Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 160 of 335
Found at i:47107833 original size:32 final size:33
Alignment explanation
Indices: 47107787--47107850 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
47107777 AACAGCGGGT
47107787 ACTGGGCCGAAGCCC-TTTTCAGA-ATACAGTAA
1 ACTGGGCCGAAGCCCATTTTCAGATA-ACAGTAA
**
47107819 ACTGGGCCTTAGCCCATTTTCAGATAACAGTA
1 ACTGGGCCGAAGCCCATTTTCAGATAACAGTA
47107851 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 13 0.46
33 14 0.50
34 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (33 bp):
ACTGGGCCGAAGCCCATTTTCAGATAACAGTAA
Found at i:47107849 original size:33 final size:32
Alignment explanation
Indices: 47107787--47107850 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
47107777 AACAGCGGGT
47107787 ACTGGGCCGAAGCCCTTTTCAGAATACAGTAA
1 ACTGGGCCGAAGCCCTTTTCAGAATACAGTAA
**
47107819 ACTGGGCCTTAGCCCATTTTCAG-ATAACAGTA
1 ACTGGGCCGAAGCCC-TTTTCAGAAT-ACAGTA
47107851 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (32 bp):
ACTGGGCCGAAGCCCTTTTCAGAATACAGTAA
Found at i:47108222 original size:27 final size:26
Alignment explanation
Indices: 47108166--47108222 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
47108156 CAACCTTAAC
* *
47108166 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
47108192 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
47108219 CCTA
1 CCTA
47108223 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:47109488 original size:15 final size:16
Alignment explanation
Indices: 47109470--47109501 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
47109460 GTAGATGATG
47109470 AGAAAAG-AAAAGAAA
1 AGAAAAGAAAAAGAAA
47109485 AGAAAAGAAAAAGAAA
1 AGAAAAGAAAAAGAAA
47109501 A
1 A
47109502 AACTGAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (16 bp):
AGAAAAGAAAAAGAAA
Found at i:47109502 original size:6 final size:5
Alignment explanation
Indices: 47109470--47109501 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
47109460 GTAGATGATG
47109470 AGAAA AGAAA AGAAA AGAAA AGAAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AG-AAA AGAAA A
47109502 AACTGAATCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:47110577 original size:19 final size:18
Alignment explanation
Indices: 47110540--47110583 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
47110530 ATACATACAG
47110540 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
47110557 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
47110576 TACTAATT
1 TAATAATT
47110584 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:47112920 original size:20 final size:21
Alignment explanation
Indices: 47112877--47112922 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
47112867 ACTGTTTTGT
47112877 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
47112897 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
47112916 TATGGGC
1 TATGGGC
47112923 AAGGCCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:47120755 original size:24 final size:25
Alignment explanation
Indices: 47120711--47120758 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
47120701 ACACAAACGC
47120711 AGCTCTTCATGAGCATTCTGATATA
1 AGCTCTTCATGAGCATTCTGATATA
47120736 AGCTCTT-ATGAGC-TTCCTGATAT
1 AGCTCTTCATGAGCATT-CTGATAT
47120759 GGCTCGCTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 2 0.09
24 13 0.59
25 7 0.32
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (25 bp):
AGCTCTTCATGAGCATTCTGATATA
Found at i:47123255 original size:21 final size:21
Alignment explanation
Indices: 47123231--47123300 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
47123221 AAATCTGAAC
47123231 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* * **
47123252 TCA-TGATATATGTGACGTCCGAAC
1 TCATTGA-GT-TGTG--GTCTGAGT
47123276 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
47123297 TCAT
1 TCAT
47123301 GATATATATG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.36
22 4 0.11
23 4 0.11
24 9 0.25
25 3 0.08
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:47123291 original size:45 final size:45
Alignment explanation
Indices: 47123227--47123312 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
47123217 TATGAAATCT
*
47123227 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACGTCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACGTCC
47123272 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGAC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGAC
47123313 ACATGTTTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATATGACGTCC
Found at i:47126215 original size:27 final size:27
Alignment explanation
Indices: 47126185--47126269 Score: 118
Period size: 27 Copynumber: 3.1 Consensus size: 27
47126175 AGCATGGCTG
* *
47126185 CCAGAACAGATAATCGTGGCAGAGGCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
47126212 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
47126239 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
47126266 CCAG
1 CCAG
47126270 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
26 3 0.06
27 46 0.88
28 3 0.06
ACGTcount: A:0.36, C:0.24, G:0.26, T:0.14
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:47130831 original size:27 final size:27
Alignment explanation
Indices: 47130793--47130845 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
47130783 AAACGATCAA
47130793 CTACAACCCAAATTGCATCTTTCTTTT
1 CTACAACCCAAATTGCATCTTTCTTTT
47130820 CTACAACCCAAATTGCATCTTTCTTT
1 CTACAACCCAAATTGCATCTTTCTTT
47130846 CTCGGAGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.30, G:0.04, T:0.40
Consensus pattern (27 bp):
CTACAACCCAAATTGCATCTTTCTTTT
Found at i:47133867 original size:40 final size:40
Alignment explanation
Indices: 47133782--47133932 Score: 141
Period size: 40 Copynumber: 3.8 Consensus size: 40
47133772 AATTGAATGA
* * * *
47133782 TATCCGGGCTAAGCCCCGAAGACAATTATGCTG-GAAATTA-
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC-GAGACA-TAC
* * *
47133822 TATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGC-TAC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC--GAGACATAC
*
47133863 -ATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGACATTC
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGACATAC
*
47133902 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
47133933 ACGTGGTTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
38 3 0.03
39 5 0.05
40 80 0.87
41 3 0.03
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGACATAC
Found at i:47133946 original size:40 final size:40
Alignment explanation
Indices: 47133819--47133948 Score: 154
Period size: 40 Copynumber: 3.2 Consensus size: 40
47133809 ATGCTGGAAA
* * *
47133819 TTATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
* * * ***
47133859 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGACA
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
*
47133899 TTCTATCCGGGCTAAGACCCGAAGGCATTTGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGA-GTGG
47133939 TTATATCCGG
1 TTATATCCGG
47133949 TTATATTCCG
Statistics
Matches: 72, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGG
Found at i:47133947 original size:80 final size:80
Alignment explanation
Indices: 47133781--47133948 Score: 207
Period size: 80 Copynumber: 2.1 Consensus size: 80
47133771 AAATTGAATG
* *
47133781 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATATCCGGGTTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
47133846 ATTGTGCTAGTGGCT
66 ATTGTGCTAGTGGCT
* * * * *
47133861 ACATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGACATTCTATCCGGGCTAAGACCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGACAATT-ATGCTG-GAAATTATATCCGGGCTAAGACCCGAAGG
* *
47133924 CATTTGTGC-ACGTGGTT
64 CAATTGTGCTA-GTGGCT
47133941 ATATCCGG
1 ATATCCGG
47133949 TTATATTCCG
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
79 5 0.07
80 70 0.93
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGACAATTATGCTGGAAATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCTAGTGGCT
Found at i:47148671 original size:13 final size:13
Alignment explanation
Indices: 47148649--47148681 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
47148639 AAGAGTTTGT
47148649 TTAT-TAAACTAA
1 TTATCTAAACTAA
47148661 TTATCTAAACTAA
1 TTATCTAAACTAA
*
47148674 TTAACTAA
1 TTATCTAA
47148682 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:47151591 original size:5 final size:5
Alignment explanation
Indices: 47151581--47151661 Score: 53
Period size: 5 Copynumber: 15.8 Consensus size: 5
47151571 TATGTCTTTC
* *
47151581 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AGTAAT -AAA- AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT A-AAAT AAAAT AAAAT
*
47151625 AAAAAT AAAAT AAAAT AAATAA AAAAT AAGAAT AAAA
1 -AAAAT AAAAT AAAAT AAA-AT AAAAT AA-AAT AAAA
47151662 AGATAGGAGG
Statistics
Matches: 60, Mismatches: 6, Indels: 20
0.70 0.07 0.23
Matches are distributed among these distances:
3 3 0.05
4 5 0.08
5 27 0.45
6 25 0.42
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:47151619 original size:31 final size:27
Alignment explanation
Indices: 47151582--47151661 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 27
47151572 ATGTCTTTCA
* *
47151582 AAATAAAATAATAAAATTGAAATGAAAAT
1 AAATAAAA-AATAAAAATAAAAT-AAAAT
47151611 AGTAATAAAAAAATAAAAATAAAATAAAAT
1 A--AAT-AAAAAATAAAAATAAAATAAAAT
*
47151641 AAATAAAAAATAAGAATAAAA
1 AAATAAAAAATAAAAATAAAA
47151662 AGATAGGAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
27 16 0.36
28 3 0.07
29 1 0.02
30 6 0.13
31 15 0.33
32 4 0.09
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (27 bp):
AAATAAAAAATAAAAATAAAATAAAAT
Found at i:47151624 original size:20 final size:19
Alignment explanation
Indices: 47151601--47151662 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 19
47151591 AATAAAATTG
*
47151601 AAATGAAAATAGTAATAAAA
1 AAATAAAAATAG-AATAAAA
*
47151621 AAATAAAAATAAAATAAAA
1 AAATAAAAATAGAATAAAA
47151640 TAAATAAAAAATAAGAATAAAA
1 -AAAT-AAAAAT-AGAATAAAA
47151662 A
1 A
47151663 GATAGGAGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 7 0.19
20 14 0.39
21 7 0.19
22 8 0.22
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (19 bp):
AAATAAAAATAGAATAAAA
Found at i:47151634 original size:11 final size:11
Alignment explanation
Indices: 47151620--47151662 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
47151610 TAGTAATAAA
47151620 AAAATAAAAAT
1 AAAATAAAAAT
47151631 AAAAT-AAAAT
1 AAAATAAAAAT
47151641 -AAATAAAAAAT
1 AAAAT-AAAAAT
47151652 AAGAATAAAAA
1 AA-AATAAAAA
47151663 GATAGGAGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
