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 5 0.17
27 11 0.38
28 5 0.17
29 3 0.10
30 5 0.17
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.75
Consensus pattern (30 bp):
CTTTTCTTTGTTTTTCTTCATATTCTCTTT
Found at i:47071292 original size:29 final size:29
Alignment explanation
Indices: 47071260--47071332 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
47071250 CTTCGAGCTC
* *
47071260 GCACACCCAGTGCCGTATTTTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
47071289 GCACACTTAGTGCCATATATTTCCAGCAT
1 GCACACCCAGTGCCATATATTTCCAGCAT
**
47071318 GCACACTTAGTGCCA
1 GCACACCCAGTGCCA
47071333 ATCTCGTCAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (29 bp):
GCACACCCAGTGCCATATATTTCCAGCAT
Found at i:47075530 original size:28 final size:27
Alignment explanation
Indices: 47075467--47075536 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
47075457 ATAGTGAGTC
47075467 CGCACACTTAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
*
47075494 CGCACACTTAGTGCTATATGATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
47075522 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47075537 GTACAAGTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:47079222 original size:20 final size:20
Alignment explanation
Indices: 47079193--47079243 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
47079183 CCGTTTGGTA
* *
47079193 TCATGACACTGTCAAAATTT
1 TCATGCCACTGTCAAAATAT
*
47079213 TCATGCCACTGTGAAAATAT
1 TCATGCCACTGTCAAAATAT
47079233 TCATGCCACTG
1 TCATGCCACTG
47079244 CTTTGGTGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (20 bp):
TCATGCCACTGTCAAAATAT
Found at i:47080369 original size:30 final size:30
Alignment explanation
Indices: 47080325--47080381 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
47080315 TTTACGAGCC
47080325 TAGGGGAAACAATATAATTTTGACAAAGTT
1 TAGGGGAAACAATATAATTTTGACAAAGTT
*
47080355 TAGGGGCAAA-AATATAATTTTGCCAAA
1 TAGGGG-AAACAATATAATTTTGACAAA
47080382 ATATGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (30 bp):
TAGGGGAAACAATATAATTTTGACAAAGTT
Found at i:47085747 original size:20 final size:19
Alignment explanation
Indices: 47085717--47085800 Score: 70
Period size: 20 Copynumber: 4.4 Consensus size: 19
47085707 GATGTTAGAA
47085717 TATTAATTCTATTATATATT
1 TATT-ATTCTATTATATATT
47085737 TATCTATTCTATTATATA--
1 TAT-TATTCTATTATATATT
*
47085755 TA-TATTCTAATATATATT
1 TATTATTCTATTATATATT
47085773 AGTATTATT-T-TTATATTATT
1 --TATTATTCTATTATA-TATT
47085793 TATCTATT
1 TAT-TATT
47085801 TCTTATCTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
16 13 0.24
18 5 0.09
19 8 0.15
20 23 0.43
21 5 0.09
ACGTcount: A:0.33, C:0.06, G:0.01, T:0.60
Consensus pattern (19 bp):
TATTATTCTATTATATATT
Found at i:47085762 original size:16 final size:17
Alignment explanation
Indices: 47085722--47085771 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 17
47085712 TAGAATATTA
47085722 ATTCTATTATATATTTATCT
1 ATTCTATTATATA--TA-CT
47085742 ATTCTATTATATATA-T
1 ATTCTATTATATATACT
*
47085758 ATTCTAATATATAT
1 ATTCTATTATATAT
47085772 TAGTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 14 0.48
18 2 0.07
20 13 0.45
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTCTATTATATATACT
Found at i:47094081 original size:42 final size:42
Alignment explanation
Indices: 47094020--47094144 Score: 144
Period size: 42 Copynumber: 3.0 Consensus size: 42
47094010 GAAAAGCTCG
** ***
47094020 TACAATGTAAACGTCCCAGACATGGTCTTACATGTAATCAAA
1 TACAATGCCAACGTCCCAGACATGGTCTTACACAAAATCAAA
* * *
47094062 TTCAATGCC-ACTGTCCCAGACAGGGTCTTACACAAAATCAAG
1 TACAATGCCAAC-GTCCCAGACATGGTCTTACACAAAATCAAA
*
47094104 TACAATGCCAACGTCCCAGACATAGTCTTACACATAAATCA
1 TACAATGCCAACGTCCCAGACATGGTCTTACACA-AAATCA
47094145 TAAGTCGATG
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 2 0.03
42 59 0.86
43 8 0.12
ACGTcount: A:0.37, C:0.26, G:0.14, T:0.23
Consensus pattern (42 bp):
TACAATGCCAACGTCCCAGACATGGTCTTACACAAAATCAAA
Found at i:47096481 original size:30 final size:30
Alignment explanation
Indices: 47096445--47096502 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
47096435 TATGAGCCTT
*
47096445 GGGCAAAAGTGTAAATATGCAAAAGTTTAG
1 GGGCAAAAATGTAAATATGCAAAAGTTTAG
* * *
47096475 GGGCAAAAATGTAATTTTGCTAAAGTTT
1 GGGCAAAAATGTAAATATGCAAAAGTTT
47096503 GGGTCAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (30 bp):
GGGCAAAAATGTAAATATGCAAAAGTTTAG
Found at i:47103873 original size:30 final size:30
Alignment explanation
Indices: 47103837--47103895 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
47103827 TACGAGCCTT
*
47103837 GGGGCAAAAGTGTAAATATGCAAAAGTTTA
1 GGGGCAAAAATGTAAATATGCAAAAGTTTA
* * *
47103867 GGGGCAAAAATGTAATTTTGCCAAAGTTT
1 GGGGCAAAAATGTAAATATGCAAAAGTTT
47103896 GGGTCAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.25, T:0.27
Consensus pattern (30 bp):
GGGGCAAAAATGTAAATATGCAAAAGTTTA
Done.