Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr05 97880472
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 97880472
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 192 characters in sequence are not A, C, G, or T
File 162 of 335
Found at i:47726806 original size:93 final size:93
Alignment explanation
Indices: 47726647--47726818 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
47726637 GGATGGTTGA
* *
47726647 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
47726712 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
47726740 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
47726805 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
47726819 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:47737026 original size:39 final size:39
Alignment explanation
Indices: 47736976--47737056 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
47736966 TGTTTGATGT
47736976 TTCGAGACAGGATATGTGTGCCGAAAAACGATAAATTGA
1 TTCGAGACAGGATATGTGTGCCGAAAAACGATAAATTGA
47737015 TTCGAGACAGGATATGTGTGCCGAAAAACGATAAATTGA
1 TTCGAGACAGGATATGTGTGCCGAAAAACGATAAATTGA
47737054 TTC
1 TTC
47737057 AGAAAATATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.37, C:0.14, G:0.25, T:0.25
Consensus pattern (39 bp):
TTCGAGACAGGATATGTGTGCCGAAAAACGATAAATTGA
Found at i:47746060 original size:79 final size:81
Alignment explanation
Indices: 47745924--47746108 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
47745914 TCGAATGATG
*
47745924 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
47745988 TGTGCGAGTTACTA-A
66 TATGCGAGTTACTATA
* * **
47746003 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
47746065 TTTATGCGAGTTACTATA
64 TTTATGCGAGTTACTATA
* *
47746083 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47746109 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 33 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TATGCGAGTTACTATA
Found at i:47746115 original size:40 final size:39
Alignment explanation
Indices: 47745925--47746108 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
47745915 CGAATGATGT
* * *
47745925 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
47745965 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
47746005 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
47746043 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
47746084 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47746109 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47746130 original size:79 final size:78
Alignment explanation
Indices: 47745925--47746141 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
47745915 CGAATGATGT
* *
47745925 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
* *
47745988 TGTGCGAGTTACTAATT
62 TATGCGAGTTACTAATA
*
47746005 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
47746068 ATGCGAGTTACT-ATAA
63 ATGCGAGTTACTAAT-A
* ** *
47746084 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
47746142 TACGTGATTC
Statistics
Matches: 118, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTATG
CGAGTTACTAATA
Found at i:47754236 original size:79 final size:81
Alignment explanation
Indices: 47754100--47754284 Score: 245
Period size: 79 Copynumber: 2.3 Consensus size: 81
47754090 TCGAATGATG
*
47754100 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
*
47754164 TGTGCGAGTTACTA-A
66 TATGCGAGTTACTATA
* * **
47754179 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGAT-CCGAAGGCA
47754241 TTTATGCGAGTTACTATA
64 TTTATGCGAGTTACTATA
* *
47754259 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
47754285 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.63
80 33 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACTAAATCCGGACTAAGATCCGAAGGCATT
TATGCGAGTTACTATA
Found at i:47754291 original size:40 final size:39
Alignment explanation
Indices: 47754101--47754284 Score: 221
Period size: 40 Copynumber: 4.6 Consensus size: 39
47754091 CGAATGATGT
* * *
47754101 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
47754141 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
47754181 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
47754219 TCCGGGTTAAGTCCCGAAGGCATTTATGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
47754260 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
47754285 AACGAGTAGC
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
39 36 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:47754306 original size:79 final size:78
Alignment explanation
Indices: 47754101--47754317 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
47754091 CGAATGATGT
* *
47754101 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTAG-CTATATCCGG-TTAAG-TCCGAAGGCATT
* *
47754164 TGTGCGAGTTACTAATT
62 TATGCGAGTTACTAATA
*
47754181 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
47754244 ATGCGAGTTACT-ATAA
63 ATGCGAGTTACTAAT-A
* ** *
47754260 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
47754318 TACGTGATTC
Statistics
Matches: 118, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTATG
CGAGTTACTAATA
Found at i:47757187 original size:28 final size:27
Alignment explanation
Indices: 47757121--47757190 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
47757111 ATAGTGAGTC
47757121 CGCACACTTAGTGCTATAAAATCAACT
1 CGCACACTTAGTGCTATAAAATCAACT
* * *
47757148 CCCACACCTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATAAAATC-AACT
47757176 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
47757191 GTACAAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.54
28 17 0.46
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATAAAATCAACT
Found at i:47762884 original size:46 final size:45
Alignment explanation
Indices: 47762780--47762894 Score: 135
Period size: 46 Copynumber: 2.5 Consensus size: 45
47762770 TGCCGCCATA
* *
47762780 TCCCGGACATGGTCTTACACTAGC-TAAACTCATAGTCGATGCACG
1 TCCCGGACAT-GTCTTACACTAGCTTAAACTCATAGGCGATACACG
* * * *
47762825 TCCCAGACATGTCTTACACTAGCTTACA-TCTTGAGGCTGATACATG
1 TCCCGGACATGTCTTACACTAGCTTAAACTCAT-AGGC-GATACACG
47762871 TCCCGGACATGTCTTACACTAGCT
1 TCCCGGACATGTCTTACACTAGCT
47762895 CTCGTCTCAA
Statistics
Matches: 60, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 16 0.27
45 15 0.25
46 29 0.48
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (45 bp):
TCCCGGACATGTCTTACACTAGCTTAAACTCATAGGCGATACACG
Found at i:47764690 original size:17 final size:17
Alignment explanation
Indices: 47764670--47764703 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
47764660 TGTCATTAAA
*
47764670 GGTTAAAATGGTAAAAT
1 GGTTAAAATGATAAAAT
*
47764687 GGTTTAAATGATAAAAT
1 GGTTAAAATGATAAAAT
47764704 AATTAAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (17 bp):
GGTTAAAATGATAAAAT
Found at i:47765609 original size:43 final size:43
Alignment explanation
Indices: 47765561--47765643 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
47765551 TTACCGAGAG
47765561 GTGATTACATGTAAGACCATGTAT-GGTACATTGGCATTGTATT
1 GTGATTACATGTAAGACCATGTATAGG-ACATTGGCATTGTATT
* * * *
47765604 GTGATTACGTGTAAGACCGTGTCTAGGACATTGGTATTGT
1 GTGATTACATGTAAGACCATGTATAGGACATTGGCATTGT
47765644 TATATGATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.94
44 2 0.06
ACGTcount: A:0.25, C:0.12, G:0.27, T:0.36
Consensus pattern (43 bp):
GTGATTACATGTAAGACCATGTATAGGACATTGGCATTGTATT
Found at i:47772557 original size:55 final size:55
Alignment explanation
Indices: 47772488--47772608 Score: 145
Period size: 55 Copynumber: 2.2 Consensus size: 55
47772478 ATGTAGTCCT
* * *
47772488 ACGCCCGTGGTAATTTAACAGGTTTGACCATGGTTAC-TTGGCACGGGCGTGTCAC
1 ACGCCCGTGTTAATTTAACAGGTTTGACCACGGTTACAAT-GCACGGGCGTGTCAC
* * * * *
47772543 ACGCCCGTGTTAATTTGACAGGTTTGGCCACGGTTTCAATGTACGGGCGTGTCGC
1 ACGCCCGTGTTAATTTAACAGGTTTGACCACGGTTACAATGCACGGGCGTGTCAC
*
47772598 ACGCCCATGTT
1 ACGCCCGTGTT
47772609 GTTTTGGTAG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
55 55 0.98
56 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.29, T:0.28
Consensus pattern (55 bp):
ACGCCCGTGTTAATTTAACAGGTTTGACCACGGTTACAATGCACGGGCGTGTCAC
Found at i:47775986 original size:31 final size:31
Alignment explanation
Indices: 47775951--47776014 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
47775941 CCTTTTCATA
*
47775951 TTTCATATTCCATAATGCTGGGCCGAAGCCT
1 TTTCATATTCCATAATACTGGGCCGAAGCCT
* *
47775982 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTCCATAATACTGGGCCGAAGCCT
47776013 TT
1 TT
47776015 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (31 bp):
TTTCATATTCCATAATACTGGGCCGAAGCCT
Found at i:47776257 original size:24 final size:24
Alignment explanation
Indices: 47776206--47776372 Score: 257
Period size: 24 Copynumber: 7.0 Consensus size: 24
47776196 GCTTTATCAT
*
47776206 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
47776231 ATAACTGGGGCAAAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTA
47776255 ATAACTGGGGCATAAGCCCTTTT-
1 ATAACTGGGGCATAAGCCCTTTTA
*
47776278 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
*
47776302 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
47776326 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
47776350 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
47776373 TCACTTCCTC
Statistics
Matches: 134, Mismatches: 6, Indels: 5
0.92 0.04 0.03
Matches are distributed among these distances:
23 23 0.17
24 99 0.74
25 12 0.09
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:47776306 original size:71 final size:71
Alignment explanation
Indices: 47776205--47776372 Score: 257
Period size: 71 Copynumber: 2.3 Consensus size: 71
47776195 TGCTTTATCA
*
47776205 TATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
1 TATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATA
47776269 AGCCCTTT
64 AGCCCTTT
* * **
47776277 TATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAG
1 TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
47776342 CCCTTT
66 CCCTTT
47776348 TAATAACTGGGGCATAAGCCCTTTT
1 T-ATAACTGGGGCATAAGCCCTTTT
47776373 TCACTTCCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
71 53 0.60
72 36 0.40
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (71 bp):
TATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCAAAAGCCCTTTCAATAACTGGGGCATAAG
CCCTTT
Found at i:47776443 original size:9 final size:9
Alignment explanation
Indices: 47776429--47776501 Score: 56
Period size: 9 Copynumber: 7.4 Consensus size: 9
47776419 ACATCATGTT