9 4 0.14
10 5 0.18
11 10 0.36
12 6 0.21
13 3 0.11
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:47154024 original size:40 final size:40
Alignment explanation
Indices: 47153965--47154148 Score: 223
Period size: 40 Copynumber: 4.6 Consensus size: 40
47153955 CTGATGAGAA
* * *
47153965 CCGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATA-T
* * *
47154005 CCGGGCTAAGCCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAT
*
47154045 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAT
* *
47154085 CCGGGCTAAGTCCCGAAGGCATTTGAGTGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCA-CTATAT
*
47154125 CC-GGCTATA-TCCCGAAGGTATTTG
1 CCGGGCTA-AGTCCCGAAGGCATTTG
47154149 GTTTGGGAAT
Statistics
Matches: 128, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 20 0.16
40 107 0.84
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTATAT
Found at i:47158254 original size:40 final size:40
Alignment explanation
Indices: 47158199--47158402 Score: 286
Period size: 40 Copynumber: 5.1 Consensus size: 40
47158189 CGGATGATAA
* *
47158199 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
47158239 CCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
47158279 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
47158319 CCGGGCCAAGTCCCGAAGGCATTTGTGCAAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
47158359 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
47158399 CCGG
1 CCGG
47158403 CTCTATCCCG
Statistics
Matches: 148, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
39 1 0.01
40 146 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:47168622 original size:49 final size:49
Alignment explanation
Indices: 47168490--47168739 Score: 448
Period size: 49 Copynumber: 5.1 Consensus size: 49
47168480 GTACATAATA
47168490 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
47168539 ATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGTGAAAATATAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
47168587 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
47168636 ATATATATGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
47168685 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
47168734 ATATAT
1 ATATAT
47168740 ATGTGGTAAA
Statistics
Matches: 192, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
48 47 0.24
49 145 0.76
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.31
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:47168863 original size:37 final size:36
Alignment explanation
Indices: 47168808--47168894 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
47168798 AACTTGGAAA
47168808 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
47168846 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
47168883 TATGTCCGGGTA
1 TATGTCCGGGTA
47168895 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:47170747 original size:40 final size:40
Alignment explanation
Indices: 47170692--47171040 Score: 623
Period size: 40 Copynumber: 8.8 Consensus size: 40
47170682 GAGAATTGAG
*
47170692 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
47170732 AGTGACGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
47170772 AGTGATGTATCCGGACTAAGTTCC-AAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
47170811 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
47170851 AGTGATGTATCCGGACTAAGTTCCG-AGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
*
47170890 AGTGATGTATCCGGACTAAGTTCCG-AGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
47170929 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
47170969 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
* * *
47171009 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
47171041 ATCATGCTGG
Statistics
Matches: 299, Mismatches: 8, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
39 116 0.39
40 183 0.61
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
Found at i:47170824 original size:79 final size:80
Alignment explanation
Indices: 47170692--47171040 Score: 623
Period size: 79 Copynumber: 4.4 Consensus size: 80
47170682 GAGAATTGAG
* *
47170692 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
47170757 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
47170772 AGTGATGTATCCGGACTAAGTTCC-AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
47170836 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
47170851 AGTGATGTATCCGGACTAAGTTCCG-AGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
*
47170915 -AGAGCATTCATGCT
66 AAGAGCATTCGTGCT
47170929 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
47170994 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * *
47171009 AGTGATGTATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCA
47171041 ATCATGCTGG
Statistics
Matches: 259, Mismatches: 7, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
78 38 0.15
79 156 0.60
80 65 0.25
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCT
Found at i:47170935 original size:118 final size:119
Alignment explanation
Indices: 47170692--47171053 Score: 627
Period size: 118 Copynumber: 3.0 Consensus size: 119
47170682 GAGAATTGAG
* *
47170692 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGACGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* *
47170757 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCAAGAGCATTCGTGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAGAGCATTCATGCT
47170811 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
47170876 -AGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAGAGCATTCATGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAGAGCATTCATGCT
47170929 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
* * * *
47170994 AAGAGCATTCGTGCTAGTGATGTATCCGGGCTAGGTCCCGAAGAGCAATCATGCT
66 AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG-AGAGCATTCATGCT
*
47171049 GGTGA
1 AGTGA
47171054 CGTGTATTCG
Statistics
Matches: 232, Mismatches: 9, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
118 116 0.50
119 99 0.43
120 17 0.07
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (119 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG
AAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAGAGCATTCATGCT
Found at i:47175205 original size:49 final size:49
Alignment explanation
Indices: 47175126--47175375 Score: 448
Period size: 49 Copynumber: 5.1 Consensus size: 49
47175116 GTACATAATA
47175126 ATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
47175174 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATATAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
47175223 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
*
47175272 ATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
* *
47175321 ATATATGTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
47175370 ATATAT
1 ATATAT
47175376 ATGTGGTAAA
Statistics
Matches: 193, Mismatches: 8, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
48 15 0.08
49 178 0.92
ACGTcount: A:0.35, C:0.08, G:0.26, T:0.30
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTAT
Found at i:47175499 original size:37 final size:36
Alignment explanation
Indices: 47175444--47175530 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
47175434 AACTTGGAAA
47175444 TATGTTCCGGGTGAGACCCGATGACTACGTGTGGAGAT
1 TATG-TCCGGGT-AGACCCGATGACTACGTGTGGAGAT
47175482 TATGTCCGGGTACGACCCGATGACTACGTGTGGAGAT
1 TATGTCCGGGTA-GACCCGATGACTACGTGTGGAGAT
47175519 TATGTCCGGGTA
1 TATGTCCGGGTA
47175531 AGACTTCGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 43 0.90
38 4 0.08
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.26
Consensus pattern (36 bp):
TATGTCCGGGTAGACCCGATGACTACGTGTGGAGAT
Found at i:47177557 original size:40 final size:40
Alignment explanation
Indices: 47177498--47177715 Score: 282
Period size: 40 Copynumber: 5.5 Consensus size: 40
47177488 CGGATGATAA
* *
47177498 CCGGGCTAAGTCCCGAAGGCATTTGTACTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATA-T
* * *
47177538 CCGGGCTAAGCCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
47177578 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
* *
47177618 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTCACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
*
47177658 CCGGGCTAAGTCCCGAAGGCATTTG-AGTGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTA-CTATAT
* *
47177698 CC-GGCTAAATCCCAAAGG
1 CCGGGCTAAGTCCCGAAGG
47177716 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 16 0.10
40 143 0.89
41 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
Found at i:47180179 original size:21 final size:21
Alignment explanation
Indices: 47180155--47180208 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
47180145 GTAGGGCGGT
*
47180155 GCACGGGCGTGTTGGTGGTGA
1 GCACGGGCGTGTTGGTGGCGA
47180176 GCACGGGCGTGTTGGTGGCGA
1 GCACGGGCGTGTTGGTGGCGA
*
47180197 GCATGGGCGTGT
1 GCACGGGCGTGT
47180209 GATGTGGGGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.09, C:0.17, G:0.52, T:0.22
Consensus pattern (21 bp):
GCACGGGCGTGTTGGTGGCGA
Found at i:47184065 original size:13 final size:13
Alignment explanation
Indices: 47184043--47184075 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
47184033 AAGTGTTTGT
47184043 TTAT-TAAACTAA
1 TTATCTAAACTAA
47184055 TTATCTAAACTAA
1 TTATCTAAACTAA
*
47184068 TTAACTAA
1 TTATCTAA
47184076 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:47187273 original size:54 final size:54
Alignment explanation
Indices: 47187214--47187321 Score: 198
Period size: 54 Copynumber: 2.0 Consensus size: 54
47187204 TTTCTTTATA
47187214 AAAAGAAAATATTAATGAACTTCTATGAAACTGCAACCAAATCTTTCAAGATTT
1 AAAAGAAAATATTAATGAACTTCTATGAAACTGCAACCAAATCTTTCAAGATTT
* *
47187268 AAAAGAAGATATTAATGAACTTCTATGAAACTGCAACCAAATCTTTCAGGATTT
1 AAAAGAAAATATTAATGAACTTCTATGAAACTGCAACCAAATCTTTCAAGATTT
47187322 GGTTTTGAGT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.30
Consensus pattern (54 bp):
AAAAGAAAATATTAATGAACTTCTATGAAACTGCAACCAAATCTTTCAAGATTT
Found at i:47190329 original size:26 final size:27
Alignment explanation
Indices: 47190299--47190353 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
47190289 GAGAGGGAGG
47190299 AAGCTA-A-AATAGAAAACAATGTCGAA
1 AAGCTAGAGAATAG-AAACAATGTCGAA
* *
47190325 AAGCTAGAGAATAGCAACACTGTCGAA
1 AAGCTAGAGAATAGAAACAATGTCGAA
47190352 AA
1 AA
47190354 CTCTATGCTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 6 0.24
27 14 0.56
28 5 0.20
ACGTcount: A:0.53, C:0.15, G:0.18, T:0.15
Consensus pattern (27 bp):
AAGCTAGAGAATAGAAACAATGTCGAA
Found at i:47195263 original size:50 final size:49
Alignment explanation
Indices: 47195143--47195320 Score: 194
Period size: 50 Copynumber: 3.6 Consensus size: 49
47195133 ATCTAGTATG
* * ** *
47195143 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACA
*
47195192 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCCGATACA
* * ** * * *
47195242 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CCATCCGATACA
* *
47195293 CAGAGTAGCTTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
47195321 TGCGACCTCA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 33 0.30
50 44 0.40
51 33 0.30
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCCGATACA
Found at i:47195328 original size:101 final size:99
Alignment explanation
Indices: 47195145--47195328 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 99
47195135 CTAGTATGCA
* *
47195145 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACATAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACAGAGTAGCCTGCACTTA
*
47195210 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * *
47195244 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCAGAGTAGCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACACAGAGTAGCCTGCACT
*
47195309 TAGTACTACACATGCGACCT
64 TAGTACTACACACGCGACCT
47195329 CACAATAGAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 29 0.39
100 3 0.04
101 42 0.57
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACACAGAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:47198126 original size:15 final size:16
Alignment explanation
Indices: 47198097--47198130 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
47198087 AACAGAGAAG
47198097 CCAAGAATAAAGAAAT
1 CCAAGAATAAAGAAAT
47198113 CCAA-AATAAAGAAAT
1 CCAAGAATAAAGAAAT
47198128 CCA
1 CCA
47198131 TGATACGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.62, C:0.18, G:0.09, T:0.12
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:47200977 original size:50 final size:49
Alignment explanation
Indices: 47200856--47201040 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 49
47200846 CAAAGCTATA
* * * **
47200856 TGGTACGCATAGTAGCCTGCACTTAGTACAACACATGCAACCAATTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATC
* **
47200905 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATC
* *
47200955 TGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATC
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATC
* ** *
47201006 GGGTATGCATAGTAGCCTGCACTTAGTATTACACA
1 TGGTACACATAGTAGCCTGCACTTAGTACTACACA
47201041 TGCGACCTCA
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 36 0.31
50 45 0.39
51 34 0.30
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (49 bp):
TGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATC
Found at i:47201048 original size:101 final size:99
Alignment explanation
Indices: 47200863--47201048 Score: 248
Period size: 101 Copynumber: 1.9 Consensus size: 99
47200853 ATATGGTACG
* *
47200863 CATAGTAGCCTGCACTTAGTACAACACATGCAACCAATTATCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACAACACATGCAACCAATTATCGGGTACACATAGTAGCCTGCACT
*
47200928 TAGTACTACACACGTGACCTAACCATCTGATACA
66 TAGTACTACACACGCGACCTAACCATCTGATACA
* * * **
47200962 CATAGTAGCCTGCACTTAGTACTACACACGTG-ATCGAAGTTATCGGGTATGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTAC-A-ACACATGCAACCAA-TTATCGGGTACACATAGTAGCCTGC
* *
47201026 ACTTAGTATTACACATGCGACCT
63 ACTTAGTACTACACACGCGACCT
47201049 CATAATAGAT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
99 22 0.30
100 5 0.07
101 47 0.64
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (99 bp):
CATAGTAGCCTGCACTTAGTACAACACATGCAACCAATTATCGGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTAACCATCTGATACA
Found at i:47207078 original size:40 final size:40
Alignment explanation
Indices: 47207033--47207199 Score: 176
Period size: 40 Copynumber: 4.2 Consensus size: 40
47207023 CGGAATATAA
47207033 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
47207073 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
* ** * *
47207113 CCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
47207153 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47207192 CCGGATAT
1 CCGGATAT
47207200 CATTCAATTT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
39 14 0.13
40 91 0.87
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47208048 original size:17 final size:19
Alignment explanation
Indices: 47208025--47208070 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
47208015 AAGAAGCATG
47208025 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
47208043 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
47208061 AATCATGCTC
1 AATCATGCTC
47208071 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:47215082 original size:40 final size:40
Alignment explanation
Indices: 47215037--47215203 Score: 185
Period size: 40 Copynumber: 4.2 Consensus size: 40
47215027 CGGAATATAA
47215037 CCGGATATAATCACGT-GCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCAC-TAGCACAAATGCCTTCGGGTCTTAGC
* * * *
47215077 CCGGATAGAATAACTCGCACGAATGCCTTCGGGTCTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * *
47215117 CCGGATATAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
** * * * *
47215157 CCGGATATAATTTCCAGCATAATTGTCTTCGGG-CTTAGC
1 CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
47215196 CCGGATAT
1 CCGGATAT
47215204 CATTCAATTT
Statistics
Matches: 107, Mismatches: 19, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
39 14 0.13
40 93 0.87
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGATATAATCACTAGCACAAATGCCTTCGGGTCTTAGC
Found at i:47216047 original size:17 final size:19
Alignment explanation
Indices: 47216024--47216069 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
47216014 AAGAAGCATG
47216024 AATCATGCTCAAGAATG-C
1 AATCATGCTCAAGAATGAC
*
47216042 -ATCATGGC-CAAGTATGAC
1 AATCAT-GCTCAAGAATGAC
47216060 AATCATGCTC
1 AATCATGCTC
47216070 CTTTTCAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 7
0.74 0.03 0.23
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (19 bp):
AATCATGCTCAAGAATGAC
Found at i:47220810 original size:397 final size:398
Alignment explanation
Indices: 47220024--47220820 Score: 1344
Period size: 397 Copynumber: 2.0 Consensus size: 398
47220014 CCACAGTTCG
*
47220024 AATTAGGGTCTAAATCAGGCTGTTACAACTCTCCCCCCGTAGGGATTTTCGTCCCCAAAAATCTT
1 AATTAGGGTCTAAATCAGGCTGTTACAACTCTCCCCCCGTAGGGATTTTCATCCCCAAAAATCTT
*
47220089 ACAGGTGAATAGGTTTAGATGATGTTCTTTCATTGTATCCTCTGGCTCCCATGTTGCTTCCTCAA
66 ACAGATGAATAGGTTTAGATGATGTTCTTTCATTGTATCCTCTGGCTCCCATGTTGCTTCCTCAA
*
47220154 CTCCATGCTTATGCTACAATACTTTAACTAACGGAATCTTCTTATTCCGCAACTCTTTAACCTCA
131 CTCCATGCTTATGCTACAATACTTTAACTAACGGAATCTTCTTAGTCCGCAACTCTTTAACCTCA
* * *
47220219 CGAGTCAAAATGCGAATCGGTTCTTCTTCATAGGTCATATCAGGCTGAATTTCAATTTTAGACGG
196 CGAGTCAAAATGCGAATCGGTTCTTCTTCATAGGTCATATCAGGCTGAATTTCAATCTCAGACAG
* * * *
47220284 ACTAATCACATGTGAAGGATCAAATCAATACCTTCGAAGCATTGAAATGTGGAATACATTGTGTA
261 ACTAATCACATGTGAAGGATCAAAGCAATACCTCCGAAGCATCGAAACGTGGAATACATTGTGTA
*
47220349 TCTTTTCTAACTCAGGTGGCAACAACAATCTGTAAGCAACCGGCTCGATACGTTCTATAACCTCA
326 TCTTTTCTAACTCAGGTGGCAACAACAATCTGTAAGCAACCGGCTCGATACGTTCTAAAACCTCA
47220414 TATGGTCC
391 TATGGTCC
* * ** * *
47220422 AATTAGGGTCTAAATCGGGCTGTTACAACTCTCTCCCTTTAGTGATTTTTAT-CCCAAAAATCTT
1 AATTAGGGTCTAAATCAGGCTGTTACAACTCTCCCCCCGTAGGGATTTTCATCCCCAAAAATCTT
* *
47220486 ACCGATGAATAGGTTTAGATGATGTTCTTTTATTGTATCCTCTGGCTCCCATGTTGCTTCCTCAA
66 ACAGATGAATAGGTTTAGATGATGTTCTTTCATTGTATCCTCTGGCTCCCATGTTGCTTCCTCAA
* * *
47220551 CTCCATGCTTATGCTATAATACTTTAACTAACGTAATCTTTTTAGTCCGCAACTCTTTAACCTCA
131 CTCCATGCTTATGCTACAATACTTTAACTAACGGAATCTTCTTAGTCCGCAACTCTTTAACCTCA
* *
47220616 CGAGTCAAAATGCGAATCGGTTCTTCTTCGTAGGTCATATCAGGTTGAATTTCAATCTCAGACAG
196 CGAGTCAAAATGCGAATCGGTTCTTCTTCATAGGTCATATCAGGCTGAATTTCAATCTCAGACAG
*
47220681 ACTAATCACATGTGAAGGATCAGAGCAATACCTCCGAAGCATCGAAACGTGGAATACATTGTGTA
261 ACTAATCACATGTGAAGGATCAAAGCAATACCTCCGAAGCATCGAAACGTGGAATACATTGTGTA
* *
47220746 TCTTTTCTAACTCAGGTGGCAACAATAATCTGTAAGCCACCGGCTCGATACGTTCTAAAACCTCA
326 TCTTTTCTAACTCAGGTGGCAACAACAATCTGTAAGCAACCGGCTCGATACGTTCTAAAACCTCA
47220811 TATGGTCC
391 TATGGTCC
47220819 AA
1 AA
47220821 CATACCTCGG
Statistics
Matches: 372, Mismatches: 27, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
397 327 0.88
398 45 0.12
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (398 bp):
AATTAGGGTCTAAATCAGGCTGTTACAACTCTCCCCCCGTAGGGATTTTCATCCCCAAAAATCTT
ACAGATGAATAGGTTTAGATGATGTTCTTTCATTGTATCCTCTGGCTCCCATGTTGCTTCCTCAA
CTCCATGCTTATGCTACAATACTTTAACTAACGGAATCTTCTTAGTCCGCAACTCTTTAACCTCA
CGAGTCAAAATGCGAATCGGTTCTTCTTCATAGGTCATATCAGGCTGAATTTCAATCTCAGACAG
ACTAATCACATGTGAAGGATCAAAGCAATACCTCCGAAGCATCGAAACGTGGAATACATTGTGTA
TCTTTTCTAACTCAGGTGGCAACAACAATCTGTAAGCAACCGGCTCGATACGTTCTAAAACCTCA
TATGGTCC
Found at i:47227701 original size:46 final size:47
Alignment explanation
Indices: 47227494--47227721 Score: 183
Period size: 47 Copynumber: 4.8 Consensus size: 47
47227484 ATTGACAGAA
* * * * * *
47227494 AAGACCATGGTTGGGCCATGGCAAC-ATGTGATATGTGATTTTCGTAT
1 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGTGATTCT-GTAT
* * * * *
47227541 AAGACCATAGTTGGGCTATGGCATTGGTGTGATATGAGCTTCCGTAT
1 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGTGATTCTGTAT
* * * * * *
47227588 AAGACCATATCTAGGATATGGCATCGGCGTGATTTGT-ACTTCTGTGT
1 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGTGA-TTCTGTAT
* * * *
47227635 AAGACCATATCTGGGATATGGCATCAGTGTGATATGTGA-TCTGTGT
1 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGTGATTCTGTAT
* * *
47227681 AAGACCATGGCTAGGCTATGGCTTCGGTGTATGATATGTGA
1 AAGACCATAGCTGGGCTATGGCATCGGTG--TGATATGTGA
47227722 CTATGTGCAA
Statistics
Matches: 146, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
46 30 0.21
47 93 0.64
48 23 0.16
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.32
Consensus pattern (47 bp):
AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGTGATTCTGTAT
Found at i:47230681 original size:20 final size:20
Alignment explanation
Indices: 47230656--47230702 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
47230646 GTTTTGATAT
47230656 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
47230676 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
47230696 ACATGAT
1 ACATGAT
47230703 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:47230789 original size:26 final size:25
Alignment explanation
Indices: 47230750--47230844 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
47230740 AGGAAGTGCA
*