47776429 CATATCATA
1 CATATCATA
*
47776438 CATATCATGTG
1 CATATCA--TA
47776449 CATATCATA
1 CATATCATA
* *
47776458 CATGTCATGTG
1 CATATCA--TA
47776469 CATATCATA
1 CATATCATA
*
47776478 CATATCATGTG
1 CATATCA--TA
47776489 CATATCATA
1 CATATCATA
47776498 CATA
1 CATA
47776502 AACCCTAGGG
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 27 0.54
11 23 0.46
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.34
Consensus pattern (9 bp):
CATATCATA
Found at i:47776446 original size:20 final size:20
Alignment explanation
Indices: 47776421--47776501 Score: 144
Period size: 20 Copynumber: 4.0 Consensus size: 20
47776411 TTATGATTAC
*
47776421 ATCATGTTCATATCATACAT
1 ATCATGTGCATATCATACAT
47776441 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
47776461 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
47776481 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
47776501 A
1 A
47776502 AACCCTAGGG
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 58 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:47776452 original size:11 final size:11
Alignment explanation
Indices: 47776421--47776496 Score: 65
Period size: 11 Copynumber: 7.5 Consensus size: 11
47776411 TTATGATTAC
*
47776421 ATCATGTTCAT
1 ATCATGTACAT
47776432 ATCA--TACAT
1 ATCATGTACAT
*
47776441 ATCATGTGCAT
1 ATCATGTACAT
47776452 ATCA--TACAT
1 ATCATGTACAT
* *
47776461 GTCATGTGCAT
1 ATCATGTACAT
47776472 ATCA--TACAT
1 ATCATGTACAT
*
47776481 ATCATGTGCAT
1 ATCATGTACAT
47776492 ATCAT
1 ATCAT
47776497 ACATAAACCC
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
9 23 0.45
11 28 0.55
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (11 bp):
ATCATGTACAT
Found at i:47786904 original size:37 final size:36
Alignment explanation
Indices: 47786854--47786940 Score: 147
Period size: 37 Copynumber: 2.3 Consensus size: 36
47786844 TACGAAGTCT
47786854 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
47786890 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
47786927 TCACCCGGAACATA
1 T-ACCCGG-ACATA
47786941 TTTCCAAGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
36 1 0.02
37 42 0.88
38 5 0.10
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:47787078 original size:49 final size:49
Alignment explanation
Indices: 47787009--47787369 Score: 569
Period size: 49 Copynumber: 7.4 Consensus size: 49
47786999 TTTACCACAT
*
47787009 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47787058 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
47787107 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
47787156 ATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
47787205 ATATACATATACTTTCCCATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * *
47787254 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
47787303 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* *
47787352 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
47787370 GAATCTTGAT
Statistics
Matches: 297, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 297 1.00
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:47791416 original size:118 final size:118
Alignment explanation
Indices: 47791206--47791427 Score: 365
Period size: 118 Copynumber: 1.9 Consensus size: 118
47791196 CCAGCATGAT
* * *
47791206 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA
1 TGCTCCTCGGAACCTAGCCCGGATACATCACTAGCACGAATGC-CTTCGGAACTTAGTCCGGATA
47791271 CATCACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
65 CATCACTAGCACGAATGCTCCTCGGAACTTAG-CCGGATACATCACTAGCACGAA
* *
47791326 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATG-CTTCGGAACTTAGTCCGGATAC
1 TGCTCCTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCCTTCGGAACTTAGTCCGGATAC
*
47791390 ATCACTAGCACGAATGCTCTTCGGAACTTAGCCGGATA
66 ATCACTAGCACGAATGCTCCTCGGAACTTAGCCGGATA
47791428 TAACCACAAG
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
117 7 0.07
118 52 0.54
120 37 0.39
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (118 bp):
TGCTCCTCGGAACCTAGCCCGGATACATCACTAGCACGAATGCCTTCGGAACTTAGTCCGGATAC
ATCACTAGCACGAATGCTCCTCGGAACTTAGCCGGATACATCACTAGCACGAA
Found at i:47791440 original size:40 final size:40
Alignment explanation
Indices: 47791206--47791427 Score: 369
Period size: 40 Copynumber: 5.6 Consensus size: 40
47791196 CCAGCATGAT
* * * *
47791206 TGCTCTTCGGGACCTAGCCCGGATGCATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47791246 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
47791286 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
*
47791326 TGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47791366 TG--CTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
47791404 TGCTCTTCGGAACTTAG-CCGGATA
1 TGCTCTTCGGAACTTAGTCCGGATA
47791428 TAACCACAAG
Statistics
Matches: 174, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
38 37 0.21
39 7 0.04
40 130 0.75
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
Found at i:47791470 original size:40 final size:40
Alignment explanation
Indices: 47791396--47791544 Score: 149
Period size: 40 Copynumber: 3.7 Consensus size: 40
47791386 ATACATCACT
* **
47791396 AGCACGAATGCTCTTCGGAACTTAG-CCGGATATAACCACA
1 AGCACAAATGC-CTTCGGGTCTTAGCCCGGATATAACCACA
* * * * *
47791436 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAACAACTC
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCAC-A
** *
47791477 A-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
* *
47791516 AGCATAAATGCCTTCGGGACTTAGCCCGG
1 AGCACAAATGCCTTCGGGTCTTAGCCCGG
47791545 GTATCATTCA
Statistics
Matches: 89, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
39 11 0.12
40 77 0.87
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACCACA
Found at i:47791486 original size:118 final size:118
Alignment explanation
Indices: 47791223--47791541 Score: 333
Period size: 118 Copynumber: 2.7 Consensus size: 118
47791213 CGGGACCTAG
* * *
47791223 CCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CCCGGATACAACACTAGCACAAATGC-CTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * * * *
47791288 CTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACTTAG
65 CTCTTCGGAACTTAG-CCGGATAAACCACAAGCACGAATGCTCCTCGGAACTTAA
* * *
47791343 TCCGGATACATCACTAGCACGAATG-CTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
1 CCCGGATACAACACTAGCACAAATGCCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
* **
47791407 TCTTCGGAACTTAGCCGGATATAACCACAAGCAC-AATTGC-CTTCGGGTCTTAA
66 TCTTCGGAACTTAGCCGGATA-AACCACAAGCACGAA-TGCTCCTCGGAACTTAA
* * ** * * **
47791460 CCCGGGTATAACAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATATATTCACTAGCATAAA
1 CCCGGATACAAC-ACT-AGCACAAATGCCTTCGGAACTTAGTCCGGATACA-TCACTAGCACGAA
*
47791524 TGC-CTTCGGGACTTAGCC
63 TGCTCTTCGGAACTTAGCC
47791542 CGGGTATCAT
Statistics
Matches: 171, Mismatches: 22, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
117 26 0.15
118 74 0.43
119 34 0.20
120 37 0.22
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.24
Consensus pattern (118 bp):
CCCGGATACAACACTAGCACAAATGCCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGC
TCTTCGGAACTTAGCCGGATAAACCACAAGCACGAATGCTCCTCGGAACTTAA
Found at i:47791515 original size:158 final size:159
Alignment explanation
Indices: 47791210--47791544 Score: 376
Period size: 158 Copynumber: 2.1 Consensus size: 159
47791200 CATGATTGCT
* * * *
47791210 CTTCGGGACCTAGCCCGGATGCATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATC
1 CTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAAACC
* ** * *
47791275 ACTAGCACGAATGCTCCTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCCTCGGAACT
66 ACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACAACACTAGCACAAATGCTCCTCGGAACT
* *
47791340 TAGTCCGGATACATCACTAGCACGAATG-
131 TAGCCCGGATACATCACTAGCACAAATGC
* *
47791368 CTTCGGAACTTAGTCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAG-CCGGATATAAC
1 CTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATA-AAC
* ** * * *
47791432 CACAAGCAC-AATTGC-CTTCGGGTCTTAACCCGGGTATAACAACTCA-CACAAATGC-CTTCGG
65 CACAAGCACGAA-TGCTCCTCGGAACTTAACCCGGATACAAC-ACT-AGCACAAATGCTCCTCGG
** * *
47791493 GTCTTAGCCCGGATATATTCACTAGCATAAATGC
127 AACTTAGCCCGGATACA-TCACTAGCACAAATGC
47791527 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
47791545 GTATCATTCA
Statistics
Matches: 146, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
157 44 0.30
158 85 0.58
159 17 0.12
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (159 bp):
CTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATAAACC
ACAAGCACGAATGCTCCTCGGAACTTAACCCGGATACAACACTAGCACAAATGCTCCTCGGAACT
TAGCCCGGATACATCACTAGCACAAATGC
Found at i:47793452 original size:36 final size:36
Alignment explanation
Indices: 47793405--47793490 Score: 138
Period size: 36 Copynumber: 2.3 Consensus size: 36
47793395 TACGAAGTCT
47793405 TACCCGGACATAATCTCCACACGTAGTCATC-GGTC
1 TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
47793440 GTACCCGGACATAATCTCCACACGTAGTCATCGGGTC
1 -TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
47793477 TCACCCGGAACATA
1 T-ACCCGG-ACATA
47793491 TTTCCAAGTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
36 32 0.68
37 10 0.21
38 5 0.11
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (36 bp):
TACCCGGACATAATCTCCACACGTAGTCATCGGGTC
Found at i:47793628 original size:49 final size:49
Alignment explanation
Indices: 47793559--47793918 Score: 569
Period size: 49 Copynumber: 7.4 Consensus size: 49
47793549 TTTACCACAT
* *
47793559 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
47793608 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
*
47793657 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
*
47793706 ATATACATATACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
*
47793755 ATATACATATACTTTC-CATTCACCACATCGGCCATTAGGCCTTATCAC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
* * * * *
47793803 ATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
* * * *
47793852 ATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTCATCAC
1 ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
* *
47793901 ATATATATACATTTTCAC
1 ATATACATACACTTTCAC
47793919 GAATCTTGAT
Statistics
Matches: 299, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
48 46 0.15
49 253 0.85
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
ATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCAC
Found at i:47793870 original size:195 final size:197
Alignment explanation
Indices: 47793539--47793905 Score: 576