47230750 AAAAGGGC-TATGCCCCAGTTTACAG
1 AAAAGGGCTTTTGCCCCAGTTTA-AG
* * **
47230775 AAAATGGCTTTTGCCTCAGTTTATT
1 AAAAGGGCTTTTGCCCCAGTTTAAG
**
47230800 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGCTTTTGCCCCAGTTTAAG
*
47230825 AAAAGGGC-ATTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
47230845 ATTAAAAGAG
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
24 11 0.18
25 37 0.62
26 12 0.20
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTAAG
Found at i:47231903 original size:42 final size:43
Alignment explanation
Indices: 47231838--47231919 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 43
47231828 TCTTACATGT
*
47231838 AATCAAATATCGATGCCACTGTCCCAAACAGGGTATTACACGA
1 AATCAAATATCGATGCCAATGTCCCAAACAGGGTATTACACGA
* * * *
47231881 AATCATATA-CGATGCCAATGTCCCAGACATGGTCTTACA
1 AATCAAATATCGATGCCAATGTCCCAAACAGGGTATTACA
47231920 AGTAAATCCC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
42 26 0.76
43 8 0.24
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATGTCCCAAACAGGGTATTACACGA
Found at i:47246237 original size:30 final size:30
Alignment explanation
Indices: 47246192--47246251 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
47246182 ATTTAAAACG
*
47246192 AACTTTGGCAAAATTACATTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
47246222 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
47246252 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:47248804 original size:46 final size:46
Alignment explanation
Indices: 47248661--47248804 Score: 134
Period size: 46 Copynumber: 3.1 Consensus size: 46
47248651 CCCGCCCATA
* * *
47248661 AGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
47248710 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCATACATCCT
*
47248754 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
47248800 AGTGA
1 AGTGA
47248805 CATGTCACTT
Statistics
Matches: 75, Mismatches: 14, Indels: 15
0.72 0.13 0.14
Matches are distributed among these distances:
44 8 0.11
46 33 0.44
47 30 0.40
49 4 0.05
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:47254168 original size:27 final size:27
Alignment explanation
Indices: 47254062--47254160 Score: 132
Period size: 27 Copynumber: 3.7 Consensus size: 27
47254052 AGCATGGCTG
** *
47254062 CCAGAACAGATAA-TGTGATAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
47254088 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
47254115 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
47254142 CCA-AATCAGATAATTGTGG
1 CCAGAA-CAGATAATTGTGG
47254161 GATAGCCATG
Statistics
Matches: 66, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
26 17 0.26
27 47 0.71
28 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:47254320 original size:26 final size:27
Alignment explanation
Indices: 47254276--47254351 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
47254266 CAAAAGTAAC
* *
47254276 CCTAGGGGTATAAT-GGTAATTT-TATA
1 CCTAGGGGTAT-ATCAGTAATTTCCATA
47254302 CCTAGGGGTATATCAGTAATTTCCATA
1 CCTAGGGGTATATCAGTAATTTCCATA
47254329 CAC-AGGGGTAT-TCAAGTAATTTC
1 C-CTAGGGGTATATC-AGTAATTTC
47254352 ACTATTCTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
25 2 0.05
26 20 0.45
27 21 0.48
28 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.34
Consensus pattern (27 bp):
CCTAGGGGTATATCAGTAATTTCCATA
Found at i:47261986 original size:27 final size:27
Alignment explanation
Indices: 47261949--47262040 Score: 132
Period size: 27 Copynumber: 3.4 Consensus size: 27
47261939 ATAATGAGAT
* *
47261949 AGAGTCACCAGAACAGATAATTATGGC
1 AGAGCCACCAGAACAGATAATTGTGGC
47261976 AGAGCCACCAGAACAGAT-ATATGTGGC
1 AGAGCCACCAGAACAGATAAT-TGTGGC
*
47262003 AGAGCCACCAGATCAGATAATTGTGGC
1 AGAGCCACCAGAACAGATAATTGTGGC
*
47262030 ATAGCCACCAG
1 AGAGCCACCAG
47262041 GACGCTTCCT
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
26 2 0.03
27 55 0.93
28 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
AGAGCCACCAGAACAGATAATTGTGGC
Found at i:47265930 original size:2 final size:2
Alignment explanation
Indices: 47265923--47265961 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
47265913 ATGATTTGTG
47265923 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
47265962 AGTTAAAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:47273979 original size:11 final size:11
Alignment explanation
Indices: 47273963--47274038 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
47273953 GGGTTTATGT
47273963 ATGATATGCAC
1 ATGATATGCAC
*
47273974 ATGATATG--T
1 ATGATATGCAC
47273983 ATGATATGCAC
1 ATGATATGCAC
* *
47273994 ATGACATG--T
1 ATGATATGCAC
47274003 ATGATATGCAC
1 ATGATATGCAC
*
47274014 ATGATATG--T
1 ATGATATGCAC
47274023 ATGATATGCAC
1 ATGATATGCAC
47274034 ATGAT
1 ATGAT
47274039 GTAATCATAA
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:47273983 original size:20 final size:20
Alignment explanation
Indices: 47273958--47274038 Score: 153
Period size: 20 Copynumber: 4.0 Consensus size: 20
47273948 CCCTAGGGTT
47273958 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
47273978 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
47273998 CATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
47274018 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
47274038 T
1 T
47274039 GTAATCATAA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.35, C:0.11, G:0.20, T:0.35
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:47273986 original size:9 final size:9
Alignment explanation
Indices: 47273958--47274030 Score: 56
Period size: 9 Copynumber: 7.4 Consensus size: 9
47273948 CCCTAGGGTT
47273958 TATGTATGA
1 TATGTATGA
*
47273967 TATGCACATGA
1 TATG--TATGA
47273978 TATGTATGA
1 TATGTATGA
*
47273987 TATGCACATGA
1 TATG--TATGA
*
47273998 CATGTATGA
1 TATGTATGA
*
47274007 TATGCACATGA
1 TATG--TATGA
47274018 TATGTATGA
1 TATGTATGA
47274027 TATG
1 TATG
47274031 CACATGATGT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 27 0.54
11 23 0.46
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.36
Consensus pattern (9 bp):
TATGTATGA
Found at i:47274114 original size:24 final size:24
Alignment explanation
Indices: 47274087--47274239 Score: 245
Period size: 24 Copynumber: 6.4 Consensus size: 24
47274077 GAGGAAGTGA
*
47274087 AAAAGGGCTTATGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47274111 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
47274135 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
47274159 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
47274182 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
47274206 GAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
47274230 AAAAGAGGCT
1 AAAAG-GGCT
47274240 AGGCCTCTAG
Statistics
Matches: 121, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
23 22 0.18
24 95 0.79
25 4 0.03
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:47274481 original size:30 final size:31
Alignment explanation
Indices: 47274445--47274506 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
47274435 CGTTTACAGT
47274445 AAAGGCTTC-GCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
47274475 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
47274506 A
1 A
47274507 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 9 0.31
31 20 0.69
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:47282097 original size:20 final size:20
Alignment explanation
Indices: 47282072--47282150 Score: 135
Period size: 20 Copynumber: 4.0 Consensus size: 20
47282062 CCCTAGGGTT
47282072 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
47282092 TATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
*
47282112 CATGTATGATATGCACATG-
1 TATGTATGATATGCACATGA
47282131 -ATGTATGATATGCACATGA
1 TATGTATGATATGCACATGA
47282150 T
1 T
47282151 GTAATCATAA
Statistics
Matches: 56, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
18 18 0.32
20 38 0.68
ACGTcount: A:0.34, C:0.11, G:0.20, T:0.34
Consensus pattern (20 bp):
TATGTATGATATGCACATGA
Found at i:47282128 original size:40 final size:38
Alignment explanation
Indices: 47282073--47282149 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
47282063 CCTAGGGTTT
47282073 ATGTATGATATGCACATGATATGTATGATATGCACATGAC
1 ATGTATGATATGCACATG--ATGTATGATATGCACATGAC
47282113 ATGTATGATATGCACATGATGTATGATATGCACATGA
1 ATGTATGATATGCACATGATGTATGATATGCACATGA
47282150 TGTAATCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
38 19 0.51
40 18 0.49
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.32
Consensus pattern (38 bp):
ATGTATGATATGCACATGATGTATGATATGCACATGAC
Found at i:47282150 original size:11 final size:11
Alignment explanation
Indices: 47282077--47282132 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
47282067 GGGTTTATGT
47282077 ATGATATGCAC
1 ATGATATGCAC
*
47282088 ATGATATG--T
1 ATGATATGCAC
47282097 ATGATATGCAC
1 ATGATATGCAC
* *
47282108 ATGACATG--T
1 ATGATATGCAC
47282117 ATGATATGCAC
1 ATGATATGCAC
47282128 ATGAT
1 ATGAT
47282133 GTATGATATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:47282164 original size:38 final size:38
Alignment explanation
Indices: 47282073--47282164 Score: 116
Period size: 38 Copynumber: 2.4 Consensus size: 38
47282063 CCTAGGGTTT
*
47282073 ATGTATGATATGCACATGATATGTATGATATGCACATGA
1 ATGTATCATATGCACATGA-ATGTATGATATGCACATGA
*
47282112 CATGTATGATATGCACATG-ATGTATGATATGCACATG-
1 -ATGTATCATATGCACATGAATGTATGATATGCACATGA
47282149 ATGTAATCATAATGCA
1 ATGT-ATCAT-ATGCA
47282165 TTGGGTTGGG
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
36 4 0.08
37 4 0.08
38 23 0.47
40 18 0.37
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.33
Consensus pattern (38 bp):
ATGTATCATATGCACATGAATGTATGATATGCACATGA
Found at i:47282266 original size:23 final size:24
Alignment explanation
Indices: 47282198--47282362 Score: 239
Period size: 23 Copynumber: 7.0 Consensus size: 24
47282188 GAGGAAGTGA
47282198 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47282222 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
47282246 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
47282269 AAAAGGGCTTATGCCCCAGTTA-T
1 AAAAGGGCTTATGCCCCAGTTATT
47282292 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
47282316 GAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
47282339 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
47282363 ATGATAAAGC
Statistics
Matches: 129, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
23 61 0.47
24 60 0.47
25 8 0.06
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:47282275 original size:47 final size:47
Alignment explanation
Indices: 47282198--47282362 Score: 237
Period size: 47 Copynumber: 3.5 Consensus size: 47
47282188 GAGGAAGTGA
47282198 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
*
47282245 CAAAAGGGCTTATG-CCCAGTTATCAAAAGGGCTTATGCCCCAGTTAT
1 -AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
* *
47282292 AAAAGGGCTTATGCCCCAGTTATTGAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTA-T
*
47282339 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
47282363 ATGATAAAGC
Statistics
Matches: 108, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
46 21 0.19
47 63 0.58
48 24 0.22
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.27
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTAT
Found at i:47284366 original size:40 final size:40
Alignment explanation
Indices: 47284264--47284446 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 40
47284254 AAATTGAATG
* * * * * *
47284264 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* *
47284304 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
*
47284344 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGTAGTT
* * * * * *
47284383 AAATCCGGGCTAAGACCCGAAGGCATTTGTGCAAATCGTG
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
* * *
47284423 ATATCCGGGTTAAGTCCCGTAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
47284447 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
39 35 0.29
40 85 0.71
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTAGTT
Found at i:47284399 original size:39 final size:38
Alignment explanation
Indices: 47284306--47284415 Score: 148
Period size: 39 Copynumber: 2.8 Consensus size: 38
47284296 TGGAAATTAT
* *
47284306 ATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTAGCTAT
1 ATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTAGCTAA
* *
47284346 ATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTGTTAA
1 ATCCGGGCTAAGACCCGAAGGCATT-GTGCAGTAGCTAA
47284385 ATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 ATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
47284416 AATCGTGATA
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
39 37 0.58
40 27 0.42
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (38 bp):
ATCCGGGCTAAGACCCGAAGGCATTGTGCAGTAGCTAA
Found at i:47292440 original size:39 final size:39
Alignment explanation
Indices: 47292347--47292526 Score: 165
Period size: 40 Copynumber: 4.6 Consensus size: 39
47292337 AAATTGAATG
* * * *
47292347 ATATCCGGGCTAAGCCCCGAAGACAATTATGCTGGAAAT-T
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCT--AGATGT
*
47292387 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGATG-T
*
47292426 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-AGTTGT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTAGATGT
* *
47292464 -TATCCGGGCTAAGACCCGAAGGCATTTGTGC-AAATCGT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGAT-GT
* * *
47292502 GATATCCGGGTTAAGTCCCGTAGGC
1 -ATATCCGGGCTAAGACCCGAAGGC
47292527 CTTGGTGCGG
Statistics
Matches: 120, Mismatches: 12, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
37 30 0.25
38 11 0.09
39 30 0.25
40 49 0.41
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (39 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGATGT
Found at i:47292477 original size:37 final size:37
Alignment explanation
Indices: 47292386--47292495 Score: 152
Period size: 39 Copynumber: 2.9 Consensus size: 37
47292376 TGCTGGAAAT
*
47292386 TATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGC
1 TATATCCGGGCTAAGACCCGAAGGC-ATTGTGC-AGTGC
47292425 TATATCCGGGCTAAGACCCGAAGGCATTCGTGCAGTTG-
1 TATATCCGGGCTAAGACCCGAAGGCATT-GTGCAG-TGC
47292463 T-TATCCGGGCTAAGACCCGAAGGCATTTGTGCA
1 TATATCCGGGCTAAGACCCGAAGGCA-TTGTGCA
47292496 AATCGTGATA
Statistics
Matches: 67, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
37 29 0.43
38 8 0.12
39 30 0.45
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (37 bp):
TATATCCGGGCTAAGACCCGAAGGCATTGTGCAGTGC
Found at i:47301092 original size:80 final size:80
Alignment explanation
Indices: 47301008--47301156 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
47300998 TATGGTAACC
* * * *
47301008 CGCACCAAGGCCTACGGGACTTAACCCGGATATCA-CGATTTGCACAAATGCCTTCGGGTCTTAG
1 CGCACCAAGGCCTACGGGACTTAACCCGGATAT-AGCCACTAGCACAAATGCCTTCGGGTCTTAA
47301072 CCCGGATAGAATGACT
65 CCCGGATAGAATGACT
* * * * * * *
47301088 CGCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTAGCACAATTGCCTTCGGGTCTTAAC
1 CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
47301153 CCGG
66 CCGG
47301157 TTATAATTTC
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 1 0.02
80 56 0.98
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.22
Consensus pattern (80 bp):
CGCACCAAGGCCTACGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAAC
CCGGATAGAATGACT
Found at i:47301098 original size:40 final size:38
Alignment explanation
Indices: 47301049--47301156 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 38
47301039 ATCACGATTT
*
47301049 GCACAAATGCCTTCGGGTCTTAGCCCGGATAGAATG-ACTC
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGAT-GAA-GCACTA
*
47301089 GCACGAATGCCTTCGGGTCTTAGCCCGGATGTAGCCACTA
1 GCAC-AATGCCTTCGGGTCTTAGCCCGGATGAAG-CACTA
*
47301129 GCACAATTGCCTTCGGGTCTTAACCCGG
1 GCACAA-TGCCTTCGGGTCTTAGCCCGG
47301157 TTATAATTTC
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
38 1 0.02
39 4 0.07
40 56 0.92
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (38 bp):
GCACAATGCCTTCGGGTCTTAGCCCGGATGAAGCACTA
Found at i:47306391 original size:42 final size:43
Alignment explanation
Indices: 47306343--47306455 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 43
47306333 GATGTCACTA
* ** *
47306343 TCCCAGACAGGGTCTTACACGAAATCA-AA-TACGATGCTGATG
1 TCCCAGACATGGTCTTACACGAAATCATAAGT-CGATGCCAACG
*
47306385 TCCCAGACATGGTCTTACACGTAAATCATAAGTTGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AAATCATAAGTCGATGCCAACG
47306429 TCCCAGACATGGTCTTACACGAAATCA
1 TCCCAGACATGGTCTTACACGAAATCA
47306456 CATATCCAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
42 20 0.32
43 12 0.19
44 30 0.48
45 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.23
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGAAATCATAAGTCGATGCCAACG
Found at i:47308512 original size:40 final size:40
Alignment explanation
Indices: 47308457--47308554 Score: 115
Period size: 40 Copynumber: 2.5 Consensus size: 40
47308447 TGAATGATAC
* * * *
47308457 CCGGGCTAAGCCCCGAAGACAATTATGCTGGAAATTATAT
1 CCGGGTTAAGACCCGAAGACAATTATGCTAGAAACTATAT
* * ***
47308497 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCTATAT
1 CCGGGTTAAGACCCGAAGACAATTATGCTAGAAACTATAT
47308537 CCGGGTTAAGACCCGAAG
1 CCGGGTTAAGACCCGAAG
47308555 GCATTCGTGC
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (40 bp):
CCGGGTTAAGACCCGAAGACAATTATGCTAGAAACTATAT
Found at i:47308555 original size:40 final size:39
Alignment explanation
Indices: 47308491--47308620 Score: 172
Period size: 40 Copynumber: 3.3 Consensus size: 39
47308481 ATGCTGGAAA
47308491 TTATATCCGGGTTAAGACCCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGTTAAGACCCGAAGGC-ATTCGTGC-AGTGG
* **
47308531 CTATATCCGGGTTAAGACCCGAAGGCATTCGTGCGAGTCA
1 TTATATCCGGGTTAAGACCCGAAGGCATTCGTGC-AGTGG
* *
47308571 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGCACGTGG
1 TTATATCCGGGTTAAGACCCGAAGGCATTCGTGCA-GTGG
47308611 TTATATCCGG
1 TTATATCCGG
47308621 TTGTATTCCG
Statistics
Matches: 78, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.05
40 74 0.95
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TTATATCCGGGTTAAGACCCGAAGGCATTCGTGCAGTGG
Found at i:47311300 original size:22 final size:22
Alignment explanation
Indices: 47311259--47311301 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
47311249 GACTAAGTCA
* *
47311259 ACAGAACGGCTCAACTCCATAG
1 ACAGAACGGCTAAACGCCATAG
*
47311281 ACAGAACGGCTAAAGGCCATA
1 ACAGAACGGCTAAACGCCATA
47311302 AATATCACAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.40, C:0.28, G:0.21, T:0.12
Consensus pattern (22 bp):
ACAGAACGGCTAAACGCCATAG
Found at i:47314862 original size:29 final size:29
Alignment explanation
Indices: 47314801--47314899 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
47314791 ACAGTAAGTC
47314801 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
47314829 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
47314858 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
47314886 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47314900 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:47322631 original size:29 final size:29
Alignment explanation
Indices: 47322570--47322668 Score: 168
Period size: 28 Copynumber: 3.5 Consensus size: 29
47322560 ACAGTAAGTC
47322570 CGCACACTTAGTGCT-TA-ATATTCAAACT
1 CGCACACTTAGTGCTATACA-ATTCAAACT
47322598 CGCACACTTAGTGCTATACAATTCAAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
47322627 CGCACACTTAGTGCTATACAATT-AAACT
1 CGCACACTTAGTGCTATACAATTCAAACT
47322655 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47322669 CAATCTCATT
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
28 34 0.49
29 34 0.49
30 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.12, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCTATACAATTCAAACT
Found at i:47331375 original size:25 final size:25
Alignment explanation
Indices: 47331328--47331395 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
47331318 GAACTAGAAT
* *
47331328 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* * *
47331353 TAGAATCGGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
47331378 CAGAATCAAAACCAGAAT
1 CAGAATCAGAATCAGAAT
47331396 TGGTATCAGG
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:47331402 original size:31 final size:31
Alignment explanation
Indices: 47331367--47331426 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
47331357 ATCGGAATCA
47331367 GTATCAGGTAACAGAATCAAAACCAGAATTG
1 GTATCAGGTAACAGAATCAAAACCAGAATTG
* *
47331398 GTATCAGGTAACAGAATTAAAATCAGAAT
1 GTATCAGGTAACAGAATCAAAACCAGAAT
47331427 GTGAATGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.47, C:0.13, G:0.18, T:0.22
Consensus pattern (31 bp):
GTATCAGGTAACAGAATCAAAACCAGAATTG
Found at i:47332188 original size:188 final size:188
Alignment explanation
Indices: 47331846--47332418 Score: 963
Period size: 188 Copynumber: 3.0 Consensus size: 188
47331836 TACCCCACAA
* * * *
47331846 GGGTATCTCGGTAATTCTACCCTAC-AGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
* * * * *
47331910 TCA-TTCTACCCTATAGGGGTATTTTGGTAATTCTACCCTACAAGGGTATTTCGGTTATTCTACC