Period size: 195 Copynumber: 1.9 Consensus size: 197
47793529 ATTCACATTA
* * * *
47793539 GCCATTCGGCTTTACCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 GCCATTAGGCCTTACCACATATACATATA-ACTTTCACATTCACCACATCGGCCATTAGGCCTTA
* *
47793604 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATAC
65 TCACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACAC
*
47793669 TTTCACATTCACCACATCGGCCATTAGGCCTTATCACATATACATATACTTTCACATTCACCACA
130 TTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATATACTTTCACATTCACCACA
47793734 TCG
195 TCG
*
47793737 GCCATTAGGCCTTATCACATATACATAT-ACTTTC-CATTCACCACATCGGCCATTAGGCCTTAT
1 GCCATTAGGCCTTACCACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
* * * * * *
47793800 CACATATACATACATTTTCGCATTCATCGCATCGGCCATTAGGCCTCATCACATATATATACATT
66 CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
*
47793865 TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATA
131 TTCACATTCACCACATCGGCCATTAGGCCTCATCACATATA
47793906 TATACATTTT
Statistics
Matches: 154, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
195 124 0.81
196 6 0.04
198 24 0.16
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (197 bp):
GCCATTAGGCCTTACCACATATACATATAACTTTCACATTCACCACATCGGCCATTAGGCCTTAT
CACATATACATACACTTTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATACACT
TTCACATTCACCACATCGGCCATTAGGCCTCATCACATATACATATACTTTCACATTCACCACAT
CG
Found at i:47802544 original size:40 final size:40
Alignment explanation
Indices: 47802417--47802546 Score: 165
Period size: 40 Copynumber: 3.2 Consensus size: 40
47802407 ATGCTGGAAA
* * *
47802417 TTATATCCGGGTTAAGACTCGAAGGCAATT-GTGCTAGTGG
1 TTATATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTGG
* * *
47802457 CTACATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTCG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
*
47802497 TTCTATCCGGGCTAAGACCCGAAGGCATTCGTGC-ACGTGG
1 TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGA-GTGG
47802537 TTATATCCGG
1 TTATATCCGG
47802547 TTGTATTCCG
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 4 0.05
40 73 0.95
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.25
Consensus pattern (40 bp):
TTATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTGG
Found at i:47807913 original size:78 final size:78
Alignment explanation
Indices: 47807824--47808005 Score: 267
Period size: 78 Copynumber: 2.3 Consensus size: 78
47807814 AATGTTCGAG
47807824 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAG-CCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
47807888 AATTGTGCGAGTTA
66 -ATTGTGCGAGTTA
* *
47807902 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATATCCGGGTTAAGTCCCGAAGGC
1 TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
* *
47807967 TTTGTGCGGGTTA
66 ATTGTGCGAGTTA
** * *
47807980 CCATAACCGGGCTATGTCCCGAAGGC
1 TGATATCCGGGCTAAG-CCCGAAGGC
47808006 GTTTGAACGA
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
78 76 0.81
79 18 0.19
ACGTcount: A:0.25, C:0.23, G:0.30, T:0.23
Consensus pattern (78 bp):
TGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATTGTGATACCCGGGCTAAGTCCCGAAGGC
ATTGTGCGAGTTA
Found at i:47807973 original size:39 final size:39
Alignment explanation
Indices: 47807823--47807966 Score: 234
Period size: 39 Copynumber: 3.7 Consensus size: 39
47807813 GAATGTTCGA
47807823 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
* * *
47807862 GTGATACCCGGGCTAAGCCCGAAGGCAATTGTGCGAGTT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
47807901 ATGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
1 GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
*
47807940 GTGATATCCGGGTTAAGTCCCGAAGGC
1 GTGATATCCGGGCTAAG-CCCGAAGGC
47807967 TTTGTGCGGG
Statistics
Matches: 95, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 86 0.91
40 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (39 bp):
GTGATATCCGGGCTAAGCCCGAAGGCAATTGTGCAAATT
Found at i:47809800 original size:27 final size:27
Alignment explanation
Indices: 47809766--47809819 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
47809756 ATTAATATGG
47809766 CTTAAATTTAATTTGTGCTAGGTTGAT
1 CTTAAATTTAATTTGTGCTAGGTTGAT
*
47809793 CTTAAATTTAATTTGTGTTAGGTTGAT
1 CTTAAATTTAATTTGTGCTAGGTTGAT
47809820 TGCATTGTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.50
Consensus pattern (27 bp):
CTTAAATTTAATTTGTGCTAGGTTGAT
Found at i:47823199 original size:20 final size:20
Alignment explanation
Indices: 47823174--47823212 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
47823164 AATTGAAGGC
47823174 ACATGGCCAGGTCACACGCG
1 ACATGGCCAGGTCACACGCG
47823194 ACATGGCCAGGTCACACGC
1 ACATGGCCAGGTCACACGC
47823213 CTGTGTCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.36, G:0.28, T:0.10
Consensus pattern (20 bp):
ACATGGCCAGGTCACACGCG
Found at i:47827619 original size:46 final size:46
Alignment explanation
Indices: 47827539--47827706 Score: 149
Period size: 47 Copynumber: 3.6 Consensus size: 46
47827529 AAGTCAATGC
* **
47827539 CATGTCCCAGACACGGTCTTACACT-GACTATCATCTTGAGGCCGATG
1 CATGTCCCAGACA-TGTCTTACACTAG-CCCTCATCTTGAGGCCGATG
* * ** * *
47827586 CACGTCCCAGACATGTATTACACTAGCCCTCATCTCAATGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCCCTCATCTTGAGGCCGATG
* * * ** *
47827632 CCATGTCCCAAACATGATCTTACACTGGCTCTCATAATGTGGCCGATG
1 -CATGTCCCAGACATG-TCTTACACTAGCCCTCATCTTGAGGCCGATG
*
47827680 CATGTCCCAGGCATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
47827707 TCACATTAAC
Statistics
Matches: 94, Mismatches: 24, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
46 34 0.36
47 39 0.41
48 21 0.22
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCCCTCATCTTGAGGCCGATG
Found at i:47827676 original size:94 final size:94
Alignment explanation
Indices: 47827533--47827706 Score: 249
Period size: 94 Copynumber: 1.9 Consensus size: 94
47827523 TATTCCAAGT
* * **
47827533 CAATGCCATGTCCCAGACACGGTCTTACACTGACTATCATCTTGAGGCCGATGCACGTCCCAGAC
1 CAATGCCATGTCCCAAACACGATCTTACACTGACTATCATAATGAGGCCGATGCACGTCCCAGAC
47827598 ATGTATTACACTAGCCCTCATCTCAATGC
66 ATGTATTACACTAGCCCTCATCTCAATGC
* * * * * *
47827627 CAATGCCATGTCCCAAACATGATCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGGC
1 CAATGCCATGTCCCAAACACGATCTTACACTGACTATCATAATGAGGCCGATGCACGTCCCAGAC
*
47827692 ATGTCTTACACTAGC
66 ATGTATTACACTAGC
47827707 TCACATTAAC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 69 1.00
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (94 bp):
CAATGCCATGTCCCAAACACGATCTTACACTGACTATCATAATGAGGCCGATGCACGTCCCAGAC
ATGTATTACACTAGCCCTCATCTCAATGC
Found at i:47834175 original size:28 final size:29
Alignment explanation
Indices: 47834121--47834178 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
47834111 TACAGGAGTT
47834121 TTCACACGGCCTGGCACACGCCCGTGTCC
1 TTCACACGGCCTGGCACACGCCCGTGTCC
*
47834150 TTCACACGGCCAT-G-ACACGCCTGTGTCC
1 TTCACACGGCC-TGGCACACGCCCGTGTCC
47834178 T
1 T
47834179 AGCTTGTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 14 0.52
29 12 0.44
30 1 0.04
ACGTcount: A:0.16, C:0.41, G:0.22, T:0.21
Consensus pattern (29 bp):
TTCACACGGCCTGGCACACGCCCGTGTCC
Found at i:47837840 original size:33 final size:36
Alignment explanation
Indices: 47837793--47837859 Score: 95
Period size: 34 Copynumber: 1.9 Consensus size: 36
47837783 ATTCTGTAAT
*
47837793 TAGGGTAATACTG-AAACTGTAGAA-ACTGAGACAG
1 TAGGGTAAAACTGAAAACTGTAGAAGACTGAGACAG
*
47837827 TAGGG-AAAACTGAAAACTTTAGAAGACTGAGAC
1 TAGGGTAAAACTGAAAACTGTAGAAGACTGAGAC
47837860 TATAGCTAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 6 0.21
34 15 0.52
35 8 0.28
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.19
Consensus pattern (36 bp):
TAGGGTAAAACTGAAAACTGTAGAAGACTGAGACAG
Found at i:47842233 original size:28 final size:28
Alignment explanation
Indices: 47842201--47842299 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
47842191 GCCATAAGCC
*
47842201 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
47842229 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
47842257 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
47842286 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47842300 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:47849896 original size:28 final size:28
Alignment explanation
Indices: 47849864--47849962 Score: 112
Period size: 28 Copynumber: 3.5 Consensus size: 28
47849854 TGCATAAGCC
*
47849864 CGCACACTTAGTGCTTAATAGTCGAACT
1 CGCACACTTAGTGCTTAATAATCGAACT
*
47849892 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTA-ATAATCGAACT
* * *
47849920 TGCACACTTAGTGCTGT-ATAATTTGAACC
1 CGCACACTTAGTGCT-TAATAA-TCGAACT
47849949 CGCACACTTAGTGC
1 CGCACACTTAGTGC
47849963 CAATTTGTGA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
27 2 0.03
28 40 0.67
29 17 0.28
30 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTTAATAATCGAACT
Found at i:47852196 original size:27 final size:27
Alignment explanation
Indices: 47852158--47852246 Score: 108
Period size: 27 Copynumber: 3.2 Consensus size: 27
47852148 GTGACAGAGT
47852158 CACCAGATACAGATATTTGTGGCAGTGC
1 CACCAGA-ACAGATATTTGTGGCAGTGC
* *
47852186 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
* *
47852213 CACCAAAATAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
47852241 CACCAG
1 CACCAG
47852247 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 29 0.56
28 23 0.44
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:47852205 original size:55 final size:55
Alignment explanation
Indices: 47852133--47852246 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 55
47852123 AGCATGGCTG
* *
47852133 CCAGATACAGAAAATGTGACAGAGTCACCAGATACAGAT-ATTTGTGGCAGT-GCCA
1 CCAGATACAGAAAATGTGACAGAGCCACCA-AAACAGATAATTTGTGGCA-TAGCCA
* * * *
47852188 CCAGA-ACAGATATATGTGGCAGGGCCACCAAAATAGATAATTTGTGGCATAGCCA
1 CCAGATACAGA-AAATGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
47852243 CCAG
1 CCAG
47852247 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
54 12 0.24
55 38 0.76
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.19
Consensus pattern (55 bp):
CCAGATACAGAAAATGTGACAGAGCCACCAAAACAGATAATTTGTGGCATAGCCA
Found at i:47855264 original size:47 final size:47
Alignment explanation
Indices: 47855193--47855481 Score: 191
Period size: 47 Copynumber: 6.1 Consensus size: 47
47855183 GACTAGTTCT
* *
47855193 AGACATGGTCTTACACTGGTTCATATCCCAAGCCGATGCCATGTCCT
1 AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGTCCC
* * *