66 T-ATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACC
* *
47331974 CTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCAGTTATTCCACCCTCAG
130 CTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTTATTCCACCCTCAG
47332033 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
47332098 TATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
66 TATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
47332163 TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTTATTCCACCCTCAG
131 TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTTATTCCACCCTCAG
47332221 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
1 GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
*
47332286 TATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTGCCC
66 TATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
* * *
47332351 TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC-GGTATTTCTACCCTACAA
131 TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTTA-TTCCACCCT-CAG
47332410 GGGTATTTC
1 GGGTATTTC
47332419 GGTATTTACA
Statistics
Matches: 367, Mismatches: 15, Indels: 6
0.95 0.04 0.02
Matches are distributed among these distances:
187 27 0.07
188 329 0.90
189 11 0.03
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (188 bp):
GGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGG
TATTTCTACCCTACAAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
TACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTTATTCCACCCTCAG
Found at i:47332425 original size:27 final size:27
Alignment explanation
Indices: 47331828--47332422 Score: 845
Period size: 27 Copynumber: 22.1 Consensus size: 27
47331818 GGGGCAAAAT
* * *
47331828 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
47331855 GGTAATTCTACCCTAC-AGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47331881 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47331908 GGTCATTCTACCCTATAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
47331935 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47331962 GGTTATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47331989 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47332016 AGTTATTCCACCCT-CAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332042 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332069 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47332096 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332123 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332150 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332177 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * * *
47332204 AGTTATTCCACCCT-CAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332230 AGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332257 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47332284 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332311 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
47332338 AGTAATTCTGCCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332365 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
47332392 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
47332419 GGTA
1 GGTA
47332423 TTTACACAAA
Statistics
Matches: 507, Mismatches: 58, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
26 72 0.14
27 435 0.86
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:47332458 original size:27 final size:26
Alignment explanation
Indices: 47332410--47332508 Score: 74
Period size: 27 Copynumber: 3.7 Consensus size: 26
47332400 TACCCTACAA
* *
47332410 GGGTATTTCGGT-ATTTACACAAAGTAG
1 GGGTATTTTGGTAATTT-TACAAA-TAG
* *
47332437 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-TAG
* *** *
47332464 TGGTATTTTGGTAATTTTATTGATCG
1 GGGTATTTTGGTAATTTTACAAATAG
47332490 AGGGTATTTTGGTAATTTT
1 -GGGTATTTTGGTAATTTT
47332509 GTAAACCAAG
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
27 53 0.93
28 4 0.07
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.43
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATAG
Found at i:47332520 original size:27 final size:27
Alignment explanation
Indices: 47332437--47332523 Score: 111
Period size: 27 Copynumber: 3.2 Consensus size: 27
47332427 CACAAAGTAG
*
47332437 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
* ** * *
47332464 TGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTATAAACCAA
*
47332491 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAA
47332518 GGGTAT
1 GGGTAT
47332524 GTCAGTAATT
Statistics
Matches: 48, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAA
Found at i:47332547 original size:54 final size:54
Alignment explanation
Indices: 47332437--47332549 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
47332427 CACAAAGTAG
* * ** *
47332437 GGGTATTTTGGTAATTTTACAAACCAATGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATGTCAGTAATTTTATTCATCGA
** *
47332491 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATGTCAGTAATTTT-TTACATTGA
1 GGGTATTTTGGTAATTTTACAAACCAAGGGTATGTCAGTAATTTTATT-CATCGA
47332545 GGGTA
1 GGGTA
47332550 AAATGGTAAT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
53 2 0.04
54 48 0.96
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAAGGGTATGTCAGTAATTTTATTCATCGA
Found at i:47332557 original size:54 final size:54
Alignment explanation
Indices: 47332499--47332726 Score: 251
Period size: 54 Copynumber: 4.2 Consensus size: 54
47332489 GAGGGTATTT
* * * * * * * *
47332499 TGGTAATTTTGTAAACCAAGGGTATGTCAGTAATTTTTTACATTGAGGGTAAAA
1 TGGTAATTCTATAAACCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAA
* * *
47332553 TGGTAATTCTATAAATCGAGGGTAAGACGGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAACCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAA
* * * * * *
47332607 TAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTATAAACCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
47332661 TAGTAATTCTATAAATCGAGGGTAAAAC-GATAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTATAAACCAAGGGTAAGACAG-TAATTCTGTAAATCGAGGGTAAAA
47332715 TGGTAATTCTAT
1 TGGTAATTCTAT
47332727 CTTACAGGAG
Statistics
Matches: 157, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
53 1 0.01
54 156 0.99
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (54 bp):
TGGTAATTCTATAAACCAAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:47332558 original size:27 final size:27
Alignment explanation
Indices: 47332543--47332726 Score: 287
Period size: 27 Copynumber: 6.8 Consensus size: 27
47332533 TTTTTACATT
47332543 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* * *
47332570 GAGGGTAAGACGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
47332597 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
47332624 GAGGGTAAAACGGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
*
47332651 GAGGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
* * *
47332678 GAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTATAAATC
47332705 GAGGGTAAAATGGTAATTCTAT
1 GAGGGTAAAATGGTAATTCTAT
47332727 CTTACAGGAG
Statistics
Matches: 139, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 139 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTATAAATC
Found at i:47332585 original size:81 final size:81
Alignment explanation
Indices: 47332500--47332726 Score: 251
Period size: 81 Copynumber: 2.8 Consensus size: 81
47332490 AGGGTATTTT
* ** * * * * *
47332500 GGTAATTTTGTAAACCAAGGGT-ATGTCAGTAATTTTTTACATTGAGGGTAAAATGGTAATTCTA
1 GGTAATTCTGTAAACCAAGGGTAAAAT-AGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
47332564 TAAATCGAGGGTAAGAC
65 TAAATCGAGGGTAAGAC
* *
47332581 GGTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
1 GGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
* *
47332646 AAATCGAGGGTAAAAT
66 AAATCGAGGGTAAGAC
* * * * * * *
47332662 AGTAATTCTATAAATCGAGGGTAAAA-CGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCTA
1 GGTAATTCTGTAAACCAAGGGTAAAATAG-TAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
47332726 T
65 T
47332727 CTTACAGGAG
Statistics
Matches: 127, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 1 0.01
81 124 0.98
82 2 0.02
ACGTcount: A:0.38, C:0.09, G:0.22, T:0.31
Consensus pattern (81 bp):
GGTAATTCTGTAAACCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTCTAT
AAATCGAGGGTAAGAC
Found at i:47332766 original size:27 final size:27
Alignment explanation
Indices: 47332736--47332885 Score: 169
Period size: 27 Copynumber: 5.6 Consensus size: 27
47332726 TCTTACAGGA
47332736 GTATTTCAGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* *
47332763 GTATTTTAGTAATTTTGCAAA-CTGAGG
1 GTATTTCAGTAATTTTACAAATC-GAGG
*
47332790 GTATTTCTGTAATTTTACAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* ** * *
47332817 ATATTTGGGTAATTTTATAAATCGGGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
47332844 GTACTTT-GGTAATTTTACAAGTTGAGG
1 GTA-TTTCAGTAATTTTACAAATCGAGG
47332871 GTATTTCAGTAATTT
1 GTATTTCAGTAATTT
47332886 GGTAAACTAA
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.04
27 95 0.92
28 4 0.04
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:47332802 original size:81 final size:81
Alignment explanation
Indices: 47332732--47332884 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
47332722 TCTATCTTAC
* *
47332732 AGGAGTATTTCAGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTGCAAACTGAGGGTATTTC
1 AGGA-TATTTCAGTAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACTGAGGGTATTTC
* *
47332797 TGTAATTTTACAAATCG
65 AGTAATTCTACAAATCG
** * * * **
47332814 AGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTTCA
1 AGGATATTTCAGTAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACTGAGGGTATTTCA
47332879 GTAATT
66 GTAATT
47332885 TGGTAAACTA
Statistics
Matches: 61, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
81 57 0.93
82 4 0.07
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (81 bp):
AGGATATTTCAGTAATTTTACAAATCGAGGGTACTTTAGTAATTTTACAAACTGAGGGTATTTCA
GTAATTCTACAAATCG
Found at i:47339822 original size:49 final size:50
Alignment explanation
Indices: 47339760--47339888 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 50
47339750 TCAAGTCGAT
* *
47339760 GCCATGTCCCAGACATGGTCTTACACTGACTATTGA-A-ATC-GAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACT-CTCACATATCTG-GGCCGAC
* * *
47339809 GGCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATATCTGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTCTCACATATCTGGGCCGAC
47339859 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
47339889 ACATCTCATA
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
48 3 0.04
49 29 0.42
50 35 0.51
51 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCTCACATATCTGGGCCGAC
Found at i:47339939 original size:46 final size:45
Alignment explanation
Indices: 47339707--47340027 Score: 189
Period size: 46 Copynumber: 6.8 Consensus size: 45
47339697 AGGGTATAAT
* * * * *
47339707 GCCGATGCCATGTCCCAAACATGGTATTACATTGGCTCAC-CCATCAA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACATC-TCGA
* * * ** **
47339754 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCGA
* * * * *
47339802 GGCCGACGGCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCTGT
1 -GCCGA-TGCATGTCCCAAACAT-GTCTTACACTGGCT-T-ACATCTC-GA
* * *
47339853 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACATCTCATA
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTACATCTC-GA
*
47339899 GCCGATGCATGTCCCAAACATGTCTCACACTGGCTTACATCTCGA
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGA
* * * **
47339944 GCCCGATGCATGTCCCAAACATGTCTTACACTAGCTTTCGTCTTAA
1 G-CCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGA
* * *
47339990 TGCCAATGCCATGTCCCAGACATGGTCTTACATTGGCT
1 -GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCT
47340028 CTTATAATGT
Statistics
Matches: 220, Mismatches: 41, Indels: 25
0.77 0.14 0.09
Matches are distributed among these distances:
44 11 0.05
45 15 0.07
46 63 0.29
47 46 0.21
48 15 0.07
49 33 0.15
50 36 0.16
51 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACATCTCGA
Found at i:47340694 original size:38 final size:38
Alignment explanation
Indices: 47340643--47340718 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
47340633 ATTTATTTCA
47340643 CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
1 CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
47340681 CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
1 CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
47340719 AAACATGTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.03, T:0.34
Consensus pattern (38 bp):
CAACCATAACTCATATTTTTCCATAAAATTTCAGAAAT
Found at i:47344012 original size:31 final size:31
Alignment explanation
Indices: 47343977--47344040 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
47343967 CCTTTTCATA
47343977 TTTCATA-TTC-TATAACGCTGGGCCGAAGCCT
1 TTTCATATTTCATATAA--CTGGGCCGAAGCCT
*
47344008 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATATAACTGGGCCGAAGCCT
47344039 TT
1 TT
47344041 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 23 0.77
32 3 0.10
33 4 0.13
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATATAACTGGGCCGAAGCCT
Found at i:47344283 original size:24 final size:24
Alignment explanation
Indices: 47344232--47344398 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
47344222 GCTTTATCAT
*
47344232 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
47344257 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
47344281 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
47344304 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
47344328 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
47344352 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47344376 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47344399 TCACTTCCTC
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47344335 original size:71 final size:71
Alignment explanation
Indices: 47344231--47344398 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
47344221 TGCTTTATCA
*
47344231 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
47344295 AGCCCTTT
64 AGCCCTTT
* * **
47344303 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
47344368 CCCTTT
66 CCCTTT
47344374 TAATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
47344399 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:47344469 original size:9 final size:9
Alignment explanation
Indices: 47344455--47344527 Score: 56
Period size: 9 Copynumber: 7.4 Consensus size: 9
47344445 ACATCATGTG
47344455 CATATCATA
1 CATATCATA
*
47344464 CATATCATGTG
1 CATATCA--TA
47344475 CATATCATA
1 CATATCATA
* *
47344484 CATGTCATGTG
1 CATATCA--TA
47344495 CATATCATA
1 CATATCATA
*
47344504 CATATCATGTG
1 CATATCA--TA
47344515 CATATCATA
1 CATATCATA
47344524 CATA
1 CATA
47344528 AACCCTAGGG
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 27 0.54
11 23 0.46
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:47344472 original size:20 final size:20
Alignment explanation
Indices: 47344447--47344527 Score: 153
Period size: 20 Copynumber: 4.0 Consensus size: 20
47344437 TTATGATTAC
47344447 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
47344467 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
47344487 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
47344507 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
47344527 A
1 A
47344528 AACCCTAGGG
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47344478 original size:11 final size:11
Alignment explanation
Indices: 47344447--47344522 Score: 74
Period size: 11 Copynumber: 7.5 Consensus size: 11
47344437 TTATGATTAC
47344447 ATCATGTGCAT
1 ATCATGTGCAT
*
47344458 ATCA--TACAT
1 ATCATGTGCAT
47344467 ATCATGTGCAT
1 ATCATGTGCAT
*
47344478 ATCA--TACAT
1 ATCATGTGCAT
*
47344487 GTCATGTGCAT
1 ATCATGTGCAT
*
47344498 ATCA--TACAT
1 ATCATGTGCAT
47344507 ATCATGTGCAT
1 ATCATGTGCAT
47344518 ATCAT
1 ATCAT
47344523 ACATAAACCC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:47350714 original size:30 final size:31
Alignment explanation
Indices: 47350680--47350742 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
47350670 CCTTTTCATA
*
47350680 TTTCATA-TTCATAACGCTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
47350710 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
47350741 TT
1 TT
47350743 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 7 0.24
31 22 0.76
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:47350998 original size:23 final size:24
Alignment explanation
Indices: 47350934--47351099 Score: 248
Period size: 24 Copynumber: 7.0 Consensus size: 24
47350924 GCTTTATCAT
*
47350934 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
47350959 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
47350983 ATAACT-GGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
47351005 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
47351029 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
47351053 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47351077 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47351100 TCACTTCCTC
Statistics
Matches: 132, Mismatches: 6, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
22 6 0.05
23 30 0.23
24 84 0.64
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47351169 original size:9 final size:9
Alignment explanation
Indices: 47351155--47351227 Score: 56
Period size: 9 Copynumber: 7.4 Consensus size: 9
47351145 TACTCATGTG
47351155 CATATCATA
1 CATATCATA
*
47351164 CATATCATGTG
1 CATATCA--TA
47351175 CATATCATA
1 CATATCATA
* *
47351184 CATGTCATGTG
1 CATATCA--TA
47351195 CATATCATA
1 CATATCATA
*
47351204 CATATCATGTG
1 CATATCA--TA
47351215 CATATCATA
1 CATATCATA
47351224 CATA
1 CATA
47351228 AACCCTAGGG
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 27 0.54
11 23 0.46
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:47351171 original size:20 final size:20
Alignment explanation
Indices: 47351148--47351227 Score: 151
Period size: 20 Copynumber: 4.0 Consensus size: 20
47351138 TTATGATTAC
47351148 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
47351168 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATA
47351188 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
47351208 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
47351228 AACCCTAGGG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.35
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:47351178 original size:11 final size:11
Alignment explanation
Indices: 47351148--47351222 Score: 72
Period size: 11 Copynumber: 7.4 Consensus size: 11
47351138 TTATGATTAC
47351148 TCATGTGCATA
1 TCATGTGCATA
*
47351159 TCA--TACATA
1 TCATGTGCATA
47351168 TCATGTGCATA
1 TCATGTGCATA
* *
47351179 TCA--TACATG
1 TCATGTGCATA
47351188 TCATGTGCATA
1 TCATGTGCATA
*
47351199 TCA--TACATA
1 TCATGTGCATA
47351208 TCATGTGCATA
1 TCATGTGCATA
47351219 TCAT
1 TCAT
47351223 ACATAAACCC
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 23 0.46
11 27 0.54
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:47354274 original size:39 final size:39
Alignment explanation
Indices: 47354217--47354306 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 39
47354207 CAATCTCTAC
* *
47354217 ACACTTTATCAACTATCAAATGCCTGCCTAACGGGTTTT
1 ACACTTTATCAACTATCAAACGCCTGCCTAACGAGTTTT
47354256 ACACTTTATCAA-TAATCAAACGCCTGCCTAACGAGTTTT
1 ACACTTTATCAACT-ATCAAACGCCTGCCTAACGAGTTTT
47354295 ACACTTTTATCA
1 ACAC-TTTATCA
47354307 CAAATTCGAT
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
38 1 0.02
39 39 0.83
40 7 0.15
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (39 bp):
ACACTTTATCAACTATCAAACGCCTGCCTAACGAGTTTT
Found at i:47364700 original size:53 final size:54
Alignment explanation
Indices: 47364620--47364815 Score: 200
Period size: 53 Copynumber: 3.6 Consensus size: 54
47364610 TTCCTTTTTA
* * *
47364620 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTGTCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTATAG
* * * * *
47364673 AACTCACCATTG-CATTGCCTTGGCATGGTTTTACATGG-GATCTTTGCCTTATAG
1 AACTTACCAATGCCA-TGCCTTGACATGGTCTTACATGGTG-TCCTTGCCTTATAG
** * * * * *
47364727 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTATAG
*
47364782 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTAC
47364816 TTGATATCCT
Statistics
Matches: 114, Mismatches: 23, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 3 0.03
53 41 0.36
54 30 0.26
55 38 0.33
56 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTGTCCTTGCCTTATAG
Found at i:47369225 original size:54 final size:53
Alignment explanation
Indices: 47369162--47369334 Score: 231
Period size: 54 Copynumber: 3.2 Consensus size: 53
47369152 ATTACTGAAA
** * *
47369162 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTA-CGTTT
*
47369216 CACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTAC-GTTT
* * *
47369270 TACCCTCGATTTACAAAATTACTATTTTACCC-CCAGTTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCATTTTACCCTCGA-TTTACAGAATTA-CGTTT
47369324 TACCCTCGATT
1 TACCCTCGATT
47369335 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