47855240 AGACATGGTCTTACAATGGCTCATATCCTAAGTCGATGCCATGTCCCCC
1 AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGT--CCC
* **
47855289 AGACATGGTCTTACACTGACT-ATCATCTCGTAGCCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCAT-ATC-CCAAGCCGATGCCATGTCCC
* * ** * * *
47855336 AAACAT-GTCTTACACTGGCTTACGTCTCGAGGTCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCATATC-CCAAGCCGATGCCATGTCCC
* * * * * * * *
47855382 AAACAT-TTCTTACACTAGAACTCGTCT-CGATGTCGATGCCATGT-CC
1 AGACATGGTCTTACACT-G-GCTCATATCCCAAGCCGATGCCATGTCCC
* **
47855428 AGACATGGTCTTACACTGACT-ATCATCTCGTAGCCGATG-CATGTCCC
1 AGACATGGTCTTACACTGGCTCAT-ATC-CCAAGCCGATGCCATGTCCC
*
47855475 AAACATG
1 AGACATG
47855482 TCCCAAACAN
Statistics
Matches: 197, Mismatches: 32, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
44 1 0.01
45 4 0.02
46 70 0.36
47 80 0.41
48 5 0.03
49 29 0.15
50 8 0.04
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
AGACATGGTCTTACACTGGCTCATATCCCAAGCCGATGCCATGTCCC
Found at i:47855352 original size:46 final size:46
Alignment explanation
Indices: 47855286--47855483 Score: 201
Period size: 46 Copynumber: 4.3 Consensus size: 46
47855276 TGCCATGTCC
*
47855286 CCCAGACATGGTCTTACACTGACTATCATCTCGTA-GCCGATGCATGT
1 CCCAAACAT-GTCTTACACTGACTATCATCTCG-AGGCCGATGCATGT
* * *
47855333 CCCAAACATGTCTTACACTGGCT-TACGTCTCGAGGTCGATGCATGT
1 CCCAAACATGTCTTACACTGACTAT-CATCTCGAGGCCGATGCATGT
* * * *
47855379 CCCAAACATTTCTTACACTAGA--ACTCGTCTCGATGTCGATGCCATGT
1 CCCAAACATGTCTTACACT-GACTA-TCATCTCGAGGCCGATG-CATGT
*
47855426 -CCAGACATGGTCTTACACTGACTATCATCTCGTA-GCCGATGCATGT
1 CCCAAACAT-GTCTTACACTGACTATCATCTCG-AGGCCGATGCATGT
47855472 CCCAAACATGTC
1 CCCAAACATGTC
47855484 CCAAACANAC
Statistics
Matches: 128, Mismatches: 12, Indels: 23
0.79 0.07 0.14
Matches are distributed among these distances:
45 2 0.02
46 80 0.62
47 44 0.34
48 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
CCCAAACATGTCTTACACTGACTATCATCTCGAGGCCGATGCATGT
Found at i:47855371 original size:96 final size:95
Alignment explanation
Indices: 47855193--47855381 Score: 213
Period size: 96 Copynumber: 2.0 Consensus size: 95
47855183 GACTAGTTCT
* * *
47855193 AGACATGGTCTTACACTGGTTCATATCCCAAGCCGATGCCATGTCCTAGACATGGTCTTACAATG
1 AGACATGGTCTTACACTGCTTCATATCCCAAGCCGATGCCATGTCCCAAACATGGTCTTACAATG
* *
47855258 GCTCATATCCTAAGTCGATGCCATGTCCCCC
66 GCTCACATCCGAAGTCGATG-CATGTCCCCC
* ** *
47855289 AGACATGGTCTTACACTGACTATCATCT-CGTAGCCGATG-CATGTCCCAAACAT-GTCTTACAC
1 AGACATGGTCTTACACTG-CT-TCATATCCCAAGCCGATGCCATGTCCCAAACATGGTCTTACAA
* * *
47855351 TGGCTTACGTCTCGAGGTCGATGCATGTCCC
64 TGGCTCACATC-CGAAGTCGATGCATGTCCC
47855382 AAACATTTCT
Statistics
Matches: 78, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
95 24 0.31
96 39 0.50
97 10 0.13
98 5 0.06
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.28
Consensus pattern (95 bp):
AGACATGGTCTTACACTGCTTCATATCCCAAGCCGATGCCATGTCCCAAACATGGTCTTACAATG
GCTCACATCCGAAGTCGATGCATGTCCCCC
Found at i:47860951 original size:40 final size:40
Alignment explanation
Indices: 47860885--47861051 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
47860875 AAATTGAATG
* * *
47860885 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * ***
47860924 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGCT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
*
47860964 ATATCCGGGCTAAGACCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
47861004 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
47861044 ATATCCGG
1 ATATCCGG
47861052 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:47862916 original size:12 final size:12
Alignment explanation
Indices: 47862901--47862933 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
47862891 TTTTCACTTC
47862901 AATTTTTTTTCG
1 AATTTTTTTTCG
*
47862913 AATTTTCTTTCG
1 AATTTTTTTTCG
47862925 AATTTTTTT
1 AATTTTTTT
47862934 AACTTGTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.06, T:0.67
Consensus pattern (12 bp):
AATTTTTTTTCG
Found at i:47866797 original size:18 final size:19
Alignment explanation
Indices: 47866774--47866812 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
47866764 TTTATCTCAA
*
47866774 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
47866792 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
47866811 TT
1 TT
47866813 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:47866842 original size:29 final size:29
Alignment explanation
Indices: 47866803--47866870 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 29
47866793 TTCTTGTTCA
**
47866803 CATTCT-TTTTCTCTCTCAAACTCTTTTT
1 CATTCTCTTTTCAATCTCAAACTCTTTTT
***
47866831 CATTCTCTTTTCAATCTCATTTTCTTTTT
1 CATTCTCTTTTCAATCTCAAACTCTTTTT
*
47866860 CATTTTCTTTT
1 CATTCTCTTTT
47866871 TGTTTTTCAA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.18
29 27 0.82
ACGTcount: A:0.13, C:0.25, G:0.00, T:0.62
Consensus pattern (29 bp):
CATTCTCTTTTCAATCTCAAACTCTTTTT
Found at i:47866861 original size:18 final size:18
Alignment explanation
Indices: 47866833--47866880 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
47866823 CTCTTTTTCA
47866833 TTCTCTTTTCAATCTCATT
1 TTCT-TTTTCAATCTCATT
* * *
47866852 TTCTTTTTCATTTTCTTT
1 TTCTTTTTCAATCTCATT
*
47866870 TTGTTTTTCAA
1 TTCTTTTTCAA
47866881 AGGCTTTTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 20 0.83
19 4 0.17
ACGTcount: A:0.12, C:0.19, G:0.02, T:0.67
Consensus pattern (18 bp):
TTCTTTTTCAATCTCATT
Found at i:47866878 original size:12 final size:12
Alignment explanation
Indices: 47866847--47866871 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47866837 CTTTTCAATC
47866847 TCATTTTCTTTT
1 TCATTTTCTTTT
47866859 TCATTTTCTTTT
1 TCATTTTCTTTT
47866871 T
1 T
47866872 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:47866889 original size:13 final size:12
Alignment explanation
Indices: 47866873--47866904 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
47866863 TTTCTTTTTG
47866873 TTTTTCAAAGGC
1 TTTTTCAAAGGC
47866885 TTTTTCAAAGGC
1 TTTTTCAAAGGC
47866897 TTTTTCAA
1 TTTTTCAA
47866905 GTTCTCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (12 bp):
TTTTTCAAAGGC
Found at i:47867940 original size:11 final size:11
Alignment explanation
Indices: 47867924--47867965 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
47867914 TTTTCACTTC
*
47867924 AATTTTTTTCT
1 AATTTTTTTCG
*
47867935 AATTTTTTTAG
1 AATTTTTTTCG
47867946 AATTTTTTTCG
1 AATTTTTTTCG
47867957 AATTTTTTT
1 AATTTTTTT
47867966 AACTTGTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (11 bp):
AATTTTTTTCG
Found at i:47867949 original size:22 final size:22
Alignment explanation
Indices: 47867924--47867966 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
47867914 TTTTCACTTC
*
47867924 AATTTTTTTCTAATTTTTTTAG
1 AATTTTTTTCGAATTTTTTTAG
47867946 AATTTTTTTCGAATTTTTTTA
1 AATTTTTTTCGAATTTTTTTA
47867967 ACTTGTATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.67
Consensus pattern (22 bp):
AATTTTTTTCGAATTTTTTTAG
Found at i:47870343 original size:6 final size:6
Alignment explanation
Indices: 47870323--47870387 Score: 62
Period size: 6 Copynumber: 10.7 Consensus size: 6
47870313 AAGAAACATT
* *
47870323 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
*
47870372 ATCAGA ACCAGA ATCA
1 ATCAGA ATCAGA ATCA
47870388 ATTTCAGTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
5 2 0.04
6 41 0.85
7 4 0.08
8 1 0.02
ACGTcount: A:0.49, C:0.18, G:0.17, T:0.15
Consensus pattern (6 bp):
ATCAGA
Found at i:47870377 original size:31 final size:31
Alignment explanation
Indices: 47870340--47870432 Score: 98
Period size: 31 Copynumber: 3.0 Consensus size: 31
47870330 CTAGAATCAA
*
47870340 AATCAGAATCAGAATCAGAATCAGGTGACAG
1 AATCAGAATCAGAATCAGAATCAGGTAACAG
* * *
47870371 AATCAGAACCAGAATCA-ATTTCAGTTAACAG
1 AATCAGAATCAGAATCAGA-ATCAGGTAACAG
* * *
47870402 AATAAAAAATCAGAATCAGTATCAGGTAACA
1 AAT-CAGAATCAGAATCAGAATCAGGTAACA
47870433 AAATAAAAAA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
30 1 0.02
31 28 0.57
32 20 0.41
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGAATCAGAATCAGGTAACAG
Found at i:47870418 original size:32 final size:32
Alignment explanation
Indices: 47870346--47870449 Score: 104
Period size: 32 Copynumber: 3.3 Consensus size: 32
47870336 TCAAAATCAG
* * * *
47870346 AATCAGAATCAGA-ATCAGGTGACAGAAT-CAG
1 AATCAGAATCA-ATATCAGGTAACAAAATAAAA
* * * *
47870377 AACCAGAATCAATTTCAGTTAACAGAATAAAA
1 AATCAGAATCAATATCAGGTAACAAAATAAAA
*
47870409 AATCAGAATCAGTATCAGGTAACAAAATAAAA
1 AATCAGAATCAATATCAGGTAACAAAATAAAA
47870441 AATCAGAAT
1 AATCAGAAT
47870450 GTGAATGCAA
Statistics
Matches: 60, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
30 1 0.02
31 22 0.37
32 37 0.62
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.19
Consensus pattern (32 bp):
AATCAGAATCAATATCAGGTAACAAAATAAAA
Found at i:47870614 original size:27 final size:26
Alignment explanation
Indices: 47870584--47870660 Score: 82
Period size: 27 Copynumber: 2.9 Consensus size: 26
47870574 CAGTTATCAG
*
47870584 ATATTGTGACAGAGTCACCAGATACAA
1 ATATTGTGACAGAGCCACCAGA-ACAA
* *
47870611 ATATTGTGGCAGAGCCACCAGAACAG
1 ATATTGTGACAGAGCCACCAGAACAA
* * *
47870637 ATATTTGTGGCATAGCCACTAGAA
1 ATA-TTGTGACAGAGCCACCAGAA
47870661 ACAGATAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 6 0.14
27 38 0.86
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22
Consensus pattern (26 bp):
ATATTGTGACAGAGCCACCAGAACAA
Found at i:47870672 original size:27 final size:27
Alignment explanation
Indices: 47870611--47870683 Score: 87
Period size: 27 Copynumber: 2.7 Consensus size: 27
47870601 CCAGATACAA
* *
47870611 ATAT-TGTGGCAGAGCCACCAGAACAG
1 ATATATGTGGCAAAGCCACTAGAACAG
* *
47870637 ATATTTGTGGCATAGCCACTAGAAACAG
1 ATATATGTGGCAAAGCCACTAG-AACAG
47870665 ATA-ATGTGGCAAAGCCACT
1 ATATATGTGGCAAAGCCACT
47870684 TAACATAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 4 0.10
27 29 0.71
28 8 0.20
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (27 bp):
ATATATGTGGCAAAGCCACTAGAACAG
Found at i:47870869 original size:22 final size:22
Alignment explanation
Indices: 47870841--47870905 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
47870831 GCAAATACGT
*
47870841 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
47870863 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
47870885 TTGACACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
47870906 AAGGCTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:47871418 original size:20 final size:18