53 3 0.03
54 103 0.96
55 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (53 bp):
TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACGTTT
Found at i:47369278 original size:81 final size:81
Alignment explanation
Indices: 47369162--47369334 Score: 224
Period size: 81 Copynumber: 2.1 Consensus size: 81
47369152 ATTACTGAAA
** * * * *
47369162 TACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTA-TCGTTTCACCCTC-GA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACT-ATTTCACCCCCAG-
47369225 TTTACAAAATTACCATTT
64 TTTACAAAATTACCATTT
** *
47369243 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTTTACCCCCAGTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTCACCCCCAGTT
*
47369308 TACAAAATTACCGTTT
66 TACAAAATTACCATTT
47369324 TACCCTCGATT
1 TACCCTCGATT
47369335 GTGAAATTAC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
81 78 0.98
82 2 0.03
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACTATTTCACCCCCAGTT
TACAAAATTACCATTT
Found at i:47369292 original size:27 final size:27
Alignment explanation
Indices: 47369143--47369334 Score: 190
Period size: 27 Copynumber: 7.1 Consensus size: 27
47369133 GAATACTTTA
* ***
47369143 ATTTACCAAATTACTGAAATACCCTCG
1 ATTTACAAAATTACTGTTTTACCCTCG
** * **
47369170 ATTTGTAGAATTACCATTTTACCCTCG
1 ATTTACAAAATTACTGTTTTACCCTCG
* * *
47369197 ATTTATAGAATTA-TCGTTTCACCCTCG
1 ATTTACAAAATTACT-GTTTTACCCTCG
**
47369224 ATTTACAAAATTACCATTTTACCCTCG
1 ATTTACAAAATTACTGTTTTACCCTCG
*
47369251 ATTTACAGAATTACTGTTTTACCCTCG
1 ATTTACAAAATTACTGTTTTACCCTCG
* *
47369278 ATTTACAAAATTACTATTTTACCC-CC
1 ATTTACAAAATTACTGTTTTACCCTCG
*
47369304 AGTTTACAAAATTACCGTTTTACCCTCG
1 A-TTTACAAAATTACTGTTTTACCCTCG
47369332 ATT
1 ATT
47369335 GTGAAATTAC
Statistics
Matches: 134, Mismatches: 27, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
26 2 0.01
27 130 0.97
28 2 0.01
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
ATTTACAAAATTACTGTTTTACCCTCG
Found at i:47369476 original size:81 final size:81
Alignment explanation
Indices: 47369297--47369488 Score: 203
Period size: 81 Copynumber: 2.4 Consensus size: 81
47369287 ATTACTATTT
* * *** * * **
47369297 TACCCCCAGTTTACAAAATTACCGTTTTACC-CTCGATTGTGAAATTACTGAAATACCCCTGTAG
1 TACCCCTAGTTTACAAAATTACAGAAATACCACTGGTTTGTGAAATTACTGAAATACCCCAATAG
*
47369361 GATAGAATTACCAAAA
66 GATAAAATTACCAAAA
**
47369377 TACCCCTAGTTTGTAAAATTATCA-AAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAAT
1 TACCCCTAGTTTACAAAATTA-CAGAAATACCACTGGTTTGTGAAATTACTGAAATACCC-CAAT
**
47369441 TTG-TAAAATTACCAAAA
64 AGGATAAAATTACCAAAA
47369458 TACCCCTCA-TTTACAAAATTACAGAAATACC
1 TACCCCT-AGTTTACAAAATTACAGAAATACC
47369489 CTTGACTTTT
Statistics
Matches: 91, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
80 24 0.26
81 63 0.69
82 4 0.04
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (81 bp):
TACCCCTAGTTTACAAAATTACAGAAATACCACTGGTTTGTGAAATTACTGAAATACCCCAATAG
GATAAAATTACCAAAA
Found at i:47369477 original size:54 final size:54
Alignment explanation
Indices: 47369386--47369567 Score: 177
Period size: 54 Copynumber: 3.3 Consensus size: 54
47369376 ATACCCCTAG
* ***
47369386 TTTGTAAAATTATCAAAATACCACTGGTTTGTGAAATTACTGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
* ** * * *
47369440 TTTGTAAAATTACCAAAATACCCCTCATTTACAAAATTACAGAAATACCCTTGAC
1 TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCC-TCAA
* * * ***
47369495 TTTTTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTGG
1 TTTGT-AAAATTACCA-AAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
*
47369550 TTTGTAAATTTACCAAAA
1 TTTGTAAAATTACCAAAA
47369568 CACCCTTGTA
Statistics
Matches: 101, Mismatches: 23, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
54 51 0.50
55 13 0.13
56 37 0.37
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.34
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGGTTTACAAAATTACTGAAATACCCTCAA
Found at i:47369562 original size:27 final size:27
Alignment explanation
Indices: 47369333--47369562 Score: 126
Period size: 27 Copynumber: 8.4 Consensus size: 27
47369323 TTACCCTCGA
* *
47369333 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTAAAATTACTGAAATACCCTTGGT
** * ** * *
47369359 AGGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACTGAAATACCCTTGGT
*
47369387 TTGTAAAATTA-TCAAAATACCAC-TGGT
1 TTGTAAAATTACT-GAAATACC-CTTGGT
* ***
47369414 TTGTGAAATTACTGAAATACCCTCAAT
1 TTGTAAAATTACTGAAATACCCTTGGT
** * **
47369441 TTGTAAAATTACCAAAATACCCCTCAT
1 TTGTAAAATTACTGAAATACCCTTGGT
** * *
47369468 TTACAAAATTACAGAAATACCCTTGACT
1 TTGTAAAATTACTGAAATACCCTTG-GT
* *
47369496 TTTTAAAAATTA-TAGAAATACCATTGGT
1 TTGT-AAAATTACT-GAAATACCCTTGGT
**
47369524 TTACAAAATTACTGAAATACCCTTGGT
1 TTGTAAAATTACTGAAATACCCTTGGT
*
47369551 TTGTAAATTTAC
1 TTGTAAAATTAC
47369563 CAAAACACCC
Statistics
Matches: 154, Mismatches: 40, Indels: 19
0.72 0.19 0.09
Matches are distributed among these distances:
26 2 0.01
27 122 0.79
28 12 0.08
29 18 0.12
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (27 bp):
TTGTAAAATTACTGAAATACCCTTGGT
Found at i:47370516 original size:24 final size:25
Alignment explanation
Indices: 47370480--47370547 Score: 102
Period size: 24 Copynumber: 2.8 Consensus size: 25
47370470 GGAAGTGCTA
*
47370480 AAAGGGCTCTGCCCCAGTTTACT-G
1 AAAGGGCTTTGCCCCAGTTTACTAG
* *
47370504 AAAGGGCTTTGCCCCAATTTATTAG
1 AAAGGGCTTTGCCCCAGTTTACTAG
47370529 AAAGGGCTTTGCCCCAGTT
1 AAAGGGCTTTGCCCCAGTT
47370548 ATTAAAAGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 20 0.51
25 19 0.49
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.28
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAGTTTACTAG
Found at i:47370537 original size:25 final size:25
Alignment explanation
Indices: 47370480--47370560 Score: 96
Period size: 24 Copynumber: 3.3 Consensus size: 25
47370470 GGAAGTGCTA
* * *
47370480 AAAGGGCTCTGCCCCAGTTTACT-G
1 AAAGGGCTTTGCCCCAATTTATTAG
47370504 AAAGGGCTTTGCCCCAATTTATTAG
1 AAAGGGCTTTGCCCCAATTTATTAG
*
47370529 AAAGGGCTTTGCCCC-AGTTATTA-
1 AAAGGGCTTTGCCCCAATTTATTAG
47370552 AAAGAGGCT
1 AAAG-GGCT
47370561 AGGCTTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
23 4 0.08
24 31 0.61
25 16 0.31
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAGGGCTTTGCCCCAATTTATTAG
Found at i:47370760 original size:42 final size:42
Alignment explanation
Indices: 47370695--47370782 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
47370685 TAGTCTTACC
* * *
47370695 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATCACATGTGATATTG
47370737 AAATAGGCTTGCATACATCCATTGACATCACATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATCACATGTGATATTG
47370779 AAAT
1 AAAT
47370783 GGGCCTAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATCACATGTGATATTG
Found at i:47370845 original size:31 final size:31
Alignment explanation
Indices: 47370810--47370893 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
47370800 CGTTTACAGT
47370810 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
47370841 AAAGGCTTTGACCCAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
47370872 AAAGGCTTCGGTCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
47370894 TCAAGACTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 5 0.11
31 42 0.89
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:47373706 original size:53 final size:53
Alignment explanation
Indices: 47373626--47373730 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
47373616 ATAAACTACG
* ** * *
47373626 ATAAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGAAATAGTGAGTTC
1 ATAAGGCAAAGATACCACATAAGACCATGCCAAGACATGGAAATAGTAAGTTC
* * *
47373679 ATAAGGCAAGGATACCACATAAGACCATGTCAAGACATGGCAATAGTAAGTT
1 ATAAGGCAAAGATACCACATAAGACCATGCCAAGACATGGAAATAGTAAGTT
47373731 TAAAAAAGAA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.40, C:0.18, G:0.23, T:0.19
Consensus pattern (53 bp):
ATAAGGCAAAGATACCACATAAGACCATGCCAAGACATGGAAATAGTAAGTTC
Found at i:47375342 original size:28 final size:28
Alignment explanation
Indices: 47375254--47375357 Score: 88
Period size: 28 Copynumber: 3.7 Consensus size: 28
47375244 TAAATCTTAT
*
47375254 CTGGGCCTAAT-GGCAATATGAATGTGA
1 CTGGGCCTAATGGGCAATATGAAAGTGA
* * *
47375281 TTTAGGCCTAATGGGCCACT-T-AAATGTGA
1 -CTGGGCCTAATGGG-CAATATGAAA-GTGA
* * *
47375310 TTGGGCCTAATGGGCCATATGAAAGAGA
1 CTGGGCCTAATGGGCAATATGAAAGTGA
*
47375338 CTGGGCCTAGTGGGCAATAT
1 CTGGGCCTAATGGGCAATAT
47375358 ACAGGTATGT
Statistics
Matches: 60, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
27 2 0.03
28 45 0.75
29 10 0.17
30 3 0.05
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (28 bp):
CTGGGCCTAATGGGCAATATGAAAGTGA
Found at i:47378271 original size:18 final size:19
Alignment explanation
Indices: 47378250--47378285 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
47378240 AATAAAGAAA
*
47378250 GGAATTAAA-AAGAAAAGG
1 GGAATAAAATAAGAAAAGG
47378268 GGAATAAAATAAGAAAAG
1 GGAATAAAATAAGAAAAG
47378286 AAAAAGGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.00, G:0.25, T:0.11
Consensus pattern (19 bp):
GGAATAAAATAAGAAAAGG
Found at i:47379679 original size:59 final size:58
Alignment explanation
Indices: 47379583--47379714 Score: 246
Period size: 59 Copynumber: 2.3 Consensus size: 58
47379573 AAAATTGTAC
47379583 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
*
47379641 AGCACTAAGTGTGCGAGCTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATAT
1 AGCACTAAGTGTGCGAACTGAAAA-TATATAGCACTAAGTGTGCGAGCTGAAAATATAT
47379700 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
47379715 GATTCACTAT
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
58 23 0.32
59 49 0.68
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.24
Consensus pattern (58 bp):
AGCACTAAGTGTGCGAACTGAAAATATATAGCACTAAGTGTGCGAGCTGAAAATATAT
Found at i:47379703 original size:88 final size:89
Alignment explanation
Indices: 47379553--47379714 Score: 263
Period size: 88 Copynumber: 1.8 Consensus size: 89
47379543 GACAAGATTG
* * *
47379553 GCACTAAGTGTGCGGGTTTAAAAATTGTACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
47379618 AAGTGTGCGAGCTGAAAATATATA
66 AAGTGTGCGAGCTGAAAATATATA
* * *
47379642 GCACTAAGTGTGCGAG-CTGAAAATTATATAGCACTAAGTGTGCGAGCTGAAAATATATAGCACT
1 GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
47379706 AAGTGTGCG
66 AAGTGTGCG
47379715 GATTCACTAT
Statistics
Matches: 67, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
88 52 0.78
89 15 0.22
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (89 bp):
GCACTAAGTGTGCGAGTCTAAAAATTATACAGCACTAAGTGTGCGAACTGAAAATATATAGCACT
AAGTGTGCGAGCTGAAAATATATA
Done.