Alignment explanation
Indices: 47871393--47871485 Score: 78
Period size: 20 Copynumber: 4.6 Consensus size: 18
47871383 AGTATTTCCC
47871393 TACAGGGGATAATTCTACT
1 TACAGGGG-TAATTCTACT
*
47871412 ATACAGGGGTATTTTAATTCTACCC
1 -TACAGGGG-----TAATTCTA-CT
47871437 TACAGGGGTAAATTCTACTT
1 TACAGGGGT-AATTCTAC-T
47871457 TACAGGGGTAATTCTACCT
1 TACAGGGGTAATTCTA-CT
47871476 TACAGGGGTA
1 TACAGGGGTA
47871486 TTTTAGTAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 17
0.76 0.04 0.21
Matches are distributed among these distances:
19 20 0.32
20 25 0.40
24 16 0.26
25 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (18 bp):
TACAGGGGTAATTCTACT
Found at i:47871463 original size:44 final size:43
Alignment explanation
Indices: 47871358--47871466 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 43
47871348 GGTATCTCAG
* **
47871358 TAATTCTACCTTACAGTAGTATTTTAGTATTTCCCTACAGGGGA
1 TAATTCTACTTTACAGGGGTATTTTAG-ATTTCCCTACAGGGGA
*
47871402 TAATTCTACTATACAGGGGTATTTTA-ATTCTACCCTACAGGGG-
1 TAATTCTACTTTACAGGGGTATTTTAGATT-T-CCCTACAGGGGA
47871445 TAAATTCTACTTTACAGGGGTA
1 T-AATTCTACTTTACAGGGGTA
47871467 ATTCTACCTT
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
42 3 0.05
43 2 0.04
44 52 0.91
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (43 bp):
TAATTCTACTTTACAGGGGTATTTTAGATTTCCCTACAGGGGA
Found at i:47871471 original size:19 final size:19
Alignment explanation
Indices: 47871426--47871485 Score: 93
Period size: 19 Copynumber: 3.1 Consensus size: 19
47871416 AGGGGTATTT
*
47871426 TAATTCTACCCTACAGGGG
1 TAATTCTACCTTACAGGGG
*
47871445 TAAATTCTACTTTACAGGGG
1 T-AATTCTACCTTACAGGGG
47871465 TAATTCTACCTTACAGGGG
1 TAATTCTACCTTACAGGGG
47871484 TA
1 TA
47871486 TTTTAGTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
19 20 0.54
20 17 0.46
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (19 bp):
TAATTCTACCTTACAGGGG
Found at i:47872008 original size:27 final size:27
Alignment explanation
Indices: 47871464--47872000 Score: 826
Period size: 27 Copynumber: 19.9 Consensus size: 27
47871454 CTTTACAGGG
*
47871464 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871491 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871518 GTAATTCTACCTTACAGGGGTATCTC-
1 GTAATTCTACCTTACAGGGGTATTTCA
* **
47871544 GATAATTCTACCCTACAGGGGTATTTGG
1 G-TAATTCTACCTTACAGGGGTATTTCA
*
47871572 GTAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTCA
* * *
47871599 GTAATTCTACCATAAAGGGGTATTTTA
1 GTAATTCTACCTTACAGGGGTATTTCA
47871626 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871653 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871680 ATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871707 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871734 GTAATTCTACCTTACAGGGGTACTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871761 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
* **
47871788 GTAATTCTACCTTATAGGGGTATTTTG
1 GTAATTCTACCTTACAGGGGTATTTCA
47871815 GTAATTCTACCTTACA-GGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871841 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
*
47871868 ATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
* *
47871895 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
47871922 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCTTACAGGGGTATTTCA
* * *
47871949 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCTTACAGGGGTATTTCA
47871976 GTAATTCTACCTTACAGGGGTATTT
1 GTAATTCTACCTTACAGGGGTATTT
47872001 TGGTAATTTT
Statistics
Matches: 464, Mismatches: 43, Indels: 6
0.90 0.08 0.01
Matches are distributed among these distances:
26 24 0.05
27 439 0.95
28 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCTTACAGGGGTATTTCA
Found at i:47874867 original size:18 final size:19
Alignment explanation
Indices: 47874844--47874882 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
47874834 TTTATCTCAA
*
47874844 TTTCTT-TTTCCACTCTTT
1 TTTCTTGTTTACACTCTTT
*
47874862 TTTCTTGTTTACATTCTTT
1 TTTCTTGTTTACACTCTTT
47874881 TT
1 TT
47874883 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.08, C:0.21, G:0.03, T:0.69
Consensus pattern (19 bp):
TTTCTTGTTTACACTCTTT
Found at i:47874910 original size:30 final size:30
Alignment explanation
Indices: 47874876--47874942 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
47874866 TTGTTTACAT
**
47874876 TCTTTTTCTCTCTCAAACTCTTTTTCATTC
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
*** *
47874906 TCTTTTTCAATCTCATTTTCTTTTTCATTT
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
47874936 TCTTTTT
1 TCTTTTT
47874943 GTTTTTCAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAACTCTTTTTCATTC
Found at i:47874942 original size:18 final size:18
Alignment explanation
Indices: 47874900--47874951 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
47874890 AAACTCTTTT
*
47874900 TCATTCTCTTTTTCAATC
1 TCATTTTCTTTTTCAATC
* *
47874918 TCATTTTCTTTTTCATTT
1 TCATTTTCTTTTTCAATC
* *
47874936 TCTTTTTGTTTTTCAA
1 TCATTTTCTTTTTCAA
47874952 AGGCTTTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.19, G:0.02, T:0.65
Consensus pattern (18 bp):
TCATTTTCTTTTTCAATC
Found at i:47874949 original size:12 final size:12
Alignment explanation
Indices: 47874918--47874942 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
47874908 TTTTTCAATC
47874918 TCATTTTCTTTT
1 TCATTTTCTTTT
47874930 TCATTTTCTTTT
1 TCATTTTCTTTT
47874942 T
1 T
47874943 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:47875021 original size:5 final size:5
Alignment explanation
Indices: 47875011--47875067 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
47875001 CTTTTGCCTC
*
47875011 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
47875058 TCTTT TCTTT
1 TCTTT TCTTT
47875068 GTTTTCTCGT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:47875051 original size:15 final size:14
Alignment explanation
Indices: 47875011--47875067 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
47875001 CTTTTGCCTC
*
47875011 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
47875026 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
47875041 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
47875058 TCTTTTCTTT
1 TCTTTTCTTT
47875068 GTTTTCTCGT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:47875068 original size:21 final size:21
Alignment explanation
Indices: 47875011--47875072 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
47875001 CTTTTGCCTC
* *
47875011 TCTTTTCTTTT-TATTTCGTTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
47875032 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
47875053 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
47875073 CTCGTTACAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
20 7 0.21
21 22 0.65
22 5 0.15
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.77
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:47877383 original size:40 final size:40
Alignment explanation
Indices: 47877328--47877546 Score: 372
Period size: 40 Copynumber: 5.5 Consensus size: 40
47877318 TTCAAATGAA
47877328 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
47877368 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
47877408 ATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
*
47877447 ATCCGGGCTAAGTCCCGAAAGCATTTGTGCTAGTGACTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
* *
47877487 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTAT
*
47877527 ATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAGTCCCGAAGG
47877547 TACTTGGGTT
Statistics
Matches: 171, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 53 0.31
40 116 0.68
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:47877460 original size:79 final size:79
Alignment explanation
Indices: 47877328--47877546 Score: 361
Period size: 79 Copynumber: 2.8 Consensus size: 79
47877318 TTCAAATGAA
47877328 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
47877393 TGTGCTAGTGACTAT
65 TGTGCTAGTGACTAT
*
47877408 ATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAAGCATTT
1 ATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
47877473 GTGCTAGTGACTAT
66 GTGCTAGTGACTAT
* * *
47877487 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
1 ATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGG
47877547 TACTTGGGTT
Statistics
Matches: 132, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
79 91 0.69
80 39 0.30
81 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTT
GTGCTAGTGACTAT
Found at i:47877544 original size:119 final size:119
Alignment explanation
Indices: 47877328--47877546 Score: 370
Period size: 119 Copynumber: 1.8 Consensus size: 119
47877318 TTCAAATGAA
* *
47877328 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAAGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATT
* *
47877393 TGTGCTAGTGACTATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGTGACTAT
66 TGTGCGAGTGACTATATCCGGGCTAAATCCGAAGGCATTTGTGCTAGTGACTAT
47877447 ATCCGGGCTAAGTCCCGAAAGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAAGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATT
47877512 TGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAGG
66 TGTGCGAG-TGACTATATCCGGGCTAAAT-CCGAAGG
47877547 TACTTGGGTT
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
118 7 0.07
119 85 0.90
120 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (119 bp):
ATCCGGGCTAAGTCCCGAAAGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTGACTATATCCGGGCTAAATCCGAAGGCATTTGTGCTAGTGACTAT
Found at i:47879283 original size:12 final size:12
Alignment explanation
Indices: 47879268--47879312 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
47879258 TTTTCACTTC
*
47879268 AATTTTTTTTCT
1 AATTTTTTTTCG
*
47879280 AATTTTTTTTAG
1 AATTTTTTTTCG
47879292 AATTTTTTTTCG
1 AATTTTTTTTCG
47879304 AATTTTTTT
1 AATTTTTTT
47879313 ACCTTGTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.71
Consensus pattern (12 bp):
AATTTTTTTTCG
Found at i:47884479 original size:18 final size:19
Alignment explanation
Indices: 47884438--47884486 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
47884428 ATTTTGGTTA
*
47884438 AGTTATTTTAATTAATTGT
1 AGTTATTTTAATTAACTGT
*
47884457 A-TTATTTTATTTAACT-T
1 AGTTATTTTAATTAACTGT
47884474 AGTTATATTTAAT
1 AGTTAT-TTTAAT
47884487 CTCTATAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 2 0.08
18 17 0.68
19 6 0.24
ACGTcount: A:0.33, C:0.02, G:0.06, T:0.59
Consensus pattern (19 bp):
AGTTATTTTAATTAACTGT
Found at i:47885918 original size:20 final size:20
Alignment explanation
Indices: 47885890--47885927 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47885880 CTAGGAACTA
47885890 TGTGATCTGAGATCATGAGT
1 TGTGATCTGAGATCATGAGT
* *
47885910 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGATCATGA
47885928 TATATATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGATCATGAGT
Found at i:47896053 original size:46 final size:46
Alignment explanation
Indices: 47895994--47896207 Score: 189
Period size: 46 Copynumber: 4.6 Consensus size: 46
47895984 TGATATGTGT
* * *
47895994 GCTAGTGTAAGACATGTCTGCGACATGAAACGGCCATAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATAATATGAGA
* * * *
47896040 GCTAGTGTAAGACATGTATGGGATATGCATCGGCCCTGAGATATTTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-A-ATA-TGAGA
* ** * *
47896088 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATAATATGAGA
* * * **
47896134 GCTAGTGTAAGACATGTCTAGAACATGCATCAGCC-TCACGATGGAGAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-AATAT-GAG-A
* *
47896182 GCTAGTGTAAGACCTATCTGGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
47896208 TGGCTGGGAC
Statistics
Matches: 135, Mismatches: 26, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
45 3 0.02
46 67 0.50
47 4 0.03
48 59 0.44
49 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATAATATGAGA
Found at i:47896189 original size:94 final size:94
Alignment explanation
Indices: 47895994--47896207 Score: 232
Period size: 94 Copynumber: 2.3 Consensus size: 94
47895984 TGATATGTGT
* *
47895994 GCTAGTGTAAGACATGTCTGCGACATGAAACGGCCATAATATGAGAGCTAGTGTAAGACATGTAT
1 GCTAGTGTAAGACATGTCTGGGACATGAAACGGCCATAAGATGAGAGCTAGTGTAAGACATGTAT
* * * * * ***
47896059 GGGATATGCATCGGCCCTGAGATATTTAA
66 AGAACATGCATCAGCCCTCAGATAGAGAA
* * * ** * *
47896088 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCGTTGAGATGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGAAACGGCCATAAGATGAGAGCTAGTGTAAGACATGTAT
*
47896153 AGAACATGCATCAG-CCTCACGATGGAGAA
66 AGAACATGCATCAGCCCTCA-GATAGAGAA
* *
47896182 GCTAGTGTAAGACCTATCTGGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
47896208 TGGCTGGGAC
Statistics
Matches: 98, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
93 4 0.04
94 94 0.96
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGAAACGGCCATAAGATGAGAGCTAGTGTAAGACATGTAT
AGAACATGCATCAGCCCTCAGATAGAGAA
Found at i:47902182 original size:45 final size:45
Alignment explanation
Indices: 47902126--47902292 Score: 226
Period size: 45 Copynumber: 3.7 Consensus size: 45
47902116 TGATATGTGT
47902126 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATGTGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATGTGAGA
* * * *
47902171 GCTAGTGTAAGACATGCCTGGGACATGCATCACCACAATATAAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATGTGAGA
* * **** *
47902216 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCATTGCGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATG-TGAGA
47902262 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
47902293 AACCTCACGA
Statistics
Matches: 105, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 72 0.69
46 33 0.31
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATGTGAGA
Found at i:47902289 original size:91 final size:90
Alignment explanation
Indices: 47902126--47902293 Score: 255
Period size: 91 Copynumber: 1.9 Consensus size: 90
47902116 TGATATGTGT
* * *
47902126 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATGTGAGAGCTAGTGTAAGACATGCCTG
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGCCACAACGCGAGAGCTAGTGTAAGACATGCCTG
47902191 GGACATGCATCACCACAATATAAGA
66 GGACATGCATCACCACAATATAAGA
* *** *
47902216 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCATTGCGACGAGAGCTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGCCACAACG-CGAGAGCTAGTGTAAGACATGCCT
47902281 GGGACATGCATCA
65 GGGACATGCATCA
47902294 ACCTCACGAT
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
90 34 0.49
91 35 0.51
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.22
Consensus pattern (90 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGCCACAACGCGAGAGCTAGTGTAAGACATGCCTG
GGACATGCATCACCACAATATAAGA
Found at i:47906445 original size:40 final size:41
Alignment explanation
Indices: 47906391--47906472 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
47906381 ATATGCCTTT
* * * * *
47906391 AGGGTTACCAAAGTAC-TAATAGGGGCATGTATGTGTATTC
1 AGGGGTACCAAAGTACAAAACAGGGGCACGTATGTGCATTC
*
47906431 AGGGGTACCGAAGTACAAAACAGGGGCACGTATGTGCATTC
1 AGGGGTACCAAAGTACAAAACAGGGGCACGTATGTGCATTC
47906472 A
1 A
47906473 AACAATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
40 14 0.40
41 21 0.60
ACGTcount: A:0.32, C:0.16, G:0.29, T:0.23
Consensus pattern (41 bp):
AGGGGTACCAAAGTACAAAACAGGGGCACGTATGTGCATTC
Found at i:47910180 original size:40 final size:39
Alignment explanation
Indices: 47910018--47910208 Score: 156
Period size: 40 Copynumber: 4.8 Consensus size: 39
47910008 CGAATGATGT
* * *
47910018 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTCACTA-AA
* * * *
47910058 CCGGACTAGGAT-CCGAAGGCATTCGTGCGAGAT-AATAAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TCACTAAA
* * * *
47910097 TCGGGCTAAG-CCCGAGGGCATTTGTGCAAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
* *
47910135 CCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTCACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTA-AA
** *
47910176 CCGGGCTTCGTCCCGAAGGCATTTGAGCGAGTC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTC
47910209 GTTATATCCG
Statistics
Matches: 119, Mismatches: 24, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
37 1 0.01
38 21 0.18
39 16 0.13
40 71 0.60
41 10 0.08
ACGTcount: A:0.25, C:0.24, G:0.29, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTCACTAAA
Found at i:47913692 original size:21 final size:21
Alignment explanation
Indices: 47913650--47913690 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
47913640 CTTAGTTTAT
47913650 TTATGTTATAATTGTTGTAAA
1 TTATGTTATAATTGTTGTAAA
47913671 TTATGTT-TAATT-TTGCTAAA
1 TTATGTTATAATTGTTG-TAAA
47913691 ATCTTTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.16
20 9 0.47
21 7 0.37
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (21 bp):
TTATGTTATAATTGTTGTAAA
Found at i:47919184 original size:20 final size:21
Alignment explanation
Indices: 47919151--47919189 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
47919141 AACTCAATGG
47919151 AGCTCAATTCAGCTCAATTCT
1 AGCTCAATTCAGCTCAATTCT
*
47919172 AGCTC-ATTGAGCTCAATT
1 AGCTCAATTCAGCTCAATT
47919190 TTATCCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (21 bp):
AGCTCAATTCAGCTCAATTCT
Found at i:47921167 original size:17 final size:19
Alignment explanation
Indices: 47921125--47921168 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
47921115 ATGAAATTTT
*
47921125 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
47921144 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
47921162 AA-TATTA
1 AATTATTA
47921169 CTTTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:47922801 original size:539 final size:539
Alignment explanation
Indices: 47921781--47922856 Score: 1972
Period size: 539 Copynumber: 2.0 Consensus size: 539
47921771 TAGGAGTTCC
*
47921781 ACAAGGGCACGGGTTATAGTCCAAGCGTAGGTATTTTTTAATTTTATATTTTTAAAATGAACGGG
1 ACAAGGGCACGGGTTATAGTCCAAGCGCAGGTATTTTTTAATTTTATATTTTTAAAATGAACGGG
47921846 ACATCAACAGGTAACCTTTAAGATAAAATGTGACGATATATTGTTAAAAGTGAATGTGCGTCCCA
66 ACATCAACAGGTAACCTTTAAGATAAAATGTGACGATATATTGTTAAAAGTGAATGTGCGTCCCA
*
47921911 GTGGCCAGTAGCGTGCTGGGCAACCTAGAGGTCCCAGGTTCGAGCAGCATTAGCGCAAGAGAGTG
131 GTGGCCAGTAGCGTGCTGGGAAACCTAGAGGTCCCAGGTTCGAGCAGCATTAGCGCAAGAGAGTG
*
47921976 CTTCTTTTTGCTGTACGAGAGTGGGAAGGGCCGTACGGGATTGAAACTCTACCAGCAACAGGAGG
196 CTTCTTTTTGCTGTACGAGAGTGGGAAGGGCCGTACGGGATTGAAACTCTACCAGCAACAGGAGA
*
47922041 AGTCGGATGAGGGGTGGACTACTGTTAAGCAGTAGAGAGTTTGAATTAAATTCAAACTTTGAATT
261 AGTCGGATGAGGGGTGGACTACTGCTAAGCAGTAGAGAGTTTGAATTAAATTCAAACTTTGAATT
47922106 TGGCAATGAATTAAGGAGCTAAGGAAGGAATTAAAATTGGAAAAGGACTTTTGTGCCTATTCAAG
326 TGGCAATGAATTAAGGAGCTAAGGAAGGAATTAAAATTGGAAAAGGACTTTTGTGCCTATTCAAG
* *
47922171 CACCCATTTGGGTATAAGCATGAGGTGCCGATTGTTTTTATTTTGGGGGGCCTTTACGAGTTTAT
391 CACCCATTTGGGCATAAGCATGAGGTGCCGATTGTTTTTATTTTGGGGGGCCTTCACGAGTTTAT
* *
47922236 CCTTCTTGAAGGTTTGGGATTTTTTTTTAGTGTGGTAGCCAATTCTCTCCTTTTCTCTTTTCTTT
456 CCTTCTTGAAGGTTAGGGATTTTTTTTTAGTGTGGTAGCCAATTCTCTCCTTTTCTATTTTCTTT
47922301 CCTCGAAGCCAAATTTTTT
521 CCTCGAAGCCAAATTTTTT
*
47922320 ACAAGGGCACGGGTTATAGTCCAGGCGCAGGTATTTTTTAATTTTATATTTTTAAAATGAACGGG
1 ACAAGGGCACGGGTTATAGTCCAAGCGCAGGTATTTTTTAATTTTATATTTTTAAAATGAACGGG
*
47922385 ACATCAACAGGTAACCTTTAAGATAAAATGTGACGATATATTGTTAAAAGTGAATGTGCGTCCTA
66 ACATCAACAGGTAACCTTTAAGATAAAATGTGACGATATATTGTTAAAAGTGAATGTGCGTCCCA
* *
47922450 GTGGCCAGTAGCGTTCTGGGAAACCTAGAGGTCCCAGGTTCGAGCAGCGTTAGCGCAAGAGAGTG
131 GTGGCCAGTAGCGTGCTGGGAAACCTAGAGGTCCCAGGTTCGAGCAGCATTAGCGCAAGAGAGTG
*
47922515 CTTCTTTTTGCTGTACGAGAGTGGGAAGGGCCGTACGGGATTGAAACTCTACCAGCAATAGGAGA
196 CTTCTTTTTGCTGTACGAGAGTGGGAAGGGCCGTACGGGATTGAAACTCTACCAGCAACAGGAGA
* *
47922580 AGTCGGATGAGGGGTGGACTACTGCTAAGGAGTGGAGAGTTTGAATTAAATTCAAACTTTGAATT
261 AGTCGGATGAGGGGTGGACTACTGCTAAGCAGTAGAGAGTTTGAATTAAATTCAAACTTTGAATT
* *
47922645 TGGCCATGAATTAAGGAGCTAAGGAAGGAATTAAAATTGGAAAAGGACTTTTGTGCCTATTTAAG
326 TGGCAATGAATTAAGGAGCTAAGGAAGGAATTAAAATTGGAAAAGGACTTTTGTGCCTATTCAAG
* *
47922710 CTCCCATTTGGGCATAAGCATGAGGTGCCGATTGTTTTTATTTTGGGGGGCCTTCATGAGTTATA
391 CACCCATTTGGGCATAAGCATGAGGTGCCGATTGTTTTTATTTTGGGGGGCCTTCACGAGTT-TA
47922775 TCCTTCTTGAAGGTTAGGGATTTTTTTTTAGTGTGGTAGCCAATTCTCTCCTTTTCTATTTTCTT
455 TCCTTCTTGAAGGTTAGGGATTTTTTTTTAGTGTGGTAGCCAATTCTCTCCTTTTCTATTTTCTT
47922840 TCCTCGAAGCCAAATTT
520 TCCTCGAAGCCAAATTT
47922857 GATTTAAAAT
Statistics
Matches: 517, Mismatches: 19, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
539 435 0.84
540 82 0.16
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (539 bp):
ACAAGGGCACGGGTTATAGTCCAAGCGCAGGTATTTTTTAATTTTATATTTTTAAAATGAACGGG
ACATCAACAGGTAACCTTTAAGATAAAATGTGACGATATATTGTTAAAAGTGAATGTGCGTCCCA
GTGGCCAGTAGCGTGCTGGGAAACCTAGAGGTCCCAGGTTCGAGCAGCATTAGCGCAAGAGAGTG
CTTCTTTTTGCTGTACGAGAGTGGGAAGGGCCGTACGGGATTGAAACTCTACCAGCAACAGGAGA
AGTCGGATGAGGGGTGGACTACTGCTAAGCAGTAGAGAGTTTGAATTAAATTCAAACTTTGAATT
TGGCAATGAATTAAGGAGCTAAGGAAGGAATTAAAATTGGAAAAGGACTTTTGTGCCTATTCAAG
CACCCATTTGGGCATAAGCATGAGGTGCCGATTGTTTTTATTTTGGGGGGCCTTCACGAGTTTAT
CCTTCTTGAAGGTTAGGGATTTTTTTTTAGTGTGGTAGCCAATTCTCTCCTTTTCTATTTTCTTT
CCTCGAAGCCAAATTTTTT
Found at i:47924171 original size:23 final size:23
Alignment explanation
Indices: 47924140--47924186 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
47924130 AGGTTAAGGT
*
47924140 TGACTTGAATGCATGTTTGACTG
1 TGACCTGAATGCATGTTTGACTG
47924163 TGACCTGAATGCATGTTTGACTG
1 TGACCTGAATGCATGTTTGACTG
47924186 T
1 T
47924187 TACTATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.21, C:0.15, G:0.26, T:0.38
Consensus pattern (23 bp):
TGACCTGAATGCATGTTTGACTG
Found at i:47927649 original size:13 final size:13
Alignment explanation
Indices: 47927631--47927655 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47927621 GAATTAACAT
47927631 GTGTGAAAGTTTC
1 GTGTGAAAGTTTC
47927644 GTGTGAAAGTTT
1 GTGTGAAAGTTT
47927656 GATCATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.04, G:0.32, T:0.40
Consensus pattern (13 bp):
GTGTGAAAGTTTC
Found at i:47928761 original size:31 final size:31
Alignment explanation
Indices: 47928719--47928782 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
47928709 CCCTTTCATA
47928719 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
* *
47928750 TTTCATGTTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
47928781 TT
1 TT
47928783 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:47928984 original size:24 final size:24
Alignment explanation
Indices: 47928957--47929072 Score: 118
Period size: 24 Copynumber: 4.9 Consensus size: 24
47928947 GCTTTATCAT
* * *
47928957 ATAACTGGAGGCC-TAGCCTTTTTA
1 ATAACTGG-GGCCAAAGCCCTTTCA
47928981 ATAACTGGGGCCAAAGCCCTTTCA
1 ATAACTGGGGCCAAAGCCCTTTCA
47929005 ATAACTGGGG-CATAAGCCCTTT--
1 ATAACTGGGGCCA-AAGCCCTTTCA
*
47929027 ATAACTGGGG-CATAAGCCCTTTCG
1 ATAACTGGGGCCA-AAGCCCTTTCA
47929051 ATAACTGGGG-CATAAGCCCTTT
1 ATAACTGGGGCCA-AAGCCCTTT
47929073 TTCACTTCCT
Statistics
Matches: 85, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
22 22 0.26
23 6 0.07
24 57 0.67
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCCAAAGCCCTTTCA
Found at i:47929033 original size:22 final size:23
Alignment explanation
Indices: 47928981--47929072 Score: 143
Period size: 24 Copynumber: 4.0 Consensus size: 23
47928971 AGCCTTTTTA
47928981 ATAACTGGGGCCA-AAGCCCTTTC
1 ATAACTGGGG-CATAAGCCCTTTC
47929004 AATAACTGGGGCATAAGCCCTTT-
1 -ATAACTGGGGCATAAGCCCTTTC
47929027 ATAACTGGGGCATAAGCCCTTTC
1 ATAACTGGGGCATAAGCCCTTTC
47929050 GATAACTGGGGCATAAGCCCTTT
1 -ATAACTGGGGCATAAGCCCTTT
47929073 TTCACTTCCT
Statistics
Matches: 65, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
22 22 0.34
23 2 0.03
24 41 0.63
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTC
Found at i:47929034 original size:46 final size:46
Alignment explanation
Indices: 47928981--47929072 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
47928971 AGCCTTTTTA
47928981 ATAACTGGGGCCA-AAGCCCTTTCAATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGG-CATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTT
*
47929027 ATAACTGGGGCATAAGCCCTTTCGATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTT
47929073 TTCACTTCCT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 2 0.05
46 42 0.95
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (46 bp):
ATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTT
Found at i:47929149 original size:20 final size:20
Alignment explanation
Indices: 47929124--47929183 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
47929114 TATGATTACC
47929124 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
47929144 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
47929164 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
47929184 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:47929258 original size:25 final size:25
Alignment explanation
Indices: 47929226--47929273 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47929216 ATACATAAAC
* * *
47929226 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
47929251 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
47929274 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:47937041 original size:31 final size:31
Alignment explanation
Indices: 47936999--47937062 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
47936989 CCTTTTCATA
47936999 TTTCATATTTCATAATACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
* *
47937030 TTTCATGTTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAATACTGGGCCGAAGCCT
47937061 TT
1 TT
47937063 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAATACTGGGCCGAAGCCT
Found at i:47937318 original size:24 final size:24
Alignment explanation
Indices: 47937253--47937353 Score: 80
Period size: 24 Copynumber: 3.9 Consensus size: 24
47937243 GCTTTATCAT
* *
47937253 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTCA
47937278 ATAACTGGGGCCA-AAGCCCTTTCA
1 ATAACTGGGG-CATAAGCCCTTTCA
*
47937302 ATAACTGGGGCATAAGCATAAGCCCTTTCG
1 ATAACT-GGG-----GCATAAGCCCTTTCA
47937332 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
47937354 TTCACTTCCT
Statistics
Matches: 64, Mismatches: 3, Indels: 19
0.74 0.03 0.22
Matches are distributed among these distances:
24 26 0.41
25 16 0.25
29 5 0.08
30 17 0.27
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.26
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTCA
Found at i:47937327 original size:30 final size:30
Alignment explanation
Indices: 47937291--47937348 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
47937281 ACTGGGGCCA
47937291 AAGCCCTTTCAATAACTGGGGCATAAGCAT
1 AAGCCCTTTCAATAACTGGGGCATAAGCAT
*
47937321 AAGCCCTTTCGATAACTGGGGCATAAGC
1 AAGCCCTTTCAATAACTGGGGCATAAGC
47937349 CCTTTTTCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (30 bp):
AAGCCCTTTCAATAACTGGGGCATAAGCAT
Found at i:47937430 original size:20 final size:20
Alignment explanation
Indices: 47937405--47937464 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
47937395 TATGATTACC
47937405 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
* *
47937425 TCATGTGCGTATCATACATT
1 TCATGTGCATATCATACATA
47937445 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
47937465 CCATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.37
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:47937539 original size:25 final size:25
Alignment explanation
Indices: 47937507--47937554 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
47937497 ATACATAAAC
* * *
47937507 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
47937532 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
47937555 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:47939486 original size:40 final size:40
Alignment explanation
Indices: 47939420--47939586 Score: 169
Period size: 40 Copynumber: 4.2 Consensus size: 40
47939410 AAATTGAATG
* * *
47939420 ATATCCGGGCTAAG-CCCGAAGACAATTATGCTGGAAATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* * **
47939459 ATATCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
* *
47939499 ATATCCGGGCTAAGGCCCGAAGGC-ATTCGTGC-GAGTTATT
1 ATATCCGGGCTAAGACCCGAAGGCAATT-GTGCTG-GTAATT
* * ** *
47939539 CTATCCGGGCTAAGACCCGAAGGCATTTGTGCACGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
47939579 ATATCCGG
1 ATATCCGG
47939587 TTATATTCCG
Statistics
Matches: 105, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
39 16 0.15
40 87 0.83
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTGGTAATT
Found at i:47945784 original size:27 final size:28
Alignment explanation
Indices: 47945727--47945794 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 28
47945717 ATTTGTACAA
47945727 CACTAAGTGTGCGAGTTTGATCATATAG
1 CACTAAGTGTGCGAGTTTGATCATATAG
* *
47945755 CACTAAGTGTGCGAG-TTGATTATATGG
1 CACTAAGTGTGCGAGTTTGATCATATAG
47945782 CACTAAGTGTGCG
1 CACTAAGTGTGCG
47945795 GACTCACTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTGATCATATAG
Found at i:47945805 original size:27 final size:27
Alignment explanation
Indices: 47945727--47945807 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 27
47945717 ATTTGTACAA
* * *
47945727 CACTAAGTGTGCGAGTTTGA-TCATATAG
1 CACTAAGTGTGCGAG-CTCACT-ATATGG
* * *
47945755 CACTAAGTGTGCGAGTTGATTATATGG
1 CACTAAGTGTGCGAGCTCACTATATGG
47945782 CACTAAGTGTGCG-GACTCACTATATG
1 CACTAAGTGTGCGAG-CTCACTATATG
47945808 CTTTTGAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.02
27 30 0.64
28 16 0.34
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (27 bp):
CACTAAGTGTGCGAGCTCACTATATGG
Found at i:47952218 original size:34 final size:34
Alignment explanation
Indices: 47952175--47952245 Score: 108
Period size: 34 Copynumber: 2.1 Consensus size: 34
47952165 CTGAATTAAA
*
47952175 AGAATTAAAG-CCTTAGTTGCAAAAGTTGACCGAT
1 AGAATTAAAGTCC-CAGTTGCAAAAGTTGACCGAT
*
47952209 AGAATTAAAGTCCCAGTTGCAAGAGTTGACCGAT
1 AGAATTAAAGTCCCAGTTGCAAAAGTTGACCGAT
47952243 AGA
1 AGA
47952246 GGGTTTGCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 32 0.94
35 2 0.06
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.24
Consensus pattern (34 bp):
AGAATTAAAGTCCCAGTTGCAAAAGTTGACCGAT
Found at i:47954649 original size:20 final size:20
Alignment explanation
Indices: 47954624--47954663 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
47954614 GAACTAGAAA
47954624 AGATTCATGATGTGTTTCAC
1 AGATTCATGATGTGTTTCAC
47954644 AGATTCATGATGTGTTTCAC
1 AGATTCATGATGTGTTTCAC
47954664 GTATCGATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (20 bp):
AGATTCATGATGTGTTTCAC
Found at i:47957208 original size:30 final size:30
Alignment explanation
Indices: 47957141--47957209 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
47957131 GTGTGTCTCA
47957141 GTAGTGTGTGACACACGACTATGTTGCACG
1 GTAGTGTGTGACACACGACTATGTTGCACG
** * * *
47957171 GCCGTGTGTGACATACGGCTATGTTGTACG
1 GTAGTGTGTGACACACGACTATGTTGCACG
47957201 GTAGTGTGT
1 GTAGTGTGT
47957210 CCCTTGGGGT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.19, C:0.17, G:0.33, T:0.30
Consensus pattern (30 bp):
GTAGTGTGTGACACACGACTATGTTGCACG
Found at i:47966339 original size:49 final size:49
Alignment explanation
Indices: 47966276--47966464 Score: 204
Period size: 49 Copynumber: 3.8 Consensus size: 49
47966266 CGAAGCTATC
* *
47966276 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTG
* * * *
47966325 GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-TCTA
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAGTCTG
* * * *
47966375 ATACACATAGTAGCCTGCAC-TAGTACTACACACGTGATC-ACAGTTTTCAG
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCTG
* *
47966425 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
47966465 TCACAATAGA
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
46 2 0.02
47 1 0.01
49 51 0.44
50 42 0.36
51 20 0.17
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTG
Found at i:47966437 original size:100 final size:99
Alignment explanation
Indices: 47966281--47966468 Score: 263
Period size: 100 Copynumber: 1.9 Consensus size: 99
47966271 CTATCGTACG
* * *
47966281 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAGGTACACATAGTAGCCTGCACT
*
47966346 TAGTACTACACACGTGACCTCACCATCTAATACA
66 TAGTACTACACACGCGACCTCACCATCTAATACA
* * *
47966380 CATAGTAGCCTGCAC-TAGTACTACACACGTGATC-ACAGTTTTCAGGTACGCATAGTAGCCTGC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG---TCAGGTACACATAGTAGCCTGC
*
47966443 ACTTAGTACTACACATGCGACCTCAC
63 ACTTAGTACTACACACGCGACCTCAC
47966469 AATAGATCAT
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
97 4 0.05
98 16 0.21
99 15 0.19
100 43 0.55
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (99 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCAGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCTCACCATCTAATACA
Found at i:47968918 original size:14 final size:14
Alignment explanation
Indices: 47968899--47968962 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
47968889 TAAAGATAAC
*
47968899 AAGAAAACCGAATA
1 AAGAAATCCGAATA
*
47968913 AAGAAATCCAAGATA
1 AAGAAATCCGA-ATA
*
47968928 GAA-AAACCCAGAATA
1 -AAGAAATCC-GAATA
*
47968943 AAGAAATCAGAATA
1 AAGAAATCCGAATA
47968957 AAGAAA
1 AAGAAA
47968963 CCCAAGATAC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
14 22 0.55
15 15 0.38
16 3 0.08
ACGTcount: A:0.64, C:0.12, G:0.14, T:0.09
Consensus pattern (14 bp):
AAGAAATCCGAATA
Found at i:47972042 original size:49 final size:48
Alignment explanation
Indices: 47971969--47972112 Score: 207
Period size: 49 Copynumber: 2.9 Consensus size: 48
47971959 AGCCGAAGCT
* *
47971969 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
* *
47972017 AGTCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTCACC
1 A-TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAC
**
47972068 ATCTAATACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC
47972113 TCACAATAGA
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
48 2 0.02
49 40 0.47
50 40 0.47
51 4 0.05
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.24
Consensus pattern (48 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAAC
Found at i:47972099 original size:50 final size:51
Alignment explanation
Indices: 47971981--47972116 Score: 215
Period size: 50 Copynumber: 2.7 Consensus size: 51
47971971 CTGGTACGCA
* **
47971981 TAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAACAGTCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACCAGTCTAATACACG
*
47972030 TAGTAGCCTGCACTTAGTACTACACATGTGACCTCACCA-TCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACCAGTCTAATACACG
47972080 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCAC
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTCAC
47972117 AATAGATCAT
Statistics
Matches: 80, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
49 30 0.38
50 46 0.57
51 4 0.05
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (51 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTCACCAGTCTAATACACG
Found at i:47976187 original size:2 final size:2
Alignment explanation
Indices: 47976180--47976204 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
47976170 GTATGATCCA
47976180 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
47976205 AGTTAAACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:47979590 original size:43 final size:43
Alignment explanation
Indices: 47979522--47979644 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 43
47979512 CATAAGCTCG
* * *
47979522 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
** * * *
47979563 TATTGATGCCAATGTCCTAGACATGGTCTTACACGTAATCTCAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
47979607 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAAT
47979645 TACATCCAGA
Statistics
Matches: 67, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 2 0.03
42 5 0.07
43 57 0.85
44 3 0.04
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
Found at i:47984345 original size:30 final size:30
Alignment explanation
Indices: 47984309--47984409 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
47984299 GACAAGATTG
* * *
47984309 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
47984339 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
47984367 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
47984396 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47984410 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:47984421 original size:29 final size:28
Alignment explanation
Indices: 47984338--47984413 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
47984328 AAAATTGTAC
* *
47984338 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
47984366 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
47984395 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
47984414 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:47992208 original size:30 final size:30
Alignment explanation
Indices: 47992172--47992272 Score: 118
Period size: 28 Copynumber: 3.5 Consensus size: 30
47992162 GACAAGATTG
* * *
47992172 GCACTAAGTGTGCGGGTTTAAAATTGTACA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
47992202 GCACTAAGTGTGCGAGTTT--GATTCTATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
* *
47992230 GCACTAAGTGTGCGAGCTGAAAA-TATATA
1 GCACTAAGTGTGCGAGTTTAAAATTATATA
47992259 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
47992273 GATTCACTAT
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
28 23 0.38
29 19 0.31
30 19 0.31
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
GCACTAAGTGTGCGAGTTTAAAATTATATA
Found at i:47992284 original size:29 final size:28
Alignment explanation
Indices: 47992201--47992276 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 28
47992191 AAAATTGTAC
* *
47992201 AGCACTAAGTGTGCGAGTTTGAT-TCTAT
1 AGCACTAAGTGTGCG-GATTGATATATAT
* *
47992229 AGCACTAAGTGTGC-GAGCTGAAAATATAT
1 AGCACTAAGTGTGCGGA-TTG-ATATATAT
47992258 AGCACTAAGTGTGCGGATT
1 AGCACTAAGTGTGCGGATT
47992277 CACTATATGC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
26 1 0.03
27 2 0.05
28 15 0.38
29 19 0.49
30 2 0.05
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGGATTGATATATAT
Found at i:47996582 original size:28 final size:28
Alignment explanation
Indices: 47996551--47996819 Score: 159
Period size: 28 Copynumber: 9.5 Consensus size: 28
47996541 ACACCCGATC
*
47996551 TCGCACACATAATGCTCGGTTAATAATT
1 TCGCACACATAGTGCTCGGTTAATAATT
*
47996579 TCGCACACATAGTGC-C--TTACACCCT-ATC
1 TCGCACACATAGTGCTCGGTTA-A---TAATT
* *
47996607 TAGCACACATAGTGCTTGGTTAATAATT
1 TCGCACACATAGTGCTCGGTTAATAATT
** *
47996635 TCGCACACACATAGTGC-C--TTACACCCGATC
1 TCG--CACACATAGTGCTCGGTTA-A--TAATT
*
47996665 TCGCACACATAATGCTCGGTTAATAATT
1 TCGCACACATAGTGCTCGGTTAATAATT
** *
47996693 TCGCACACATAGTGC-C--TTACACCCGATC
1 TCGCACACATAGTGCTCGGTTA-A--TAATT
* *
47996721 TAGCACACATAGTGCTTGGTTAATAATT
1 TCGCACACATAGTGCTCGGTTAATAATT
* *
47996749 TCGCACACATAGTGC-C--TTACACCCAATC
1 TCGCACACATAGTGCTCGGTTA-A--TAATT
* *
47996777 TAGCACACATAGTGCTTGGTTAATAATT
1 TCGCACACATAGTGCTCGGTTAATAATT
47996805 TCGCACACATAGTGC
1 TCGCACACATAGTGC
47996820 ATATATTCAT
Statistics
Matches: 181, Mismatches: 32, Indels: 56
0.67 0.12 0.21
Matches are distributed among these distances:
25 9 0.05
26 3 0.02
27 6 0.03
28 128 0.71
29 2 0.01
30 21 0.12
31 12 0.07
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGGTTAATAATT
Found at i:47996602 original size:56 final size:56
Alignment explanation
Indices: 47996514--47996819 Score: 495
Period size: 56 Copynumber: 5.4 Consensus size: 56
47996504 ATATTCCCTA
* * * *
47996514 AATAATTTCGCACACACACAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTT
1 AATAATTTCG--CACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
*
47996572 AATAATTTCGCACACATAGTGCCTTACACCCTATCTAGCACACATAGTGCTTGGTT
1 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
* * *
47996628 AATAATTTCGCACACACATAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTT
1 AATAATTTCG--CACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
47996686 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
1 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
*
47996742 AATAATTTCGCACACATAGTGCCTTACACCCAATCTAGCACACATAGTGCTTGGTT
1 AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
47996798 AATAATTTCGCACACATAGTGC
1 AATAATTTCGCACACATAGTGC
47996820 ATATATTCAT
Statistics
Matches: 233, Mismatches: 13, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
56 171 0.73
58 62 0.27
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (56 bp):
AATAATTTCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
Found at i:47996714 original size:114 final size:114
Alignment explanation
Indices: 47996514--47996819 Score: 544
Period size: 114 Copynumber: 2.7 Consensus size: 114
47996504 ATATTCCCTA
*
47996514 AATAATTTCGCACACACACAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTTAATAATT
1 AATAATTTCGCACACACATAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTTAATAATT
*
47996579 TCGCACACATAGTGCCTTACACCCTATCTAGCACACATAGTGCTTGGTT
66 TCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
47996628 AATAATTTCGCACACACATAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTTAATAATT
1 AATAATTTCGCACACACATAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTTAATAATT
47996693 TCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
66 TCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
* * * *
47996742 AATAATTTCG--CACACATAGTGCCTTACACCCAATCTAGCACACATAGTGCTTGGTTAATAATT
1 AATAATTTCGCACACACATAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTTAATAATT
47996805 TCGCACACATAGTGC
66 TCGCACACATAGTGC
47996820 ATATATTCAT
Statistics
Matches: 186, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
112 64 0.34
114 122 0.66
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.27
Consensus pattern (114 bp):
AATAATTTCGCACACACATAGTGCCTTACACCCGATCTCGCACACATAATGCTCGGTTAATAATT
TCGCACACATAGTGCCTTACACCCGATCTAGCACACATAGTGCTTGGTT
Done.